| http://purl.uniprot.org/unirules/MF_00253#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:106057 up:source unirule:MF_00253 .
_:106058 up:source unirule:MF_00253 .
_:106059 up:source unirule:MF_00253 .
_:106060 up:source unirule:MF_00253 .
_:106061 up:source unirule:MF_00253 .
_:106062 up:source unirule:MF_00253 .
_:106063 up:source unirule:MF_00253 .
_:106064 up:source unirule:MF_00253 .
_:106065 up:source unirule:MF_00253 .
_:106066 up:source unirule:MF_00253 .
_:106067 up:source unirule:MF_00253 .
_:106068 up:source unirule:MF_00253 .
_:106069 up:source unirule:MF_00253 .
_:106070 up:source unirule:MF_00253 .
_:106071 up:source unirule:MF_00253 .
_:106072 up:source unirule:MF_00253 .
_:106073 up:source unirule:MF_00253 .
_:106074 up:source unirule:MF_00253 .
_:106075 up:source unirule:MF_00253 .
_:106076 up:source unirule:MF_00253 .
_:106077 up:source unirule:MF_00253 .
_:106078 up:source unirule:MF_00253 .
_:106079 up:source unirule:MF_00253 .
_:106080 up:source unirule:MF_00253 .
_:106081 up:source unirule:MF_00253 .
_:106082 up:source unirule:MF_00253 .
_:106083 up:source unirule:MF_00253 .
_:106084 up:source unirule:MF_00253 .
_:106085 up:source unirule:MF_00253 .
_:106086 up:source unirule:MF_00253 .
_:106087 up:source unirule:MF_00253 .
_:106088 up:source unirule:MF_00253 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0004820 ,
GO:0005524 ,
GO:0005737 ,
GO:0006426 ,
keyword:30 ,
keyword:436 ,
keyword:547 ,
keyword:648 ,
keyword:67 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.1.1.14' ;
up:fullName 'Glycine--tRNA ligase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Glycyl-tRNA synthetase' ;
up:shortName 'GlyRS' ;
rdf:type up:Structured_Name .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the attachment of glycine to tRNA(Gly).' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class-II aminoacyl-tRNA synthetase family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:30616 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:30616 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:30616 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:30616 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf ?molecule43 .
?molecule43 rdfs:label 'substrate' .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf ?molecule51 .
?molecule51 rdfs:label 'substrate' .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf ?molecule59 .
?molecule59 rdfs:label 'substrate' .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
up:ligand ?ligand66 ;
rdf:type up:Binding_Site_Annotation .
?pfsb64 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?ligand66 rdfs:subClassOf ?molecule67 .
?molecule67 rdfs:label 'substrate' .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
up:ligand ?ligand74 ;
rdf:type up:Binding_Site_Annotation .
?pfsb72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?ligand74 rdfs:subClassOf chebi:30616 .
?pfs77 up:annotation ?annotation78 .
?annotation78 faldo:begin ?pfsb79 ;
faldo:end ?pfse80 ;
up:ligand ?ligand81 ;
rdf:type up:Binding_Site_Annotation .
?pfsb79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfse80 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?ligand81 rdfs:subClassOf chebi:30616 .
?pfs84 up:annotation ?annotation85 .
?annotation85 faldo:begin ?pfsb86 ;
faldo:end ?pfse87 ;
up:ligand ?ligand88 ;
rdf:type up:Binding_Site_Annotation .
?pfsb86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?pfse87 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?ligand88 rdfs:subClassOf chebi:30616 .
?pfs91 up:annotation ?annotation92 .
?annotation92 faldo:begin ?pfsb93 ;
faldo:end ?pfse94 ;
up:ligand ?ligand95 ;
rdf:type up:Binding_Site_Annotation .
?pfsb93 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?pfse94 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?ligand95 rdfs:subClassOf chebi:30616 .
?pfs98 up:annotation ?annotation99 .
?annotation99 faldo:begin ?pfsb100 ;
faldo:end ?pfse101 ;
up:ligand ?ligand102 ;
rdf:type up:Binding_Site_Annotation .
?pfsb100 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
?pfse101 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?ligand102 rdfs:subClassOf ?molecule103 .
?molecule103 rdfs:label 'substrate' .
?pfs106 up:annotation ?annotation107 .
?annotation107 faldo:begin ?pfsb108 ;
faldo:end ?pfse109 ;
up:ligand ?ligand110 ;
rdf:type up:Binding_Site_Annotation .
?pfsb108 faldo:position ?thisPositionOn112 ;
rdf:type faldo:ExactPosition .
