| http://purl.uniprot.org/unirules/MF_00488#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:195620 up:source unirule:MF_00488 .
_:195621 up:source unirule:MF_00488 .
_:195622 up:source unirule:MF_00488 .
_:195623 up:source unirule:MF_00488 .
_:195624 up:source unirule:MF_00488 .
_:195625 up:source unirule:MF_00488 .
_:195626 up:source unirule:MF_00488 .
_:195627 up:source unirule:MF_00488 .
_:195628 up:source unirule:MF_00488 .
_:195629 up:source unirule:MF_00488 .
_:195630 up:source unirule:MF_00488 .
_:195631 up:source unirule:MF_00488 .
_:195632 up:source unirule:MF_00488 .
_:195633 up:source unirule:MF_00488 .
_:195634 up:source unirule:MF_00488 .
_:195635 up:source unirule:MF_00488 .
_:195636 up:source unirule:MF_00488 .
_:195637 up:source unirule:MF_00488 .
_:195638 up:source unirule:MF_00488 .
_:195639 up:source unirule:MF_00488 .
_:195640 up:source unirule:MF_00488 .
_:195641 up:source unirule:MF_00488 .
_:195642 up:source unirule:MF_00488 .
_:195643 up:source unirule:MF_00488 .
_:195644 up:source unirule:MF_00488 .
_:195645 up:source unirule:MF_00488 .
_:195646 up:source unirule:MF_00488 .
_:195647 up:source unirule:MF_00488 .
_:195648 up:source unirule:MF_00488 .
_:195649 up:source unirule:MF_00488 .
_:195650 up:source unirule:MF_00488 .
_:195651 up:source unirule:MF_00488 .
_:195652 up:source unirule:MF_00488 .
_:195653 up:source unirule:MF_00488 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0004459 ,
GO:0005737 ,
GO:0006096 ,
keyword:520 ,
keyword:560 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.1.1.27' ;
up:fullName 'L-lactate dehydrogenase' ;
up:shortName 'L-LDH' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'ldh' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the conversion of lactate to pyruvate.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Fermentation; pyruvate fermentation to lactate; (S)-lactate from pyruvate: step 1/1.' .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the LDH/MDH superfamily. LDH family.' .
?case10 up:classifiedWith keyword:21 .
?case11 up:classifiedWith keyword:597 .
?case12 up:classifiedWith keyword:346 .
?pfs13 up:annotation ?annotation14 ,
?annotation20 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:32966 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:32966 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphotyrosine' .
?pfsb28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:57540 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:57540 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf ?molecule51 .
?molecule51 rdfs:label 'substrate' .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf ?molecule59 .
?molecule59 rdfs:label 'substrate' .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb64 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf chebi:57540 .
?pfs75 up:annotation ?annotation76 .
?annotation76 faldo:begin ?pfsb77 ;
faldo:end ?pfse78 ;
up:ligand ?ligand79 ;
rdf:type up:Binding_Site_Annotation .
?pfsb77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?ligand79 rdfs:subClassOf chebi:57540 .
?pfs82 up:annotation ?annotation83 .
?annotation83 faldo:begin ?pfsb84 ;
faldo:end ?pfse85 ;
up:ligand ?ligand86 ;
rdf:type up:Binding_Site_Annotation .
?pfsb84 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfse85 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?ligand86 rdfs:subClassOf chebi:57540 .
?pfs89 up:annotation ?annotation90 .
?annotation90 faldo:begin ?pfsb91 ;
faldo:end ?pfse92 ;
up:ligand ?ligand93 ;
rdf:type up:Binding_Site_Annotation .
?pfsb91 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?pfse92 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?ligand93 rdfs:subClassOf chebi:57540 .
?pfs96 up:annotation ?annotation97 .
?annotation97 faldo:begin ?pfsb98 ;
faldo:end ?pfse99 ;
up:ligand ?ligand100 ;
rdf:type up:Binding_Site_Annotation .
?pfsb98 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?pfse99 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?ligand100 rdfs:subClassOf ?molecule101 .
?molecule101 rdfs:label 'substrate' .
?pfs104 up:annotation ?annotation105 .
?annotation105 faldo:begin ?pfsb106 ;
faldo:end ?pfse107 ;
up:ligand ?ligand108 ;
rdf:type up:Binding_Site_Annotation .
?pfsb106 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?pfse107 faldo:position ?thisPositionOn111 ;
rdf:type faldo:ExactPosition .
?ligand108 rdfs:subClassOf ?molecule109 .
