| http://purl.uniprot.org/unirules/MF_00372#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:148138 up:source unirule:MF_00372 .
_:148139 up:source unirule:MF_00372 .
_:148140 up:source unirule:MF_00372 .
_:148141 up:source unirule:MF_00372 .
_:148142 up:source unirule:MF_00372 .
_:148143 up:source unirule:MF_00372 .
_:148144 up:source unirule:MF_00372 .
_:148145 up:source unirule:MF_00372 .
_:148146 up:source unirule:MF_00372 .
_:148147 up:source unirule:MF_00372 .
_:148148 up:source unirule:MF_00372 .
_:148149 up:source unirule:MF_00372 .
_:148150 up:source unirule:MF_00372 .
_:148151 up:source unirule:MF_00372 .
_:148152 up:source unirule:MF_00372 .
_:148153 up:source unirule:MF_00372 .
_:148154 up:source unirule:MF_00372 .
_:148155 up:source unirule:MF_00372 .
_:148156 up:source unirule:MF_00372 .
_:148157 up:source unirule:MF_00372 .
_:148158 up:source unirule:MF_00372 .
_:148159 up:source unirule:MF_00372 .
_:148160 up:source unirule:MF_00372 .
_:148161 up:source unirule:MF_00372 .
_:148162 up:source unirule:MF_00372 .
_:148163 up:source unirule:MF_00372 .
_:148164 up:source unirule:MF_00372 .
_:148165 up:source unirule:MF_00372 .
_:148166 up:source unirule:MF_00372 .
_:148167 up:source unirule:MF_00372 .
_:148168 up:source unirule:MF_00372 .
_:148169 up:source unirule:MF_00372 .
_:148170 up:source unirule:MF_00372 .
_:148171 up:source unirule:MF_00372 .
_:148172 up:source unirule:MF_00372 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0005737 ,
GO:0006548 ,
GO:0050480 ,
keyword:369 ,
keyword:378 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.2.7' ;
up:fullName 'Imidazolonepropionase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Imidazolone-5-propionate hydrolase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'hutI' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the hydrolytic cleavage of the carbon-nitrogen bond in imidazolone-5-propanoate to yield N-formimidoyl-L-glutamate. It is the third step in the universal histidine degradation pathway.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid degradation; L-histidine degradation into L-glutamate; N-formimidoyl-L-glutamate from L-histidine: step 3/3.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the metallo-dependent hydrolases superfamily. HutI family.' .
?case10 up:classifiedWith GO:0005506 ,
GO:0008270 ,
keyword:408 ,
keyword:479 ,
keyword:862 .
?pfs11 up:annotation ?annotation12 ,
?annotation18 ,
?annotation24 ,
?annotation30 ,
?annotation36 ,
?annotation42 ,
?annotation48 ,
?annotation54 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:29034 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:29105 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:29034 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:29105 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:29034 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf chebi:29105 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:29034 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf chebi:29105 .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf chebi:77893 .
?pfs67 up:annotation ?annotation68 .
?annotation68 faldo:begin ?pfsb69 ;
faldo:end ?pfse70 ;
up:ligand ?ligand71 ;
rdf:type up:Binding_Site_Annotation .
?pfsb69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?ligand71 rdfs:subClassOf chebi:77893 .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
up:ligand ?ligand78 ;
rdf:type up:Binding_Site_Annotation .
?pfsb76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?ligand78 rdfs:subClassOf chebi:58928 .
?pfs81 up:annotation ?annotation82 .
?annotation82 faldo:begin ?pfsb83 ;
faldo:end ?pfse84 ;
up:ligand ?ligand85 ;
rdf:type up:Binding_Site_Annotation .
?pfsb83 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfse84 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?ligand85 rdfs:subClassOf chebi:77893 .
?pfs88 up:annotation ?annotation89 .
?annotation89 faldo:begin ?pfsb90 ;
faldo:end ?pfse91 ;
up:ligand ?ligand92 ;
rdf:type up:Binding_Site_Annotation .
?pfsb90 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?pfse91 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?ligand92 rdfs:subClassOf chebi:77893 .
?pfs95 up:annotation ?annotation96 .
?annotation96 faldo:begin ?pfsb97 ;
faldo:end ?pfse98 ;
up:ligand ?ligand99 ;
rdf:type up:Binding_Site_Annotation .
