| http://purl.uniprot.org/unirules/MF_00172#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:68965 up:source unirule:MF_00172 .
_:68966 up:source unirule:MF_00172 .
_:68967 up:source unirule:MF_00172 .
_:68968 up:source unirule:MF_00172 .
_:68969 up:source unirule:MF_00172 .
_:68970 up:source unirule:MF_00172 .
_:68971 up:source unirule:MF_00172 .
_:68972 up:source unirule:MF_00172 .
_:68973 up:source unirule:MF_00172 .
_:68974 up:source unirule:MF_00172 .
_:68975 up:source unirule:MF_00172 .
_:68976 up:source unirule:MF_00172 .
_:68977 up:source unirule:MF_00172 .
_:68978 up:source unirule:MF_00172 .
_:68979 up:source unirule:MF_00172 .
_:68980 up:source unirule:MF_00172 .
_:68981 up:source unirule:MF_00172 .
_:68982 up:source unirule:MF_00172 .
_:68983 up:source unirule:MF_00172 .
_:68984 up:source unirule:MF_00172 .
_:68985 up:source unirule:MF_00172 .
_:68986 up:source unirule:MF_00172 .
_:68987 up:source unirule:MF_00172 .
_:68988 up:source unirule:MF_00172 .
_:68989 up:source unirule:MF_00172 .
_:68990 up:source unirule:MF_00172 .
_:68991 up:source unirule:MF_00172 .
_:68992 up:source unirule:MF_00172 .
_:68993 up:source unirule:MF_00172 .
_:68994 up:source unirule:MF_00172 .
_:68995 up:source unirule:MF_00172 .
_:68996 up:source unirule:MF_00172 .
_:68997 up:source unirule:MF_00172 .
_:68998 up:source unirule:MF_00172 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0003871 ,
GO:0009086 ,
keyword:28 ,
keyword:479 ,
keyword:486 ,
keyword:489 ,
keyword:677 ,
keyword:808 ,
keyword:862 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.14' ;
up:fullName '5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Cobalamin-independent methionine synthase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Methionine synthase, vitamin-B12 independent isozyme' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'metE' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine resulting in methionine formation.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:29105 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 zinc ion per subunit.' .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-methionine from L-homocysteine (MetE route): step 1/1.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the vitamin-B12 independent methionine synthase family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:58207 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:58199 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:57844 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:58207 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:29105 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:29105 .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf chebi:29105 .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
up:ligand ?ligand69 ;
rdf:type up:Binding_Site_Annotation .
?pfsb67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?ligand69 rdfs:subClassOf chebi:29105 .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
up:ligand ?ligand76 ;
rdf:type up:Binding_Site_Annotation .
?pfsb74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand76 rdfs:subClassOf chebi:58207 .
?pfs79 up:annotation ?annotation80 .
?annotation80 faldo:begin ?pfsb81 ;
faldo:end ?pfse82 ;
up:ligand ?ligand83 ;
rdf:type up:Binding_Site_Annotation .
?pfsb81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?ligand83 rdfs:subClassOf chebi:58199 .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
up:ligand ?ligand90 ;
rdf:type up:Binding_Site_Annotation .
?pfsb88 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?ligand90 rdfs:subClassOf chebi:57844 .
?pfs93 up:annotation ?annotation94 .
?annotation94 faldo:begin ?pfsb95 ;
faldo:end ?pfse96 ;
up:ligand ?ligand97 ;
rdf:type up:Binding_Site_Annotation .
?pfsb95 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?pfse96 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?ligand97 rdfs:subClassOf chebi:58207 .
?pfs100 up:annotation ?annotation101 .
?annotation101 faldo:begin ?pfsb102 ;
faldo:end ?pfse103 ;
up:ligand ?ligand104 ;
rdf:type up:Binding_Site_Annotation .
?pfsb102 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?pfse103 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?ligand104 rdfs:subClassOf chebi:58199 .
?pfs107 up:annotation ?annotation108 .
