| http://purl.uniprot.org/unirules/MF_00209#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:87477 up:source unirule:MF_00209 .
_:87478 up:source unirule:MF_00209 .
_:87479 up:source unirule:MF_00209 .
_:87480 up:source unirule:MF_00209 .
_:87481 up:source unirule:MF_00209 .
_:87482 up:source unirule:MF_00209 .
_:87483 up:source unirule:MF_00209 .
_:87484 up:source unirule:MF_00209 .
_:87485 up:source unirule:MF_00209 .
_:87486 up:source unirule:MF_00209 .
_:87487 up:source unirule:MF_00209 .
_:87488 up:source unirule:MF_00209 .
_:87489 up:source unirule:MF_00209 .
_:87490 up:source unirule:MF_00209 .
_:87491 up:source unirule:MF_00209 .
_:87492 up:source unirule:MF_00209 .
_:87493 up:source unirule:MF_00209 .
_:87494 up:source unirule:MF_00209 .
_:87495 up:source unirule:MF_00209 .
_:87496 up:source unirule:MF_00209 .
_:87497 up:source unirule:MF_00209 .
_:87498 up:source unirule:MF_00209 .
_:87499 up:source unirule:MF_00209 .
_:87500 up:source unirule:MF_00209 .
_:87501 up:source unirule:MF_00209 .
_:87502 up:source unirule:MF_00209 .
_:87503 up:source unirule:MF_00209 .
_:87504 up:source unirule:MF_00209 .
_:87505 up:source unirule:MF_00209 .
_:87506 up:source unirule:MF_00209 .
_:87507 up:source unirule:MF_00209 .
_:87508 up:source unirule:MF_00209 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation10 ;
up:classifiedWith GO:0000287 ,
GO:0004427 ,
GO:0005737 ,
keyword:378 ,
keyword:460 ,
keyword:479 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.6.1.1' ;
up:fullName 'Inorganic pyrophosphatase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Pyrophosphate phospho-hydrolase' ;
up:shortName 'PPase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'ppa' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homohexamer.' .
?annotation8 a up:Subcellular_Location_Annotation .
?annotation8li9 up:cellularComponent .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the PPase family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf ?molecule16 .
?molecule16 rdfs:label 'substrate' .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf ?molecule24 .
?molecule24 rdfs:label 'substrate' .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf ?molecule32 .
?molecule32 rdfs:label 'substrate' .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf ?molecule40 .
?molecule40 rdfs:label 'substrate' .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:18420 .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation .
?pfsb58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand60 rdfs:subClassOf chebi:18420 .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
up:ligand ?ligand67 ;
rdf:type up:Binding_Site_Annotation .
?pfsb65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?ligand67 rdfs:subClassOf chebi:18420 .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
up:ligand ?ligand74 ;
rdf:type up:Binding_Site_Annotation .
?pfsb72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?ligand74 rdfs:subClassOf chebi:18420 .
?pfs77 up:annotation ?annotation78 .
?annotation78 faldo:begin ?pfsb79 ;
faldo:end ?pfse80 ;
up:ligand ?ligand81 ;
rdf:type up:Binding_Site_Annotation .
?pfsb79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfse80 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?ligand81 rdfs:subClassOf chebi:18420 .
?pfs84 up:annotation ?annotation85 .
?annotation85 faldo:begin ?pfsb86 ;
faldo:end ?pfse87 ;
up:ligand ?ligand88 ;
rdf:type up:Binding_Site_Annotation .
?pfsb86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?pfse87 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?ligand88 rdfs:subClassOf chebi:18420 .
?pfs91 up:annotation ?annotation92 .
?annotation92 faldo:begin ?pfsb93 ;
faldo:end ?pfse94 ;
up:ligand ?ligand95 ;
rdf:type up:Binding_Site_Annotation .
?pfsb93 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?pfse94 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?ligand95 rdfs:subClassOf chebi:18420 .
?pfs98 up:annotation ?annotation99 .
?annotation99 faldo:begin ?pfsb100 ;
faldo:end ?pfse101 ;
up:ligand ?ligand102 ;
rdf:type up:Binding_Site_Annotation .
?pfsb100 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfse101 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
?ligand102 rdfs:subClassOf chebi:18420 .
?pfs105 up:annotation ?annotation106 .
?annotation106 faldo:begin ?pfsb107 ;
faldo:end ?pfse108 ;
up:ligand ?ligand109 ;
rdf:type up:Binding_Site_Annotation .
?pfsb107 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?pfse108 faldo:position ?thisPositionOn111 ;
rdf:type faldo:ExactPosition .
?ligand109 rdfs:subClassOf chebi:18420 .