?molecule109 rdfs:label 'substrate' .
?pfs112 up:annotation ?annotation113 .
?annotation113 faldo:begin ?pfsb114 ;
faldo:end ?pfse115 ;
up:ligand ?ligand116 ;
rdf:type up:Binding_Site_Annotation .
?pfsb114 faldo:position ?thisPositionOn117 ;
rdf:type faldo:ExactPosition .
?pfse115 faldo:position ?thisPositionOn118 ;
rdf:type faldo:ExactPosition .
?ligand116 rdfs:subClassOf chebi:57540 .
?pfs119 up:annotation ?annotation120 .
?annotation120 faldo:begin ?pfsb121 ;
faldo:end ?pfse122 ;
up:ligand ?ligand123 ;
rdf:type up:Binding_Site_Annotation .
?pfsb121 faldo:position ?thisPositionOn124 ;
rdf:type faldo:ExactPosition .
?pfse122 faldo:position ?thisPositionOn125 ;
rdf:type faldo:ExactPosition .
?ligand123 rdfs:subClassOf chebi:57540 .
?pfs126 up:annotation ?annotation127 .
?annotation127 faldo:begin ?pfsb128 ;
faldo:end ?pfse129 ;
up:ligand ?ligand130 ;
rdf:type up:Binding_Site_Annotation .
?pfsb128 faldo:position ?thisPositionOn132 ;
rdf:type faldo:ExactPosition .
?pfse129 faldo:position ?thisPositionOn133 ;
rdf:type faldo:ExactPosition .
?ligand130 rdfs:subClassOf ?molecule131 .
?molecule131 rdfs:label 'substrate' .
_:195654 a rdf:Statement ;
up:attribution _:195620 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:195655 a rdf:Statement ;
up:attribution _:195621 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:195656 a rdf:Statement ;
up:attribution _:195622 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:195657 a rdf:Statement ;
up:attribution _:195623 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:195658 a rdf:Statement ;
up:attribution _:195624 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:195659 a rdf:Statement ;
up:attribution _:195625 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:195660 a rdf:Statement ;
up:attribution _:195626 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:195661 a rdf:Statement ;
up:attribution _:195627 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:195662 a rdf:Statement ;
up:attribution _:195628 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:195663 a rdf:Statement ;
up:attribution _:195629 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:195664 a rdf:Statement ;
up:attribution _:195630 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:195665 a rdf:Statement ;
up:attribution _:195631 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004459 .
_:195666 a rdf:Statement ;
up:attribution _:195632 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006096 .
_:195667 a rdf:Statement ;
up:attribution _:195633 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:195668 a rdf:Statement ;
up:attribution _:195634 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:21 .
_:195669 a rdf:Statement ;
up:attribution _:195635 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:195670 a rdf:Statement ;
up:attribution _:195636 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:346 .
_:195671 a rdf:Statement ;
up:source unirule:MF_00488 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:195672 a rdf:Statement ;
up:attribution _:195637 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:195673 a rdf:Statement ;
up:source unirule:MF_00488 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:195674 a rdf:Statement ;
up:attribution _:195638 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:195675 a rdf:Statement ;
up:source unirule:MF_00488 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:195676 a rdf:Statement ;
up:attribution _:195639 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:195677 a rdf:Statement ;
up:source unirule:MF_00488 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:195678 a rdf:Statement ;
up:attribution _:195640 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:195679 a rdf:Statement ;
up:source unirule:MF_00488 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:195680 a rdf:Statement ;
up:attribution _:195641 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:195681 a rdf:Statement ;
up:source unirule:MF_00488 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:195682 a rdf:Statement ;
up:attribution _:195642 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:195683 a rdf:Statement ;
up:source unirule:MF_00488 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:195684 a rdf:Statement ;
up:attribution _:195643 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:195685 a rdf:Statement ;
up:source unirule:MF_00488 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:195686 a rdf:Statement ;
up:attribution _:195644 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:195687 a rdf:Statement ;
up:source unirule:MF_00488 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:195688 a rdf:Statement ;
up:attribution _:195645 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:195689 a rdf:Statement ;
up:source unirule:MF_00488 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:195690 a rdf:Statement ;
up:attribution _:195646 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:195691 a rdf:Statement ;
up:source unirule:MF_00488 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:195692 a rdf:Statement ;
up:attribution _:195647 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:195693 a rdf:Statement ;
up:source unirule:MF_00488 ;
rdf:subject ?pfs89 ;
rdf:predicate up:annotation ;
rdf:object ?annotation90 .
