| http://purl.uniprot.org/unirules/MF_04026#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:902912 up:source unirule:MF_04026 .
_:902913 up:source unirule:MF_04026 .
_:902914 up:source unirule:MF_04026 .
_:902915 up:source unirule:MF_04026 .
_:902916 up:source unirule:MF_04026 .
_:902917 up:source unirule:MF_04026 .
_:902918 up:source unirule:MF_04026 .
_:902919 up:source unirule:MF_04026 .
_:902920 up:source unirule:MF_04026 .
_:902921 up:source unirule:MF_04026 .
_:902922 up:source unirule:MF_04026 .
_:902923 up:source unirule:MF_04026 .
_:902924 up:source unirule:MF_04026 .
_:902925 up:source unirule:MF_04026 .
_:902926 up:source unirule:MF_04026 .
_:902927 up:source unirule:MF_04026 .
_:902928 up:source unirule:MF_04026 .
_:902929 up:source unirule:MF_04026 .
_:902930 up:source unirule:MF_04026 .
_:902931 up:source unirule:MF_04026 .
_:902932 up:source unirule:MF_04026 .
_:902933 up:source unirule:MF_04026 .
_:902934 up:source unirule:MF_04026 .
_:902935 up:source unirule:MF_04026 .
_:902936 up:source unirule:MF_04026 .
_:902937 up:source unirule:MF_04026 .
_:902938 up:source unirule:MF_04026 .
_:902939 up:source unirule:MF_04026 .
_:902940 up:source unirule:MF_04026 .
_:902941 up:source unirule:MF_04026 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0004748 ,
GO:0005524 ,
GO:0016032 ,
keyword:1015 ,
keyword:244 ,
keyword:547 ,
keyword:560 ,
keyword:67 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.17.4.1' ;
up:fullName 'Ribonucleoside-diphosphate reductase large subunit' ;
up:shortName 'R1' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Ribonucleotide reductase large subunit' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'RIR1' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Ribonucleoside-diphosphate reductase holoenzyme provides the precursors necessary for viral DNA synthesis. Allows virus growth in non-dividing cells, as well as reactivation from latency in infected hosts. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Heterotetramer composed of a homodimer of the large subunit (R1) and a homodimer of the small subunit (R2). Larger multisubunit protein complex are also active, composed of (R1)n(R2)n.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the ribonucleoside diphosphate reductase large chain family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf ?molecule13 .
?molecule13 rdfs:label 'substrate' .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf ?molecule21 .
?molecule21 rdfs:label 'substrate' .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf ?molecule29 .
?molecule29 rdfs:label 'substrate' .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Cysteine radical intermediate' .
?pfsb40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf ?molecule55 .
?molecule55 rdfs:label 'substrate' .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf ?molecule63 .
?molecule63 rdfs:label 'substrate' .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for hydrogen atom transfer' .
?pfsb68 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for hydrogen atom transfer' .
?pfsb74 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfs78 up:annotation ?annotation79 .
?annotation79 faldo:begin ?pfsb80 ;
faldo:end ?pfse81 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for electron transfer' .
?pfsb80 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfse81 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?pfs84 up:annotation ?annotation85 .
?annotation85 faldo:begin ?pfsb86 ;
faldo:end ?pfse87 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for electron transfer' .
?pfsb86 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?pfse87 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?pfs90 up:annotation ?annotation91 .
?annotation91 faldo:begin ?pfsb92 ;
faldo:end ?pfse93 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interacts with thioredoxin/glutaredoxin' .
?pfsb92 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?pfse93 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?pfs96 up:annotation ?annotation97 .
?annotation97 faldo:begin ?pfsb98 ;
faldo:end ?pfse99 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interacts with thioredoxin/glutaredoxin' .
?pfsb98 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?pfse99 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?pfs102 up:annotation ?annotation103 .
?annotation103 faldo:begin ?pfsb104 ;
faldo:end ?pfse105 ;
rdf:type up:Disulfide_Bond_Annotation ;
rdfs:comment 'Redox-active' .