?pfs112 up:annotation ?annotation113 .
?annotation113 faldo:begin ?pfsb114 ;
faldo:end ?pfse115 ;
up:ligand ?ligand116 ;
rdf:type up:Binding_Site_Annotation .
?pfsb114 faldo:position ?thisPositionOn117 ;
rdf:type faldo:ExactPosition .
?pfse115 faldo:position ?thisPositionOn118 ;
rdf:type faldo:ExactPosition .
?ligand116 rdfs:subClassOf chebi:18420 .
?pfs119 up:annotation ?annotation120 .
?annotation120 faldo:begin ?pfsb121 ;
faldo:end ?pfse122 ;
up:ligand ?ligand123 ;
rdf:type up:Binding_Site_Annotation .
?pfsb121 faldo:position ?thisPositionOn124 ;
rdf:type faldo:ExactPosition .
?pfse122 faldo:position ?thisPositionOn125 ;
rdf:type faldo:ExactPosition .
?ligand123 rdfs:subClassOf chebi:18420 .
_:87509 a rdf:Statement ;
up:attribution _:87477 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:87510 a rdf:Statement ;
up:attribution _:87478 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:87511 a rdf:Statement ;
up:attribution _:87479 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:87512 a rdf:Statement ;
up:attribution _:87480 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:87513 a rdf:Statement ;
up:attribution _:87481 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:87514 a rdf:Statement ;
up:attribution _:87482 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:87515 a rdf:Statement ;
up:attribution _:87483 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:87516 a rdf:Statement ;
up:attribution _:87484 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:87517 a rdf:Statement ;
up:attribution _:87485 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:87518 a rdf:Statement ;
up:attribution _:87486 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:87519 a rdf:Statement ;
up:attribution _:87487 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:87520 a rdf:Statement ;
up:attribution _:87488 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:87521 a rdf:Statement ;
up:attribution _:87489 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:87522 a rdf:Statement ;
up:attribution _:87490 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004427 .
_:87523 a rdf:Statement ;
up:attribution _:87491 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:87524 a rdf:Statement ;
up:attribution _:87492 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:87525 a rdf:Statement ;
up:source unirule:MF_00209 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:87526 a rdf:Statement ;
up:attribution _:87493 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:87527 a rdf:Statement ;
up:source unirule:MF_00209 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:87528 a rdf:Statement ;
up:attribution _:87494 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:87529 a rdf:Statement ;
up:source unirule:MF_00209 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:87530 a rdf:Statement ;
up:attribution _:87495 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:87531 a rdf:Statement ;
up:source unirule:MF_00209 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:87532 a rdf:Statement ;
up:attribution _:87496 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:87533 a rdf:Statement ;
up:source unirule:MF_00209 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:87534 a rdf:Statement ;
up:attribution _:87497 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:87535 a rdf:Statement ;
up:source unirule:MF_00209 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:87536 a rdf:Statement ;
up:attribution _:87498 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:87537 a rdf:Statement ;
up:source unirule:MF_00209 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:87538 a rdf:Statement ;
up:attribution _:87499 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:87539 a rdf:Statement ;
up:source unirule:MF_00209 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:87540 a rdf:Statement ;
up:attribution _:87500 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:87541 a rdf:Statement ;
up:source unirule:MF_00209 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:87542 a rdf:Statement ;
up:attribution _:87501 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:87543 a rdf:Statement ;
up:source unirule:MF_00209 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:87544 a rdf:Statement ;
up:attribution _:87502 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:87545 a rdf:Statement ;
up:source unirule:MF_00209 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:87546 a rdf:Statement ;
up:attribution _:87503 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:87547 a rdf:Statement ;
up:source unirule:MF_00209 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:87548 a rdf:Statement ;
up:attribution _:87504 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:87549 a rdf:Statement ;
up:source unirule:MF_00209 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:87550 a rdf:Statement ;
up:attribution _:87505 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:87551 a rdf:Statement ;
up:source unirule:MF_00209 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:87552 a rdf:Statement ;
up:attribution _:87506 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:87553 a rdf:Statement ;
up:source unirule:MF_00209 ;
rdf:subject ?pfs112 ;
rdf:predicate up:annotation ;
rdf:object ?annotation113 .
_:87554 a rdf:Statement ;
up:attribution _:87507 ;
rdf:subject ?pfs112 ;
rdf:predicate up:annotation ;
rdf:object ?annotation113 .
_:87555 a rdf:Statement ;
up:source unirule:MF_00209 ;
rdf:subject ?pfs119 ;
rdf:predicate up:annotation ;
rdf:object ?annotation120 .