?annotation108 faldo:begin ?pfsb109 ;
faldo:end ?pfse110 ;
up:ligand ?ligand111 ;
rdf:type up:Binding_Site_Annotation .
?pfsb109 faldo:position ?thisPositionOn112 ;
rdf:type faldo:ExactPosition .
?pfse110 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?ligand111 rdfs:subClassOf chebi:57844 .
?pfs114 up:annotation ?annotation115 .
?annotation115 faldo:begin ?pfsb116 ;
faldo:end ?pfse117 ;
up:ligand ?ligand118 ;
rdf:type up:Binding_Site_Annotation .
?pfsb116 faldo:position ?thisPositionOn119 ;
rdf:type faldo:ExactPosition .
?pfse117 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?ligand118 rdfs:subClassOf chebi:58207 .
_:68999 a rdf:Statement ;
up:attribution _:68965 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:69000 a rdf:Statement ;
up:attribution _:68966 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:69001 a rdf:Statement ;
up:attribution _:68967 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:69002 a rdf:Statement ;
up:attribution _:68968 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:69003 a rdf:Statement ;
up:attribution _:68969 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:69004 a rdf:Statement ;
up:attribution _:68970 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:69005 a rdf:Statement ;
up:attribution _:68971 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:69006 a rdf:Statement ;
up:attribution _:68972 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:69007 a rdf:Statement ;
up:attribution _:68973 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:69008 a rdf:Statement ;
up:attribution _:68974 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:69009 a rdf:Statement ;
up:attribution _:68975 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:69010 a rdf:Statement ;
up:attribution _:68976 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:486 .
_:69011 a rdf:Statement ;
up:attribution _:68977 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:69012 a rdf:Statement ;
up:attribution _:68978 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:677 .
_:69013 a rdf:Statement ;
up:attribution _:68979 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:69014 a rdf:Statement ;
up:attribution _:68980 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:69015 a rdf:Statement ;
up:attribution _:68981 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003871 .
_:69016 a rdf:Statement ;
up:attribution _:68982 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009086 .
_:69017 a rdf:Statement ;
up:source unirule:MF_00172 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:69018 a rdf:Statement ;
up:attribution _:68983 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:69019 a rdf:Statement ;
up:source unirule:MF_00172 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:69020 a rdf:Statement ;
up:attribution _:68984 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:69021 a rdf:Statement ;
up:source unirule:MF_00172 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:69022 a rdf:Statement ;
up:attribution _:68985 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:69023 a rdf:Statement ;
up:source unirule:MF_00172 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:69024 a rdf:Statement ;
up:attribution _:68986 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:69025 a rdf:Statement ;
up:source unirule:MF_00172 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:69026 a rdf:Statement ;
up:attribution _:68987 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:69027 a rdf:Statement ;
up:source unirule:MF_00172 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:69028 a rdf:Statement ;
up:attribution _:68988 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:69029 a rdf:Statement ;
up:source unirule:MF_00172 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:69030 a rdf:Statement ;
up:attribution _:68989 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:69031 a rdf:Statement ;
up:source unirule:MF_00172 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:69032 a rdf:Statement ;
up:attribution _:68990 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:69033 a rdf:Statement ;
up:source unirule:MF_00172 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:69034 a rdf:Statement ;
up:attribution _:68991 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:69035 a rdf:Statement ;
up:source unirule:MF_00172 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:69036 a rdf:Statement ;
up:attribution _:68992 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:69037 a rdf:Statement ;
up:source unirule:MF_00172 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:69038 a rdf:Statement ;
up:attribution _:68993 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:69039 a rdf:Statement ;
up:source unirule:MF_00172 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:69040 a rdf:Statement ;
up:attribution _:68994 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:69041 a rdf:Statement ;
up:source unirule:MF_00172 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:69042 a rdf:Statement ;
up:attribution _:68995 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:69043 a rdf:Statement ;
up:source unirule:MF_00172 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:69044 a rdf:Statement ;
up:attribution _:68996 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:69045 a rdf:Statement ;
up:source unirule:MF_00172 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:69046 a rdf:Statement ;
up:attribution _:68997 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:69047 a rdf:Statement ;
up:source unirule:MF_00172 ;
rdf:subject ?pfs114 ;
rdf:predicate up:annotation ;
rdf:object ?annotation115 .
