| http://purl.uniprot.org/unirules/MF_04032#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:905656 up:source unirule:MF_04032 .
_:905657 up:source unirule:MF_04032 .
_:905658 up:source unirule:MF_04032 .
_:905659 up:source unirule:MF_04032 .
_:905660 up:source unirule:MF_04032 .
_:905661 up:source unirule:MF_04032 .
_:905662 up:source unirule:MF_04032 .
_:905663 up:source unirule:MF_04032 .
_:905664 up:source unirule:MF_04032 .
_:905665 up:source unirule:MF_04032 .
_:905666 up:source unirule:MF_04032 .
_:905667 up:source unirule:MF_04032 .
_:905668 up:source unirule:MF_04032 .
_:905669 up:source unirule:MF_04032 .
_:905670 up:source unirule:MF_04032 .
_:905671 up:source unirule:MF_04032 .
_:905672 up:source unirule:MF_04032 .
_:905673 up:source unirule:MF_04032 .
_:905674 up:source unirule:MF_04032 .
_:905675 up:source unirule:MF_04032 .
_:905676 up:source unirule:MF_04032 .
_:905677 up:source unirule:MF_04032 .
_:905678 up:source unirule:MF_04032 .
_:905679 up:source unirule:MF_04032 .
_:905680 up:source unirule:MF_04032 .
_:905681 up:source unirule:MF_04032 .
_:905682 up:source unirule:MF_04032 .
_:905683 up:source unirule:MF_04032 .
_:905684 up:source unirule:MF_04032 .
_:905685 up:source unirule:MF_04032 .
_:905686 up:source unirule:MF_04032 .
_:905687 up:source unirule:MF_04032 .
_:905688 up:source unirule:MF_04032 .
_:905689 up:source unirule:MF_04032 .
_:905690 up:source unirule:MF_04032 .
_:905691 up:source unirule:MF_04032 .
_:905692 up:source unirule:MF_04032 .
_:905693 up:source unirule:MF_04032 .
_:905694 up:source unirule:MF_04032 .
_:905695 up:source unirule:MF_04032 .
_:905696 up:source unirule:MF_04032 .
_:905697 up:source unirule:MF_04032 .
_:905698 up:source unirule:MF_04032 .
_:905699 up:source unirule:MF_04032 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation9 ;
up:classifiedWith GO:0016020 ,
GO:0019031 ,
GO:0019062 ,
GO:0020002 ,
GO:0044175 ,
GO:0044178 ,
GO:0046718 ,
GO:0055036 ,
keyword:1015 ,
keyword:1032 ,
keyword:1039 ,
keyword:1040 ,
keyword:1043 ,
keyword:1133 ,
keyword:1160 ,
keyword:1161 ,
keyword:261 ,
keyword:325 ,
keyword:472 ,
keyword:732 ,
keyword:812 ,
keyword:945 ,
keyword:946 ;
up:precursor "true"^^xsd:boolean ;
up:recommendedName ?name0 .
?name0 up:fullName 'Envelope glycoprotein B' ;
up:shortName 'gB' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'gB' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Envelope glycoprotein that forms spikes at the surface of virion envelope. Essential for the initial attachment to heparan sulfate moities of the host cell surface proteoglycans. Involved in fusion of viral and cellular membranes leading to virus entry into the host cell. Following initial binding to its host receptors, membrane fusion is mediated by the fusion machinery composed at least of gB and the heterodimer gH/gL. May be involved in the fusion between the virion envelope and the outer nuclear membrane during virion egress.' .
?annotation3 a up:Subunit_Annotation ;
rdfs:comment 'Homotrimer; disulfide-linked. Binds to heparan sulfate proteoglycans. Interacts with gH/gL heterodimer.' .
?annotation4 a up:Subcellular_Location_Annotation ;
rdfs:comment 'During virion morphogenesis, this protein probably accumulates in the endosomes and trans-Golgi where secondary envelopment occurs. It is probably transported to the cell surface from where it is endocytosed and directed to the trans-Golgi network (TGN)' .
?annotation4li5 up:cellularComponent .
?annotation4li6 up:cellularComponent .
?annotation4li7 up:cellularComponent .
?annotation4li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the herpesviridae glycoprotein B family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Virion surface' .
?pfsb12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Intravirion' .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Involved in fusion and/or binding to host membrane' .
?pfsb30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Involved in fusion and/or binding to host membrane' .