_:87556 a rdf:Statement ;
up:attribution _:87508 ;
rdf:subject ?pfs119 ;
rdf:predicate up:annotation ;
rdf:object ?annotation120 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00209
#Rule MF_00209 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon126 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00209 .
?thisOrganism rdfs:subClassOf+ ?supertaxon126 .
BIND(URI(CONCAT(STR(?this), '#MF_00209a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00209a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00209a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00209a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00209a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00209a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00209a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00209a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionP9WI55132 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WI55134 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WI55MF_00209127 .
?templateMotifSequenceMatchRegionP9WI55132 faldo:begin ?templateMotifSequenceMatchBeginP9WI55133 .
?templateMotifSequenceMatchBeginP9WI55133 faldo:position ?templateMotifSequenceMatchBeginPositionP9WI55128 ;
faldo:reference isoform:P9WI55-1 .
?templateMotifSequenceProfileAlignmentOperationP9WI55134 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00209138 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WI55MF_00209129 .
?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00209137 .
?targetMotifMatchRegionMatchBeginMF_00209137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00209130 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00209138 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WI55MF_00209127, 1, (STRLEN(?templateMotifCigarP9WI55MF_00209127) - STRLEN(REPLACE(?templateMotifCigarP9WI55MF_00209127, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionP9WI55128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WI55MF_00209129, 1, (STRLEN(?targetMotifMatchCigarP9WI55MF_00209129) - STRLEN(REPLACE(?targetMotifMatchCigarP9WI55MF_00209129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WI55MF_00209129, 1, (STRLEN(?targetMotifMatchCigarP9WI55MF_00209129) - STRLEN(REPLACE(?targetMotifMatchCigarP9WI55MF_00209129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) .
BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_00209130) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t141) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00209a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch146 faldo:location ?templateMotifSequenceMatchRegionP9WI55147 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WI55149 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WI55MF_00209142 .
?templateMotifSequenceMatchRegionP9WI55147 faldo:begin ?templateMotifSequenceMatchBeginP9WI55148 .
?templateMotifSequenceMatchBeginP9WI55148 faldo:position ?templateMotifSequenceMatchBeginPositionP9WI55143 ;
faldo:reference isoform:P9WI55-1 .
?templateMotifSequenceProfileAlignmentOperationP9WI55149 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch150 faldo:location ?targetMotifMatchRegionMatch151 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00209153 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WI55MF_00209144 .
?targetMotifMatchRegionMatch151 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00209152 .
?targetMotifMatchRegionMatchBeginMF_00209152 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00209145 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00209153 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WI55MF_00209142, 1, (STRLEN(?templateMotifCigarP9WI55MF_00209142) - STRLEN(REPLACE(?templateMotifCigarP9WI55MF_00209142, CONCAT('^(?:-*[^-]){', STR(((30 - ?templateMotifSequenceMatchBeginPositionP9WI55143) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WI55MF_00209144, 1, (STRLEN(?targetMotifMatchCigarP9WI55MF_00209144) - STRLEN(REPLACE(?targetMotifMatchCigarP9WI55MF_00209144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WI55MF_00209144, 1, (STRLEN(?targetMotifMatchCigarP9WI55MF_00209144) - STRLEN(REPLACE(?targetMotifMatchCigarP9WI55MF_00209144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), '')))), '[^-]', ''))) AS ?step2155) .
BIND(((?step2155 + ?targetMotifMatchRegionMatchBeginPositionMF_00209145) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t156) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00209a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch161 faldo:location ?templateMotifSequenceMatchRegionP9WI55162 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WI55164 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WI55MF_00209157 .
?templateMotifSequenceMatchRegionP9WI55162 faldo:begin ?templateMotifSequenceMatchBeginP9WI55163 .
?templateMotifSequenceMatchBeginP9WI55163 faldo:position ?templateMotifSequenceMatchBeginPositionP9WI55158 ;
faldo:reference isoform:P9WI55-1 .
?templateMotifSequenceProfileAlignmentOperationP9WI55164 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch165 faldo:location ?targetMotifMatchRegionMatch166 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00209168 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WI55MF_00209159 .
?targetMotifMatchRegionMatch166 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00209167 .
?targetMotifMatchRegionMatchBeginMF_00209167 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00209160 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00209168 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WI55MF_00209157, 1, (STRLEN(?templateMotifCigarP9WI55MF_00209157) - STRLEN(REPLACE(?templateMotifCigarP9WI55MF_00209157, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionP9WI55158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WI55MF_00209159, 1, (STRLEN(?targetMotifMatchCigarP9WI55MF_00209159) - STRLEN(REPLACE(?targetMotifMatchCigarP9WI55MF_00209159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WI55MF_00209159, 1, (STRLEN(?targetMotifMatchCigarP9WI55MF_00209159) - STRLEN(REPLACE(?targetMotifMatchCigarP9WI55MF_00209159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), '')))), '[^-]', ''))) AS ?step2170) .
