| http://purl.uniprot.org/unirules/MF_04056#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:917380 up:source unirule:MF_04056 .
_:917381 up:source unirule:MF_04056 .
_:917382 up:fullName 'Histone-like nucleoprotein' ;
up:shortName 'NP' ;
rdf:type up:Structured_Name .
_:917383 up:fullName 'Core protein VII' ;
rdf:type up:Structured_Name .
_:917384 up:source unirule:MF_04056 .
_:917385 up:source unirule:MF_04056 .
_:917386 up:source unirule:MF_04056 .
_:917387 up:source unirule:MF_04056 .
_:917388 up:source unirule:MF_04056 .
_:917389 up:source unirule:MF_04056 .
_:917390 up:source unirule:MF_04056 .
_:917391 up:source unirule:MF_04056 .
_:917392 up:source unirule:MF_04056 .
_:917393 up:source unirule:MF_04056 .
_:917394 up:source unirule:MF_04056 .
_:917395 up:source unirule:MF_04056 .
_:917396 up:source unirule:MF_04056 .
_:917397 up:source unirule:MF_04056 .
_:917398 up:source unirule:MF_04056 .
_:917399 up:source unirule:MF_04056 .
_:917400 up:source unirule:MF_04056 .
_:917401 up:source unirule:MF_04056 .
_:917402 up:source unirule:MF_04056 .
_:917403 up:source unirule:MF_04056 .
_:917404 up:source unirule:MF_04056 .
_:917405 up:source unirule:MF_04056 .
_:917406 up:source unirule:MF_04056 .
_:917407 up:source unirule:MF_04056 .
_:917408 up:source unirule:MF_04056 .
_:917409 up:source unirule:MF_04056 .
_:917410 up:source unirule:MF_04056 .
_:917411 up:source unirule:MF_04056 .
_:917412 up:source unirule:MF_04056 .
_:917413 up:source unirule:MF_04056 .
_:917414 up:source unirule:MF_04056 .
_:917415 up:source unirule:MF_04056 .
_:917416 up:source unirule:MF_04056 .
_:917417 up:source unirule:MF_04056 .
_:917418 up:source unirule:MF_04056 .
_:917419 up:source unirule:MF_04056 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation10 ,
?annotation11 ,
?annotation12 ,
?annotation13 ;
up:classifiedWith GO:0003677 ,
GO:0044196 ,
GO:0046718 ,
GO:0075732 ,
keyword:1048 ,
keyword:1160 ,
keyword:1163 ,
keyword:238 ,
keyword:426 ,
keyword:597 ,
keyword:945 ,
keyword:946 ;
up:component ?namedpart2 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Pre-histone-like nucleoprotein' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Pre-core protein VII' ;
up:shortName 'pVII' ;
rdf:type up:Structured_Name .
?namedpart2 up:alternativeName _:917383 ;
up:recommendedName _:917382 .
?gene3 skos:prefLabel 'L2' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Plays a role in the inhibition of host immune response within the nucleus. Interacts with cellular nucleosomes and immobilizes the host immune danger signal HMGB1 on chromatin. In turn, prevents HMGB1 release out of the cell and thus decreases inflammation. Plays also a role in the wrapping and condensation of the viral DNA. May also promote viral genome import into the nucleus.' .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Interacts with the core-capsid bridging protein; this interaction bridges the virus core to the capsid. Interacts with host NPM1; this interaction might play a role in placing the pre-histone-like nucleoprotein on the viral DNA or regulating viral gene expression. Interacts with host HMGB1; this interaction inhibits host immune response.' .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Located inside the capsid in association with the viral DNA (core). Present in about 1070 copies per virion' .
?annotation8li9 up:cellularComponent .
?annotation10 a up:Induction_Annotation ;
rdfs:comment 'Expressed in the late phase of the viral replicative cycle.' .
?annotation11 a up:PTM_Annotation ;
rdfs:comment 'Cleaved near the N-terminus by the viral protease during virion maturation to form the mature protein.' .
?annotation12 a up:Annotation ;
rdfs:comment 'All late proteins expressed from the major late promoter are produced by alternative splicing and alternative polyadenylation of the same gene giving rise to non-overlapping ORFs. A leader sequence is present in the N-terminus of all these mRNAs and is recognized by the viral shutoff protein to provide expression although conventional translation via ribosome scanning from the cap has been shut off in the host cell.' .