?pfsb36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Hydrophobic membrane proximal region' .
?pfsb42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Golgi targeting' .
?pfsb48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Internalization motif' .
?pfsb54 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb60 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb66 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb72 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfs76 up:annotation ?annotation77 .
?annotation77 faldo:begin ?pfsb78 ;
faldo:end ?pfse79 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb78 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse79 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?pfs82 up:annotation ?annotation83 .
?annotation83 faldo:begin ?pfsb84 ;
faldo:end ?pfse85 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb84 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfse85 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?sam88 up:classifiedWith keyword:732 .
?signal89 faldo:begin ?signalb90 ;
faldo:end ?signale91 .
?signalb90 faldo:position ?signalbp92 .
?signale91 faldo:position ?signalep93 .
?keyword94 up:range ?signal89 .
_:905700 a rdf:Statement ;
up:attribution _:905656 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:905701 a rdf:Statement ;
up:attribution _:905657 ;
rdf:subject ?this ;
rdf:predicate up:precursor ;
rdf:object "true"^^xsd:boolean .
_:905702 a rdf:Statement ;
up:attribution _:905658 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:905703 a rdf:Statement ;
up:attribution _:905659 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:905704 a rdf:Statement ;
up:attribution _:905660 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:905705 a rdf:Statement ;
up:attribution _:905661 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:905706 a rdf:Statement ;
up:attribution _:905662 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:905707 a rdf:Statement ;
up:attribution _:905663 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:905708 a rdf:Statement ;
up:attribution _:905664 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:325 .
_:905709 a rdf:Statement ;
up:attribution _:905665 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1032 .
_:905710 a rdf:Statement ;
up:attribution _:905666 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1039 .
_:905711 a rdf:Statement ;
up:attribution _:905667 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1040 .
_:905712 a rdf:Statement ;
up:attribution _:905668 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1043 .
_:905713 a rdf:Statement ;
up:attribution _:905669 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:945 .
_:905714 a rdf:Statement ;
up:attribution _:905670 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:905715 a rdf:Statement ;
up:attribution _:905671 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
_:905716 a rdf:Statement ;
up:attribution _:905672 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:905717 a rdf:Statement ;
up:attribution _:905673 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:905718 a rdf:Statement ;
up:attribution _:905674 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1161 .
_:905719 a rdf:Statement ;
up:attribution _:905675 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:261 .
_:905720 a rdf:Statement ;
up:attribution _:905676 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:905721 a rdf:Statement ;
up:attribution _:905677 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1160 .
_:905722 a rdf:Statement ;
up:attribution _:905678 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044175 .
_:905723 a rdf:Statement ;
up:attribution _:905679 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044178 .
_:905724 a rdf:Statement ;
up:attribution _:905680 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0020002 .
_:905725 a rdf:Statement ;
up:attribution _:905681 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016020 .
_:905726 a rdf:Statement ;
up:attribution _:905682 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019031 .
_:905727 a rdf:Statement ;
up:attribution _:905683 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0055036 .
_:905728 a rdf:Statement ;
up:attribution _:905684 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046718 .
_:905729 a rdf:Statement ;
up:attribution _:905685 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019062 .
_:905730 a rdf:Statement ;
up:source unirule:MF_04032 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:905731 a rdf:Statement ;
up:attribution _:905686 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:905732 a rdf:Statement ;
up:source unirule:MF_04032 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:905733 a rdf:Statement ;
up:attribution _:905687 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:905734 a rdf:Statement ;
up:source unirule:MF_04032 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:905735 a rdf:Statement ;
up:attribution _:905688 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:905736 a rdf:Statement ;
up:source unirule:MF_04032 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:905737 a rdf:Statement ;
up:attribution _:905689 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:905738 a rdf:Statement ;
up:source unirule:MF_04032 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:905739 a rdf:Statement ;
up:attribution _:905690 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:905740 a rdf:Statement ;
up:source unirule:MF_04032 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:905741 a rdf:Statement ;
up:attribution _:905691 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:905742 a rdf:Statement ;
up:source unirule:MF_04032 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:905743 a rdf:Statement ;
up:attribution _:905692 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:905744 a rdf:Statement ;
up:source unirule:MF_04032 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:905745 a rdf:Statement ;
up:attribution _:905693 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:905746 a rdf:Statement ;
up:source unirule:MF_04032 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:905747 a rdf:Statement ;
up:attribution _:905694 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:905748 a rdf:Statement ;
up:source unirule:MF_04032 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:905749 a rdf:Statement ;
up:attribution _:905695 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:905750 a rdf:Statement ;
up:source unirule:MF_04032 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:905751 a rdf:Statement ;
up:attribution _:905696 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:905752 a rdf:Statement ;
up:source unirule:MF_04032 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:905753 a rdf:Statement ;
up:attribution _:905697 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:905754 a rdf:Statement ;
up:source unirule:MF_04032 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:905755 a rdf:Statement ;
up:attribution _:905698 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:905756 a rdf:Statement ;
up:attribution _:905699 ;
rdf:subject ?sam88 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04032
#Rule MF_04032 Created by:? on:2016-05-12 Modified by:Catherine Rivoire on:2024-03-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04032 .