_:69048 a rdf:Statement ;
up:attribution _:68998 ;
rdf:subject ?pfs114 ;
rdf:predicate up:annotation ;
rdf:object ?annotation115 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00172
#Rule MF_00172 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00172 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00172a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00172a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00172a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00172a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00172a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00172a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00172a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00172a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch125 faldo:location ?templateMotifSequenceMatchRegionQ9X112126 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X112128 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X112MF_00172121 .
?templateMotifSequenceMatchRegionQ9X112126 faldo:begin ?templateMotifSequenceMatchBeginQ9X112127 .
?templateMotifSequenceMatchBeginQ9X112127 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X112122 ;
faldo:reference isoform:Q9X112-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X112128 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch129 faldo:location ?targetMotifMatchRegionMatch130 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00172132 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X112MF_00172123 .
?targetMotifMatchRegionMatch130 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00172131 .
?targetMotifMatchRegionMatchBeginMF_00172131 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00172124 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00172132 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X112MF_00172121, 1, (STRLEN(?templateMotifCigarQ9X112MF_00172121) - STRLEN(REPLACE(?templateMotifCigarQ9X112MF_00172121, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionQ9X112122) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1133) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172123, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172123) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172123, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172123) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), '')))), '[^-]', ''))) AS ?step2134) .
BIND(((?step2134 + ?targetMotifMatchRegionMatchBeginPositionMF_00172124) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X112MF_00172121, 1, (STRLEN(?templateMotifCigarQ9X112MF_00172121) - STRLEN(REPLACE(?templateMotifCigarQ9X112MF_00172121, CONCAT('^(?:-*[^-]){', STR(((18 - ?templateMotifSequenceMatchBeginPositionQ9X112122) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172123, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172123) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172123, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172123) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) .
BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_00172124) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER (REGEX('RE[ARNDCQEGHILKMFPSTWYVBZJUOX]K', SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00172a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch142 faldo:location ?templateMotifSequenceMatchRegionQ9X112143 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X112145 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X112MF_00172138 .
?templateMotifSequenceMatchRegionQ9X112143 faldo:begin ?templateMotifSequenceMatchBeginQ9X112144 .
?templateMotifSequenceMatchBeginQ9X112144 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X112139 ;
faldo:reference isoform:Q9X112-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X112145 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch146 faldo:location ?targetMotifMatchRegionMatch147 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00172149 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X112MF_00172140 .
?targetMotifMatchRegionMatch147 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00172148 .
?targetMotifMatchRegionMatchBeginMF_00172148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00172141 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00172149 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X112MF_00172138, 1, (STRLEN(?templateMotifCigarQ9X112MF_00172138) - STRLEN(REPLACE(?templateMotifCigarQ9X112MF_00172138, CONCAT('^(?:-*[^-]){', STR(((409 - ?templateMotifSequenceMatchBeginPositionQ9X112139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172140, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172140) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172140, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172140) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_00172141) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X112MF_00172138, 1, (STRLEN(?templateMotifCigarQ9X112MF_00172138) - STRLEN(REPLACE(?templateMotifCigarQ9X112MF_00172138, CONCAT('^(?:-*[^-]){', STR(((411 - ?templateMotifSequenceMatchBeginPositionQ9X112139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172140, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172140) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172140, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172140) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) .
BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_00172141) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t154) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)) = 'IGS')) .
BIND(URI(CONCAT(STR(?this), '#MF_00172a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch159 faldo:location ?templateMotifSequenceMatchRegionQ9X112160 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X112162 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X112MF_00172155 .
?templateMotifSequenceMatchRegionQ9X112160 faldo:begin ?templateMotifSequenceMatchBeginQ9X112161 .