?annotation13 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the adenoviridae histone-like nucleoprotein family.' .
?case14 up:classifiedWith keyword:7 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N-acetylserine; by host' .
?pfsb17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine; by host' .
?pfsb23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine; by host' .
?pfsb29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Pre-histone-like nucleoprotein' .
?pfsb35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
rdf:type up:Propeptide_Annotation .
?pfsb41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Histone-like nucleoprotein' .
?pfsb47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Nuclear localization signal' .
?pfsb53 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
rdf:type up:Initiator_Methionine_Annotation ;
rdfs:comment 'Removed' .
?pfsb59 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage; by viral protease' .
?pfsb65 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfs69 up:annotation ?annotation70 .
?annotation70 faldo:begin ?pfsb71 ;
faldo:end ?pfse72 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphothreonine; by host' .
?pfsb71 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse72 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfs75 up:annotation ?annotation76 .
?annotation76 faldo:begin ?pfsb77 ;
faldo:end ?pfse78 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphothreonine; by host' .
?pfsb77 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse78 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfs81 up:annotation ?annotation82 .
?annotation82 faldo:begin ?pfsb83 ;
faldo:end ?pfse84 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb83 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfse84 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfs87 up:annotation ?annotation88 .
?annotation88 faldo:begin ?pfsb89 ;
faldo:end ?pfse90 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb89 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse90 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
_:917420 a rdf:Statement ;
up:attribution _:917380 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:917421 a rdf:Statement ;
up:attribution _:917381 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:917422 a rdf:Statement ;
up:attribution _:917384 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart2 .
_:917423 a rdf:Statement ;
up:attribution _:917385 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:917424 a rdf:Statement ;
up:attribution _:917386 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:917425 a rdf:Statement ;
up:attribution _:917387 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:917426 a rdf:Statement ;
up:attribution _:917388 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:917427 a rdf:Statement ;
up:attribution _:917389 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:917428 a rdf:Statement ;
up:attribution _:917390 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:917429 a rdf:Statement ;
up:attribution _:917391 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:917430 a rdf:Statement ;
up:attribution _:917392 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:917431 a rdf:Statement ;
up:attribution _:917393 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:917432 a rdf:Statement ;
up:attribution _:917394 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:917433 a rdf:Statement ;
up:attribution _:917395 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1048 .
_:917434 a rdf:Statement ;
up:attribution _:917396 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:945 .
_:917435 a rdf:Statement ;
up:attribution _:917397 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:426 .
_:917436 a rdf:Statement ;
up:attribution _:917398 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:917437 a rdf:Statement ;
up:attribution _:917399 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1163 .
_:917438 a rdf:Statement ;
up:attribution _:917400 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:917439 a rdf:Statement ;
up:attribution _:917401 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1160 .
_:917440 a rdf:Statement ;
up:attribution _:917402 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044196 .
_:917441 a rdf:Statement ;
up:attribution _:917403 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:917442 a rdf:Statement ;
up:attribution _:917404 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046718 .
_:917443 a rdf:Statement ;
up:attribution _:917405 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0075732 .