?pfsb104 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?pfse105 faldo:position ?thisPositionOn107 ;
rdf:type faldo:ExactPosition .
_:902942 a rdf:Statement ;
up:attribution _:902912 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:902943 a rdf:Statement ;
up:attribution _:902913 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:902944 a rdf:Statement ;
up:attribution _:902914 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:902945 a rdf:Statement ;
up:attribution _:902915 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:902946 a rdf:Statement ;
up:attribution _:902916 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:902947 a rdf:Statement ;
up:attribution _:902917 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:902948 a rdf:Statement ;
up:attribution _:902918 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:902949 a rdf:Statement ;
up:attribution _:902919 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:902950 a rdf:Statement ;
up:attribution _:902920 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:902951 a rdf:Statement ;
up:attribution _:902921 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:244 .
_:902952 a rdf:Statement ;
up:attribution _:902922 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:902953 a rdf:Statement ;
up:attribution _:902923 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:902954 a rdf:Statement ;
up:attribution _:902924 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:902955 a rdf:Statement ;
up:attribution _:902925 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004748 .
_:902956 a rdf:Statement ;
up:attribution _:902926 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016032 .
_:902957 a rdf:Statement ;
up:source unirule:MF_04026 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:902958 a rdf:Statement ;
up:attribution _:902927 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:902959 a rdf:Statement ;
up:source unirule:MF_04026 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:902960 a rdf:Statement ;
up:attribution _:902928 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:902961 a rdf:Statement ;
up:source unirule:MF_04026 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:902962 a rdf:Statement ;
up:attribution _:902929 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:902963 a rdf:Statement ;
up:source unirule:MF_04026 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:902964 a rdf:Statement ;
up:attribution _:902930 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:902965 a rdf:Statement ;
up:source unirule:MF_04026 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:902966 a rdf:Statement ;
up:attribution _:902931 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:902967 a rdf:Statement ;
up:source unirule:MF_04026 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:902968 a rdf:Statement ;
up:attribution _:902932 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:902969 a rdf:Statement ;
up:source unirule:MF_04026 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:902970 a rdf:Statement ;
up:attribution _:902933 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:902971 a rdf:Statement ;
up:source unirule:MF_04026 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:902972 a rdf:Statement ;
up:attribution _:902934 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:902973 a rdf:Statement ;
up:source unirule:MF_04026 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:902974 a rdf:Statement ;
up:attribution _:902935 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:902975 a rdf:Statement ;
up:source unirule:MF_04026 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:902976 a rdf:Statement ;
up:attribution _:902936 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:902977 a rdf:Statement ;
up:source unirule:MF_04026 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:902978 a rdf:Statement ;
up:attribution _:902937 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:902979 a rdf:Statement ;
up:source unirule:MF_04026 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:902980 a rdf:Statement ;
up:attribution _:902938 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:902981 a rdf:Statement ;
up:source unirule:MF_04026 ;
rdf:subject ?pfs90 ;
rdf:predicate up:annotation ;
rdf:object ?annotation91 .
_:902982 a rdf:Statement ;
up:attribution _:902939 ;
rdf:subject ?pfs90 ;
rdf:predicate up:annotation ;
rdf:object ?annotation91 .
_:902983 a rdf:Statement ;
up:source unirule:MF_04026 ;
rdf:subject ?pfs96 ;
rdf:predicate up:annotation ;
rdf:object ?annotation97 .
_:902984 a rdf:Statement ;
up:attribution _:902940 ;
rdf:subject ?pfs96 ;
rdf:predicate up:annotation ;
rdf:object ?annotation97 .
_:902985 a rdf:Statement ;
up:source unirule:MF_04026 ;
rdf:subject ?pfs102 ;
rdf:predicate up:annotation ;
rdf:object ?annotation103 .
_:902986 a rdf:Statement ;
up:attribution _:902941 ;
rdf:subject ?pfs102 ;
rdf:predicate up:annotation ;
rdf:object ?annotation103 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04026
#Rule MF_04026 Created by:? on:2016-04-28 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon108 {taxon:10293 taxon:10374}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04026 .