?thisOrganism rdfs:subClassOf+ taxon:10292 .
BIND(URI(CONCAT(STR(?this), '#MF_04032a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04032a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_04032a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04032a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04032a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch99 faldo:location ?templateMotifSequenceMatchRegionP10211100 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP10211102 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10211MF_0403295 .
?templateMotifSequenceMatchRegionP10211100 faldo:begin ?templateMotifSequenceMatchBeginP10211101 .
?templateMotifSequenceMatchBeginP10211101 faldo:position ?templateMotifSequenceMatchBeginPositionP1021196 ;
faldo:reference isoform:P10211-1 .
?templateMotifSequenceProfileAlignmentOperationP10211102 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
?targetMotifMatch103 faldo:location ?targetMotifMatchRegionMatch104 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04032106 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10211MF_0403297 .
?targetMotifMatchRegionMatch104 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04032105 .
?targetMotifMatchRegionMatchBeginMF_04032105 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0403298 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04032106 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10211MF_0403295, 1, (STRLEN(?templateMotifCigarP10211MF_0403295) - STRLEN(REPLACE(?templateMotifCigarP10211MF_0403295, CONCAT('^(?:-*[^-]){', STR(((774 - ?templateMotifSequenceMatchBeginPositionP1021196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10211MF_0403297, 1, (STRLEN(?targetMotifMatchCigarP10211MF_0403297) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_0403297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10211MF_0403297, 1, (STRLEN(?targetMotifMatchCigarP10211MF_0403297) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_0403297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0403298) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) .
FILTER ((BOUND(?thisPositionOn14) && BOUND(?thisPositionOn15))) .
BIND(URI(CONCAT(STR(?this), '#MF_04032a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch114 faldo:location ?templateMotifSequenceMatchRegionP10211115 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP10211117 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10211MF_04032110 .
?templateMotifSequenceMatchRegionP10211115 faldo:begin ?templateMotifSequenceMatchBeginP10211116 .
?templateMotifSequenceMatchBeginP10211116 faldo:position ?templateMotifSequenceMatchBeginPositionP10211111 ;
faldo:reference isoform:P10211-1 .
?templateMotifSequenceProfileAlignmentOperationP10211117 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
?targetMotifMatch118 faldo:location ?targetMotifMatchRegionMatch119 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04032121 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10211MF_04032112 .
?targetMotifMatchRegionMatch119 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04032120 .
?targetMotifMatchRegionMatchBeginMF_04032120 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04032113 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04032121 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10211MF_04032110, 1, (STRLEN(?templateMotifCigarP10211MF_04032110) - STRLEN(REPLACE(?templateMotifCigarP10211MF_04032110, CONCAT('^(?:-*[^-]){', STR(((775 - ?templateMotifSequenceMatchBeginPositionP10211111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10211MF_04032112, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032112) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10211MF_04032112, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032112) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) .
BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_04032113) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10211MF_04032110, 1, (STRLEN(?templateMotifCigarP10211MF_04032110) - STRLEN(REPLACE(?templateMotifCigarP10211MF_04032110, CONCAT('^(?:-*[^-]){', STR(((795 - ?templateMotifSequenceMatchBeginPositionP10211111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10211MF_04032112, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032112) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10211MF_04032112, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032112) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_04032113) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER ((BOUND(?thisPositionOn20) && BOUND(?thisPositionOn21))) .
BIND(URI(CONCAT(STR(?this), '#MF_04032a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionP10211132 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP10211134 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10211MF_04032127 .
?templateMotifSequenceMatchRegionP10211132 faldo:begin ?templateMotifSequenceMatchBeginP10211133 .