_:917444 a rdf:Statement ;
up:attribution _:917406 ;
rdf:subject ?case14 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
_:917445 a rdf:Statement ;
up:source unirule:MF_04056 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:917446 a rdf:Statement ;
up:attribution _:917407 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:917447 a rdf:Statement ;
up:source unirule:MF_04056 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:917448 a rdf:Statement ;
up:attribution _:917408 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:917449 a rdf:Statement ;
up:source unirule:MF_04056 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:917450 a rdf:Statement ;
up:attribution _:917409 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:917451 a rdf:Statement ;
up:source unirule:MF_04056 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:917452 a rdf:Statement ;
up:attribution _:917410 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:917453 a rdf:Statement ;
up:source unirule:MF_04056 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:917454 a rdf:Statement ;
up:attribution _:917411 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:917455 a rdf:Statement ;
up:source unirule:MF_04056 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:917456 a rdf:Statement ;
up:attribution _:917412 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:917457 a rdf:Statement ;
up:source unirule:MF_04056 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:917458 a rdf:Statement ;
up:attribution _:917413 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:917459 a rdf:Statement ;
up:source unirule:MF_04056 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:917460 a rdf:Statement ;
up:attribution _:917414 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:917461 a rdf:Statement ;
up:source unirule:MF_04056 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:917462 a rdf:Statement ;
up:attribution _:917415 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:917463 a rdf:Statement ;
up:source unirule:MF_04056 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:917464 a rdf:Statement ;
up:attribution _:917416 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:917465 a rdf:Statement ;
up:source unirule:MF_04056 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:917466 a rdf:Statement ;
up:attribution _:917417 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:917467 a rdf:Statement ;
up:source unirule:MF_04056 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:917468 a rdf:Statement ;
up:attribution _:917418 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:917469 a rdf:Statement ;
up:source unirule:MF_04056 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:917470 a rdf:Statement ;
up:attribution _:917419 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04056
#Rule MF_04056 Created by:? on:2017-03-14 Modified by:Catherine Rivoire on:2024-03-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04056 .
?thisOrganism rdfs:subClassOf+ taxon:10508 .
BIND(URI(CONCAT(STR(?this), '#MF_04056a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04056a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04056a2')) AS ?namedpart2) .
BIND(URI(CONCAT(STR(?this), '#MF_04056a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04056a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04056a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_04056a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_04056a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_04056a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_04056a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_04056a13')) AS ?annotation13) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch97 faldo:location ?templateMotifSequenceMatchRegionP6895098 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP68950100 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP68950MF_0405693 .
?templateMotifSequenceMatchRegionP6895098 faldo:begin ?templateMotifSequenceMatchBeginP6895099 .
?templateMotifSequenceMatchBeginP6895099 faldo:position ?templateMotifSequenceMatchBeginPositionP6895094 ;
faldo:reference isoform:P68950-1 .
?templateMotifSequenceProfileAlignmentOperationP68950100 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
?targetMotifMatch101 faldo:location ?targetMotifMatchRegionMatch102 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04056104 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP68950MF_0405695 .
?targetMotifMatchRegionMatch102 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04056103 .
?targetMotifMatchRegionMatchBeginMF_04056103 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0405696 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04056104 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagAcet) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68950MF_0405693, 1, (STRLEN(?templateMotifCigarP68950MF_0405693) - STRLEN(REPLACE(?templateMotifCigarP68950MF_0405693, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP6895094) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68950MF_0405695, 1, (STRLEN(?targetMotifMatchCigarP68950MF_0405695) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_0405695, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68950MF_0405695, 1, (STRLEN(?targetMotifMatchCigarP68950MF_0405695) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_0405695, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0405696) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04056a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch112 faldo:location ?templateMotifSequenceMatchRegionP68950113 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP68950115 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP68950MF_04056108 .
?templateMotifSequenceMatchRegionP68950113 faldo:begin ?templateMotifSequenceMatchBeginP68950114 .
?templateMotifSequenceMatchBeginP68950114 faldo:position ?templateMotifSequenceMatchBeginPositionP68950109 ;
faldo:reference isoform:P68950-1 .
?templateMotifSequenceProfileAlignmentOperationP68950115 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
?targetMotifMatch116 faldo:location ?targetMotifMatchRegionMatch117 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04056119 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP68950MF_04056110 .
?targetMotifMatchRegionMatch117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04056118 .
?targetMotifMatchRegionMatchBeginMF_04056118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04056111 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04056119 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagAcet) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68950MF_04056108, 1, (STRLEN(?templateMotifCigarP68950MF_04056108) - STRLEN(REPLACE(?templateMotifCigarP68950MF_04056108, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionP68950109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68950MF_04056110, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056110) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68950MF_04056110, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056110) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) .
BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_04056111) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t122) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_04056a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch127 faldo:location ?templateMotifSequenceMatchRegionP68950128 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP68950130 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP68950MF_04056123 .
?templateMotifSequenceMatchRegionP68950128 faldo:begin ?templateMotifSequenceMatchBeginP68950129 .