BIND(((?step2170 + ?targetMotifMatchRegionMatchBeginPositionMF_00209160) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t171) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00209a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch176 faldo:location ?templateMotifSequenceMatchRegionP9WI55177 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WI55179 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WI55MF_00209172 .
?templateMotifSequenceMatchRegionP9WI55177 faldo:begin ?templateMotifSequenceMatchBeginP9WI55178 .
?templateMotifSequenceMatchBeginP9WI55178 faldo:position ?templateMotifSequenceMatchBeginPositionP9WI55173 ;
faldo:reference isoform:P9WI55-1 .
?templateMotifSequenceProfileAlignmentOperationP9WI55179 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch180 faldo:location ?targetMotifMatchRegionMatch181 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00209183 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WI55MF_00209174 .
?targetMotifMatchRegionMatch181 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00209182 .
?targetMotifMatchRegionMatchBeginMF_00209182 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00209175 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00209183 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WI55MF_00209172, 1, (STRLEN(?templateMotifCigarP9WI55MF_00209172) - STRLEN(REPLACE(?templateMotifCigarP9WI55MF_00209172, CONCAT('^(?:-*[^-]){', STR(((126 - ?templateMotifSequenceMatchBeginPositionP9WI55173) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WI55MF_00209174, 1, (STRLEN(?targetMotifMatchCigarP9WI55MF_00209174) - STRLEN(REPLACE(?targetMotifMatchCigarP9WI55MF_00209174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WI55MF_00209174, 1, (STRLEN(?targetMotifMatchCigarP9WI55MF_00209174) - STRLEN(REPLACE(?targetMotifMatchCigarP9WI55MF_00209174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), '')))), '[^-]', ''))) AS ?step2185) .
BIND(((?step2185 + ?targetMotifMatchRegionMatchBeginPositionMF_00209175) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t186) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00209a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch191 faldo:location ?templateMotifSequenceMatchRegionP9WI55192 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WI55194 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WI55MF_00209187 .
?templateMotifSequenceMatchRegionP9WI55192 faldo:begin ?templateMotifSequenceMatchBeginP9WI55193 .
?templateMotifSequenceMatchBeginP9WI55193 faldo:position ?templateMotifSequenceMatchBeginPositionP9WI55188 ;
faldo:reference isoform:P9WI55-1 .
?templateMotifSequenceProfileAlignmentOperationP9WI55194 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch195 faldo:location ?targetMotifMatchRegionMatch196 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00209198 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WI55MF_00209189 .
?targetMotifMatchRegionMatch196 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00209197 .
?targetMotifMatchRegionMatchBeginMF_00209197 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00209190 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00209198 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:201174 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WI55MF_00209187, 1, (STRLEN(?templateMotifCigarP9WI55MF_00209187) - STRLEN(REPLACE(?templateMotifCigarP9WI55MF_00209187, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionP9WI55188) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WI55MF_00209189, 1, (STRLEN(?targetMotifMatchCigarP9WI55MF_00209189) - STRLEN(REPLACE(?targetMotifMatchCigarP9WI55MF_00209189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WI55MF_00209189, 1, (STRLEN(?targetMotifMatchCigarP9WI55MF_00209189) - STRLEN(REPLACE(?targetMotifMatchCigarP9WI55MF_00209189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), '')))), '[^-]', ''))) AS ?step2200) .
BIND(((?step2200 + ?targetMotifMatchRegionMatchBeginPositionMF_00209190) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs2t201) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00209a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch206 faldo:location ?templateMotifSequenceMatchRegionP9WI55207 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WI55209 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WI55MF_00209202 .
?templateMotifSequenceMatchRegionP9WI55207 faldo:begin ?templateMotifSequenceMatchBeginP9WI55208 .
?templateMotifSequenceMatchBeginP9WI55208 faldo:position ?templateMotifSequenceMatchBeginPositionP9WI55203 ;
faldo:reference isoform:P9WI55-1 .
?templateMotifSequenceProfileAlignmentOperationP9WI55209 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch210 faldo:location ?targetMotifMatchRegionMatch211 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00209213 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WI55MF_00209204 .
?targetMotifMatchRegionMatch211 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00209212 .