?pfsb97 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?pfse98 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?ligand99 rdfs:subClassOf chebi:58928 .
?pfs102 up:annotation ?annotation103 .
?annotation103 faldo:begin ?pfsb104 ;
faldo:end ?pfse105 ;
up:ligand ?ligand106 ;
rdf:type up:Binding_Site_Annotation .
?pfsb104 faldo:position ?thisPositionOn107 ;
rdf:type faldo:ExactPosition .
?pfse105 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?ligand106 rdfs:subClassOf chebi:58928 .
?pfs109 up:annotation ?annotation110 .
?annotation110 faldo:begin ?pfsb111 ;
faldo:end ?pfse112 ;
up:ligand ?ligand113 ;
rdf:type up:Binding_Site_Annotation .
?pfsb111 faldo:position ?thisPositionOn114 ;
rdf:type faldo:ExactPosition .
?pfse112 faldo:position ?thisPositionOn115 ;
rdf:type faldo:ExactPosition .
?ligand113 rdfs:subClassOf chebi:77893 .
_:148173 a rdf:Statement ;
up:attribution _:148138 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:148174 a rdf:Statement ;
up:attribution _:148139 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:148175 a rdf:Statement ;
up:attribution _:148140 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:148176 a rdf:Statement ;
up:attribution _:148141 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:148177 a rdf:Statement ;
up:attribution _:148142 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:148178 a rdf:Statement ;
up:attribution _:148143 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:148179 a rdf:Statement ;
up:attribution _:148144 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:148180 a rdf:Statement ;
up:attribution _:148145 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:148181 a rdf:Statement ;
up:attribution _:148146 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:148182 a rdf:Statement ;
up:attribution _:148147 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:148183 a rdf:Statement ;
up:attribution _:148148 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:369 .
_:148184 a rdf:Statement ;
up:attribution _:148149 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050480 .
_:148185 a rdf:Statement ;
up:attribution _:148150 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006548 .
_:148186 a rdf:Statement ;
up:attribution _:148151 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:148187 a rdf:Statement ;
up:attribution _:148152 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:148188 a rdf:Statement ;
up:attribution _:148153 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:148189 a rdf:Statement ;
up:attribution _:148154 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:148190 a rdf:Statement ;
up:attribution _:148155 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005506 .
_:148191 a rdf:Statement ;
up:attribution _:148156 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:148192 a rdf:Statement ;
up:source unirule:MF_00372 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:148193 a rdf:Statement ;
up:attribution _:148157 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:148194 a rdf:Statement ;
up:source unirule:MF_00372 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:148195 a rdf:Statement ;
up:attribution _:148158 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:148196 a rdf:Statement ;
up:source unirule:MF_00372 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
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rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:148198 a rdf:Statement ;
up:source unirule:MF_00372 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:148199 a rdf:Statement ;
up:attribution _:148160 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:148200 a rdf:Statement ;
up:source unirule:MF_00372 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:148201 a rdf:Statement ;
up:attribution _:148161 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:148202 a rdf:Statement ;
up:source unirule:MF_00372 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:148203 a rdf:Statement ;
up:attribution _:148162 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:148204 a rdf:Statement ;
up:source unirule:MF_00372 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:148205 a rdf:Statement ;
up:attribution _:148163 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:148206 a rdf:Statement ;
up:source unirule:MF_00372 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:148207 a rdf:Statement ;
up:attribution _:148164 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:148208 a rdf:Statement ;
up:source unirule:MF_00372 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:148209 a rdf:Statement ;
up:attribution _:148165 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:148210 a rdf:Statement ;
up:source unirule:MF_00372 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:148211 a rdf:Statement ;
up:attribution _:148166 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:148212 a rdf:Statement ;
up:source unirule:MF_00372 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:148213 a rdf:Statement ;
up:attribution _:148167 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:148214 a rdf:Statement ;
up:source unirule:MF_00372 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:148215 a rdf:Statement ;
up:attribution _:148168 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:148216 a rdf:Statement ;
up:source unirule:MF_00372 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:148217 a rdf:Statement ;
up:attribution _:148169 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:148218 a rdf:Statement ;
up:source unirule:MF_00372 ;
rdf:subject ?pfs95 ;
rdf:predicate up:annotation ;
rdf:object ?annotation96 .
_:148219 a rdf:Statement ;
up:attribution _:148170 ;
rdf:subject ?pfs95 ;
rdf:predicate up:annotation ;
rdf:object ?annotation96 .