?thisOrganism rdfs:subClassOf+ ?supertaxon108 .
BIND(URI(CONCAT(STR(?this), '#MF_04026a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04026a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04026a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04026a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04026a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_04026a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionP08543114 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543116 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08543MF_04026109 .
?templateMotifSequenceMatchRegionP08543114 faldo:begin ?templateMotifSequenceMatchBeginP08543115 .
?templateMotifSequenceMatchBeginP08543115 faldo:position ?templateMotifSequenceMatchBeginPositionP08543110 ;
faldo:reference isoform:P08543-1 .
?templateMotifSequenceProfileAlignmentOperationP08543116 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026120 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08543MF_04026111 .
?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026119 .
?targetMotifMatchRegionMatchBeginMF_04026119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026112 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04026120 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026109, 1, (STRLEN(?templateMotifCigarP08543MF_04026109) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026109, CONCAT('^(?:-*[^-]){', STR(((581 - ?templateMotifSequenceMatchBeginPositionP08543110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026111, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026111) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026111, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026111) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_04026112) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026109, 1, (STRLEN(?templateMotifCigarP08543MF_04026109) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026109, CONCAT('^(?:-*[^-]){', STR(((582 - ?templateMotifSequenceMatchBeginPositionP08543110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026111, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026111) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026111, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026111) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) .
BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_04026112) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)) = 'SC')) .
BIND(URI(CONCAT(STR(?this), '#MF_04026a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch130 faldo:location ?templateMotifSequenceMatchRegionP08543131 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543133 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08543MF_04026126 .
?templateMotifSequenceMatchRegionP08543131 faldo:begin ?templateMotifSequenceMatchBeginP08543132 .
?templateMotifSequenceMatchBeginP08543132 faldo:position ?templateMotifSequenceMatchBeginPositionP08543127 ;
faldo:reference isoform:P08543-1 .
?templateMotifSequenceProfileAlignmentOperationP08543133 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
?targetMotifMatch134 faldo:location ?targetMotifMatchRegionMatch135 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026137 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08543MF_04026128 .
?targetMotifMatchRegionMatch135 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026136 .
?targetMotifMatchRegionMatchBeginMF_04026136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026129 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04026137 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026126, 1, (STRLEN(?templateMotifCigarP08543MF_04026126) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026126, CONCAT('^(?:-*[^-]){', STR(((791 - ?templateMotifSequenceMatchBeginPositionP08543127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026128, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026128) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026128, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026128) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) .
BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_04026129) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026126, 1, (STRLEN(?templateMotifCigarP08543MF_04026126) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026126, CONCAT('^(?:-*[^-]){', STR(((795 - ?templateMotifSequenceMatchBeginPositionP08543127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026128, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026128) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026128, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026128) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_04026129) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse19) .
FILTER (REGEX('NLC[TA]E', SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04026a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch147 faldo:location ?templateMotifSequenceMatchRegionP08543148 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543150 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08543MF_04026143 .
?templateMotifSequenceMatchRegionP08543148 faldo:begin ?templateMotifSequenceMatchBeginP08543149 .
?templateMotifSequenceMatchBeginP08543149 faldo:position ?templateMotifSequenceMatchBeginPositionP08543144 ;
faldo:reference isoform:P08543-1 .
?templateMotifSequenceProfileAlignmentOperationP08543150 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
?targetMotifMatch151 faldo:location ?targetMotifMatchRegionMatch152 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026154 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08543MF_04026145 .
?targetMotifMatchRegionMatch152 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026153 .
?targetMotifMatchRegionMatchBeginMF_04026153 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026146 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04026154 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026143, 1, (STRLEN(?templateMotifCigarP08543MF_04026143) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026143, CONCAT('^(?:-*[^-]){', STR(((968 - ?templateMotifSequenceMatchBeginPositionP08543144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026145, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026145) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026145, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026145) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) .
BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_04026146) - 1) AS ?thisPositionOn30) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026143, 1, (STRLEN(?templateMotifCigarP08543MF_04026143) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026143, CONCAT('^(?:-*[^-]){', STR(((972 - ?templateMotifSequenceMatchBeginPositionP08543144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026145, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026145) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026145, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026145) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) .
BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_04026146) - 1) AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t159) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse27) .
FILTER (REGEX('PT[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][SCT]', SUBSTR(?thisSequenceValue, ?thisPositionOn30, (?thisPositionOn31 - ?thisPositionOn30)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04026a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionP08543165 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543167 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08543MF_04026160 .
?templateMotifSequenceMatchRegionP08543165 faldo:begin ?templateMotifSequenceMatchBeginP08543166 .
?templateMotifSequenceMatchBeginP08543166 faldo:position ?templateMotifSequenceMatchBeginPositionP08543161 ;
faldo:reference isoform:P08543-1 .
?templateMotifSequenceProfileAlignmentOperationP08543167 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026171 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08543MF_04026162 .
?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026170 .
?targetMotifMatchRegionMatchBeginMF_04026170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026163 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04026171 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026160, 1, (STRLEN(?templateMotifCigarP08543MF_04026160) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026160, CONCAT('^(?:-*[^-]){', STR(((791 - ?templateMotifSequenceMatchBeginPositionP08543161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026162, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026162) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026162, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026162) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) .
BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_04026163) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t174) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_04026a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionP08543180 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543182 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08543MF_04026175 .
?templateMotifSequenceMatchRegionP08543180 faldo:begin ?templateMotifSequenceMatchBeginP08543181 .
?templateMotifSequenceMatchBeginP08543181 faldo:position ?templateMotifSequenceMatchBeginPositionP08543176 ;
faldo:reference isoform:P08543-1 .
?templateMotifSequenceProfileAlignmentOperationP08543182 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026186 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08543MF_04026177 .
?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026185 .
?targetMotifMatchRegionMatchBeginMF_04026185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026178 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04026186 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026175, 1, (STRLEN(?templateMotifCigarP08543MF_04026175) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026175, CONCAT('^(?:-*[^-]){', STR(((793 - ?templateMotifSequenceMatchBeginPositionP08543176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026177, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026177) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026177, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026177) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) .
BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_04026178) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t189) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04026a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionP08543195 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543197 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08543MF_04026190 .
?templateMotifSequenceMatchRegionP08543195 faldo:begin ?templateMotifSequenceMatchBeginP08543196 .
?templateMotifSequenceMatchBeginP08543196 faldo:position ?templateMotifSequenceMatchBeginPositionP08543191 ;
faldo:reference isoform:P08543-1 .
?templateMotifSequenceProfileAlignmentOperationP08543197 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026201 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08543MF_04026192 .
?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026200 .
?targetMotifMatchRegionMatchBeginMF_04026200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026193 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04026201 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026190, 1, (STRLEN(?templateMotifCigarP08543MF_04026190) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026190, CONCAT('^(?:-*[^-]){', STR(((795 - ?templateMotifSequenceMatchBeginPositionP08543191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026192, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026192) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026192, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026192) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_04026193) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_04026a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionP08543210 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543212 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08543MF_04026205 .
?templateMotifSequenceMatchRegionP08543210 faldo:begin ?templateMotifSequenceMatchBeginP08543211 .
?templateMotifSequenceMatchBeginP08543211 faldo:position ?templateMotifSequenceMatchBeginPositionP08543206 ;
faldo:reference isoform:P08543-1 .
?templateMotifSequenceProfileAlignmentOperationP08543212 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026216 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08543MF_04026207 .
?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026215 .
?targetMotifMatchRegionMatchBeginMF_04026215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026208 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04026216 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026205, 1, (STRLEN(?templateMotifCigarP08543MF_04026205) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026205, CONCAT('^(?:-*[^-]){', STR(((566 - ?templateMotifSequenceMatchBeginPositionP08543206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026207, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026207) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026207, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026207) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) .
BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_04026208) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t219) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_04026a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionP08543225 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543227 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08543MF_04026220 .
?templateMotifSequenceMatchRegionP08543225 faldo:begin ?templateMotifSequenceMatchBeginP08543226 .
?templateMotifSequenceMatchBeginP08543226 faldo:position ?templateMotifSequenceMatchBeginPositionP08543221 ;
faldo:reference isoform:P08543-1 .
?templateMotifSequenceProfileAlignmentOperationP08543227 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026231 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08543MF_04026222 .
?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026230 .
?targetMotifMatchRegionMatchBeginMF_04026230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026223 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04026231 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026220, 1, (STRLEN(?templateMotifCigarP08543MF_04026220) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026220, CONCAT('^(?:-*[^-]){', STR(((612 - ?templateMotifSequenceMatchBeginPositionP08543221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026222, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026222) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026222, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026222) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) .
BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_04026223) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs1t234) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_04026a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch239 faldo:location ?templateMotifSequenceMatchRegionP08543240 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543242 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08543MF_04026235 .
?templateMotifSequenceMatchRegionP08543240 faldo:begin ?templateMotifSequenceMatchBeginP08543241 .
?templateMotifSequenceMatchBeginP08543241 faldo:position ?templateMotifSequenceMatchBeginPositionP08543236 ;
faldo:reference isoform:P08543-1 .
?templateMotifSequenceProfileAlignmentOperationP08543242 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
?targetMotifMatch243 faldo:location ?targetMotifMatchRegionMatch244 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026246 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08543MF_04026237 .
?targetMotifMatchRegionMatch244 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026245 .
?targetMotifMatchRegionMatchBeginMF_04026245 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026238 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04026246 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026235, 1, (STRLEN(?templateMotifCigarP08543MF_04026235) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026235, CONCAT('^(?:-*[^-]){', STR(((582 - ?templateMotifSequenceMatchBeginPositionP08543236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1247) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026237, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026237) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026237, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026237) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), '')))), '[^-]', ''))) AS ?step2248) .
BIND(((?step2248 + ?targetMotifMatchRegionMatchBeginPositionMF_04026238) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs1t249) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse69) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04026a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch254 faldo:location ?templateMotifSequenceMatchRegionP08543255 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543257 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08543MF_04026250 .
?templateMotifSequenceMatchRegionP08543255 faldo:begin ?templateMotifSequenceMatchBeginP08543256 .
?templateMotifSequenceMatchBeginP08543256 faldo:position ?templateMotifSequenceMatchBeginPositionP08543251 ;
faldo:reference isoform:P08543-1 .
?templateMotifSequenceProfileAlignmentOperationP08543257 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
?targetMotifMatch258 faldo:location ?targetMotifMatchRegionMatch259 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026261 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08543MF_04026252 .
?targetMotifMatchRegionMatch259 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026260 .
?targetMotifMatchRegionMatchBeginMF_04026260 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026253 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04026261 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026250, 1, (STRLEN(?templateMotifCigarP08543MF_04026250) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026250, CONCAT('^(?:-*[^-]){', STR(((808 - ?templateMotifSequenceMatchBeginPositionP08543251) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1262) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026252, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026252) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026252, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026252) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), '')))), '[^-]', ''))) AS ?step2263) .
BIND(((?step2263 + ?targetMotifMatchRegionMatchBeginPositionMF_04026253) - 1) AS ?thisPositionOn76) .
BIND(?thisPositionOn76 AS ?thisPositionOn77) .
BIND(?this AS ?pfs1t264) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse75) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04026a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch269 faldo:location ?templateMotifSequenceMatchRegionP08543270 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543272 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08543MF_04026265 .
?templateMotifSequenceMatchRegionP08543270 faldo:begin ?templateMotifSequenceMatchBeginP08543271 .