?templateMotifSequenceMatchBeginP10211133 faldo:position ?templateMotifSequenceMatchBeginPositionP10211128 ;
faldo:reference isoform:P10211-1 .
?templateMotifSequenceProfileAlignmentOperationP10211134 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04032138 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10211MF_04032129 .
?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04032137 .
?targetMotifMatchRegionMatchBeginMF_04032137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04032130 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04032138 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10211MF_04032127, 1, (STRLEN(?templateMotifCigarP10211MF_04032127) - STRLEN(REPLACE(?templateMotifCigarP10211MF_04032127, CONCAT('^(?:-*[^-]){', STR(((796 - ?templateMotifSequenceMatchBeginPositionP10211128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10211MF_04032129, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032129) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10211MF_04032129, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032129) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) .
BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_04032130) - 1) AS ?thisPositionOn26) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t141) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER ((BOUND(?thisPositionOn26) && BOUND(?thisPositionOn27))) .
BIND(URI(CONCAT(STR(?this), '#MF_04032a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch146 faldo:location ?templateMotifSequenceMatchRegionP10211147 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP10211149 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10211MF_04032142 .
?templateMotifSequenceMatchRegionP10211147 faldo:begin ?templateMotifSequenceMatchBeginP10211148 .
?templateMotifSequenceMatchBeginP10211148 faldo:position ?templateMotifSequenceMatchBeginPositionP10211143 ;
faldo:reference isoform:P10211-1 .
?templateMotifSequenceProfileAlignmentOperationP10211149 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
?targetMotifMatch150 faldo:location ?targetMotifMatchRegionMatch151 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04032153 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10211MF_04032144 .
?targetMotifMatchRegionMatch151 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04032152 .
?targetMotifMatchRegionMatchBeginMF_04032152 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04032145 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04032153 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10211MF_04032142, 1, (STRLEN(?templateMotifCigarP10211MF_04032142) - STRLEN(REPLACE(?templateMotifCigarP10211MF_04032142, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionP10211143) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10211MF_04032144, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032144) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10211MF_04032144, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032144) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), '')))), '[^-]', ''))) AS ?step2155) .
BIND(((?step2155 + ?targetMotifMatchRegionMatchBeginPositionMF_04032145) - 1) AS ?thisPositionOn32) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10211MF_04032142, 1, (STRLEN(?templateMotifCigarP10211MF_04032142) - STRLEN(REPLACE(?templateMotifCigarP10211MF_04032142, CONCAT('^(?:-*[^-]){', STR(((179 - ?templateMotifSequenceMatchBeginPositionP10211143) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10211MF_04032144, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032144) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10211MF_04032144, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032144) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) .
BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_04032145) - 1) AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t158) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) .
FILTER ((BOUND(?thisPositionOn32) && BOUND(?thisPositionOn33))) .
BIND(URI(CONCAT(STR(?this), '#MF_04032a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch163 faldo:location ?templateMotifSequenceMatchRegionP10211164 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP10211166 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10211MF_04032159 .
?templateMotifSequenceMatchRegionP10211164 faldo:begin ?templateMotifSequenceMatchBeginP10211165 .
?templateMotifSequenceMatchBeginP10211165 faldo:position ?templateMotifSequenceMatchBeginPositionP10211160 ;
faldo:reference isoform:P10211-1 .
?templateMotifSequenceProfileAlignmentOperationP10211166 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
?targetMotifMatch167 faldo:location ?targetMotifMatchRegionMatch168 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04032170 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10211MF_04032161 .
?targetMotifMatchRegionMatch168 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04032169 .
?targetMotifMatchRegionMatchBeginMF_04032169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04032162 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04032170 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10211MF_04032159, 1, (STRLEN(?templateMotifCigarP10211MF_04032159) - STRLEN(REPLACE(?templateMotifCigarP10211MF_04032159, CONCAT('^(?:-*[^-]){', STR(((258 - ?templateMotifSequenceMatchBeginPositionP10211160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10211MF_04032161, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032161) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10211MF_04032161, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032161) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) .
BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_04032162) - 1) AS ?thisPositionOn38) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10211MF_04032159, 1, (STRLEN(?templateMotifCigarP10211MF_04032159) - STRLEN(REPLACE(?templateMotifCigarP10211MF_04032159, CONCAT('^(?:-*[^-]){', STR(((265 - ?templateMotifSequenceMatchBeginPositionP10211160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10211MF_04032161, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032161) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10211MF_04032161, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032161) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) .
BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_04032162) - 1) AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t175) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) .
FILTER ((BOUND(?thisPositionOn38) && BOUND(?thisPositionOn39))) .
BIND(URI(CONCAT(STR(?this), '#MF_04032a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch180 faldo:location ?templateMotifSequenceMatchRegionP10211181 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP10211183 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10211MF_04032176 .
?templateMotifSequenceMatchRegionP10211181 faldo:begin ?templateMotifSequenceMatchBeginP10211182 .
?templateMotifSequenceMatchBeginP10211182 faldo:position ?templateMotifSequenceMatchBeginPositionP10211177 ;
faldo:reference isoform:P10211-1 .
?templateMotifSequenceProfileAlignmentOperationP10211183 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
?targetMotifMatch184 faldo:location ?targetMotifMatchRegionMatch185 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04032187 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10211MF_04032178 .
?targetMotifMatchRegionMatch185 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04032186 .
?targetMotifMatchRegionMatchBeginMF_04032186 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04032179 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04032187 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10211MF_04032176, 1, (STRLEN(?templateMotifCigarP10211MF_04032176) - STRLEN(REPLACE(?templateMotifCigarP10211MF_04032176, CONCAT('^(?:-*[^-]){', STR(((719 - ?templateMotifSequenceMatchBeginPositionP10211177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10211MF_04032178, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032178) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10211MF_04032178, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032178) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) .
BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_04032179) - 1) AS ?thisPositionOn44) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10211MF_04032176, 1, (STRLEN(?templateMotifCigarP10211MF_04032176) - STRLEN(REPLACE(?templateMotifCigarP10211MF_04032176, CONCAT('^(?:-*[^-]){', STR(((772 - ?templateMotifSequenceMatchBeginPositionP10211177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10211MF_04032178, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032178) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10211MF_04032178, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032178) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) .
BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_04032179) - 1) AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t192) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse43) .
FILTER ((BOUND(?thisPositionOn44) && BOUND(?thisPositionOn45))) .
BIND(URI(CONCAT(STR(?this), '#MF_04032a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch197 faldo:location ?templateMotifSequenceMatchRegionP10211198 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP10211200 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10211MF_04032193 .
?templateMotifSequenceMatchRegionP10211198 faldo:begin ?templateMotifSequenceMatchBeginP10211199 .
?templateMotifSequenceMatchBeginP10211199 faldo:position ?templateMotifSequenceMatchBeginPositionP10211194 ;
faldo:reference isoform:P10211-1 .
?templateMotifSequenceProfileAlignmentOperationP10211200 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
?targetMotifMatch201 faldo:location ?targetMotifMatchRegionMatch202 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04032204 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10211MF_04032195 .
?targetMotifMatchRegionMatch202 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04032203 .
?targetMotifMatchRegionMatchBeginMF_04032203 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04032196 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04032204 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10211MF_04032193, 1, (STRLEN(?templateMotifCigarP10211MF_04032193) - STRLEN(REPLACE(?templateMotifCigarP10211MF_04032193, CONCAT('^(?:-*[^-]){', STR(((849 - ?templateMotifSequenceMatchBeginPositionP10211194) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1205) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10211MF_04032195, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032195) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10211MF_04032195, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032195) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), '')))), '[^-]', ''))) AS ?step2206) .
BIND(((?step2206 + ?targetMotifMatchRegionMatchBeginPositionMF_04032196) - 1) AS ?thisPositionOn50) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10211MF_04032193, 1, (STRLEN(?templateMotifCigarP10211MF_04032193) - STRLEN(REPLACE(?templateMotifCigarP10211MF_04032193, CONCAT('^(?:-*[^-]){', STR(((852 - ?templateMotifSequenceMatchBeginPositionP10211194) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1207) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10211MF_04032195, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032195) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10211MF_04032195, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032195) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), '')))), '[^-]', ''))) AS ?step2208) .
BIND(((?step2208 + ?targetMotifMatchRegionMatchBeginPositionMF_04032196) - 1) AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t209) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse49) .
FILTER (REGEX('Y[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][LM]', SUBSTR(?thisSequenceValue, ?thisPositionOn50, (?thisPositionOn51 - ?thisPositionOn50)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04032a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch214 faldo:location ?templateMotifSequenceMatchRegionP10211215 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP10211217 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10211MF_04032210 .