?pfse109 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?ligand110 rdfs:subClassOf ?molecule111 .
?molecule111 rdfs:label 'substrate' .
?pfs114 up:annotation ?annotation115 .
?annotation115 faldo:begin ?pfsb116 ;
faldo:end ?pfse117 ;
up:ligand ?ligand118 ;
rdf:type up:Binding_Site_Annotation .
?pfsb116 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?pfse117 faldo:position ?thisPositionOn121 ;
rdf:type faldo:ExactPosition .
?ligand118 rdfs:subClassOf ?molecule119 .
?molecule119 rdfs:label 'substrate' .
?pfs122 up:annotation ?annotation123 .
?annotation123 faldo:begin ?pfsb124 ;
faldo:end ?pfse125 ;
up:ligand ?ligand126 ;
rdf:type up:Binding_Site_Annotation .
?pfsb124 faldo:position ?thisPositionOn128 ;
rdf:type faldo:ExactPosition .
?pfse125 faldo:position ?thisPositionOn129 ;
rdf:type faldo:ExactPosition .
?ligand126 rdfs:subClassOf ?molecule127 .
?molecule127 rdfs:label 'substrate' .
_:106089 a rdf:Statement ;
up:attribution _:106057 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:106090 a rdf:Statement ;
up:attribution _:106058 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:106091 a rdf:Statement ;
up:attribution _:106059 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:106092 a rdf:Statement ;
up:attribution _:106060 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:106093 a rdf:Statement ;
up:attribution _:106061 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:106094 a rdf:Statement ;
up:attribution _:106062 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:106095 a rdf:Statement ;
up:attribution _:106063 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:106096 a rdf:Statement ;
up:attribution _:106064 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:30 .
_:106097 a rdf:Statement ;
up:attribution _:106065 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:106098 a rdf:Statement ;
up:attribution _:106066 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:106099 a rdf:Statement ;
up:attribution _:106067 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:106100 a rdf:Statement ;
up:attribution _:106068 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:106101 a rdf:Statement ;
up:attribution _:106069 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:106102 a rdf:Statement ;
up:attribution _:106070 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004820 .
_:106103 a rdf:Statement ;
up:attribution _:106071 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006426 .
_:106104 a rdf:Statement ;
up:attribution _:106072 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:106105 a rdf:Statement ;
up:source unirule:MF_00253 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:106106 a rdf:Statement ;
up:attribution _:106073 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:106107 a rdf:Statement ;
up:source unirule:MF_00253 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:106108 a rdf:Statement ;
up:attribution _:106074 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:106109 a rdf:Statement ;
up:source unirule:MF_00253 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:106110 a rdf:Statement ;
up:attribution _:106075 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:106111 a rdf:Statement ;
up:source unirule:MF_00253 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:106112 a rdf:Statement ;
up:attribution _:106076 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:106113 a rdf:Statement ;
up:source unirule:MF_00253 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:106114 a rdf:Statement ;
up:attribution _:106077 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:106115 a rdf:Statement ;
up:source unirule:MF_00253 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:106116 a rdf:Statement ;
up:attribution _:106078 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:106117 a rdf:Statement ;
up:source unirule:MF_00253 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:106118 a rdf:Statement ;
up:attribution _:106079 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:106119 a rdf:Statement ;
up:source unirule:MF_00253 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:106120 a rdf:Statement ;
up:attribution _:106080 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:106121 a rdf:Statement ;
up:source unirule:MF_00253 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:106122 a rdf:Statement ;
up:attribution _:106081 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:106123 a rdf:Statement ;
up:source unirule:MF_00253 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:106124 a rdf:Statement ;
up:attribution _:106082 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:106125 a rdf:Statement ;
up:source unirule:MF_00253 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:106126 a rdf:Statement ;
up:attribution _:106083 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:106127 a rdf:Statement ;
up:source unirule:MF_00253 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:106128 a rdf:Statement ;
up:attribution _:106084 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:106129 a rdf:Statement ;
up:source unirule:MF_00253 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:106130 a rdf:Statement ;
up:attribution _:106085 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:106131 a rdf:Statement ;
up:source unirule:MF_00253 ;
rdf:subject ?pfs106 ;
rdf:predicate up:annotation ;
rdf:object ?annotation107 .
_:106132 a rdf:Statement ;
up:attribution _:106086 ;
rdf:subject ?pfs106 ;
rdf:predicate up:annotation ;
rdf:object ?annotation107 .
_:106133 a rdf:Statement ;
up:source unirule:MF_00253 ;
rdf:subject ?pfs114 ;
rdf:predicate up:annotation ;
rdf:object ?annotation115 .