?targetMotifMatchRegionMatchBeginMF_00209212 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00209205 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00209213 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:201174 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WI55MF_00209202, 1, (STRLEN(?templateMotifCigarP9WI55MF_00209202) - STRLEN(REPLACE(?templateMotifCigarP9WI55MF_00209202, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionP9WI55203) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1214) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WI55MF_00209204, 1, (STRLEN(?targetMotifMatchCigarP9WI55MF_00209204) - STRLEN(REPLACE(?targetMotifMatchCigarP9WI55MF_00209204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WI55MF_00209204, 1, (STRLEN(?targetMotifMatchCigarP9WI55MF_00209204) - STRLEN(REPLACE(?targetMotifMatchCigarP9WI55MF_00209204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), '')))), '[^-]', ''))) AS ?step2215) .
BIND(((?step2215 + ?targetMotifMatchRegionMatchBeginPositionMF_00209205) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs2t216) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00209a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch221 faldo:location ?templateMotifSequenceMatchRegionP9WI55222 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WI55224 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WI55MF_00209217 .
?templateMotifSequenceMatchRegionP9WI55222 faldo:begin ?templateMotifSequenceMatchBeginP9WI55223 .
?templateMotifSequenceMatchBeginP9WI55223 faldo:position ?templateMotifSequenceMatchBeginPositionP9WI55218 ;
faldo:reference isoform:P9WI55-1 .
?templateMotifSequenceProfileAlignmentOperationP9WI55224 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch225 faldo:location ?targetMotifMatchRegionMatch226 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00209228 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WI55MF_00209219 .
?targetMotifMatchRegionMatch226 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00209227 .
?targetMotifMatchRegionMatchBeginMF_00209227 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00209220 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00209228 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:201174 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WI55MF_00209217, 1, (STRLEN(?templateMotifCigarP9WI55MF_00209217) - STRLEN(REPLACE(?templateMotifCigarP9WI55MF_00209217, CONCAT('^(?:-*[^-]){', STR(((52 - ?templateMotifSequenceMatchBeginPositionP9WI55218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1229) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WI55MF_00209219, 1, (STRLEN(?targetMotifMatchCigarP9WI55MF_00209219) - STRLEN(REPLACE(?targetMotifMatchCigarP9WI55MF_00209219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WI55MF_00209219, 1, (STRLEN(?targetMotifMatchCigarP9WI55MF_00209219) - STRLEN(REPLACE(?targetMotifMatchCigarP9WI55MF_00209219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), '')))), '[^-]', ''))) AS ?step2230) .
BIND(((?step2230 + ?targetMotifMatchRegionMatchBeginPositionMF_00209220) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs2t231) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00209a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch236 faldo:location ?templateMotifSequenceMatchRegionP9WI55237 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WI55239 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WI55MF_00209232 .
?templateMotifSequenceMatchRegionP9WI55237 faldo:begin ?templateMotifSequenceMatchBeginP9WI55238 .
?templateMotifSequenceMatchBeginP9WI55238 faldo:position ?templateMotifSequenceMatchBeginPositionP9WI55233 ;
faldo:reference isoform:P9WI55-1 .
?templateMotifSequenceProfileAlignmentOperationP9WI55239 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch240 faldo:location ?targetMotifMatchRegionMatch241 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00209243 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WI55MF_00209234 .
?targetMotifMatchRegionMatch241 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00209242 .
?targetMotifMatchRegionMatchBeginMF_00209242 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00209235 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00209243 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:201174 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WI55MF_00209232, 1, (STRLEN(?templateMotifCigarP9WI55MF_00209232) - STRLEN(REPLACE(?templateMotifCigarP9WI55MF_00209232, CONCAT('^(?:-*[^-]){', STR(((57 - ?templateMotifSequenceMatchBeginPositionP9WI55233) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1244) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WI55MF_00209234, 1, (STRLEN(?targetMotifMatchCigarP9WI55MF_00209234) - STRLEN(REPLACE(?targetMotifMatchCigarP9WI55MF_00209234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1244), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WI55MF_00209234, 1, (STRLEN(?targetMotifMatchCigarP9WI55MF_00209234) - STRLEN(REPLACE(?targetMotifMatchCigarP9WI55MF_00209234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1244), '}'), '')))), '[^-]', ''))) AS ?step2245) .
BIND(((?step2245 + ?targetMotifMatchRegionMatchBeginPositionMF_00209235) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs2t246) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse66) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00209a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch251 faldo:location ?templateMotifSequenceMatchRegionP9WI55252 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WI55254 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WI55MF_00209247 .
?templateMotifSequenceMatchRegionP9WI55252 faldo:begin ?templateMotifSequenceMatchBeginP9WI55253 .
?templateMotifSequenceMatchBeginP9WI55253 faldo:position ?templateMotifSequenceMatchBeginPositionP9WI55248 ;
faldo:reference isoform:P9WI55-1 .