_:195694 a rdf:Statement ;
up:attribution _:195648 ;
rdf:subject ?pfs89 ;
rdf:predicate up:annotation ;
rdf:object ?annotation90 .
_:195695 a rdf:Statement ;
up:source unirule:MF_00488 ;
rdf:subject ?pfs96 ;
rdf:predicate up:annotation ;
rdf:object ?annotation97 .
_:195696 a rdf:Statement ;
up:attribution _:195649 ;
rdf:subject ?pfs96 ;
rdf:predicate up:annotation ;
rdf:object ?annotation97 .
_:195697 a rdf:Statement ;
up:source unirule:MF_00488 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:195698 a rdf:Statement ;
up:attribution _:195650 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:195699 a rdf:Statement ;
up:source unirule:MF_00488 ;
rdf:subject ?pfs112 ;
rdf:predicate up:annotation ;
rdf:object ?annotation113 .
_:195700 a rdf:Statement ;
up:attribution _:195651 ;
rdf:subject ?pfs112 ;
rdf:predicate up:annotation ;
rdf:object ?annotation113 .
_:195701 a rdf:Statement ;
up:source unirule:MF_00488 ;
rdf:subject ?pfs119 ;
rdf:predicate up:annotation ;
rdf:object ?annotation120 .
_:195702 a rdf:Statement ;
up:attribution _:195652 ;
rdf:subject ?pfs119 ;
rdf:predicate up:annotation ;
rdf:object ?annotation120 .
_:195703 a rdf:Statement ;
up:source unirule:MF_00488 ;
rdf:subject ?pfs126 ;
rdf:predicate up:annotation ;
rdf:object ?annotation127 .
_:195704 a rdf:Statement ;
up:attribution _:195653 ;
rdf:subject ?pfs126 ;
rdf:predicate up:annotation ;
rdf:object ?annotation127 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00488
#Rule MF_00488 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-06-12
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00488 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00488a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00488a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00488a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00488a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00488a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00488a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00488a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch138 faldo:location ?templateMotifSequenceMatchRegionP00344139 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344141 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00344MF_00488134 .
?templateMotifSequenceMatchRegionP00344139 faldo:begin ?templateMotifSequenceMatchBeginP00344140 .
?templateMotifSequenceMatchBeginP00344140 faldo:position ?templateMotifSequenceMatchBeginPositionP00344135 ;
faldo:reference isoform:P00344-1 .
?templateMotifSequenceProfileAlignmentOperationP00344141 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
?targetMotifMatch142 faldo:location ?targetMotifMatchRegionMatch143 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488145 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00344MF_00488136 .
?targetMotifMatchRegionMatch143 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488144 .
?targetMotifMatchRegionMatchBeginMF_00488144 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488137 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00488145 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488134, 1, (STRLEN(?templateMotifCigarP00344MF_00488134) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488134, CONCAT('^(?:-*[^-]){', STR(((157 - ?templateMotifSequenceMatchBeginPositionP00344135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488136, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488136) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488136, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488136) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) .
BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_00488137) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1))) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488134, 1, (STRLEN(?templateMotifCigarP00344MF_00488134) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488134, CONCAT('^(?:-*[^-]){', STR(((172 - ?templateMotifSequenceMatchBeginPositionP00344135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488136, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488136) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488136, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488136) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) .
BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_00488137) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t151) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'H')) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch156 faldo:location ?templateMotifSequenceMatchRegionP13714157 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP13714159 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP13714MF_00488152 .
?templateMotifSequenceMatchRegionP13714157 faldo:begin ?templateMotifSequenceMatchBeginP13714158 .
?templateMotifSequenceMatchBeginP13714158 faldo:position ?templateMotifSequenceMatchBeginPositionP13714153 ;
faldo:reference isoform:P13714-1 .
?templateMotifSequenceProfileAlignmentOperationP13714159 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
?targetMotifMatch160 faldo:location ?targetMotifMatchRegionMatch161 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488163 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP13714MF_00488154 .
?targetMotifMatchRegionMatch161 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488162 .