_:148220 a rdf:Statement ;
up:source unirule:MF_00372 ;
rdf:subject ?pfs102 ;
rdf:predicate up:annotation ;
rdf:object ?annotation103 .
_:148221 a rdf:Statement ;
up:attribution _:148171 ;
rdf:subject ?pfs102 ;
rdf:predicate up:annotation ;
rdf:object ?annotation103 .
_:148222 a rdf:Statement ;
up:source unirule:MF_00372 ;
rdf:subject ?pfs109 ;
rdf:predicate up:annotation ;
rdf:object ?annotation110 .
_:148223 a rdf:Statement ;
up:attribution _:148172 ;
rdf:subject ?pfs109 ;
rdf:predicate up:annotation ;
rdf:object ?annotation110 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00372
#Rule MF_00372 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-06-28
VALUES ?supertaxon116 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00372 .
?thisOrganism rdfs:subClassOf+ ?supertaxon116 .
BIND(URI(CONCAT(STR(?this), '#MF_00372a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00372a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00372a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00372a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00372a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00372a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00372a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionP42084122 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP42084124 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP42084MF_00372117 .
?templateMotifSequenceMatchRegionP42084122 faldo:begin ?templateMotifSequenceMatchBeginP42084123 .
?templateMotifSequenceMatchBeginP42084123 faldo:position ?templateMotifSequenceMatchBeginPositionP42084118 ;
faldo:reference isoform:P42084-1 .
?templateMotifSequenceProfileAlignmentOperationP42084124 edam:has_input signature:MF_00372 ;
rdf:type edam:operation_0300 .
?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00372128 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP42084MF_00372119 .
?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00372127 .
?targetMotifMatchRegionMatchBeginMF_00372127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00372120 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00372128 edam:has_input signature:MF_00372 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42084MF_00372117, 1, (STRLEN(?templateMotifCigarP42084MF_00372117) - STRLEN(REPLACE(?templateMotifCigarP42084MF_00372117, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionP42084118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42084MF_00372119, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372119) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42084MF_00372119, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372119) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) .
BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_00372120) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42084MF_00372117, 1, (STRLEN(?templateMotifCigarP42084MF_00372117) - STRLEN(REPLACE(?templateMotifCigarP42084MF_00372117, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionP42084118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42084MF_00372119, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372119) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42084MF_00372119, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372119) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) .
BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_00372120) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42084MF_00372117, 1, (STRLEN(?templateMotifCigarP42084MF_00372117) - STRLEN(REPLACE(?templateMotifCigarP42084MF_00372117, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionP42084118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1135) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42084MF_00372119, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372119) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42084MF_00372119, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372119) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1135), '}'), '')))), '[^-]', ''))) AS ?step2136) .
BIND(((?step2136 + ?targetMotifMatchRegionMatchBeginPositionMF_00372120) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t137) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42084MF_00372117, 1, (STRLEN(?templateMotifCigarP42084MF_00372117) - STRLEN(REPLACE(?templateMotifCigarP42084MF_00372117, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionP42084118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42084MF_00372119, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372119) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42084MF_00372119, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372119) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) .
BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_00372120) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t140) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42084MF_00372117, 1, (STRLEN(?templateMotifCigarP42084MF_00372117) - STRLEN(REPLACE(?templateMotifCigarP42084MF_00372117, CONCAT('^(?:-*[^-]){', STR(((249 - ?templateMotifSequenceMatchBeginPositionP42084118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42084MF_00372119, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372119) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42084MF_00372119, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372119) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_00372120) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42084MF_00372117, 1, (STRLEN(?templateMotifCigarP42084MF_00372117) - STRLEN(REPLACE(?templateMotifCigarP42084MF_00372117, CONCAT('^(?:-*[^-]){', STR(((249 - ?templateMotifSequenceMatchBeginPositionP42084118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42084MF_00372119, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372119) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42084MF_00372119, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372119) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_00372120) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t146) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42084MF_00372117, 1, (STRLEN(?templateMotifCigarP42084MF_00372117) - STRLEN(REPLACE(?templateMotifCigarP42084MF_00372117, CONCAT('^(?:-*[^-]){', STR(((324 - ?templateMotifSequenceMatchBeginPositionP42084118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42084MF_00372119, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372119) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42084MF_00372119, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372119) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) .
BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_00372120) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER (REGEX('[DN]', SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1))) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42084MF_00372117, 1, (STRLEN(?templateMotifCigarP42084MF_00372117) - STRLEN(REPLACE(?templateMotifCigarP42084MF_00372117, CONCAT('^(?:-*[^-]){', STR(((324 - ?templateMotifSequenceMatchBeginPositionP42084118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42084MF_00372119, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372119) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42084MF_00372119, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372119) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_00372120) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) .
FILTER (REGEX('[DN]', SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1))) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionP42084158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP42084160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP42084MF_00372153 .
?templateMotifSequenceMatchRegionP42084158 faldo:begin ?templateMotifSequenceMatchBeginP42084159 .
?templateMotifSequenceMatchBeginP42084159 faldo:position ?templateMotifSequenceMatchBeginPositionP42084154 ;
faldo:reference isoform:P42084-1 .
?templateMotifSequenceProfileAlignmentOperationP42084160 edam:has_input signature:MF_00372 ;
rdf:type edam:operation_0300 .
?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00372164 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP42084MF_00372155 .
?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00372163 .
?targetMotifMatchRegionMatchBeginMF_00372163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00372156 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00372164 edam:has_input signature:MF_00372 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42084MF_00372153, 1, (STRLEN(?templateMotifCigarP42084MF_00372153) - STRLEN(REPLACE(?templateMotifCigarP42084MF_00372153, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionP42084154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42084MF_00372155, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372155) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42084MF_00372155, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372155) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_00372156) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs2t167) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00372a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch172 faldo:location ?templateMotifSequenceMatchRegionP42084173 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP42084175 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP42084MF_00372168 .
?templateMotifSequenceMatchRegionP42084173 faldo:begin ?templateMotifSequenceMatchBeginP42084174 .
?templateMotifSequenceMatchBeginP42084174 faldo:position ?templateMotifSequenceMatchBeginPositionP42084169 ;
faldo:reference isoform:P42084-1 .
?templateMotifSequenceProfileAlignmentOperationP42084175 edam:has_input signature:MF_00372 ;
rdf:type edam:operation_0300 .
?targetMotifMatch176 faldo:location ?targetMotifMatchRegionMatch177 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00372179 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP42084MF_00372170 .
?targetMotifMatchRegionMatch177 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00372178 .
?targetMotifMatchRegionMatchBeginMF_00372178 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00372171 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00372179 edam:has_input signature:MF_00372 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42084MF_00372168, 1, (STRLEN(?templateMotifCigarP42084MF_00372168) - STRLEN(REPLACE(?templateMotifCigarP42084MF_00372168, CONCAT('^(?:-*[^-]){', STR(((152 - ?templateMotifSequenceMatchBeginPositionP42084169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42084MF_00372170, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372170) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42084MF_00372170, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372170) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) .
BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_00372171) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs2t182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse70) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00372a68')) AS ?annotation68) .
BIND(?this AS ?pfs67) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch187 faldo:location ?templateMotifSequenceMatchRegionP42084188 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP42084190 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP42084MF_00372183 .
?templateMotifSequenceMatchRegionP42084188 faldo:begin ?templateMotifSequenceMatchBeginP42084189 .
?templateMotifSequenceMatchBeginP42084189 faldo:position ?templateMotifSequenceMatchBeginPositionP42084184 ;
faldo:reference isoform:P42084-1 .
?templateMotifSequenceProfileAlignmentOperationP42084190 edam:has_input signature:MF_00372 ;
rdf:type edam:operation_0300 .
?targetMotifMatch191 faldo:location ?targetMotifMatchRegionMatch192 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00372194 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP42084MF_00372185 .
?targetMotifMatchRegionMatch192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00372193 .
?targetMotifMatchRegionMatchBeginMF_00372193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00372186 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00372194 edam:has_input signature:MF_00372 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42084MF_00372183, 1, (STRLEN(?templateMotifCigarP42084MF_00372183) - STRLEN(REPLACE(?templateMotifCigarP42084MF_00372183, CONCAT('^(?:-*[^-]){', STR(((152 - ?templateMotifSequenceMatchBeginPositionP42084184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42084MF_00372185, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372185) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42084MF_00372185, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372185) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) .
BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_00372186) - 1) AS ?thisPositionOn79) .
BIND(?thisPositionOn79 AS ?thisPositionOn80) .
