| http://purl.uniprot.org/unirules/MF_04200#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:983109 up:source unirule:MF_04200 .
_:983110 up:source unirule:MF_04200 .
_:983111 up:source unirule:MF_04200 .
_:983112 up:source unirule:MF_04200 .
_:983113 up:source unirule:MF_04200 .
_:983114 up:source unirule:MF_04200 .
_:983115 up:source unirule:MF_04200 .
_:983116 up:source unirule:MF_04200 .
_:983117 up:source unirule:MF_04200 .
_:983118 up:source unirule:MF_04200 .
_:983119 up:source unirule:MF_04200 .
_:983120 up:source unirule:MF_04200 .
_:983121 up:source unirule:MF_04200 .
_:983122 up:source unirule:MF_04200 .
_:983123 up:source unirule:MF_04200 .
_:983124 up:source unirule:MF_04200 .
_:983125 up:source unirule:MF_04200 .
_:983126 up:source unirule:MF_04200 .
_:983127 up:source unirule:MF_04200 .
_:983128 up:source unirule:MF_04200 .
_:983129 up:source unirule:MF_04200 .
_:983130 up:source unirule:MF_04200 .
_:983131 up:source unirule:MF_04200 .
_:983132 up:source unirule:MF_04200 .
_:983133 up:source unirule:MF_04200 .
_:983134 up:source unirule:MF_04200 .
_:983135 up:source unirule:MF_04200 .
_:983136 up:source unirule:MF_04200 .
_:983137 up:source unirule:MF_04200 .
_:983138 up:source unirule:MF_04200 .
_:983139 up:source unirule:MF_04200 .
_:983140 up:source unirule:MF_04200 .
_:983141 up:source unirule:MF_04200 .
_:983142 up:source unirule:MF_04200 .
_:983143 up:source unirule:MF_04200 .
_:983144 up:source unirule:MF_04200 .
_:983145 up:source unirule:MF_04200 .
_:983146 up:source unirule:MF_04200 .
_:983147 up:source unirule:MF_04200 .
_:983148 up:source unirule:MF_04200 .
_:983149 up:source unirule:MF_04200 .
_:983150 up:source unirule:MF_04200 .
_:983151 up:source unirule:MF_04200 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation6 ,
?annotation9 ,
?annotation10 ,
?annotation11 ;
up:classifiedWith GO:0016020 ,
GO:0019031 ,
GO:0019064 ,
GO:0039654 ,
GO:0044173 ,
GO:0046813 ,
GO:0055036 ,
GO:0075509 ,
keyword:1043 ,
keyword:1133 ,
keyword:1160 ,
keyword:1161 ,
keyword:175 ,
keyword:261 ,
keyword:325 ,
keyword:472 ,
keyword:732 ,
keyword:812 ,
keyword:843 ,
keyword:945 ,
keyword:946 ;
up:precursor "true"^^xsd:boolean ;
up:recommendedName ?name0 .
?name0 up:fullName 'Spike glycoprotein' ;
up:shortName 'S glycoprotein' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'E2' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Peplomer protein' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'S' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'S1 region attaches the virion to the cell membrane by interacting with the host receptor, initiating the infection. Binding to the receptor probably induces conformational changes in the S glycoprotein unmasking the fusion peptide of S2 region and activating membranes fusion. S2 region belongs to the class I viral fusion protein. Under the current model, the protein has at least 3 conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and target cell membrane fusion, the coiled coil regions (heptad repeats) regions assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes.' .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Homotrimer. During virus morphogenesis, found in a complex with M and HE proteins. Interacts with host receptor.' .
?annotation6 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Accumulates in the endoplasmic reticulum-Golgi intermediate compartment, where it participates in virus particle assembly' .
?annotation6li7 up:cellularComponent .
?annotation6li8 up:cellularComponent .
?annotation9 a up:Domain_Annotation ;
rdfs:comment 'The KxHxx motif seems to function as an ER retrieval signal.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the alphacoronaviruses spike protein family.' .