?targetMotifMatchRegionMatchBeginMF_00488162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488155 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00488163 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagPhosphotyrosine) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP13714MF_00488152, 1, (STRLEN(?templateMotifCigarP13714MF_00488152) - STRLEN(REPLACE(?templateMotifCigarP13714MF_00488152, CONCAT('^(?:-*[^-]){', STR(((223 - ?templateMotifSequenceMatchBeginPositionP13714153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP13714MF_00488154, 1, (STRLEN(?targetMotifMatchCigarP13714MF_00488154) - STRLEN(REPLACE(?targetMotifMatchCigarP13714MF_00488154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP13714MF_00488154, 1, (STRLEN(?targetMotifMatchCigarP13714MF_00488154) - STRLEN(REPLACE(?targetMotifMatchCigarP13714MF_00488154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) .
BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_00488155) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs2t166) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00488a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch171 faldo:location ?templateMotifSequenceMatchRegionP00344172 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344174 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00344MF_00488167 .
?templateMotifSequenceMatchRegionP00344172 faldo:begin ?templateMotifSequenceMatchBeginP00344173 .
?templateMotifSequenceMatchBeginP00344173 faldo:position ?templateMotifSequenceMatchBeginPositionP00344168 ;
faldo:reference isoform:P00344-1 .
?templateMotifSequenceProfileAlignmentOperationP00344174 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
?targetMotifMatch175 faldo:location ?targetMotifMatchRegionMatch176 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488178 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00344MF_00488169 .
?targetMotifMatchRegionMatch176 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488177 .
?targetMotifMatchRegionMatchBeginMF_00488177 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488170 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00488178 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488167, 1, (STRLEN(?templateMotifCigarP00344MF_00488167) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488167, CONCAT('^(?:-*[^-]){', STR(((83 - ?templateMotifSequenceMatchBeginPositionP00344168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488169, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488169) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488169, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488169) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), '')))), '[^-]', ''))) AS ?step2180) .
BIND(((?step2180 + ?targetMotifMatchRegionMatchBeginPositionMF_00488170) - 1) AS ?thisPositionOn37) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488167, 1, (STRLEN(?templateMotifCigarP00344MF_00488167) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488167, CONCAT('^(?:-*[^-]){', STR(((84 - ?templateMotifSequenceMatchBeginPositionP00344168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488169, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488169) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488169, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488169) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) .
BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_00488170) - 1) AS ?thisPositionOn38) .
BIND(?this AS ?pfs3t183) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER (REGEX('G[AVL]', SUBSTR(?thisSequenceValue, ?thisPositionOn37, (?thisPositionOn38 - ?thisPositionOn37)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00488a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch188 faldo:location ?templateMotifSequenceMatchRegionP00344189 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344191 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00344MF_00488184 .
?templateMotifSequenceMatchRegionP00344189 faldo:begin ?templateMotifSequenceMatchBeginP00344190 .
?templateMotifSequenceMatchBeginP00344190 faldo:position ?templateMotifSequenceMatchBeginPositionP00344185 ;
faldo:reference isoform:P00344-1 .
?templateMotifSequenceProfileAlignmentOperationP00344191 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
?targetMotifMatch192 faldo:location ?targetMotifMatchRegionMatch193 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488195 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00344MF_00488186 .
?targetMotifMatchRegionMatch193 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488194 .
?targetMotifMatchRegionMatchBeginMF_00488194 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488187 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00488195 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488184, 1, (STRLEN(?templateMotifCigarP00344MF_00488184) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488184, CONCAT('^(?:-*[^-]){', STR(((122 - ?templateMotifSequenceMatchBeginPositionP00344185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488186, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488186) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488186, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488186) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), '')))), '[^-]', ''))) AS ?step2197) .
BIND(((?step2197 + ?targetMotifMatchRegionMatchBeginPositionMF_00488187) - 1) AS ?thisPositionOn44) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488184, 1, (STRLEN(?templateMotifCigarP00344MF_00488184) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488184, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP00344185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488186, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488186) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488186, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488186) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), '')))), '[^-]', ''))) AS ?step2199) .
BIND(((?step2199 + ?targetMotifMatchRegionMatchBeginPositionMF_00488187) - 1) AS ?thisPositionOn45) .
BIND(?this AS ?pfs3t200) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER (REGEX('[AIV][ARNDCQEGHILKMFPSTWYVBZJUOX]N', SUBSTR(?thisSequenceValue, ?thisPositionOn44, (?thisPositionOn45 - ?thisPositionOn44)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00488a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch205 faldo:location ?templateMotifSequenceMatchRegionP00344206 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344208 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00344MF_00488201 .
?templateMotifSequenceMatchRegionP00344206 faldo:begin ?templateMotifSequenceMatchBeginP00344207 .
?templateMotifSequenceMatchBeginP00344207 faldo:position ?templateMotifSequenceMatchBeginPositionP00344202 ;
faldo:reference isoform:P00344-1 .