?templateMotifSequenceMatchBeginP08543271 faldo:position ?templateMotifSequenceMatchBeginPositionP08543266 ;
faldo:reference isoform:P08543-1 .
?templateMotifSequenceProfileAlignmentOperationP08543272 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
?targetMotifMatch273 faldo:location ?targetMotifMatchRegionMatch274 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026276 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08543MF_04026267 .
?targetMotifMatchRegionMatch274 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026275 .
?targetMotifMatchRegionMatchBeginMF_04026275 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026268 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04026276 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026265, 1, (STRLEN(?templateMotifCigarP08543MF_04026265) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026265, CONCAT('^(?:-*[^-]){', STR(((1111 - ?templateMotifSequenceMatchBeginPositionP08543266) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1277) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026267, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026267) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026267, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026267) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), '')))), '[^-]', ''))) AS ?step2278) .
BIND(((?step2278 + ?targetMotifMatchRegionMatchBeginPositionMF_04026268) - 1) AS ?thisPositionOn82) .
BIND(?thisPositionOn82 AS ?thisPositionOn83) .
BIND(?this AS ?pfs1t279) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse81) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_04026a79')) AS ?annotation79) .
BIND(?this AS ?pfs78) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch284 faldo:location ?templateMotifSequenceMatchRegionP08543285 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543287 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08543MF_04026280 .
?templateMotifSequenceMatchRegionP08543285 faldo:begin ?templateMotifSequenceMatchBeginP08543286 .
?templateMotifSequenceMatchBeginP08543286 faldo:position ?templateMotifSequenceMatchBeginPositionP08543281 ;
faldo:reference isoform:P08543-1 .
?templateMotifSequenceProfileAlignmentOperationP08543287 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
?targetMotifMatch288 faldo:location ?targetMotifMatchRegionMatch289 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026291 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08543MF_04026282 .
?targetMotifMatchRegionMatch289 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026290 .
?targetMotifMatchRegionMatchBeginMF_04026290 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026283 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04026291 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026280, 1, (STRLEN(?templateMotifCigarP08543MF_04026280) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026280, CONCAT('^(?:-*[^-]){', STR(((1112 - ?templateMotifSequenceMatchBeginPositionP08543281) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1292) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026282, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026282) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026282, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026282) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), '')))), '[^-]', ''))) AS ?step2293) .
BIND(((?step2293 + ?targetMotifMatchRegionMatchBeginPositionMF_04026283) - 1) AS ?thisPositionOn88) .
BIND(?thisPositionOn88 AS ?thisPositionOn89) .
BIND(?this AS ?pfs1t294) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfsb86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfse87) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn88, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_04026a85')) AS ?annotation85) .
BIND(?this AS ?pfs84) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch299 faldo:location ?templateMotifSequenceMatchRegionP08543300 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543302 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08543MF_04026295 .
?templateMotifSequenceMatchRegionP08543300 faldo:begin ?templateMotifSequenceMatchBeginP08543301 .
?templateMotifSequenceMatchBeginP08543301 faldo:position ?templateMotifSequenceMatchBeginPositionP08543296 ;
faldo:reference isoform:P08543-1 .
?templateMotifSequenceProfileAlignmentOperationP08543302 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
?targetMotifMatch303 faldo:location ?targetMotifMatchRegionMatch304 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026306 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08543MF_04026297 .
?targetMotifMatchRegionMatch304 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026305 .
?targetMotifMatchRegionMatchBeginMF_04026305 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026298 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04026306 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026295, 1, (STRLEN(?templateMotifCigarP08543MF_04026295) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026295, CONCAT('^(?:-*[^-]){', STR(((1132 - ?templateMotifSequenceMatchBeginPositionP08543296) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1307) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026297, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026297) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026297, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026297) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), '')))), '[^-]', ''))) AS ?step2308) .
BIND(((?step2308 + ?targetMotifMatchRegionMatchBeginPositionMF_04026298) - 1) AS ?thisPositionOn94) .
BIND(?thisPositionOn94 AS ?thisPositionOn95) .