?templateMotifSequenceMatchBeginQ9X112161 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X112156 ;
faldo:reference isoform:Q9X112-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X112162 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch163 faldo:location ?targetMotifMatchRegionMatch164 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00172166 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X112MF_00172157 .
?targetMotifMatchRegionMatch164 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00172165 .
?targetMotifMatchRegionMatchBeginMF_00172165 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00172158 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00172166 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X112MF_00172155, 1, (STRLEN(?templateMotifCigarQ9X112MF_00172155) - STRLEN(REPLACE(?templateMotifCigarQ9X112MF_00172155, CONCAT('^(?:-*[^-]){', STR(((409 - ?templateMotifSequenceMatchBeginPositionQ9X112156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172157, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172157) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172157, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172157) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) .
BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_00172158) - 1) AS ?thisPositionOn29) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X112MF_00172155, 1, (STRLEN(?templateMotifCigarQ9X112MF_00172155) - STRLEN(REPLACE(?templateMotifCigarQ9X112MF_00172155, CONCAT('^(?:-*[^-]){', STR(((411 - ?templateMotifSequenceMatchBeginPositionQ9X112156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172157, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172157) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172157, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172157) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), '')))), '[^-]', ''))) AS ?step2170) .
BIND(((?step2170 + ?targetMotifMatchRegionMatchBeginPositionMF_00172158) - 1) AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t171) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, (?thisPositionOn30 - ?thisPositionOn29)) = 'IGS')) .
BIND(URI(CONCAT(STR(?this), '#MF_00172a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch176 faldo:location ?templateMotifSequenceMatchRegionQ9X112177 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X112179 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X112MF_00172172 .
?templateMotifSequenceMatchRegionQ9X112177 faldo:begin ?templateMotifSequenceMatchBeginQ9X112178 .
?templateMotifSequenceMatchBeginQ9X112178 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X112173 ;
faldo:reference isoform:Q9X112-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X112179 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch180 faldo:location ?targetMotifMatchRegionMatch181 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00172183 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X112MF_00172174 .
?targetMotifMatchRegionMatch181 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00172182 .
?targetMotifMatchRegionMatchBeginMF_00172182 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00172175 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00172183 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X112MF_00172172, 1, (STRLEN(?templateMotifCigarQ9X112MF_00172172) - STRLEN(REPLACE(?templateMotifCigarQ9X112MF_00172172, CONCAT('^(?:-*[^-]){', STR(((493 - ?templateMotifSequenceMatchBeginPositionQ9X112173) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172174, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172174) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172174, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172174) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), '')))), '[^-]', ''))) AS ?step2185) .
BIND(((?step2185 + ?targetMotifMatchRegionMatchBeginPositionMF_00172175) - 1) AS ?thisPositionOn36) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X112MF_00172172, 1, (STRLEN(?templateMotifCigarQ9X112MF_00172172) - STRLEN(REPLACE(?templateMotifCigarQ9X112MF_00172172, CONCAT('^(?:-*[^-]){', STR(((494 - ?templateMotifSequenceMatchBeginPositionQ9X112173) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172174, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172174) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172174, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172174) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), '')))), '[^-]', ''))) AS ?step2187) .
BIND(((?step2187 + ?targetMotifMatchRegionMatchBeginPositionMF_00172175) - 1) AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t188) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, (?thisPositionOn37 - ?thisPositionOn36)) = 'RC')) .
BIND(URI(CONCAT(STR(?this), '#MF_00172a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch193 faldo:location ?templateMotifSequenceMatchRegionQ9X112194 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X112196 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X112MF_00172189 .
?templateMotifSequenceMatchRegionQ9X112194 faldo:begin ?templateMotifSequenceMatchBeginQ9X112195 .
?templateMotifSequenceMatchBeginQ9X112195 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X112190 ;
faldo:reference isoform:Q9X112-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X112196 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch197 faldo:location ?targetMotifMatchRegionMatch198 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00172200 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X112MF_00172191 .
?targetMotifMatchRegionMatch198 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00172199 .