BIND(?this AS ?pfs2t197) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse77) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00372a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionP42084203 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP42084205 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP42084MF_00372198 .
?templateMotifSequenceMatchRegionP42084203 faldo:begin ?templateMotifSequenceMatchBeginP42084204 .
?templateMotifSequenceMatchBeginP42084204 faldo:position ?templateMotifSequenceMatchBeginPositionP42084199 ;
faldo:reference isoform:P42084-1 .
?templateMotifSequenceProfileAlignmentOperationP42084205 edam:has_input signature:MF_00372 ;
rdf:type edam:operation_0300 .
?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00372209 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP42084MF_00372200 .
?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00372208 .
?targetMotifMatchRegionMatchBeginMF_00372208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00372201 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00372209 edam:has_input signature:MF_00372 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42084MF_00372198, 1, (STRLEN(?templateMotifCigarP42084MF_00372198) - STRLEN(REPLACE(?templateMotifCigarP42084MF_00372198, CONCAT('^(?:-*[^-]){', STR(((185 - ?templateMotifSequenceMatchBeginPositionP42084199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42084MF_00372200, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372200) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42084MF_00372200, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372200) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) .
BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_00372201) - 1) AS ?thisPositionOn86) .
BIND(?thisPositionOn86 AS ?thisPositionOn87) .
BIND(?this AS ?pfs2t212) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse84) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00372a82')) AS ?annotation82) .
BIND(?this AS ?pfs81) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch217 faldo:location ?templateMotifSequenceMatchRegionP42084218 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP42084220 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP42084MF_00372213 .
?templateMotifSequenceMatchRegionP42084218 faldo:begin ?templateMotifSequenceMatchBeginP42084219 .
?templateMotifSequenceMatchBeginP42084219 faldo:position ?templateMotifSequenceMatchBeginPositionP42084214 ;
faldo:reference isoform:P42084-1 .
?templateMotifSequenceProfileAlignmentOperationP42084220 edam:has_input signature:MF_00372 ;
rdf:type edam:operation_0300 .
?targetMotifMatch221 faldo:location ?targetMotifMatchRegionMatch222 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00372224 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP42084MF_00372215 .
?targetMotifMatchRegionMatch222 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00372223 .
?targetMotifMatchRegionMatchBeginMF_00372223 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00372216 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00372224 edam:has_input signature:MF_00372 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42084MF_00372213, 1, (STRLEN(?templateMotifCigarP42084MF_00372213) - STRLEN(REPLACE(?templateMotifCigarP42084MF_00372213, CONCAT('^(?:-*[^-]){', STR(((252 - ?templateMotifSequenceMatchBeginPositionP42084214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1225) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42084MF_00372215, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372215) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42084MF_00372215, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372215) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), '')))), '[^-]', ''))) AS ?step2226) .
BIND(((?step2226 + ?targetMotifMatchRegionMatchBeginPositionMF_00372216) - 1) AS ?thisPositionOn93) .
BIND(?thisPositionOn93 AS ?thisPositionOn94) .
BIND(?this AS ?pfs2t227) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfsb90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfse91) .
FILTER (REGEX('[EQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn93, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00372a89')) AS ?annotation89) .
BIND(?this AS ?pfs88) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch232 faldo:location ?templateMotifSequenceMatchRegionP42084233 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP42084235 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP42084MF_00372228 .
?templateMotifSequenceMatchRegionP42084233 faldo:begin ?templateMotifSequenceMatchBeginP42084234 .
?templateMotifSequenceMatchBeginP42084234 faldo:position ?templateMotifSequenceMatchBeginPositionP42084229 ;
faldo:reference isoform:P42084-1 .
?templateMotifSequenceProfileAlignmentOperationP42084235 edam:has_input signature:MF_00372 ;
rdf:type edam:operation_0300 .
?targetMotifMatch236 faldo:location ?targetMotifMatchRegionMatch237 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00372239 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP42084MF_00372230 .
?targetMotifMatchRegionMatch237 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00372238 .
?targetMotifMatchRegionMatchBeginMF_00372238 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00372231 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00372239 edam:has_input signature:MF_00372 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42084MF_00372228, 1, (STRLEN(?templateMotifCigarP42084MF_00372228) - STRLEN(REPLACE(?templateMotifCigarP42084MF_00372228, CONCAT('^(?:-*[^-]){', STR(((326 - ?templateMotifSequenceMatchBeginPositionP42084229) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1240) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42084MF_00372230, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372230) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42084MF_00372230, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372230) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), '')))), '[^-]', ''))) AS ?step2241) .