_:106134 a rdf:Statement ;
up:attribution _:106087 ;
rdf:subject ?pfs114 ;
rdf:predicate up:annotation ;
rdf:object ?annotation115 .
_:106135 a rdf:Statement ;
up:source unirule:MF_00253 ;
rdf:subject ?pfs122 ;
rdf:predicate up:annotation ;
rdf:object ?annotation123 .
_:106136 a rdf:Statement ;
up:attribution _:106088 ;
rdf:subject ?pfs122 ;
rdf:predicate up:annotation ;
rdf:object ?annotation123 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00253
#Rule MF_00253 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00253_B .
?thisOrganism rdfs:subClassOf+ taxon:2 .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00253_A .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
}
BIND(URI(CONCAT(STR(?this), '#MF_00253a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00253a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00253a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00253a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00253a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00253a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionQ57681135 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57681137 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57681MF_00253_A130 .
?templateMotifSequenceMatchRegionQ57681135 faldo:begin ?templateMotifSequenceMatchBeginQ57681136 .
?templateMotifSequenceMatchBeginQ57681136 faldo:position ?templateMotifSequenceMatchBeginPositionQ57681131 ;
faldo:reference isoform:Q57681-1 .
?templateMotifSequenceProfileAlignmentOperationQ57681137 edam:has_input signature:MF_00253_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_A141 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57681MF_00253_A132 .
?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_A140 .
?targetMotifMatchRegionMatchBeginMF_00253_A140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_A133 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00253_A141 edam:has_input signature:MF_00253_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A130, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A130) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A130, CONCAT('^(?:-*[^-]){', STR(((196 - ?templateMotifSequenceMatchBeginPositionQ57681131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A132, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A132) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A132, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A132) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) .
BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A133) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A130, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A130) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A130, CONCAT('^(?:-*[^-]){', STR(((198 - ?templateMotifSequenceMatchBeginPositionQ57681131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A132, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A132) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A132, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A132) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A133) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t146) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)) = 'RNE')) .
BIND(URI(CONCAT(STR(?this), '#MF_00253a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch151 faldo:location ?templateMotifSequenceMatchRegionQ57681152 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57681154 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57681MF_00253_A147 .
?templateMotifSequenceMatchRegionQ57681152 faldo:begin ?templateMotifSequenceMatchBeginQ57681153 .
?templateMotifSequenceMatchBeginQ57681153 faldo:position ?templateMotifSequenceMatchBeginPositionQ57681148 ;
faldo:reference isoform:Q57681-1 .
?templateMotifSequenceProfileAlignmentOperationQ57681154 edam:has_input signature:MF_00253_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch155 faldo:location ?targetMotifMatchRegionMatch156 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_A158 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57681MF_00253_A149 .
?targetMotifMatchRegionMatch156 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_A157 .
?targetMotifMatchRegionMatchBeginMF_00253_A157 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_A150 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00253_A158 edam:has_input signature:MF_00253_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A147, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A147) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A147, CONCAT('^(?:-*[^-]){', STR(((206 - ?templateMotifSequenceMatchBeginPositionQ57681148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A149, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A149) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A149, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A149) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) .
BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A150) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A147, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A147) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A147, CONCAT('^(?:-*[^-]){', STR(((211 - ?templateMotifSequenceMatchBeginPositionQ57681148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A149, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A149) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A149, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A149) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) .
BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A150) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t163) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER (REGEX('[FILV]R[ARNDCQEGHILKMFPSTWYVBZJUOX]{3)F', SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00253a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionQ57681169 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57681171 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57681MF_00253_A164 .
?templateMotifSequenceMatchRegionQ57681169 faldo:begin ?templateMotifSequenceMatchBeginQ57681170 .
?templateMotifSequenceMatchBeginQ57681170 faldo:position ?templateMotifSequenceMatchBeginPositionQ57681165 ;
faldo:reference isoform:Q57681-1 .
?templateMotifSequenceProfileAlignmentOperationQ57681171 edam:has_input signature:MF_00253_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_A175 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57681MF_00253_A166 .
?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_A174 .
?targetMotifMatchRegionMatchBeginMF_00253_A174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_A167 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00253_A175 edam:has_input signature:MF_00253_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A164, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A164) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A164, CONCAT('^(?:-*[^-]){', STR(((328 - ?templateMotifSequenceMatchBeginPositionQ57681165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A166, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A166) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A166, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A166) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) .
BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A167) - 1) AS ?thisPositionOn29) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A164, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A164) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A164, CONCAT('^(?:-*[^-]){', STR(((329 - ?templateMotifSequenceMatchBeginPositionQ57681165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A166, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A166) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A166, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A166) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) .
BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A167) - 1) AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t180) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER (REGEX('E[CILV]', SUBSTR(?thisSequenceValue, ?thisPositionOn29, (?thisPositionOn30 - ?thisPositionOn29)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00253a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch185 faldo:location ?templateMotifSequenceMatchRegionQ57681186 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57681188 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57681MF_00253_A181 .
?templateMotifSequenceMatchRegionQ57681186 faldo:begin ?templateMotifSequenceMatchBeginQ57681187 .
?templateMotifSequenceMatchBeginQ57681187 faldo:position ?templateMotifSequenceMatchBeginPositionQ57681182 ;
faldo:reference isoform:Q57681-1 .
?templateMotifSequenceProfileAlignmentOperationQ57681188 edam:has_input signature:MF_00253_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch189 faldo:location ?targetMotifMatchRegionMatch190 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_A192 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57681MF_00253_A183 .
?targetMotifMatchRegionMatch190 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_A191 .
?targetMotifMatchRegionMatchBeginMF_00253_A191 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_A184 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00253_A192 edam:has_input signature:MF_00253_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A181, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A181) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A181, CONCAT('^(?:-*[^-]){', STR(((451 - ?templateMotifSequenceMatchBeginPositionQ57681182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A183, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A183) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A183, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A183) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), '')))), '[^-]', ''))) AS ?step2194) .
BIND(((?step2194 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A184) - 1) AS ?thisPositionOn36) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A181, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A181) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A181, CONCAT('^(?:-*[^-]){', STR(((454 - ?templateMotifSequenceMatchBeginPositionQ57681182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A183, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A183) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A183, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A183) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) .
BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A184) - 1) AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t197) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)R', SUBSTR(?thisSequenceValue, ?thisPositionOn36, (?thisPositionOn37 - ?thisPositionOn36)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00253a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionQ57681203 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57681205 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57681MF_00253_A198 .
?templateMotifSequenceMatchRegionQ57681203 faldo:begin ?templateMotifSequenceMatchBeginQ57681204 .
?templateMotifSequenceMatchBeginQ57681204 faldo:position ?templateMotifSequenceMatchBeginPositionQ57681199 ;
faldo:reference isoform:Q57681-1 .
?templateMotifSequenceProfileAlignmentOperationQ57681205 edam:has_input signature:MF_00253_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_A209 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57681MF_00253_A200 .
?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_A208 .
?targetMotifMatchRegionMatchBeginMF_00253_A208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_A201 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00253_A209 edam:has_input signature:MF_00253_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A198, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A198) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A198, CONCAT('^(?:-*[^-]){', STR(((211 - ?templateMotifSequenceMatchBeginPositionQ57681199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A200, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A200) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A200, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A200) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) .
BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A201) - 1) AS ?thisPositionOn44) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A198, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A198) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A198, CONCAT('^(?:-*[^-]){', STR(((215 - ?templateMotifSequenceMatchBeginPositionQ57681199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1212) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A200, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A200) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A200, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A200) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), '')))), '[^-]', ''))) AS ?step2213) .
BIND(((?step2213 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A201) - 1) AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t214) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse41) .
FILTER (REGEX('F[ARNDCQEGHILKMFPSTWYVBZJUOX]{3)E', SUBSTR(?thisSequenceValue, ?thisPositionOn44, (?thisPositionOn45 - ?thisPositionOn44)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00253a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch219 faldo:location ?templateMotifSequenceMatchRegionQ57681220 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57681222 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57681MF_00253_A215 .
?templateMotifSequenceMatchRegionQ57681220 faldo:begin ?templateMotifSequenceMatchBeginQ57681221 .
?templateMotifSequenceMatchBeginQ57681221 faldo:position ?templateMotifSequenceMatchBeginPositionQ57681216 ;
faldo:reference isoform:Q57681-1 .
?templateMotifSequenceProfileAlignmentOperationQ57681222 edam:has_input signature:MF_00253_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch223 faldo:location ?targetMotifMatchRegionMatch224 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_A226 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57681MF_00253_A217 .
?targetMotifMatchRegionMatch224 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_A225 .
?targetMotifMatchRegionMatchBeginMF_00253_A225 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_A218 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00253_A226 edam:has_input signature:MF_00253_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A215, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A215) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A215, CONCAT('^(?:-*[^-]){', STR(((447 - ?templateMotifSequenceMatchBeginPositionQ57681216) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1227) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A217, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A217) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A217, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A217) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), '')))), '[^-]', ''))) AS ?step2228) .