?templateMotifSequenceProfileAlignmentOperationP00344208 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
?targetMotifMatch209 faldo:location ?targetMotifMatchRegionMatch210 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488212 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00344MF_00488203 .
?targetMotifMatchRegionMatch210 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488211 .
?targetMotifMatchRegionMatchBeginMF_00488211 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488204 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00488212 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488201, 1, (STRLEN(?templateMotifCigarP00344MF_00488201) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488201, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP00344202) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1213) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488203, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488203) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488203, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488203) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), '')))), '[^-]', ''))) AS ?step2214) .
BIND(((?step2214 + ?targetMotifMatchRegionMatchBeginPositionMF_00488204) - 1) AS ?thisPositionOn52) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488201, 1, (STRLEN(?templateMotifCigarP00344MF_00488201) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488201, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionP00344202) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1215) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488203, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488203) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488203, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488203) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), '')))), '[^-]', ''))) AS ?step2216) .
BIND(((?step2216 + ?targetMotifMatchRegionMatchBeginPositionMF_00488204) - 1) AS ?thisPositionOn53) .
BIND(?this AS ?pfs3t217) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse49) .
FILTER (REGEX('N[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]D', SUBSTR(?thisSequenceValue, ?thisPositionOn52, (?thisPositionOn53 - ?thisPositionOn52)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00488a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch222 faldo:location ?templateMotifSequenceMatchRegionP00344223 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344225 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00344MF_00488218 .
?templateMotifSequenceMatchRegionP00344223 faldo:begin ?templateMotifSequenceMatchBeginP00344224 .
?templateMotifSequenceMatchBeginP00344224 faldo:position ?templateMotifSequenceMatchBeginPositionP00344219 ;
faldo:reference isoform:P00344-1 .
?templateMotifSequenceProfileAlignmentOperationP00344225 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
?targetMotifMatch226 faldo:location ?targetMotifMatchRegionMatch227 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488229 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00344MF_00488220 .
?targetMotifMatchRegionMatch227 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488228 .
?targetMotifMatchRegionMatchBeginMF_00488228 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488221 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00488229 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488218, 1, (STRLEN(?templateMotifCigarP00344MF_00488218) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488218, CONCAT('^(?:-*[^-]){', STR(((152 - ?templateMotifSequenceMatchBeginPositionP00344219) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1230) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488220, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488220) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488220, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488220) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), '')))), '[^-]', ''))) AS ?step2231) .
BIND(((?step2231 + ?targetMotifMatchRegionMatchBeginPositionMF_00488221) - 1) AS ?thisPositionOn60) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488218, 1, (STRLEN(?templateMotifCigarP00344MF_00488218) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488218, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionP00344219) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488220, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488220) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488220, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488220) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) .
BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_00488221) - 1) AS ?thisPositionOn61) .
BIND(?this AS ?pfs3t234) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse57) .
FILTER (REGEX('D[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn60, (?thisPositionOn61 - ?thisPositionOn60)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00488a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch239 faldo:location ?templateMotifSequenceMatchRegionP00344240 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344242 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00344MF_00488235 .
?templateMotifSequenceMatchRegionP00344240 faldo:begin ?templateMotifSequenceMatchBeginP00344241 .
?templateMotifSequenceMatchBeginP00344241 faldo:position ?templateMotifSequenceMatchBeginPositionP00344236 ;
faldo:reference isoform:P00344-1 .
?templateMotifSequenceProfileAlignmentOperationP00344242 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
?targetMotifMatch243 faldo:location ?targetMotifMatchRegionMatch244 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488246 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00344MF_00488237 .
?targetMotifMatchRegionMatch244 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488245 .
?targetMotifMatchRegionMatchBeginMF_00488245 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488238 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00488246 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488235, 1, (STRLEN(?templateMotifCigarP00344MF_00488235) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488235, CONCAT('^(?:-*[^-]){', STR(((179 - ?templateMotifSequenceMatchBeginPositionP00344236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1247) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488237, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488237) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488237, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488237) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), '')))), '[^-]', ''))) AS ?step2248) .
BIND(((?step2248 + ?targetMotifMatchRegionMatchBeginPositionMF_00488238) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs3t249) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00488a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch254 faldo:location ?templateMotifSequenceMatchRegionP00344255 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344257 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00344MF_00488250 .
?templateMotifSequenceMatchRegionP00344255 faldo:begin ?templateMotifSequenceMatchBeginP00344256 .