?targetMotifMatchRegionMatchBeginMF_00172199 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00172192 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00172200 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X112MF_00172189, 1, (STRLEN(?templateMotifCigarQ9X112MF_00172189) - STRLEN(REPLACE(?templateMotifCigarQ9X112MF_00172189, CONCAT('^(?:-*[^-]){', STR(((672 - ?templateMotifSequenceMatchBeginPositionQ9X112190) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1201) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172191, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172191) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172191, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172191) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), '')))), '[^-]', ''))) AS ?step2202) .
BIND(((?step2202 + ?targetMotifMatchRegionMatchBeginPositionMF_00172192) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t203) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00172a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch208 faldo:location ?templateMotifSequenceMatchRegionQ9X112209 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X112211 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X112MF_00172204 .
?templateMotifSequenceMatchRegionQ9X112209 faldo:begin ?templateMotifSequenceMatchBeginQ9X112210 .
?templateMotifSequenceMatchBeginQ9X112210 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X112205 ;
faldo:reference isoform:Q9X112-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X112211 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch212 faldo:location ?targetMotifMatchRegionMatch213 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00172215 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X112MF_00172206 .
?targetMotifMatchRegionMatch213 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00172214 .
?targetMotifMatchRegionMatchBeginMF_00172214 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00172207 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00172215 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X112MF_00172204, 1, (STRLEN(?templateMotifCigarQ9X112MF_00172204) - STRLEN(REPLACE(?templateMotifCigarQ9X112MF_00172204, CONCAT('^(?:-*[^-]){', STR(((618 - ?templateMotifSequenceMatchBeginPositionQ9X112205) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1216) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172206, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172206) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172206, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172206) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172206, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), '')))), '[^-]', ''))) AS ?step2217) .
BIND(((?step2217 + ?targetMotifMatchRegionMatchBeginPositionMF_00172207) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t218) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00172a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch223 faldo:location ?templateMotifSequenceMatchRegionQ9X112224 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X112226 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X112MF_00172219 .
?templateMotifSequenceMatchRegionQ9X112224 faldo:begin ?templateMotifSequenceMatchBeginQ9X112225 .
?templateMotifSequenceMatchBeginQ9X112225 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X112220 ;
faldo:reference isoform:Q9X112-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X112226 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch227 faldo:location ?targetMotifMatchRegionMatch228 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00172230 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X112MF_00172221 .
?targetMotifMatchRegionMatch228 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00172229 .
?targetMotifMatchRegionMatchBeginMF_00172229 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00172222 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00172230 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X112MF_00172219, 1, (STRLEN(?templateMotifCigarQ9X112MF_00172219) - STRLEN(REPLACE(?templateMotifCigarQ9X112MF_00172219, CONCAT('^(?:-*[^-]){', STR(((620 - ?templateMotifSequenceMatchBeginPositionQ9X112220) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1231) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172221, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172221) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172221, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172221) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), '')))), '[^-]', ''))) AS ?step2232) .
BIND(((?step2232 + ?targetMotifMatchRegionMatchBeginPositionMF_00172222) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t233) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00172a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch238 faldo:location ?templateMotifSequenceMatchRegionQ9X112239 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X112241 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X112MF_00172234 .
?templateMotifSequenceMatchRegionQ9X112239 faldo:begin ?templateMotifSequenceMatchBeginQ9X112240 .
?templateMotifSequenceMatchBeginQ9X112240 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X112235 ;
faldo:reference isoform:Q9X112-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X112241 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch242 faldo:location ?targetMotifMatchRegionMatch243 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00172245 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X112MF_00172236 .
?targetMotifMatchRegionMatch243 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00172244 .
?targetMotifMatchRegionMatchBeginMF_00172244 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00172237 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00172245 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X112MF_00172234, 1, (STRLEN(?templateMotifCigarQ9X112MF_00172234) - STRLEN(REPLACE(?templateMotifCigarQ9X112MF_00172234, CONCAT('^(?:-*[^-]){', STR(((642 - ?templateMotifSequenceMatchBeginPositionQ9X112235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1246) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172236, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172236) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172236, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172236) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), '')))), '[^-]', ''))) AS ?step2247) .