?templateMotifSequenceMatchBeginP68950129 faldo:position ?templateMotifSequenceMatchBeginPositionP68950124 ;
faldo:reference isoform:P68950-1 .
?templateMotifSequenceProfileAlignmentOperationP68950130 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
?targetMotifMatch131 faldo:location ?targetMotifMatchRegionMatch132 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04056134 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP68950MF_04056125 .
?targetMotifMatchRegionMatch132 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04056133 .
?targetMotifMatchRegionMatchBeginMF_04056133 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04056126 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04056134 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagAcet) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68950MF_04056123, 1, (STRLEN(?templateMotifCigarP68950MF_04056123) - STRLEN(REPLACE(?templateMotifCigarP68950MF_04056123, CONCAT('^(?:-*[^-]){', STR(((48 - ?templateMotifSequenceMatchBeginPositionP68950124) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68950MF_04056125, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056125) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68950MF_04056125, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056125) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056125, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) .
BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_04056126) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_04056a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch142 faldo:location ?templateMotifSequenceMatchRegionP68950143 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP68950145 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP68950MF_04056138 .
?templateMotifSequenceMatchRegionP68950143 faldo:begin ?templateMotifSequenceMatchBeginP68950144 .
?templateMotifSequenceMatchBeginP68950144 faldo:position ?templateMotifSequenceMatchBeginPositionP68950139 ;
faldo:reference isoform:P68950-1 .
?templateMotifSequenceProfileAlignmentOperationP68950145 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
?targetMotifMatch146 faldo:location ?targetMotifMatchRegionMatch147 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04056149 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP68950MF_04056140 .
?targetMotifMatchRegionMatch147 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04056148 .
?targetMotifMatchRegionMatchBeginMF_04056148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04056141 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04056149 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68950MF_04056138, 1, (STRLEN(?templateMotifCigarP68950MF_04056138) - STRLEN(REPLACE(?templateMotifCigarP68950MF_04056138, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP68950139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68950MF_04056140, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056140) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68950MF_04056140, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056140) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_04056141) - 1) AS ?thisPositionOn37) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn38) .
BIND(?this AS ?pfs2t152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse36) .
FILTER ((BOUND(?thisPositionOn37) && BOUND(?thisPositionOn38))) .
BIND(URI(CONCAT(STR(?this), '#MF_04056a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionP68950158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP68950160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP68950MF_04056153 .
?templateMotifSequenceMatchRegionP68950158 faldo:begin ?templateMotifSequenceMatchBeginP68950159 .
?templateMotifSequenceMatchBeginP68950159 faldo:position ?templateMotifSequenceMatchBeginPositionP68950154 ;
faldo:reference isoform:P68950-1 .
?templateMotifSequenceProfileAlignmentOperationP68950160 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04056164 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP68950MF_04056155 .
?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04056163 .
?targetMotifMatchRegionMatchBeginMF_04056163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04056156 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04056164 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68950MF_04056153, 1, (STRLEN(?templateMotifCigarP68950MF_04056153) - STRLEN(REPLACE(?templateMotifCigarP68950MF_04056153, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP68950154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68950MF_04056155, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056155) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68950MF_04056155, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056155) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_04056156) - 1) AS ?thisPositionOn43) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68950MF_04056153, 1, (STRLEN(?templateMotifCigarP68950MF_04056153) - STRLEN(REPLACE(?templateMotifCigarP68950MF_04056153, CONCAT('^(?:-*[^-]){', STR(((24 - ?templateMotifSequenceMatchBeginPositionP68950154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68950MF_04056155, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056155) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68950MF_04056155, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056155) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) .
BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_04056156) - 1) AS ?thisPositionOn44) .
BIND(?this AS ?pfs2t169) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse42) .
FILTER ((BOUND(?thisPositionOn43) && BOUND(?thisPositionOn44))) .
BIND(URI(CONCAT(STR(?this), '#MF_04056a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch174 faldo:location ?templateMotifSequenceMatchRegionP68950175 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP68950177 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP68950MF_04056170 .
?templateMotifSequenceMatchRegionP68950175 faldo:begin ?templateMotifSequenceMatchBeginP68950176 .
?templateMotifSequenceMatchBeginP68950176 faldo:position ?templateMotifSequenceMatchBeginPositionP68950171 ;
faldo:reference isoform:P68950-1 .