BIND(?this AS ?pfs1t309) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse93) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn94, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04026a91')) AS ?annotation91) .
BIND(?this AS ?pfs90) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch314 faldo:location ?templateMotifSequenceMatchRegionP08543315 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543317 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08543MF_04026310 .
?templateMotifSequenceMatchRegionP08543315 faldo:begin ?templateMotifSequenceMatchBeginP08543316 .
?templateMotifSequenceMatchBeginP08543316 faldo:position ?templateMotifSequenceMatchBeginPositionP08543311 ;
faldo:reference isoform:P08543-1 .
?templateMotifSequenceProfileAlignmentOperationP08543317 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
?targetMotifMatch318 faldo:location ?targetMotifMatchRegionMatch319 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026321 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08543MF_04026312 .
?targetMotifMatchRegionMatch319 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026320 .
?targetMotifMatchRegionMatchBeginMF_04026320 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026313 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04026321 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026310, 1, (STRLEN(?templateMotifCigarP08543MF_04026310) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026310, CONCAT('^(?:-*[^-]){', STR(((1135 - ?templateMotifSequenceMatchBeginPositionP08543311) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1322) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026312, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026312) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1322), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026312, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026312) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1322), '}'), '')))), '[^-]', ''))) AS ?step2323) .
BIND(((?step2323 + ?targetMotifMatchRegionMatchBeginPositionMF_04026313) - 1) AS ?thisPositionOn100) .
BIND(?thisPositionOn100 AS ?thisPositionOn101) .
BIND(?this AS ?pfs1t324) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfsb98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfse99) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn100, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04026a97')) AS ?annotation97) .
BIND(?this AS ?pfs96) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch329 faldo:location ?templateMotifSequenceMatchRegionP08543330 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08543332 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08543MF_04026325 .
?templateMotifSequenceMatchRegionP08543330 faldo:begin ?templateMotifSequenceMatchBeginP08543331 .
?templateMotifSequenceMatchBeginP08543331 faldo:position ?templateMotifSequenceMatchBeginPositionP08543326 ;
faldo:reference isoform:P08543-1 .
?templateMotifSequenceProfileAlignmentOperationP08543332 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
?targetMotifMatch333 faldo:location ?targetMotifMatchRegionMatch334 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04026336 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08543MF_04026327 .
?targetMotifMatchRegionMatch334 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04026335 .
?targetMotifMatchRegionMatchBeginMF_04026335 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04026328 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04026336 edam:has_input signature:MF_04026 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026325, 1, (STRLEN(?templateMotifCigarP08543MF_04026325) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026325, CONCAT('^(?:-*[^-]){', STR(((582 - ?templateMotifSequenceMatchBeginPositionP08543326) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1337) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026327, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026327) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1337), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026327, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026327) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1337), '}'), '')))), '[^-]', ''))) AS ?step2338) .
BIND(((?step2338 + ?targetMotifMatchRegionMatchBeginPositionMF_04026328) - 1) AS ?thisPositionOn106) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08543MF_04026325, 1, (STRLEN(?templateMotifCigarP08543MF_04026325) - STRLEN(REPLACE(?templateMotifCigarP08543MF_04026325, CONCAT('^(?:-*[^-]){', STR(((808 - ?templateMotifSequenceMatchBeginPositionP08543326) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1339) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08543MF_04026327, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026327) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08543MF_04026327, 1, (STRLEN(?targetMotifMatchCigarP08543MF_04026327) - STRLEN(REPLACE(?targetMotifMatchCigarP08543MF_04026327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), '')))), '[^-]', ''))) AS ?step2340) .
BIND(((?step2340 + ?targetMotifMatchRegionMatchBeginPositionMF_04026328) - 1) AS ?thisPositionOn107) .
BIND(?this AS ?pfs1t341) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfsb104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfse105) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn106, (?thisPositionOn107 - ?thisPositionOn106)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04026a103')) AS ?annotation103) .
BIND(?this AS ?pfs102) .
}
}
"xsd:string |