BIND(((?step2247 + ?targetMotifMatchRegionMatchBeginPositionMF_00172237) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs1t248) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00172a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch253 faldo:location ?templateMotifSequenceMatchRegionQ9X112254 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X112256 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X112MF_00172249 .
?templateMotifSequenceMatchRegionQ9X112254 faldo:begin ?templateMotifSequenceMatchBeginQ9X112255 .
?templateMotifSequenceMatchBeginQ9X112255 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X112250 ;
faldo:reference isoform:Q9X112-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X112256 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch257 faldo:location ?targetMotifMatchRegionMatch258 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00172260 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X112MF_00172251 .
?targetMotifMatchRegionMatch258 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00172259 .
?targetMotifMatchRegionMatchBeginMF_00172259 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00172252 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00172260 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X112MF_00172249, 1, (STRLEN(?templateMotifCigarQ9X112MF_00172249) - STRLEN(REPLACE(?templateMotifCigarQ9X112MF_00172249, CONCAT('^(?:-*[^-]){', STR(((704 - ?templateMotifSequenceMatchBeginPositionQ9X112250) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1261) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172251, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172251) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172251, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172251) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), '')))), '[^-]', ''))) AS ?step2262) .
BIND(((?step2262 + ?targetMotifMatchRegionMatchBeginPositionMF_00172252) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs1t263) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00172a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch268 faldo:location ?templateMotifSequenceMatchRegionQ9X112269 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X112271 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X112MF_00172264 .
?templateMotifSequenceMatchRegionQ9X112269 faldo:begin ?templateMotifSequenceMatchBeginQ9X112270 .
?templateMotifSequenceMatchBeginQ9X112270 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X112265 ;
faldo:reference isoform:Q9X112-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X112271 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch272 faldo:location ?targetMotifMatchRegionMatch273 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00172275 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X112MF_00172266 .
?targetMotifMatchRegionMatch273 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00172274 .
?targetMotifMatchRegionMatchBeginMF_00172274 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00172267 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00172275 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X112MF_00172264, 1, (STRLEN(?templateMotifCigarQ9X112MF_00172264) - STRLEN(REPLACE(?templateMotifCigarQ9X112MF_00172264, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionQ9X112265) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1276) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172266, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172266) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172266, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172266) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), '')))), '[^-]', ''))) AS ?step2277) .
BIND(((?step2277 + ?targetMotifMatchRegionMatchBeginPositionMF_00172267) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs1t278) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) .
FILTER (REGEX('[KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00172a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch283 faldo:location ?templateMotifSequenceMatchRegionQ9X112284 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X112286 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X112MF_00172279 .
?templateMotifSequenceMatchRegionQ9X112284 faldo:begin ?templateMotifSequenceMatchBeginQ9X112285 .
?templateMotifSequenceMatchBeginQ9X112285 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X112280 ;
faldo:reference isoform:Q9X112-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X112286 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch287 faldo:location ?targetMotifMatchRegionMatch288 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00172290 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X112MF_00172281 .
?targetMotifMatchRegionMatch288 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00172289 .
?targetMotifMatchRegionMatchBeginMF_00172289 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00172282 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00172290 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X112MF_00172279, 1, (STRLEN(?templateMotifCigarQ9X112MF_00172279) - STRLEN(REPLACE(?templateMotifCigarQ9X112MF_00172279, CONCAT('^(?:-*[^-]){', STR(((462 - ?templateMotifSequenceMatchBeginPositionQ9X112280) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1291) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172281, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172281) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1291), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172281, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172281) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1291), '}'), '')))), '[^-]', ''))) AS ?step2292) .
BIND(((?step2292 + ?targetMotifMatchRegionMatchBeginPositionMF_00172282) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs1t293) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse82) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00172a80')) AS ?annotation80) .