?templateMotifSequenceMatchRegionP10211215 faldo:begin ?templateMotifSequenceMatchBeginP10211216 .
?templateMotifSequenceMatchBeginP10211216 faldo:position ?templateMotifSequenceMatchBeginPositionP10211211 ;
faldo:reference isoform:P10211-1 .
?templateMotifSequenceProfileAlignmentOperationP10211217 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
?targetMotifMatch218 faldo:location ?targetMotifMatchRegionMatch219 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04032221 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10211MF_04032212 .
?targetMotifMatchRegionMatch219 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04032220 .
?targetMotifMatchRegionMatchBeginMF_04032220 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04032213 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04032221 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10211MF_04032210, 1, (STRLEN(?templateMotifCigarP10211MF_04032210) - STRLEN(REPLACE(?templateMotifCigarP10211MF_04032210, CONCAT('^(?:-*[^-]){', STR(((889 - ?templateMotifSequenceMatchBeginPositionP10211211) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1222) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10211MF_04032212, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032212) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10211MF_04032212, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032212) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), '')))), '[^-]', ''))) AS ?step2223) .
BIND(((?step2223 + ?targetMotifMatchRegionMatchBeginPositionMF_04032213) - 1) AS ?thisPositionOn56) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10211MF_04032210, 1, (STRLEN(?templateMotifCigarP10211MF_04032210) - STRLEN(REPLACE(?templateMotifCigarP10211MF_04032210, CONCAT('^(?:-*[^-]){', STR(((892 - ?templateMotifSequenceMatchBeginPositionP10211211) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1224) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10211MF_04032212, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032212) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10211MF_04032212, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032212) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), '')))), '[^-]', ''))) AS ?step2225) .
BIND(((?step2225 + ?targetMotifMatchRegionMatchBeginPositionMF_04032213) - 1) AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t226) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse55) .
FILTER (REGEX('Y[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][VL]', SUBSTR(?thisSequenceValue, ?thisPositionOn56, (?thisPositionOn57 - ?thisPositionOn56)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04032a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch231 faldo:location ?templateMotifSequenceMatchRegionP10211232 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP10211234 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10211MF_04032227 .
?templateMotifSequenceMatchRegionP10211232 faldo:begin ?templateMotifSequenceMatchBeginP10211233 .
?templateMotifSequenceMatchBeginP10211233 faldo:position ?templateMotifSequenceMatchBeginPositionP10211228 ;
faldo:reference isoform:P10211-1 .
?templateMotifSequenceProfileAlignmentOperationP10211234 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
?targetMotifMatch235 faldo:location ?targetMotifMatchRegionMatch236 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04032238 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10211MF_04032229 .
?targetMotifMatchRegionMatch236 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04032237 .
?targetMotifMatchRegionMatchBeginMF_04032237 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04032230 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04032238 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10211MF_04032227, 1, (STRLEN(?templateMotifCigarP10211MF_04032227) - STRLEN(REPLACE(?templateMotifCigarP10211MF_04032227, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionP10211228) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1239) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10211MF_04032229, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032229) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10211MF_04032229, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032229) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), '')))), '[^-]', ''))) AS ?step2240) .
BIND(((?step2240 + ?targetMotifMatchRegionMatchBeginPositionMF_04032230) - 1) AS ?thisPositionOn62) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10211MF_04032227, 1, (STRLEN(?templateMotifCigarP10211MF_04032227) - STRLEN(REPLACE(?templateMotifCigarP10211MF_04032227, CONCAT('^(?:-*[^-]){', STR(((573 - ?templateMotifSequenceMatchBeginPositionP10211228) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1241) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10211MF_04032229, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032229) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10211MF_04032229, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032229) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), '')))), '[^-]', ''))) AS ?step2242) .
BIND(((?step2242 + ?targetMotifMatchRegionMatchBeginPositionMF_04032230) - 1) AS ?thisPositionOn63) .
BIND(?this AS ?pfs1t243) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse61) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn62, (?thisPositionOn63 - ?thisPositionOn62)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04032a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch248 faldo:location ?templateMotifSequenceMatchRegionP10211249 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP10211251 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10211MF_04032244 .
?templateMotifSequenceMatchRegionP10211249 faldo:begin ?templateMotifSequenceMatchBeginP10211250 .
?templateMotifSequenceMatchBeginP10211250 faldo:position ?templateMotifSequenceMatchBeginPositionP10211245 ;
faldo:reference isoform:P10211-1 .