BIND(((?step2228 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A218) - 1) AS ?thisPositionOn52) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A215, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A215) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A215, CONCAT('^(?:-*[^-]){', STR(((451 - ?templateMotifSequenceMatchBeginPositionQ57681216) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1229) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A217, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A217) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A217, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A217) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), '')))), '[^-]', ''))) AS ?step2230) .
BIND(((?step2230 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A218) - 1) AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t231) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse49) .
FILTER (REGEX('E[ARNDCQEGHILKMFPSTWYVBZJUOX]{3)G', SUBSTR(?thisSequenceValue, ?thisPositionOn52, (?thisPositionOn53 - ?thisPositionOn52)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00253a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch236 faldo:location ?templateMotifSequenceMatchRegionQ57681237 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57681239 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57681MF_00253_A232 .
?templateMotifSequenceMatchRegionQ57681237 faldo:begin ?templateMotifSequenceMatchBeginQ57681238 .
?templateMotifSequenceMatchBeginQ57681238 faldo:position ?templateMotifSequenceMatchBeginPositionQ57681233 ;
faldo:reference isoform:Q57681-1 .
?templateMotifSequenceProfileAlignmentOperationQ57681239 edam:has_input signature:MF_00253_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch240 faldo:location ?targetMotifMatchRegionMatch241 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_A243 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57681MF_00253_A234 .
?targetMotifMatchRegionMatch241 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_A242 .
?targetMotifMatchRegionMatchBeginMF_00253_A242 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_A235 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00253_A243 edam:has_input signature:MF_00253_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A232, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A232) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A232, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionQ57681233) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1244) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A234, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A234) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1244), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A234, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A234) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1244), '}'), '')))), '[^-]', ''))) AS ?step2245) .
BIND(((?step2245 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A235) - 1) AS ?thisPositionOn60) .
BIND(?thisPositionOn60 AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t246) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00253a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch251 faldo:location ?templateMotifSequenceMatchRegionQ57681252 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57681254 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57681MF_00253_A247 .
?templateMotifSequenceMatchRegionQ57681252 faldo:begin ?templateMotifSequenceMatchBeginQ57681253 .
?templateMotifSequenceMatchBeginQ57681253 faldo:position ?templateMotifSequenceMatchBeginPositionQ57681248 ;
faldo:reference isoform:Q57681-1 .
?templateMotifSequenceProfileAlignmentOperationQ57681254 edam:has_input signature:MF_00253_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch255 faldo:location ?targetMotifMatchRegionMatch256 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_A258 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57681MF_00253_A249 .
?targetMotifMatchRegionMatch256 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_A257 .
?targetMotifMatchRegionMatchBeginMF_00253_A257 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_A250 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00253_A258 edam:has_input signature:MF_00253_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57681MF_00253_A247, 1, (STRLEN(?templateMotifCigarQ57681MF_00253_A247) - STRLEN(REPLACE(?templateMotifCigarQ57681MF_00253_A247, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionQ57681248) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1259) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A249, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A249) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A249, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1259), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57681MF_00253_A249, 1, (STRLEN(?targetMotifMatchCigarQ57681MF_00253_A249) - STRLEN(REPLACE(?targetMotifMatchCigarQ57681MF_00253_A249, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1259), '}'), '')))), '[^-]', ''))) AS ?step2260) .
BIND(((?step2260 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_A250) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs1t261) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00253a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch266 faldo:location ?templateMotifSequenceMatchRegionP56206267 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56206269 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP56206MF_00253_B262 .
?templateMotifSequenceMatchRegionP56206267 faldo:begin ?templateMotifSequenceMatchBeginP56206268 .
?templateMotifSequenceMatchBeginP56206268 faldo:position ?templateMotifSequenceMatchBeginPositionP56206263 ;
faldo:reference isoform:P56206-1 .
?templateMotifSequenceProfileAlignmentOperationP56206269 edam:has_input signature:MF_00253_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch270 faldo:location ?targetMotifMatchRegionMatch271 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_B273 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP56206MF_00253_B264 .
?targetMotifMatchRegionMatch271 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_B272 .
?targetMotifMatchRegionMatchBeginMF_00253_B272 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_B265 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00253_B273 edam:has_input signature:MF_00253_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B262, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B262) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B262, CONCAT('^(?:-*[^-]){', STR(((221 - ?templateMotifSequenceMatchBeginPositionP56206263) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1274) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B264, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B264) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1274), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B264, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B264) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1274), '}'), '')))), '[^-]', ''))) AS ?step2275) .