?annotation11 a up:Caution_Annotation ;
rdfs:comment 'In contrast to serogroups 2 and 3, S glycoprotein from serogroup 1 is not cleaved into S1 and S2.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Signal_Peptide_Annotation .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Spike glycoprotein' .
?pfsb20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Virion surface' .
?pfsb26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Intravirion' .
?pfsb38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'S1' .
?pfsb44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'S2' .
?pfsb50 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Fusion peptide' .
?pfsb56 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
rdf:type up:Coiled_Coil_Annotation .
?pfsb62 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
rdf:type up:Coiled_Coil_Annotation .
?pfsb68 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'KxHxx' .
?pfsb74 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
_:983152 a rdf:Statement ;
up:attribution _:983109 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:983153 a rdf:Statement ;
up:attribution _:983110 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:983154 a rdf:Statement ;
up:attribution _:983111 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:983155 a rdf:Statement ;
up:attribution _:983112 ;
rdf:subject ?this ;
rdf:predicate up:precursor ;
rdf:object "true"^^xsd:boolean .
_:983156 a rdf:Statement ;
up:attribution _:983113 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:983157 a rdf:Statement ;
up:attribution _:983114 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:983158 a rdf:Statement ;
up:attribution _:983115 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:983159 a rdf:Statement ;
up:attribution _:983116 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:983160 a rdf:Statement ;
up:attribution _:983117 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:983161 a rdf:Statement ;
up:attribution _:983118 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:983162 a rdf:Statement ;
up:attribution _:983119 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:983163 a rdf:Statement ;
up:attribution _:983120 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:175 .
_:983164 a rdf:Statement ;
up:attribution _:983121 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:325 .
_:983165 a rdf:Statement ;
up:attribution _:983122 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1043 .
_:983166 a rdf:Statement ;
up:attribution _:983123 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:945 .
_:983167 a rdf:Statement ;
up:attribution _:983124 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:983168 a rdf:Statement ;
up:attribution _:983125 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
_:983169 a rdf:Statement ;
up:attribution _:983126 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:983170 a rdf:Statement ;
up:attribution _:983127 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:983171 a rdf:Statement ;
up:attribution _:983128 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1161 .
_:983172 a rdf:Statement ;
up:attribution _:983129 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:261 .
_:983173 a rdf:Statement ;
up:attribution _:983130 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:983174 a rdf:Statement ;
up:attribution _:983131 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:843 .
_:983175 a rdf:Statement ;
up:attribution _:983132 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1160 .
_:983176 a rdf:Statement ;
up:attribution _:983133 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044173 .
_:983177 a rdf:Statement ;
up:attribution _:983134 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016020 .
_:983178 a rdf:Statement ;
up:attribution _:983135 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019031 .
_:983179 a rdf:Statement ;
up:attribution _:983136 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0055036 .
_:983180 a rdf:Statement ;
up:attribution _:983137 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0075509 .
_:983181 a rdf:Statement ;
up:attribution _:983138 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039654 .
_:983182 a rdf:Statement ;
up:attribution _:983139 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019064 .
_:983183 a rdf:Statement ;
up:attribution _:983140 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046813 .