BIND(?this AS ?pfs79) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch298 faldo:location ?templateMotifSequenceMatchRegionQ9X112299 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X112301 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X112MF_00172294 .
?templateMotifSequenceMatchRegionQ9X112299 faldo:begin ?templateMotifSequenceMatchBeginQ9X112300 .
?templateMotifSequenceMatchBeginQ9X112300 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X112295 ;
faldo:reference isoform:Q9X112-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X112301 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch302 faldo:location ?targetMotifMatchRegionMatch303 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00172305 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X112MF_00172296 .
?targetMotifMatchRegionMatch303 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00172304 .
?targetMotifMatchRegionMatchBeginMF_00172304 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00172297 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00172305 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X112MF_00172294, 1, (STRLEN(?templateMotifCigarQ9X112MF_00172294) - STRLEN(REPLACE(?templateMotifCigarQ9X112MF_00172294, CONCAT('^(?:-*[^-]){', STR(((462 - ?templateMotifSequenceMatchBeginPositionQ9X112295) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1306) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172296, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172296) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172296, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1306), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172296, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172296) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172296, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1306), '}'), '')))), '[^-]', ''))) AS ?step2307) .
BIND(((?step2307 + ?targetMotifMatchRegionMatchBeginPositionMF_00172297) - 1) AS ?thisPositionOn91) .
BIND(?thisPositionOn91 AS ?thisPositionOn92) .
BIND(?this AS ?pfs1t308) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse89) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00172a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch313 faldo:location ?templateMotifSequenceMatchRegionQ9X112314 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X112316 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X112MF_00172309 .
?templateMotifSequenceMatchRegionQ9X112314 faldo:begin ?templateMotifSequenceMatchBeginQ9X112315 .
?templateMotifSequenceMatchBeginQ9X112315 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X112310 ;
faldo:reference isoform:Q9X112-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X112316 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch317 faldo:location ?targetMotifMatchRegionMatch318 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00172320 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X112MF_00172311 .
?targetMotifMatchRegionMatch318 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00172319 .
?targetMotifMatchRegionMatchBeginMF_00172319 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00172312 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00172320 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X112MF_00172309, 1, (STRLEN(?templateMotifCigarQ9X112MF_00172309) - STRLEN(REPLACE(?templateMotifCigarQ9X112MF_00172309, CONCAT('^(?:-*[^-]){', STR(((539 - ?templateMotifSequenceMatchBeginPositionQ9X112310) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1321) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172311, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172311) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172311, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1321), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172311, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172311) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172311, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1321), '}'), '')))), '[^-]', ''))) AS ?step2322) .
BIND(((?step2322 + ?targetMotifMatchRegionMatchBeginPositionMF_00172312) - 1) AS ?thisPositionOn98) .
BIND(?thisPositionOn98 AS ?thisPositionOn99) .
BIND(?this AS ?pfs1t323) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfsb95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfse96) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn98, 1) = 'W')) .
BIND(URI(CONCAT(STR(?this), '#MF_00172a94')) AS ?annotation94) .
BIND(?this AS ?pfs93) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch328 faldo:location ?templateMotifSequenceMatchRegionQ9X112329 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X112331 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X112MF_00172324 .
?templateMotifSequenceMatchRegionQ9X112329 faldo:begin ?templateMotifSequenceMatchBeginQ9X112330 .
?templateMotifSequenceMatchBeginQ9X112330 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X112325 ;
faldo:reference isoform:Q9X112-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X112331 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch332 faldo:location ?targetMotifMatchRegionMatch333 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00172335 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X112MF_00172326 .
?targetMotifMatchRegionMatch333 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00172334 .
?targetMotifMatchRegionMatchBeginMF_00172334 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00172327 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00172335 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X112MF_00172324, 1, (STRLEN(?templateMotifCigarQ9X112MF_00172324) - STRLEN(REPLACE(?templateMotifCigarQ9X112MF_00172324, CONCAT('^(?:-*[^-]){', STR(((577 - ?templateMotifSequenceMatchBeginPositionQ9X112325) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1336) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172326, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172326) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172326, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1336), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172326, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172326) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172326, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1336), '}'), '')))), '[^-]', ''))) AS ?step2337) .