?templateMotifSequenceProfileAlignmentOperationP9WI55254 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch255 faldo:location ?targetMotifMatchRegionMatch256 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00209258 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WI55MF_00209249 .
?targetMotifMatchRegionMatch256 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00209257 .
?targetMotifMatchRegionMatchBeginMF_00209257 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00209250 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00209258 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:201174 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WI55MF_00209247, 1, (STRLEN(?templateMotifCigarP9WI55MF_00209247) - STRLEN(REPLACE(?templateMotifCigarP9WI55MF_00209247, CONCAT('^(?:-*[^-]){', STR(((57 - ?templateMotifSequenceMatchBeginPositionP9WI55248) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1259) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WI55MF_00209249, 1, (STRLEN(?targetMotifMatchCigarP9WI55MF_00209249) - STRLEN(REPLACE(?targetMotifMatchCigarP9WI55MF_00209249, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1259), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WI55MF_00209249, 1, (STRLEN(?targetMotifMatchCigarP9WI55MF_00209249) - STRLEN(REPLACE(?targetMotifMatchCigarP9WI55MF_00209249, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1259), '}'), '')))), '[^-]', ''))) AS ?step2260) .
BIND(((?step2260 + ?targetMotifMatchRegionMatchBeginPositionMF_00209250) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs2t261) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00209a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch266 faldo:location ?templateMotifSequenceMatchRegionP9WI55267 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WI55269 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WI55MF_00209262 .
?templateMotifSequenceMatchRegionP9WI55267 faldo:begin ?templateMotifSequenceMatchBeginP9WI55268 .
?templateMotifSequenceMatchBeginP9WI55268 faldo:position ?templateMotifSequenceMatchBeginPositionP9WI55263 ;
faldo:reference isoform:P9WI55-1 .
?templateMotifSequenceProfileAlignmentOperationP9WI55269 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch270 faldo:location ?targetMotifMatchRegionMatch271 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00209273 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WI55MF_00209264 .
?targetMotifMatchRegionMatch271 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00209272 .
?targetMotifMatchRegionMatchBeginMF_00209272 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00209265 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00209273 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:201174 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WI55MF_00209262, 1, (STRLEN(?templateMotifCigarP9WI55MF_00209262) - STRLEN(REPLACE(?templateMotifCigarP9WI55MF_00209262, CONCAT('^(?:-*[^-]){', STR(((84 - ?templateMotifSequenceMatchBeginPositionP9WI55263) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1274) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WI55MF_00209264, 1, (STRLEN(?targetMotifMatchCigarP9WI55MF_00209264) - STRLEN(REPLACE(?targetMotifMatchCigarP9WI55MF_00209264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1274), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WI55MF_00209264, 1, (STRLEN(?targetMotifMatchCigarP9WI55MF_00209264) - STRLEN(REPLACE(?targetMotifMatchCigarP9WI55MF_00209264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1274), '}'), '')))), '[^-]', ''))) AS ?step2275) .
BIND(((?step2275 + ?targetMotifMatchRegionMatchBeginPositionMF_00209265) - 1) AS ?thisPositionOn82) .
BIND(?thisPositionOn82 AS ?thisPositionOn83) .
BIND(?this AS ?pfs2t276) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse80) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00209a78')) AS ?annotation78) .
BIND(?this AS ?pfs77) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch281 faldo:location ?templateMotifSequenceMatchRegionP9WI55282 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WI55284 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WI55MF_00209277 .
?templateMotifSequenceMatchRegionP9WI55282 faldo:begin ?templateMotifSequenceMatchBeginP9WI55283 .
?templateMotifSequenceMatchBeginP9WI55283 faldo:position ?templateMotifSequenceMatchBeginPositionP9WI55278 ;
faldo:reference isoform:P9WI55-1 .
?templateMotifSequenceProfileAlignmentOperationP9WI55284 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch285 faldo:location ?targetMotifMatchRegionMatch286 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00209288 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WI55MF_00209279 .
?targetMotifMatchRegionMatch286 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00209287 .
?targetMotifMatchRegionMatchBeginMF_00209287 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00209280 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00209288 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:201174 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WI55MF_00209277, 1, (STRLEN(?templateMotifCigarP9WI55MF_00209277) - STRLEN(REPLACE(?templateMotifCigarP9WI55MF_00209277, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionP9WI55278) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1289) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WI55MF_00209279, 1, (STRLEN(?targetMotifMatchCigarP9WI55MF_00209279) - STRLEN(REPLACE(?targetMotifMatchCigarP9WI55MF_00209279, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1289), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WI55MF_00209279, 1, (STRLEN(?targetMotifMatchCigarP9WI55MF_00209279) - STRLEN(REPLACE(?targetMotifMatchCigarP9WI55MF_00209279, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1289), '}'), '')))), '[^-]', ''))) AS ?step2290) .