_:983184 a rdf:Statement ;
up:source unirule:MF_04200 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:983185 a rdf:Statement ;
up:attribution _:983141 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:983186 a rdf:Statement ;
up:source unirule:MF_04200 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:983187 a rdf:Statement ;
up:attribution _:983142 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:983188 a rdf:Statement ;
up:source unirule:MF_04200 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:983189 a rdf:Statement ;
up:attribution _:983143 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:983190 a rdf:Statement ;
up:source unirule:MF_04200 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:983191 a rdf:Statement ;
up:attribution _:983144 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:983192 a rdf:Statement ;
up:source unirule:MF_04200 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:983193 a rdf:Statement ;
up:attribution _:983145 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:983194 a rdf:Statement ;
up:source unirule:MF_04200 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:983195 a rdf:Statement ;
up:attribution _:983146 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:983196 a rdf:Statement ;
up:source unirule:MF_04200 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:983197 a rdf:Statement ;
up:attribution _:983147 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:983198 a rdf:Statement ;
up:source unirule:MF_04200 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:983199 a rdf:Statement ;
up:attribution _:983148 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:983200 a rdf:Statement ;
up:source unirule:MF_04200 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:983201 a rdf:Statement ;
up:attribution _:983149 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:983202 a rdf:Statement ;
up:source unirule:MF_04200 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:983203 a rdf:Statement ;
up:attribution _:983150 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:983204 a rdf:Statement ;
up:source unirule:MF_04200 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:983205 a rdf:Statement ;
up:attribution _:983151 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04200
#Rule MF_04200 Created by:? on:2018-03-22 Modified by:Edouard de Castro on:2022-09-29
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04200 .
?thisOrganism rdfs:subClassOf+ taxon:693996 .
BIND(URI(CONCAT(STR(?this), '#MF_04200a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04200a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04200a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_04200a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04200a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04200a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_04200a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_04200a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_04200a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch82 faldo:location ?templateMotifSequenceMatchRegionP1542383 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1542385 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP15423MF_0420078 .
?templateMotifSequenceMatchRegionP1542383 faldo:begin ?templateMotifSequenceMatchBeginP1542384 .
?templateMotifSequenceMatchBeginP1542384 faldo:position ?templateMotifSequenceMatchBeginPositionP1542379 ;
faldo:reference isoform:P15423-1 .
?templateMotifSequenceProfileAlignmentOperationP1542385 edam:has_input signature:MF_04200 ;
rdf:type edam:operation_0300 .
?targetMotifMatch86 faldo:location ?targetMotifMatchRegionMatch87 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0420089 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP15423MF_0420080 .
?targetMotifMatchRegionMatch87 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0420088 .
?targetMotifMatchRegionMatchBeginMF_0420088 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0420081 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0420089 edam:has_input signature:MF_04200 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15423MF_0420078, 1, (STRLEN(?templateMotifCigarP15423MF_0420078) - STRLEN(REPLACE(?templateMotifCigarP15423MF_0420078, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionP1542379) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15423MF_0420080, 1, (STRLEN(?targetMotifMatchCigarP15423MF_0420080) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_0420080, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15423MF_0420080, 1, (STRLEN(?targetMotifMatchCigarP15423MF_0420080) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_0420080, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) .
BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0420081) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((BOUND(?thisPositionOn16) && BOUND(?thisPositionOn17))) .
BIND(URI(CONCAT(STR(?this), '#MF_04200a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch97 faldo:location ?templateMotifSequenceMatchRegionP1542398 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP15423100 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP15423MF_0420093 .
?templateMotifSequenceMatchRegionP1542398 faldo:begin ?templateMotifSequenceMatchBeginP1542399 .
?templateMotifSequenceMatchBeginP1542399 faldo:position ?templateMotifSequenceMatchBeginPositionP1542394 ;
faldo:reference isoform:P15423-1 .
?templateMotifSequenceProfileAlignmentOperationP15423100 edam:has_input signature:MF_04200 ;
rdf:type edam:operation_0300 .
?targetMotifMatch101 faldo:location ?targetMotifMatchRegionMatch102 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04200104 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP15423MF_0420095 .
?targetMotifMatchRegionMatch102 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04200103 .