?templateMotifSequenceProfileAlignmentOperationP68950177 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
?targetMotifMatch178 faldo:location ?targetMotifMatchRegionMatch179 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04056181 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP68950MF_04056172 .
?targetMotifMatchRegionMatch179 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04056180 .
?targetMotifMatchRegionMatchBeginMF_04056180 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04056173 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04056181 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68950MF_04056170, 1, (STRLEN(?templateMotifCigarP68950MF_04056170) - STRLEN(REPLACE(?templateMotifCigarP68950MF_04056170, CONCAT('^(?:-*[^-]){', STR(((25 - ?templateMotifSequenceMatchBeginPositionP68950171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68950MF_04056172, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056172) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68950MF_04056172, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056172) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) .
BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_04056173) - 1) AS ?thisPositionOn49) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn50) .
BIND(?this AS ?pfs2t184) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse48) .
FILTER ((BOUND(?thisPositionOn49) && BOUND(?thisPositionOn50))) .
BIND(URI(CONCAT(STR(?this), '#MF_04056a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch189 faldo:location ?templateMotifSequenceMatchRegionP68950190 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP68950192 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP68950MF_04056185 .
?templateMotifSequenceMatchRegionP68950190 faldo:begin ?templateMotifSequenceMatchBeginP68950191 .
?templateMotifSequenceMatchBeginP68950191 faldo:position ?templateMotifSequenceMatchBeginPositionP68950186 ;
faldo:reference isoform:P68950-1 .
?templateMotifSequenceProfileAlignmentOperationP68950192 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
?targetMotifMatch193 faldo:location ?targetMotifMatchRegionMatch194 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04056196 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP68950MF_04056187 .
?targetMotifMatchRegionMatch194 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04056195 .
?targetMotifMatchRegionMatchBeginMF_04056195 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04056188 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04056196 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68950MF_04056185, 1, (STRLEN(?templateMotifCigarP68950MF_04056185) - STRLEN(REPLACE(?templateMotifCigarP68950MF_04056185, CONCAT('^(?:-*[^-]){', STR(((188 - ?templateMotifSequenceMatchBeginPositionP68950186) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68950MF_04056187, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056187) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68950MF_04056187, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056187) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), '')))), '[^-]', ''))) AS ?step2198) .
BIND(((?step2198 + ?targetMotifMatchRegionMatchBeginPositionMF_04056188) - 1) AS ?thisPositionOn55) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn56) .
BIND(?this AS ?pfs2t199) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse54) .
FILTER ((BOUND(?thisPositionOn55) && BOUND(?thisPositionOn56))) .
BIND(URI(CONCAT(STR(?this), '#MF_04056a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch204 faldo:location ?templateMotifSequenceMatchRegionP68950205 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP68950207 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP68950MF_04056200 .
?templateMotifSequenceMatchRegionP68950205 faldo:begin ?templateMotifSequenceMatchBeginP68950206 .
?templateMotifSequenceMatchBeginP68950206 faldo:position ?templateMotifSequenceMatchBeginPositionP68950201 ;
faldo:reference isoform:P68950-1 .
?templateMotifSequenceProfileAlignmentOperationP68950207 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
?targetMotifMatch208 faldo:location ?targetMotifMatchRegionMatch209 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04056211 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP68950MF_04056202 .
?targetMotifMatchRegionMatch209 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04056210 .
?targetMotifMatchRegionMatchBeginMF_04056210 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04056203 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04056211 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68950MF_04056200, 1, (STRLEN(?templateMotifCigarP68950MF_04056200) - STRLEN(REPLACE(?templateMotifCigarP68950MF_04056200, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP68950201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1212) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68950MF_04056202, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056202) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68950MF_04056202, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056202) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), '')))), '[^-]', ''))) AS ?step2213) .
BIND(((?step2213 + ?targetMotifMatchRegionMatchBeginPositionMF_04056203) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs2t214) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_04056a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch219 faldo:location ?templateMotifSequenceMatchRegionP68950220 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP68950222 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP68950MF_04056215 .
?templateMotifSequenceMatchRegionP68950220 faldo:begin ?templateMotifSequenceMatchBeginP68950221 .