BIND(((?step2275 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B265) - 1) AS ?thisPositionOn75) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B262, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B262) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B262, CONCAT('^(?:-*[^-]){', STR(((223 - ?templateMotifSequenceMatchBeginPositionP56206263) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1276) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B264, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B264) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B264, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B264) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), '')))), '[^-]', ''))) AS ?step2277) .
BIND(((?step2277 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B265) - 1) AS ?thisPositionOn76) .
BIND(?this AS ?pfs2t278) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, (?thisPositionOn76 - ?thisPositionOn75)) = 'RNE')) .
BIND(URI(CONCAT(STR(?this), '#MF_00253a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch283 faldo:location ?templateMotifSequenceMatchRegionP56206284 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56206286 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP56206MF_00253_B279 .
?templateMotifSequenceMatchRegionP56206284 faldo:begin ?templateMotifSequenceMatchBeginP56206285 .
?templateMotifSequenceMatchBeginP56206285 faldo:position ?templateMotifSequenceMatchBeginPositionP56206280 ;
faldo:reference isoform:P56206-1 .
?templateMotifSequenceProfileAlignmentOperationP56206286 edam:has_input signature:MF_00253_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch287 faldo:location ?targetMotifMatchRegionMatch288 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_B290 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP56206MF_00253_B281 .
?targetMotifMatchRegionMatch288 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_B289 .
?targetMotifMatchRegionMatchBeginMF_00253_B289 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_B282 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00253_B290 edam:has_input signature:MF_00253_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B279, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B279) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B279, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionP56206280) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1291) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B281, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B281) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1291), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B281, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B281) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1291), '}'), '')))), '[^-]', ''))) AS ?step2292) .
BIND(((?step2292 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B282) - 1) AS ?thisPositionOn82) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B279, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B279) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B279, CONCAT('^(?:-*[^-]){', STR(((236 - ?templateMotifSequenceMatchBeginPositionP56206280) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1293) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B281, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B281) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1293), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B281, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B281) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1293), '}'), '')))), '[^-]', ''))) AS ?step2294) .
BIND(((?step2294 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B282) - 1) AS ?thisPositionOn83) .
BIND(?this AS ?pfs2t295) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse80) .
FILTER (REGEX('[FILV]R[ARNDCQEGHILKMFPSTWYVBZJUOX]{3)[FL]', SUBSTR(?thisSequenceValue, ?thisPositionOn82, (?thisPositionOn83 - ?thisPositionOn82)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00253a78')) AS ?annotation78) .
BIND(?this AS ?pfs77) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch300 faldo:location ?templateMotifSequenceMatchRegionP56206301 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56206303 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP56206MF_00253_B296 .
?templateMotifSequenceMatchRegionP56206301 faldo:begin ?templateMotifSequenceMatchBeginP56206302 .
?templateMotifSequenceMatchBeginP56206302 faldo:position ?templateMotifSequenceMatchBeginPositionP56206297 ;
faldo:reference isoform:P56206-1 .
?templateMotifSequenceProfileAlignmentOperationP56206303 edam:has_input signature:MF_00253_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch304 faldo:location ?targetMotifMatchRegionMatch305 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_B307 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP56206MF_00253_B298 .
?targetMotifMatchRegionMatch305 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_B306 .
?targetMotifMatchRegionMatchBeginMF_00253_B306 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_B299 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00253_B307 edam:has_input signature:MF_00253_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B296, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B296) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B296, CONCAT('^(?:-*[^-]){', STR(((305 - ?templateMotifSequenceMatchBeginPositionP56206297) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1308) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B298, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B298) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1308), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B298, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B298) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1308), '}'), '')))), '[^-]', ''))) AS ?step2309) .
BIND(((?step2309 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B299) - 1) AS ?thisPositionOn89) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B296, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B296) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B296, CONCAT('^(?:-*[^-]){', STR(((306 - ?templateMotifSequenceMatchBeginPositionP56206297) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1310) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B298, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B298) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B298, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B298) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), '')))), '[^-]', ''))) AS ?step2311) .
BIND(((?step2311 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B299) - 1) AS ?thisPositionOn90) .
BIND(?this AS ?pfs2t312) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse87) .
FILTER (REGEX('E[CILV]', SUBSTR(?thisSequenceValue, ?thisPositionOn89, (?thisPositionOn90 - ?thisPositionOn89)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00253a85')) AS ?annotation85) .
BIND(?this AS ?pfs84) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch317 faldo:location ?templateMotifSequenceMatchRegionP56206318 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56206320 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP56206MF_00253_B313 .