?targetMotifMatchRegionMatchBeginMF_04200103 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0420096 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04200104 edam:has_input signature:MF_04200 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15423MF_0420093, 1, (STRLEN(?templateMotifCigarP15423MF_0420093) - STRLEN(REPLACE(?templateMotifCigarP15423MF_0420093, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionP1542394) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15423MF_0420095, 1, (STRLEN(?targetMotifMatchCigarP15423MF_0420095) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_0420095, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15423MF_0420095, 1, (STRLEN(?targetMotifMatchCigarP15423MF_0420095) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_0420095, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0420096) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15423MF_0420093, 1, (STRLEN(?templateMotifCigarP15423MF_0420093) - STRLEN(REPLACE(?templateMotifCigarP15423MF_0420093, CONCAT('^(?:-*[^-]){', STR(((1173 - ?templateMotifSequenceMatchBeginPositionP1542394) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1107) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15423MF_0420095, 1, (STRLEN(?targetMotifMatchCigarP15423MF_0420095) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_0420095, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15423MF_0420095, 1, (STRLEN(?targetMotifMatchCigarP15423MF_0420095) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_0420095, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1107), '}'), '')))), '[^-]', ''))) AS ?step2108) .
BIND(((?step2108 + ?targetMotifMatchRegionMatchBeginPositionMF_0420096) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) .
FILTER ((BOUND(?thisPositionOn22) && BOUND(?thisPositionOn23))) .
BIND(URI(CONCAT(STR(?this), '#MF_04200a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch114 faldo:location ?templateMotifSequenceMatchRegionP15423115 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP15423117 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP15423MF_04200110 .
?templateMotifSequenceMatchRegionP15423115 faldo:begin ?templateMotifSequenceMatchBeginP15423116 .
?templateMotifSequenceMatchBeginP15423116 faldo:position ?templateMotifSequenceMatchBeginPositionP15423111 ;
faldo:reference isoform:P15423-1 .
?templateMotifSequenceProfileAlignmentOperationP15423117 edam:has_input signature:MF_04200 ;
rdf:type edam:operation_0300 .
?targetMotifMatch118 faldo:location ?targetMotifMatchRegionMatch119 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04200121 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP15423MF_04200112 .
?targetMotifMatchRegionMatch119 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04200120 .
?targetMotifMatchRegionMatchBeginMF_04200120 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04200113 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04200121 edam:has_input signature:MF_04200 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15423MF_04200110, 1, (STRLEN(?templateMotifCigarP15423MF_04200110) - STRLEN(REPLACE(?templateMotifCigarP15423MF_04200110, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionP15423111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15423MF_04200112, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200112) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15423MF_04200112, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200112) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) .
BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_04200113) - 1) AS ?thisPositionOn28) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15423MF_04200110, 1, (STRLEN(?templateMotifCigarP15423MF_04200110) - STRLEN(REPLACE(?templateMotifCigarP15423MF_04200110, CONCAT('^(?:-*[^-]){', STR(((1115 - ?templateMotifSequenceMatchBeginPositionP15423111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15423MF_04200112, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200112) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15423MF_04200112, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200112) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_04200113) - 1) AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) .
FILTER ((BOUND(?thisPositionOn28) && BOUND(?thisPositionOn29))) .
BIND(URI(CONCAT(STR(?this), '#MF_04200a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionP15423132 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP15423134 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP15423MF_04200127 .
?templateMotifSequenceMatchRegionP15423132 faldo:begin ?templateMotifSequenceMatchBeginP15423133 .
?templateMotifSequenceMatchBeginP15423133 faldo:position ?templateMotifSequenceMatchBeginPositionP15423128 ;
faldo:reference isoform:P15423-1 .
?templateMotifSequenceProfileAlignmentOperationP15423134 edam:has_input signature:MF_04200 ;
rdf:type edam:operation_0300 .
?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04200138 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP15423MF_04200129 .
?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04200137 .
?targetMotifMatchRegionMatchBeginMF_04200137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04200130 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04200138 edam:has_input signature:MF_04200 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15423MF_04200127, 1, (STRLEN(?templateMotifCigarP15423MF_04200127) - STRLEN(REPLACE(?templateMotifCigarP15423MF_04200127, CONCAT('^(?:-*[^-]){', STR(((1116 - ?templateMotifSequenceMatchBeginPositionP15423128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15423MF_04200129, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200129) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15423MF_04200129, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200129) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) .
BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_04200130) - 1) AS ?thisPositionOn34) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15423MF_04200127, 1, (STRLEN(?templateMotifCigarP15423MF_04200127) - STRLEN(REPLACE(?templateMotifCigarP15423MF_04200127, CONCAT('^(?:-*[^-]){', STR(((1135 - ?templateMotifSequenceMatchBeginPositionP15423128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15423MF_04200129, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200129) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15423MF_04200129, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200129) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_04200130) - 1) AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) .
FILTER ((BOUND(?thisPositionOn34) && BOUND(?thisPositionOn35))) .
BIND(URI(CONCAT(STR(?this), '#MF_04200a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionP15423149 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP15423151 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP15423MF_04200144 .
?templateMotifSequenceMatchRegionP15423149 faldo:begin ?templateMotifSequenceMatchBeginP15423150 .
?templateMotifSequenceMatchBeginP15423150 faldo:position ?templateMotifSequenceMatchBeginPositionP15423145 ;
faldo:reference isoform:P15423-1 .
?templateMotifSequenceProfileAlignmentOperationP15423151 edam:has_input signature:MF_04200 ;
rdf:type edam:operation_0300 .
?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04200155 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP15423MF_04200146 .
?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04200154 .
?targetMotifMatchRegionMatchBeginMF_04200154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04200147 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04200155 edam:has_input signature:MF_04200 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15423MF_04200144, 1, (STRLEN(?templateMotifCigarP15423MF_04200144) - STRLEN(REPLACE(?templateMotifCigarP15423MF_04200144, CONCAT('^(?:-*[^-]){', STR(((1136 - ?templateMotifSequenceMatchBeginPositionP15423145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15423MF_04200146, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200146) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15423MF_04200146, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200146) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) .
BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_04200147) - 1) AS ?thisPositionOn40) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15423MF_04200144, 1, (STRLEN(?templateMotifCigarP15423MF_04200144) - STRLEN(REPLACE(?templateMotifCigarP15423MF_04200144, CONCAT('^(?:-*[^-]){', STR(((1173 - ?templateMotifSequenceMatchBeginPositionP15423145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15423MF_04200146, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200146) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15423MF_04200146, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200146) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) .
BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_04200147) - 1) AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t160) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) .
FILTER ((BOUND(?thisPositionOn40) && BOUND(?thisPositionOn41))) .
BIND(URI(CONCAT(STR(?this), '#MF_04200a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch165 faldo:location ?templateMotifSequenceMatchRegionP15423166 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP15423168 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP15423MF_04200161 .
?templateMotifSequenceMatchRegionP15423166 faldo:begin ?templateMotifSequenceMatchBeginP15423167 .
?templateMotifSequenceMatchBeginP15423167 faldo:position ?templateMotifSequenceMatchBeginPositionP15423162 ;
faldo:reference isoform:P15423-1 .
?templateMotifSequenceProfileAlignmentOperationP15423168 edam:has_input signature:MF_04200 ;
rdf:type edam:operation_0300 .
?targetMotifMatch169 faldo:location ?targetMotifMatchRegionMatch170 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04200172 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP15423MF_04200163 .
?targetMotifMatchRegionMatch170 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04200171 .
?targetMotifMatchRegionMatchBeginMF_04200171 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04200164 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04200172 edam:has_input signature:MF_04200 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15423MF_04200161, 1, (STRLEN(?templateMotifCigarP15423MF_04200161) - STRLEN(REPLACE(?templateMotifCigarP15423MF_04200161, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionP15423162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15423MF_04200163, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200163) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15423MF_04200163, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200163) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) .
BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_04200164) - 1) AS ?thisPositionOn46) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15423MF_04200161, 1, (STRLEN(?templateMotifCigarP15423MF_04200161) - STRLEN(REPLACE(?templateMotifCigarP15423MF_04200161, CONCAT('^(?:-*[^-]){', STR(((536 - ?templateMotifSequenceMatchBeginPositionP15423162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15423MF_04200163, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200163) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15423MF_04200163, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200163) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) .
BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_04200164) - 1) AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t177) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse45) .
FILTER ((BOUND(?thisPositionOn46) && BOUND(?thisPositionOn47))) .
BIND(URI(CONCAT(STR(?this), '#MF_04200a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionP15423183 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP15423185 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP15423MF_04200178 .
?templateMotifSequenceMatchRegionP15423183 faldo:begin ?templateMotifSequenceMatchBeginP15423184 .
?templateMotifSequenceMatchBeginP15423184 faldo:position ?templateMotifSequenceMatchBeginPositionP15423179 ;
faldo:reference isoform:P15423-1 .
?templateMotifSequenceProfileAlignmentOperationP15423185 edam:has_input signature:MF_04200 ;
rdf:type edam:operation_0300 .
?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04200189 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP15423MF_04200180 .
?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04200188 .
?targetMotifMatchRegionMatchBeginMF_04200188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04200181 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04200189 edam:has_input signature:MF_04200 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15423MF_04200178, 1, (STRLEN(?templateMotifCigarP15423MF_04200178) - STRLEN(REPLACE(?templateMotifCigarP15423MF_04200178, CONCAT('^(?:-*[^-]){', STR(((537 - ?templateMotifSequenceMatchBeginPositionP15423179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15423MF_04200180, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200180) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15423MF_04200180, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200180) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) .
BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_04200181) - 1) AS ?thisPositionOn52) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15423MF_04200178, 1, (STRLEN(?templateMotifCigarP15423MF_04200178) - STRLEN(REPLACE(?templateMotifCigarP15423MF_04200178, CONCAT('^(?:-*[^-]){', STR(((1173 - ?templateMotifSequenceMatchBeginPositionP15423179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15423MF_04200180, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200180) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15423MF_04200180, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200180) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) .
BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_04200181) - 1) AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t194) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse51) .
FILTER ((BOUND(?thisPositionOn52) && BOUND(?thisPositionOn53))) .
BIND(URI(CONCAT(STR(?this), '#MF_04200a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch199 faldo:location ?templateMotifSequenceMatchRegionP15423200 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP15423202 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP15423MF_04200195 .
?templateMotifSequenceMatchRegionP15423200 faldo:begin ?templateMotifSequenceMatchBeginP15423201 .
?templateMotifSequenceMatchBeginP15423201 faldo:position ?templateMotifSequenceMatchBeginPositionP15423196 ;
faldo:reference isoform:P15423-1 .
?templateMotifSequenceProfileAlignmentOperationP15423202 edam:has_input signature:MF_04200 ;
rdf:type edam:operation_0300 .
?targetMotifMatch203 faldo:location ?targetMotifMatchRegionMatch204 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04200206 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP15423MF_04200197 .
?targetMotifMatchRegionMatch204 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04200205 .
?targetMotifMatchRegionMatchBeginMF_04200205 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04200198 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04200206 edam:has_input signature:MF_04200 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15423MF_04200195, 1, (STRLEN(?templateMotifCigarP15423MF_04200195) - STRLEN(REPLACE(?templateMotifCigarP15423MF_04200195, CONCAT('^(?:-*[^-]){', STR(((753 - ?templateMotifSequenceMatchBeginPositionP15423196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1207) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15423MF_04200197, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200197) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15423MF_04200197, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200197) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), '')))), '[^-]', ''))) AS ?step2208) .