BIND(((?step2241 + ?targetMotifMatchRegionMatchBeginPositionMF_00372231) - 1) AS ?thisPositionOn100) .
BIND(?thisPositionOn100 AS ?thisPositionOn101) .
BIND(?this AS ?pfs2t242) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfsb97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfse98) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn100, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00372a96')) AS ?annotation96) .
BIND(?this AS ?pfs95) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch247 faldo:location ?templateMotifSequenceMatchRegionP42084248 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP42084250 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP42084MF_00372243 .
?templateMotifSequenceMatchRegionP42084248 faldo:begin ?templateMotifSequenceMatchBeginP42084249 .
?templateMotifSequenceMatchBeginP42084249 faldo:position ?templateMotifSequenceMatchBeginPositionP42084244 ;
faldo:reference isoform:P42084-1 .
?templateMotifSequenceProfileAlignmentOperationP42084250 edam:has_input signature:MF_00372 ;
rdf:type edam:operation_0300 .
?targetMotifMatch251 faldo:location ?targetMotifMatchRegionMatch252 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00372254 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP42084MF_00372245 .
?targetMotifMatchRegionMatch252 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00372253 .
?targetMotifMatchRegionMatchBeginMF_00372253 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00372246 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00372254 edam:has_input signature:MF_00372 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42084MF_00372243, 1, (STRLEN(?templateMotifCigarP42084MF_00372243) - STRLEN(REPLACE(?templateMotifCigarP42084MF_00372243, CONCAT('^(?:-*[^-]){', STR(((328 - ?templateMotifSequenceMatchBeginPositionP42084244) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1255) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42084MF_00372245, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372245) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42084MF_00372245, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372245) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), '')))), '[^-]', ''))) AS ?step2256) .
BIND(((?step2256 + ?targetMotifMatchRegionMatchBeginPositionMF_00372246) - 1) AS ?thisPositionOn107) .
BIND(?thisPositionOn107 AS ?thisPositionOn108) .
BIND(?this AS ?pfs2t257) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfsb104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfse105) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn107, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00372a103')) AS ?annotation103) .
BIND(?this AS ?pfs102) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch262 faldo:location ?templateMotifSequenceMatchRegionP42084263 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP42084265 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP42084MF_00372258 .
?templateMotifSequenceMatchRegionP42084263 faldo:begin ?templateMotifSequenceMatchBeginP42084264 .
?templateMotifSequenceMatchBeginP42084264 faldo:position ?templateMotifSequenceMatchBeginPositionP42084259 ;
faldo:reference isoform:P42084-1 .
?templateMotifSequenceProfileAlignmentOperationP42084265 edam:has_input signature:MF_00372 ;
rdf:type edam:operation_0300 .
?targetMotifMatch266 faldo:location ?targetMotifMatchRegionMatch267 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00372269 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP42084MF_00372260 .
?targetMotifMatchRegionMatch267 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00372268 .
?targetMotifMatchRegionMatchBeginMF_00372268 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00372261 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00372269 edam:has_input signature:MF_00372 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42084MF_00372258, 1, (STRLEN(?templateMotifCigarP42084MF_00372258) - STRLEN(REPLACE(?templateMotifCigarP42084MF_00372258, CONCAT('^(?:-*[^-]){', STR(((329 - ?templateMotifSequenceMatchBeginPositionP42084259) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1270) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42084MF_00372260, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372260) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42084MF_00372260, 1, (STRLEN(?targetMotifMatchCigarP42084MF_00372260) - STRLEN(REPLACE(?targetMotifMatchCigarP42084MF_00372260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), '')))), '[^-]', ''))) AS ?step2271) .
BIND(((?step2271 + ?targetMotifMatchRegionMatchBeginPositionMF_00372261) - 1) AS ?thisPositionOn114) .
BIND(?thisPositionOn114 AS ?thisPositionOn115) .
BIND(?this AS ?pfs2t272) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfsb111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfse112) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn114, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00372a110')) AS ?annotation110) .
BIND(?this AS ?pfs109) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag273) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag273, ?UNBOUND_VARIABLE) AS ?case10) .
}
"xsd:string |