?templateMotifSequenceMatchRegionP56206318 faldo:begin ?templateMotifSequenceMatchBeginP56206319 .
?templateMotifSequenceMatchBeginP56206319 faldo:position ?templateMotifSequenceMatchBeginPositionP56206314 ;
faldo:reference isoform:P56206-1 .
?templateMotifSequenceProfileAlignmentOperationP56206320 edam:has_input signature:MF_00253_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch321 faldo:location ?targetMotifMatchRegionMatch322 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_B324 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP56206MF_00253_B315 .
?targetMotifMatchRegionMatch322 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_B323 .
?targetMotifMatchRegionMatchBeginMF_00253_B323 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_B316 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00253_B324 edam:has_input signature:MF_00253_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B313, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B313) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B313, CONCAT('^(?:-*[^-]){', STR(((364 - ?templateMotifSequenceMatchBeginPositionP56206314) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1325) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B315, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B315) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1325), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B315, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B315) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1325), '}'), '')))), '[^-]', ''))) AS ?step2326) .
BIND(((?step2326 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B316) - 1) AS ?thisPositionOn96) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B313, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B313) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B313, CONCAT('^(?:-*[^-]){', STR(((367 - ?templateMotifSequenceMatchBeginPositionP56206314) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1327) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B315, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B315) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B315, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B315) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B315, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), '')))), '[^-]', ''))) AS ?step2328) .
BIND(((?step2328 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B316) - 1) AS ?thisPositionOn97) .
BIND(?this AS ?pfs2t329) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse94) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)R', SUBSTR(?thisSequenceValue, ?thisPositionOn96, (?thisPositionOn97 - ?thisPositionOn96)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00253a92')) AS ?annotation92) .
BIND(?this AS ?pfs91) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch334 faldo:location ?templateMotifSequenceMatchRegionP56206335 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56206337 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP56206MF_00253_B330 .
?templateMotifSequenceMatchRegionP56206335 faldo:begin ?templateMotifSequenceMatchBeginP56206336 .
?templateMotifSequenceMatchBeginP56206336 faldo:position ?templateMotifSequenceMatchBeginPositionP56206331 ;
faldo:reference isoform:P56206-1 .
?templateMotifSequenceProfileAlignmentOperationP56206337 edam:has_input signature:MF_00253_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch338 faldo:location ?targetMotifMatchRegionMatch339 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_B341 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP56206MF_00253_B332 .
?targetMotifMatchRegionMatch339 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_B340 .
?targetMotifMatchRegionMatchBeginMF_00253_B340 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_B333 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00253_B341 edam:has_input signature:MF_00253_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B330, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B330) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B330, CONCAT('^(?:-*[^-]){', STR(((236 - ?templateMotifSequenceMatchBeginPositionP56206331) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1342) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B332, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B332) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B332, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B332) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), '')))), '[^-]', ''))) AS ?step2343) .
BIND(((?step2343 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B333) - 1) AS ?thisPositionOn104) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B330, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B330) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B330, CONCAT('^(?:-*[^-]){', STR(((240 - ?templateMotifSequenceMatchBeginPositionP56206331) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1344) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B332, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B332) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1344), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B332, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B332) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1344), '}'), '')))), '[^-]', ''))) AS ?step2345) .
BIND(((?step2345 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B333) - 1) AS ?thisPositionOn105) .
BIND(?this AS ?pfs2t346) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfsb100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfse101) .
FILTER (REGEX('[FL][ARNDCQEGHILKMFPSTWYVBZJUOX]Q[ARNDCQEGHILKMFPSTWYVBZJUOX]E', SUBSTR(?thisSequenceValue, ?thisPositionOn104, (?thisPositionOn105 - ?thisPositionOn104)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00253a99')) AS ?annotation99) .
BIND(?this AS ?pfs98) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch351 faldo:location ?templateMotifSequenceMatchRegionP56206352 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56206354 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP56206MF_00253_B347 .
?templateMotifSequenceMatchRegionP56206352 faldo:begin ?templateMotifSequenceMatchBeginP56206353 .
?templateMotifSequenceMatchBeginP56206353 faldo:position ?templateMotifSequenceMatchBeginPositionP56206348 ;
faldo:reference isoform:P56206-1 .
?templateMotifSequenceProfileAlignmentOperationP56206354 edam:has_input signature:MF_00253_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch355 faldo:location ?targetMotifMatchRegionMatch356 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_B358 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP56206MF_00253_B349 .
?targetMotifMatchRegionMatch356 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_B357 .