BIND(((?step2290 + ?targetMotifMatchRegionMatchBeginPositionMF_00209280) - 1) AS ?thisPositionOn89) .
BIND(?thisPositionOn89 AS ?thisPositionOn90) .
BIND(?this AS ?pfs2t291) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse87) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn89, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00209a85')) AS ?annotation85) .
BIND(?this AS ?pfs84) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch296 faldo:location ?templateMotifSequenceMatchRegionP9WI55297 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WI55299 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WI55MF_00209292 .
?templateMotifSequenceMatchRegionP9WI55297 faldo:begin ?templateMotifSequenceMatchBeginP9WI55298 .
?templateMotifSequenceMatchBeginP9WI55298 faldo:position ?templateMotifSequenceMatchBeginPositionP9WI55293 ;
faldo:reference isoform:P9WI55-1 .
?templateMotifSequenceProfileAlignmentOperationP9WI55299 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch300 faldo:location ?targetMotifMatchRegionMatch301 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00209303 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WI55MF_00209294 .
?targetMotifMatchRegionMatch301 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00209302 .
?targetMotifMatchRegionMatchBeginMF_00209302 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00209295 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00209303 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:201174 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WI55MF_00209292, 1, (STRLEN(?templateMotifCigarP9WI55MF_00209292) - STRLEN(REPLACE(?templateMotifCigarP9WI55MF_00209292, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionP9WI55293) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1304) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WI55MF_00209294, 1, (STRLEN(?targetMotifMatchCigarP9WI55MF_00209294) - STRLEN(REPLACE(?targetMotifMatchCigarP9WI55MF_00209294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1304), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WI55MF_00209294, 1, (STRLEN(?targetMotifMatchCigarP9WI55MF_00209294) - STRLEN(REPLACE(?targetMotifMatchCigarP9WI55MF_00209294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1304), '}'), '')))), '[^-]', ''))) AS ?step2305) .
BIND(((?step2305 + ?targetMotifMatchRegionMatchBeginPositionMF_00209295) - 1) AS ?thisPositionOn96) .
BIND(?thisPositionOn96 AS ?thisPositionOn97) .
BIND(?this AS ?pfs2t306) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse94) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn96, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00209a92')) AS ?annotation92) .
BIND(?this AS ?pfs91) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch311 faldo:location ?templateMotifSequenceMatchRegionP0A7A9312 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7A9314 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7A9MF_00209307 .
?templateMotifSequenceMatchRegionP0A7A9312 faldo:begin ?templateMotifSequenceMatchBeginP0A7A9313 .
?templateMotifSequenceMatchBeginP0A7A9313 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7A9308 ;
faldo:reference isoform:P0A7A9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7A9314 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch315 faldo:location ?targetMotifMatchRegionMatch316 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00209318 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7A9MF_00209309 .
?targetMotifMatchRegionMatch316 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00209317 .
?targetMotifMatchRegionMatchBeginMF_00209317 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00209310 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00209318 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:201174 .
})) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7A9MF_00209307, 1, (STRLEN(?templateMotifCigarP0A7A9MF_00209307) - STRLEN(REPLACE(?templateMotifCigarP0A7A9MF_00209307, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionP0A7A9308) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1319) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7A9MF_00209309, 1, (STRLEN(?targetMotifMatchCigarP0A7A9MF_00209309) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7A9MF_00209309, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1319), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7A9MF_00209309, 1, (STRLEN(?targetMotifMatchCigarP0A7A9MF_00209309) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7A9MF_00209309, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1319), '}'), '')))), '[^-]', ''))) AS ?step2320) .
BIND(((?step2320 + ?targetMotifMatchRegionMatchBeginPositionMF_00209310) - 1) AS ?thisPositionOn103) .
BIND(?thisPositionOn103 AS ?thisPositionOn104) .
BIND(?this AS ?pfs3t321) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse101) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn103, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00209a99')) AS ?annotation99) .
BIND(?this AS ?pfs98) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch326 faldo:location ?templateMotifSequenceMatchRegionP0A7A9327 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7A9329 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7A9MF_00209322 .
?templateMotifSequenceMatchRegionP0A7A9327 faldo:begin ?templateMotifSequenceMatchBeginP0A7A9328 .
?templateMotifSequenceMatchBeginP0A7A9328 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7A9323 ;
faldo:reference isoform:P0A7A9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7A9329 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch330 faldo:location ?targetMotifMatchRegionMatch331 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00209333 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7A9MF_00209324 .
?targetMotifMatchRegionMatch331 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00209332 .