BIND(((?step2337 + ?targetMotifMatchRegionMatchBeginPositionMF_00172327) - 1) AS ?thisPositionOn105) .
BIND(?thisPositionOn105 AS ?thisPositionOn106) .
BIND(?this AS ?pfs1t338) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse103) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00172a101')) AS ?annotation101) .
BIND(?this AS ?pfs100) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch343 faldo:location ?templateMotifSequenceMatchRegionQ9X112344 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X112346 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X112MF_00172339 .
?templateMotifSequenceMatchRegionQ9X112344 faldo:begin ?templateMotifSequenceMatchBeginQ9X112345 .
?templateMotifSequenceMatchBeginQ9X112345 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X112340 ;
faldo:reference isoform:Q9X112-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X112346 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch347 faldo:location ?targetMotifMatchRegionMatch348 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00172350 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X112MF_00172341 .
?targetMotifMatchRegionMatch348 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00172349 .
?targetMotifMatchRegionMatchBeginMF_00172349 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00172342 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00172350 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X112MF_00172339, 1, (STRLEN(?templateMotifCigarQ9X112MF_00172339) - STRLEN(REPLACE(?templateMotifCigarQ9X112MF_00172339, CONCAT('^(?:-*[^-]){', STR(((577 - ?templateMotifSequenceMatchBeginPositionQ9X112340) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1351) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172341, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172341) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1351), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172341, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172341) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1351), '}'), '')))), '[^-]', ''))) AS ?step2352) .
BIND(((?step2352 + ?targetMotifMatchRegionMatchBeginPositionMF_00172342) - 1) AS ?thisPositionOn112) .
BIND(?thisPositionOn112 AS ?thisPositionOn113) .
BIND(?this AS ?pfs1t353) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfsb109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfse110) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn112, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00172a108')) AS ?annotation108) .
BIND(?this AS ?pfs107) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch358 faldo:location ?templateMotifSequenceMatchRegionQ9X112359 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9X112361 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9X112MF_00172354 .
?templateMotifSequenceMatchRegionQ9X112359 faldo:begin ?templateMotifSequenceMatchBeginQ9X112360 .
?templateMotifSequenceMatchBeginQ9X112360 faldo:position ?templateMotifSequenceMatchBeginPositionQ9X112355 ;
faldo:reference isoform:Q9X112-1 .
?templateMotifSequenceProfileAlignmentOperationQ9X112361 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
?targetMotifMatch362 faldo:location ?targetMotifMatchRegionMatch363 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00172365 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9X112MF_00172356 .
?targetMotifMatchRegionMatch363 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00172364 .
?targetMotifMatchRegionMatchBeginMF_00172364 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00172357 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00172365 edam:has_input signature:MF_00172 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9X112MF_00172354, 1, (STRLEN(?templateMotifCigarQ9X112MF_00172354) - STRLEN(REPLACE(?templateMotifCigarQ9X112MF_00172354, CONCAT('^(?:-*[^-]){', STR(((583 - ?templateMotifSequenceMatchBeginPositionQ9X112355) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1366) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172356, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172356) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172356, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1366), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9X112MF_00172356, 1, (STRLEN(?targetMotifMatchCigarQ9X112MF_00172356) - STRLEN(REPLACE(?targetMotifMatchCigarQ9X112MF_00172356, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1366), '}'), '')))), '[^-]', ''))) AS ?step2367) .
BIND(((?step2367 + ?targetMotifMatchRegionMatchBeginPositionMF_00172357) - 1) AS ?thisPositionOn119) .
BIND(?thisPositionOn119 AS ?thisPositionOn120) .
BIND(?this AS ?pfs1t368) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn119))) AS ?pfsb116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfse117) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn119, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00172a115')) AS ?annotation115) .
BIND(?this AS ?pfs114) .
}
}
"xsd:string |