BIND(((?step2208 + ?targetMotifMatchRegionMatchBeginPositionMF_04200198) - 1) AS ?thisPositionOn58) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15423MF_04200195, 1, (STRLEN(?templateMotifCigarP15423MF_04200195) - STRLEN(REPLACE(?templateMotifCigarP15423MF_04200195, CONCAT('^(?:-*[^-]){', STR(((773 - ?templateMotifSequenceMatchBeginPositionP15423196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1209) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15423MF_04200197, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200197) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15423MF_04200197, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200197) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), '')))), '[^-]', ''))) AS ?step2210) .
BIND(((?step2210 + ?targetMotifMatchRegionMatchBeginPositionMF_04200198) - 1) AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t211) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse57) .
FILTER ((BOUND(?thisPositionOn58) && BOUND(?thisPositionOn59))) .
BIND(URI(CONCAT(STR(?this), '#MF_04200a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch216 faldo:location ?templateMotifSequenceMatchRegionP15423217 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP15423219 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP15423MF_04200212 .
?templateMotifSequenceMatchRegionP15423217 faldo:begin ?templateMotifSequenceMatchBeginP15423218 .
?templateMotifSequenceMatchBeginP15423218 faldo:position ?templateMotifSequenceMatchBeginPositionP15423213 ;
faldo:reference isoform:P15423-1 .
?templateMotifSequenceProfileAlignmentOperationP15423219 edam:has_input signature:MF_04200 ;
rdf:type edam:operation_0300 .
?targetMotifMatch220 faldo:location ?targetMotifMatchRegionMatch221 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04200223 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP15423MF_04200214 .
?targetMotifMatchRegionMatch221 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04200222 .
?targetMotifMatchRegionMatchBeginMF_04200222 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04200215 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04200223 edam:has_input signature:MF_04200 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15423MF_04200212, 1, (STRLEN(?templateMotifCigarP15423MF_04200212) - STRLEN(REPLACE(?templateMotifCigarP15423MF_04200212, CONCAT('^(?:-*[^-]){', STR(((834 - ?templateMotifSequenceMatchBeginPositionP15423213) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1224) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15423MF_04200214, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200214) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15423MF_04200214, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200214) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), '')))), '[^-]', ''))) AS ?step2225) .
BIND(((?step2225 + ?targetMotifMatchRegionMatchBeginPositionMF_04200215) - 1) AS ?thisPositionOn64) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15423MF_04200212, 1, (STRLEN(?templateMotifCigarP15423MF_04200212) - STRLEN(REPLACE(?templateMotifCigarP15423MF_04200212, CONCAT('^(?:-*[^-]){', STR(((878 - ?templateMotifSequenceMatchBeginPositionP15423213) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1226) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15423MF_04200214, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200214) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15423MF_04200214, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200214) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), '')))), '[^-]', ''))) AS ?step2227) .
BIND(((?step2227 + ?targetMotifMatchRegionMatchBeginPositionMF_04200215) - 1) AS ?thisPositionOn65) .
BIND(?this AS ?pfs1t228) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse63) .
FILTER ((BOUND(?thisPositionOn64) && BOUND(?thisPositionOn65))) .
BIND(URI(CONCAT(STR(?this), '#MF_04200a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch233 faldo:location ?templateMotifSequenceMatchRegionP15423234 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP15423236 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP15423MF_04200229 .
?templateMotifSequenceMatchRegionP15423234 faldo:begin ?templateMotifSequenceMatchBeginP15423235 .
?templateMotifSequenceMatchBeginP15423235 faldo:position ?templateMotifSequenceMatchBeginPositionP15423230 ;
faldo:reference isoform:P15423-1 .
?templateMotifSequenceProfileAlignmentOperationP15423236 edam:has_input signature:MF_04200 ;
rdf:type edam:operation_0300 .
?targetMotifMatch237 faldo:location ?targetMotifMatchRegionMatch238 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04200240 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP15423MF_04200231 .
?targetMotifMatchRegionMatch238 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04200239 .