?templateMotifSequenceProfileAlignmentOperationP10211251 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
?targetMotifMatch252 faldo:location ?targetMotifMatchRegionMatch253 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04032255 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10211MF_04032246 .
?targetMotifMatchRegionMatch253 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04032254 .
?targetMotifMatchRegionMatchBeginMF_04032254 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04032247 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04032255 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10211MF_04032244, 1, (STRLEN(?templateMotifCigarP10211MF_04032244) - STRLEN(REPLACE(?templateMotifCigarP10211MF_04032244, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionP10211245) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1256) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10211MF_04032246, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032246) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10211MF_04032246, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032246) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), '')))), '[^-]', ''))) AS ?step2257) .
BIND(((?step2257 + ?targetMotifMatchRegionMatchBeginPositionMF_04032247) - 1) AS ?thisPositionOn68) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10211MF_04032244, 1, (STRLEN(?templateMotifCigarP10211MF_04032244) - STRLEN(REPLACE(?templateMotifCigarP10211MF_04032244, CONCAT('^(?:-*[^-]){', STR(((529 - ?templateMotifSequenceMatchBeginPositionP10211245) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1258) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10211MF_04032246, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032246) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10211MF_04032246, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032246) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), '')))), '[^-]', ''))) AS ?step2259) .
BIND(((?step2259 + ?targetMotifMatchRegionMatchBeginPositionMF_04032247) - 1) AS ?thisPositionOn69) .
BIND(?this AS ?pfs1t260) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse67) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn68, (?thisPositionOn69 - ?thisPositionOn68)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04032a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch265 faldo:location ?templateMotifSequenceMatchRegionP10211266 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP10211268 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10211MF_04032261 .
?templateMotifSequenceMatchRegionP10211266 faldo:begin ?templateMotifSequenceMatchBeginP10211267 .
?templateMotifSequenceMatchBeginP10211267 faldo:position ?templateMotifSequenceMatchBeginPositionP10211262 ;
faldo:reference isoform:P10211-1 .
?templateMotifSequenceProfileAlignmentOperationP10211268 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
?targetMotifMatch269 faldo:location ?targetMotifMatchRegionMatch270 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04032272 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10211MF_04032263 .
?targetMotifMatchRegionMatch270 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04032271 .
?targetMotifMatchRegionMatchBeginMF_04032271 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04032264 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04032272 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10211MF_04032261, 1, (STRLEN(?templateMotifCigarP10211MF_04032261) - STRLEN(REPLACE(?templateMotifCigarP10211MF_04032261, CONCAT('^(?:-*[^-]){', STR(((207 - ?templateMotifSequenceMatchBeginPositionP10211262) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1273) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10211MF_04032263, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032263) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1273), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10211MF_04032263, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032263) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1273), '}'), '')))), '[^-]', ''))) AS ?step2274) .
BIND(((?step2274 + ?targetMotifMatchRegionMatchBeginPositionMF_04032264) - 1) AS ?thisPositionOn74) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10211MF_04032261, 1, (STRLEN(?templateMotifCigarP10211MF_04032261) - STRLEN(REPLACE(?templateMotifCigarP10211MF_04032261, CONCAT('^(?:-*[^-]){', STR(((271 - ?templateMotifSequenceMatchBeginPositionP10211262) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1275) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10211MF_04032263, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032263) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10211MF_04032263, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032263) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), '')))), '[^-]', ''))) AS ?step2276) .
BIND(((?step2276 + ?targetMotifMatchRegionMatchBeginPositionMF_04032264) - 1) AS ?thisPositionOn75) .
BIND(?this AS ?pfs1t277) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse73) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn74, (?thisPositionOn75 - ?thisPositionOn74)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04032a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch282 faldo:location ?templateMotifSequenceMatchRegionP10211283 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP10211285 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10211MF_04032278 .
?templateMotifSequenceMatchRegionP10211283 faldo:begin ?templateMotifSequenceMatchBeginP10211284 .
?templateMotifSequenceMatchBeginP10211284 faldo:position ?templateMotifSequenceMatchBeginPositionP10211279 ;
faldo:reference isoform:P10211-1 .
?templateMotifSequenceProfileAlignmentOperationP10211285 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
?targetMotifMatch286 faldo:location ?targetMotifMatchRegionMatch287 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04032289 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10211MF_04032280 .
?targetMotifMatchRegionMatch287 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04032288 .