?templateMotifSequenceMatchBeginP68950221 faldo:position ?templateMotifSequenceMatchBeginPositionP68950216 ;
faldo:reference isoform:P68950-1 .
?templateMotifSequenceProfileAlignmentOperationP68950222 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
?targetMotifMatch223 faldo:location ?targetMotifMatchRegionMatch224 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04056226 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP68950MF_04056217 .
?targetMotifMatchRegionMatch224 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04056225 .
?targetMotifMatchRegionMatchBeginMF_04056225 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04056218 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04056226 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68950MF_04056215, 1, (STRLEN(?templateMotifCigarP68950MF_04056215) - STRLEN(REPLACE(?templateMotifCigarP68950MF_04056215, CONCAT('^(?:-*[^-]){', STR(((24 - ?templateMotifSequenceMatchBeginPositionP68950216) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1227) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68950MF_04056217, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056217) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68950MF_04056217, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056217) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), '')))), '[^-]', ''))) AS ?step2228) .
BIND(((?step2228 + ?targetMotifMatchRegionMatchBeginPositionMF_04056218) - 1) AS ?thisPositionOn67) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68950MF_04056215, 1, (STRLEN(?templateMotifCigarP68950MF_04056215) - STRLEN(REPLACE(?templateMotifCigarP68950MF_04056215, CONCAT('^(?:-*[^-]){', STR(((25 - ?templateMotifSequenceMatchBeginPositionP68950216) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1229) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68950MF_04056217, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056217) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68950MF_04056217, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056217) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), '')))), '[^-]', ''))) AS ?step2230) .
BIND(((?step2230 + ?targetMotifMatchRegionMatchBeginPositionMF_04056218) - 1) AS ?thisPositionOn68) .
BIND(?this AS ?pfs2t231) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse66) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, (?thisPositionOn68 - ?thisPositionOn67)) = 'GA')) .
BIND(URI(CONCAT(STR(?this), '#MF_04056a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch236 faldo:location ?templateMotifSequenceMatchRegionP68950237 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP68950239 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP68950MF_04056232 .
?templateMotifSequenceMatchRegionP68950237 faldo:begin ?templateMotifSequenceMatchBeginP68950238 .
?templateMotifSequenceMatchBeginP68950238 faldo:position ?templateMotifSequenceMatchBeginPositionP68950233 ;
faldo:reference isoform:P68950-1 .
?templateMotifSequenceProfileAlignmentOperationP68950239 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
?targetMotifMatch240 faldo:location ?targetMotifMatchRegionMatch241 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04056243 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP68950MF_04056234 .
?targetMotifMatchRegionMatch241 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04056242 .
?targetMotifMatchRegionMatchBeginMF_04056242 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04056235 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04056243 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68950MF_04056232, 1, (STRLEN(?templateMotifCigarP68950MF_04056232) - STRLEN(REPLACE(?templateMotifCigarP68950MF_04056232, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionP68950233) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1244) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68950MF_04056234, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056234) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1244), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68950MF_04056234, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056234) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1244), '}'), '')))), '[^-]', ''))) AS ?step2245) .
BIND(((?step2245 + ?targetMotifMatchRegionMatchBeginPositionMF_04056235) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs2t246) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse72) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_04056a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch251 faldo:location ?templateMotifSequenceMatchRegionP68950252 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP68950254 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP68950MF_04056247 .
?templateMotifSequenceMatchRegionP68950252 faldo:begin ?templateMotifSequenceMatchBeginP68950253 .
?templateMotifSequenceMatchBeginP68950253 faldo:position ?templateMotifSequenceMatchBeginPositionP68950248 ;
faldo:reference isoform:P68950-1 .
?templateMotifSequenceProfileAlignmentOperationP68950254 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
?targetMotifMatch255 faldo:location ?targetMotifMatchRegionMatch256 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04056258 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP68950MF_04056249 .
?targetMotifMatchRegionMatch256 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04056257 .