?targetMotifMatchRegionMatchBeginMF_04200239 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04200232 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04200240 edam:has_input signature:MF_04200 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15423MF_04200229, 1, (STRLEN(?templateMotifCigarP15423MF_04200229) - STRLEN(REPLACE(?templateMotifCigarP15423MF_04200229, CONCAT('^(?:-*[^-]){', STR(((1063 - ?templateMotifSequenceMatchBeginPositionP15423230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1241) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15423MF_04200231, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200231) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15423MF_04200231, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200231) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), '')))), '[^-]', ''))) AS ?step2242) .
BIND(((?step2242 + ?targetMotifMatchRegionMatchBeginPositionMF_04200232) - 1) AS ?thisPositionOn70) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15423MF_04200229, 1, (STRLEN(?templateMotifCigarP15423MF_04200229) - STRLEN(REPLACE(?templateMotifCigarP15423MF_04200229, CONCAT('^(?:-*[^-]){', STR(((1105 - ?templateMotifSequenceMatchBeginPositionP15423230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1243) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15423MF_04200231, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200231) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15423MF_04200231, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200231) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), '')))), '[^-]', ''))) AS ?step2244) .
BIND(((?step2244 + ?targetMotifMatchRegionMatchBeginPositionMF_04200232) - 1) AS ?thisPositionOn71) .
BIND(?this AS ?pfs1t245) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse69) .
FILTER ((BOUND(?thisPositionOn70) && BOUND(?thisPositionOn71))) .
BIND(URI(CONCAT(STR(?this), '#MF_04200a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch250 faldo:location ?templateMotifSequenceMatchRegionP15423251 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP15423253 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP15423MF_04200246 .
?templateMotifSequenceMatchRegionP15423251 faldo:begin ?templateMotifSequenceMatchBeginP15423252 .
?templateMotifSequenceMatchBeginP15423252 faldo:position ?templateMotifSequenceMatchBeginPositionP15423247 ;
faldo:reference isoform:P15423-1 .
?templateMotifSequenceProfileAlignmentOperationP15423253 edam:has_input signature:MF_04200 ;
rdf:type edam:operation_0300 .
?targetMotifMatch254 faldo:location ?targetMotifMatchRegionMatch255 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04200257 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP15423MF_04200248 .
?targetMotifMatchRegionMatch255 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04200256 .
?targetMotifMatchRegionMatchBeginMF_04200256 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04200249 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04200257 edam:has_input signature:MF_04200 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15423MF_04200246, 1, (STRLEN(?templateMotifCigarP15423MF_04200246) - STRLEN(REPLACE(?templateMotifCigarP15423MF_04200246, CONCAT('^(?:-*[^-]){', STR(((1169 - ?templateMotifSequenceMatchBeginPositionP15423247) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1258) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15423MF_04200248, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200248) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15423MF_04200248, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200248) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), '')))), '[^-]', ''))) AS ?step2259) .
BIND(((?step2259 + ?targetMotifMatchRegionMatchBeginPositionMF_04200249) - 1) AS ?thisPositionOn76) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP15423MF_04200246, 1, (STRLEN(?templateMotifCigarP15423MF_04200246) - STRLEN(REPLACE(?templateMotifCigarP15423MF_04200246, CONCAT('^(?:-*[^-]){', STR(((1173 - ?templateMotifSequenceMatchBeginPositionP15423247) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1260) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP15423MF_04200248, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200248) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP15423MF_04200248, 1, (STRLEN(?targetMotifMatchCigarP15423MF_04200248) - STRLEN(REPLACE(?targetMotifMatchCigarP15423MF_04200248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), '')))), '[^-]', ''))) AS ?step2261) .
BIND(((?step2261 + ?targetMotifMatchRegionMatchBeginPositionMF_04200249) - 1) AS ?thisPositionOn77) .
BIND(?this AS ?pfs1t262) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse75) .
FILTER (REGEX('K[ARNDCQEGHILKMFPSTWYVBZJUOX]H[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn76, (?thisPositionOn77 - ?thisPositionOn76)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04200a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
}
"xsd:string |