?targetMotifMatchRegionMatchBeginMF_00253_B357 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_B350 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00253_B358 edam:has_input signature:MF_00253_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B347, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B347) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B347, CONCAT('^(?:-*[^-]){', STR(((360 - ?templateMotifSequenceMatchBeginPositionP56206348) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1359) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B349, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B349) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1359), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B349, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B349) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1359), '}'), '')))), '[^-]', ''))) AS ?step2360) .
BIND(((?step2360 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B350) - 1) AS ?thisPositionOn112) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B347, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B347) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B347, CONCAT('^(?:-*[^-]){', STR(((364 - ?templateMotifSequenceMatchBeginPositionP56206348) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1361) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B349, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B349) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1361), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B349, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B349) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1361), '}'), '')))), '[^-]', ''))) AS ?step2362) .
BIND(((?step2362 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B350) - 1) AS ?thisPositionOn113) .
BIND(?this AS ?pfs2t363) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfsb108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfse109) .
FILTER (REGEX('E[ARNDCQEGHILKMFPSTWYVBZJUOX]{3)G', SUBSTR(?thisSequenceValue, ?thisPositionOn112, (?thisPositionOn113 - ?thisPositionOn112)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00253a107')) AS ?annotation107) .
BIND(?this AS ?pfs106) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch368 faldo:location ?templateMotifSequenceMatchRegionP56206369 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56206371 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP56206MF_00253_B364 .
?templateMotifSequenceMatchRegionP56206369 faldo:begin ?templateMotifSequenceMatchBeginP56206370 .
?templateMotifSequenceMatchBeginP56206370 faldo:position ?templateMotifSequenceMatchBeginPositionP56206365 ;
faldo:reference isoform:P56206-1 .
?templateMotifSequenceProfileAlignmentOperationP56206371 edam:has_input signature:MF_00253_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch372 faldo:location ?targetMotifMatchRegionMatch373 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_B375 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP56206MF_00253_B366 .
?targetMotifMatchRegionMatch373 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_B374 .
?targetMotifMatchRegionMatchBeginMF_00253_B374 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_B367 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00253_B375 edam:has_input signature:MF_00253_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B364, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B364) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B364, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionP56206365) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1376) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B366, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B366) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B366, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1376), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B366, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B366) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B366, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1376), '}'), '')))), '[^-]', ''))) AS ?step2377) .
BIND(((?step2377 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B367) - 1) AS ?thisPositionOn120) .
BIND(?thisPositionOn120 AS ?thisPositionOn121) .
BIND(?this AS ?pfs2t378) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfsb116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfse117) .
FILTER (REGEX('[KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn120, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00253a115')) AS ?annotation115) .
BIND(?this AS ?pfs114) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch383 faldo:location ?templateMotifSequenceMatchRegionP56206384 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP56206386 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP56206MF_00253_B379 .
?templateMotifSequenceMatchRegionP56206384 faldo:begin ?templateMotifSequenceMatchBeginP56206385 .
?templateMotifSequenceMatchBeginP56206385 faldo:position ?templateMotifSequenceMatchBeginPositionP56206380 ;
faldo:reference isoform:P56206-1 .
?templateMotifSequenceProfileAlignmentOperationP56206386 edam:has_input signature:MF_00253_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch387 faldo:location ?targetMotifMatchRegionMatch388 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00253_B390 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP56206MF_00253_B381 .
?targetMotifMatchRegionMatch388 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00253_B389 .
?targetMotifMatchRegionMatchBeginMF_00253_B389 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00253_B382 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00253_B390 edam:has_input signature:MF_00253_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP56206MF_00253_B379, 1, (STRLEN(?templateMotifCigarP56206MF_00253_B379) - STRLEN(REPLACE(?templateMotifCigarP56206MF_00253_B379, CONCAT('^(?:-*[^-]){', STR(((189 - ?templateMotifSequenceMatchBeginPositionP56206380) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1391) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B381, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B381) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B381, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1391), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP56206MF_00253_B381, 1, (STRLEN(?targetMotifMatchCigarP56206MF_00253_B381) - STRLEN(REPLACE(?targetMotifMatchCigarP56206MF_00253_B381, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1391), '}'), '')))), '[^-]', ''))) AS ?step2392) .
BIND(((?step2392 + ?targetMotifMatchRegionMatchBeginPositionMF_00253_B382) - 1) AS ?thisPositionOn128) .
BIND(?thisPositionOn128 AS ?thisPositionOn129) .
BIND(?this AS ?pfs2t393) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfsb124) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn129))) AS ?pfse125) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn128, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00253a123')) AS ?annotation123) .
BIND(?this AS ?pfs122) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(?this AS ?case9) .
}
}
"xsd:string |