?targetMotifMatchRegionMatchBeginMF_04056257 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04056250 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04056258 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68950MF_04056247, 1, (STRLEN(?templateMotifCigarP68950MF_04056247) - STRLEN(REPLACE(?templateMotifCigarP68950MF_04056247, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionP68950248) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1259) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68950MF_04056249, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056249) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056249, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1259), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68950MF_04056249, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056249) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056249, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1259), '}'), '')))), '[^-]', ''))) AS ?step2260) .
BIND(((?step2260 + ?targetMotifMatchRegionMatchBeginPositionMF_04056250) - 1) AS ?thisPositionOn79) .
BIND(?thisPositionOn79 AS ?thisPositionOn80) .
BIND(?this AS ?pfs2t261) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse78) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_04056a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch266 faldo:location ?templateMotifSequenceMatchRegionP68950267 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP68950269 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP68950MF_04056262 .
?templateMotifSequenceMatchRegionP68950267 faldo:begin ?templateMotifSequenceMatchBeginP68950268 .
?templateMotifSequenceMatchBeginP68950268 faldo:position ?templateMotifSequenceMatchBeginPositionP68950263 ;
faldo:reference isoform:P68950-1 .
?templateMotifSequenceProfileAlignmentOperationP68950269 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
?targetMotifMatch270 faldo:location ?targetMotifMatchRegionMatch271 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04056273 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP68950MF_04056264 .
?targetMotifMatchRegionMatch271 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04056272 .
?targetMotifMatchRegionMatchBeginMF_04056272 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04056265 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04056273 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68950MF_04056262, 1, (STRLEN(?templateMotifCigarP68950MF_04056262) - STRLEN(REPLACE(?templateMotifCigarP68950MF_04056262, CONCAT('^(?:-*[^-]){', STR(((183 - ?templateMotifSequenceMatchBeginPositionP68950263) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1274) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68950MF_04056264, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056264) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1274), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68950MF_04056264, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056264) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1274), '}'), '')))), '[^-]', ''))) AS ?step2275) .
BIND(((?step2275 + ?targetMotifMatchRegionMatchBeginPositionMF_04056265) - 1) AS ?thisPositionOn85) .
BIND(?thisPositionOn85 AS ?thisPositionOn86) .
BIND(?this AS ?pfs2t276) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse84) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn85, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04056a82')) AS ?annotation82) .
BIND(?this AS ?pfs81) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch281 faldo:location ?templateMotifSequenceMatchRegionP68950282 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP68950284 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP68950MF_04056277 .
?templateMotifSequenceMatchRegionP68950282 faldo:begin ?templateMotifSequenceMatchBeginP68950283 .
?templateMotifSequenceMatchBeginP68950283 faldo:position ?templateMotifSequenceMatchBeginPositionP68950278 ;
faldo:reference isoform:P68950-1 .
?templateMotifSequenceProfileAlignmentOperationP68950284 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
?targetMotifMatch285 faldo:location ?targetMotifMatchRegionMatch286 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04056288 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP68950MF_04056279 .
?targetMotifMatchRegionMatch286 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04056287 .
?targetMotifMatchRegionMatchBeginMF_04056287 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04056280 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04056288 edam:has_input signature:MF_04056 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP68950MF_04056277, 1, (STRLEN(?templateMotifCigarP68950MF_04056277) - STRLEN(REPLACE(?templateMotifCigarP68950MF_04056277, CONCAT('^(?:-*[^-]){', STR(((185 - ?templateMotifSequenceMatchBeginPositionP68950278) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1289) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP68950MF_04056279, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056279) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056279, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1289), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP68950MF_04056279, 1, (STRLEN(?targetMotifMatchCigarP68950MF_04056279) - STRLEN(REPLACE(?targetMotifMatchCigarP68950MF_04056279, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1289), '}'), '')))), '[^-]', ''))) AS ?step2290) .
BIND(((?step2290 + ?targetMotifMatchRegionMatchBeginPositionMF_04056280) - 1) AS ?thisPositionOn91) .
BIND(?thisPositionOn91 AS ?thisPositionOn92) .
BIND(?this AS ?pfs2t291) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse90) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04056a88')) AS ?annotation88) .
BIND(?this AS ?pfs87) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag292) .
}
BIND(IF(BOUND(?tagAcet), ?caseWithTag292, ?UNBOUND_VARIABLE) AS ?case14) .
}
"xsd:string |