?targetMotifMatchRegionMatchBeginMF_04032288 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04032281 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04032289 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10211MF_04032278, 1, (STRLEN(?templateMotifCigarP10211MF_04032278) - STRLEN(REPLACE(?templateMotifCigarP10211MF_04032278, CONCAT('^(?:-*[^-]){', STR(((364 - ?templateMotifSequenceMatchBeginPositionP10211279) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1290) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10211MF_04032280, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032280) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1290), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10211MF_04032280, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032280) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1290), '}'), '')))), '[^-]', ''))) AS ?step2291) .
BIND(((?step2291 + ?targetMotifMatchRegionMatchBeginPositionMF_04032281) - 1) AS ?thisPositionOn80) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10211MF_04032278, 1, (STRLEN(?templateMotifCigarP10211MF_04032278) - STRLEN(REPLACE(?templateMotifCigarP10211MF_04032278, CONCAT('^(?:-*[^-]){', STR(((412 - ?templateMotifSequenceMatchBeginPositionP10211279) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1292) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10211MF_04032280, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032280) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10211MF_04032280, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032280) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), '')))), '[^-]', ''))) AS ?step2293) .
BIND(((?step2293 + ?targetMotifMatchRegionMatchBeginPositionMF_04032281) - 1) AS ?thisPositionOn81) .
BIND(?this AS ?pfs1t294) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse79) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn80, (?thisPositionOn81 - ?thisPositionOn80)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04032a77')) AS ?annotation77) .
BIND(?this AS ?pfs76) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch299 faldo:location ?templateMotifSequenceMatchRegionP10211300 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP10211302 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10211MF_04032295 .
?templateMotifSequenceMatchRegionP10211300 faldo:begin ?templateMotifSequenceMatchBeginP10211301 .
?templateMotifSequenceMatchBeginP10211301 faldo:position ?templateMotifSequenceMatchBeginPositionP10211296 ;
faldo:reference isoform:P10211-1 .
?templateMotifSequenceProfileAlignmentOperationP10211302 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
?targetMotifMatch303 faldo:location ?targetMotifMatchRegionMatch304 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04032306 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10211MF_04032297 .
?targetMotifMatchRegionMatch304 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04032305 .
?targetMotifMatchRegionMatchBeginMF_04032305 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04032298 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04032306 edam:has_input signature:MF_04032 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10211MF_04032295, 1, (STRLEN(?templateMotifCigarP10211MF_04032295) - STRLEN(REPLACE(?templateMotifCigarP10211MF_04032295, CONCAT('^(?:-*[^-]){', STR(((596 - ?templateMotifSequenceMatchBeginPositionP10211296) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1307) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10211MF_04032297, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032297) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10211MF_04032297, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032297) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), '')))), '[^-]', ''))) AS ?step2308) .
BIND(((?step2308 + ?targetMotifMatchRegionMatchBeginPositionMF_04032298) - 1) AS ?thisPositionOn86) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10211MF_04032295, 1, (STRLEN(?templateMotifCigarP10211MF_04032295) - STRLEN(REPLACE(?templateMotifCigarP10211MF_04032295, CONCAT('^(?:-*[^-]){', STR(((633 - ?templateMotifSequenceMatchBeginPositionP10211296) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1309) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10211MF_04032297, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032297) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10211MF_04032297, 1, (STRLEN(?targetMotifMatchCigarP10211MF_04032297) - STRLEN(REPLACE(?targetMotifMatchCigarP10211MF_04032297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), '')))), '[^-]', ''))) AS ?step2310) .
BIND(((?step2310 + ?targetMotifMatchRegionMatchBeginPositionMF_04032298) - 1) AS ?thisPositionOn87) .
BIND(?this AS ?pfs1t311) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse85) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn86, (?thisPositionOn87 - ?thisPositionOn86)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04032a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this up:annotation ?samsignal312 ;
up:sequence ?thisSequence .
?samsignal312 up:range ?samsignalr313 ;
rdf:type up:Signal_Peptide_Annotation .
?samsignalr313 faldo:begin ?samsignalb314 ;
faldo:end ?samsignale315 .
?samsignalb314 faldo:position ?samsignalbp316 ;
faldo:reference ?thisSequence .
?samsignale315 faldo:position ?samsignalep317 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam88) .
}
BIND(URI(CONCAT(STR(?this), '#MF_04032a94')) AS ?keyword94) .
}
"xsd:string |