?targetMotifMatchRegionMatchBeginMF_00209332 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00209325 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00209333 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:201174 .
})) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7A9MF_00209322, 1, (STRLEN(?templateMotifCigarP0A7A9MF_00209322) - STRLEN(REPLACE(?templateMotifCigarP0A7A9MF_00209322, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionP0A7A9323) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1334) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7A9MF_00209324, 1, (STRLEN(?targetMotifMatchCigarP0A7A9MF_00209324) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7A9MF_00209324, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1334), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7A9MF_00209324, 1, (STRLEN(?targetMotifMatchCigarP0A7A9MF_00209324) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7A9MF_00209324, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1334), '}'), '')))), '[^-]', ''))) AS ?step2335) .
BIND(((?step2335 + ?targetMotifMatchRegionMatchBeginPositionMF_00209325) - 1) AS ?thisPositionOn110) .
BIND(?thisPositionOn110 AS ?thisPositionOn111) .
BIND(?this AS ?pfs3t336) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfsb107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfse108) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn110, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00209a106')) AS ?annotation106) .
BIND(?this AS ?pfs105) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch341 faldo:location ?templateMotifSequenceMatchRegionP0A7A9342 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7A9344 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7A9MF_00209337 .
?templateMotifSequenceMatchRegionP0A7A9342 faldo:begin ?templateMotifSequenceMatchBeginP0A7A9343 .
?templateMotifSequenceMatchBeginP0A7A9343 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7A9338 ;
faldo:reference isoform:P0A7A9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7A9344 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch345 faldo:location ?targetMotifMatchRegionMatch346 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00209348 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7A9MF_00209339 .
?targetMotifMatchRegionMatch346 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00209347 .
?targetMotifMatchRegionMatchBeginMF_00209347 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00209340 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00209348 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:201174 .
})) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7A9MF_00209337, 1, (STRLEN(?templateMotifCigarP0A7A9MF_00209337) - STRLEN(REPLACE(?templateMotifCigarP0A7A9MF_00209337, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionP0A7A9338) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1349) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7A9MF_00209339, 1, (STRLEN(?targetMotifMatchCigarP0A7A9MF_00209339) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7A9MF_00209339, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1349), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7A9MF_00209339, 1, (STRLEN(?targetMotifMatchCigarP0A7A9MF_00209339) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7A9MF_00209339, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1349), '}'), '')))), '[^-]', ''))) AS ?step2350) .
BIND(((?step2350 + ?targetMotifMatchRegionMatchBeginPositionMF_00209340) - 1) AS ?thisPositionOn117) .
BIND(?thisPositionOn117 AS ?thisPositionOn118) .
BIND(?this AS ?pfs3t351) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfsb114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn118))) AS ?pfse115) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn117, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00209a113')) AS ?annotation113) .
BIND(?this AS ?pfs112) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch356 faldo:location ?templateMotifSequenceMatchRegionP0A7A9357 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7A9359 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7A9MF_00209352 .
?templateMotifSequenceMatchRegionP0A7A9357 faldo:begin ?templateMotifSequenceMatchBeginP0A7A9358 .
?templateMotifSequenceMatchBeginP0A7A9358 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7A9353 ;
faldo:reference isoform:P0A7A9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7A9359 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?targetMotifMatch360 faldo:location ?targetMotifMatchRegionMatch361 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00209363 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7A9MF_00209354 .
?targetMotifMatchRegionMatch361 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00209362 .
?targetMotifMatchRegionMatchBeginMF_00209362 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00209355 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00209363 edam:has_input signature:MF_00209 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:201174 .
})) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7A9MF_00209352, 1, (STRLEN(?templateMotifCigarP0A7A9MF_00209352) - STRLEN(REPLACE(?templateMotifCigarP0A7A9MF_00209352, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionP0A7A9353) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1364) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7A9MF_00209354, 1, (STRLEN(?targetMotifMatchCigarP0A7A9MF_00209354) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7A9MF_00209354, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1364), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7A9MF_00209354, 1, (STRLEN(?targetMotifMatchCigarP0A7A9MF_00209354) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7A9MF_00209354, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1364), '}'), '')))), '[^-]', ''))) AS ?step2365) .
BIND(((?step2365 + ?targetMotifMatchRegionMatchBeginPositionMF_00209355) - 1) AS ?thisPositionOn124) .
BIND(?thisPositionOn124 AS ?thisPositionOn125) .
BIND(?this AS ?pfs3t366) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn124))) AS ?pfsb121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn125))) AS ?pfse122) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn124, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00209a120')) AS ?annotation120) .
BIND(?this AS ?pfs119) .
}
}
"xsd:string |