?templateMotifSequenceMatchBeginP00344256 faldo:position ?templateMotifSequenceMatchBeginPositionP00344251 ;
faldo:reference isoform:P00344-1 .
?templateMotifSequenceProfileAlignmentOperationP00344257 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
?targetMotifMatch258 faldo:location ?targetMotifMatchRegionMatch259 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488261 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00344MF_00488252 .
?targetMotifMatchRegionMatch259 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488260 .
?targetMotifMatchRegionMatchBeginMF_00488260 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488253 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00488261 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488250, 1, (STRLEN(?templateMotifCigarP00344MF_00488250) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488250, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP00344251) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1262) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488252, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488252) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488252, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488252) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), '')))), '[^-]', ''))) AS ?step2263) .
BIND(((?step2263 + ?targetMotifMatchRegionMatchBeginPositionMF_00488253) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs3t264) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'V')) .
BIND(URI(CONCAT(STR(?this), '#MF_00488a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch269 faldo:location ?templateMotifSequenceMatchRegionP00344270 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344272 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00344MF_00488265 .
?templateMotifSequenceMatchRegionP00344270 faldo:begin ?templateMotifSequenceMatchBeginP00344271 .
?templateMotifSequenceMatchBeginP00344271 faldo:position ?templateMotifSequenceMatchBeginPositionP00344266 ;
faldo:reference isoform:P00344-1 .
?templateMotifSequenceProfileAlignmentOperationP00344272 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
?targetMotifMatch273 faldo:location ?targetMotifMatchRegionMatch274 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488276 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00344MF_00488267 .
?targetMotifMatchRegionMatch274 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488275 .
?targetMotifMatchRegionMatchBeginMF_00488275 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488268 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00488276 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488265, 1, (STRLEN(?templateMotifCigarP00344MF_00488265) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488265, CONCAT('^(?:-*[^-]){', STR(((38 - ?templateMotifSequenceMatchBeginPositionP00344266) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1277) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488267, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488267) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488267, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488267) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), '')))), '[^-]', ''))) AS ?step2278) .
BIND(((?step2278 + ?targetMotifMatchRegionMatchBeginPositionMF_00488268) - 1) AS ?thisPositionOn80) .
BIND(?thisPositionOn80 AS ?thisPositionOn81) .
BIND(?this AS ?pfs3t279) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse78) .
FILTER (REGEX('[DNE]', SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00488a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch284 faldo:location ?templateMotifSequenceMatchRegionP00344285 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344287 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00344MF_00488280 .
?templateMotifSequenceMatchRegionP00344285 faldo:begin ?templateMotifSequenceMatchBeginP00344286 .
?templateMotifSequenceMatchBeginP00344286 faldo:position ?templateMotifSequenceMatchBeginPositionP00344281 ;
faldo:reference isoform:P00344-1 .
?templateMotifSequenceProfileAlignmentOperationP00344287 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
?targetMotifMatch288 faldo:location ?targetMotifMatchRegionMatch289 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488291 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00344MF_00488282 .
?targetMotifMatchRegionMatch289 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488290 .
?targetMotifMatchRegionMatchBeginMF_00488290 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488283 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00488291 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488280, 1, (STRLEN(?templateMotifCigarP00344MF_00488280) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488280, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionP00344281) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1292) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488282, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488282) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488282, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488282) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), '')))), '[^-]', ''))) AS ?step2293) .
BIND(((?step2293 + ?targetMotifMatchRegionMatchBeginPositionMF_00488283) - 1) AS ?thisPositionOn87) .
BIND(?thisPositionOn87 AS ?thisPositionOn88) .
BIND(?this AS ?pfs3t294) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse85) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00488a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch299 faldo:location ?templateMotifSequenceMatchRegionP00344300 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344302 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00344MF_00488295 .
?templateMotifSequenceMatchRegionP00344300 faldo:begin ?templateMotifSequenceMatchBeginP00344301 .
?templateMotifSequenceMatchBeginP00344301 faldo:position ?templateMotifSequenceMatchBeginPositionP00344296 ;
faldo:reference isoform:P00344-1 .
?templateMotifSequenceProfileAlignmentOperationP00344302 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
?targetMotifMatch303 faldo:location ?targetMotifMatchRegionMatch304 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488306 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00344MF_00488297 .
?targetMotifMatchRegionMatch304 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488305 .
?targetMotifMatchRegionMatchBeginMF_00488305 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488298 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00488306 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488295, 1, (STRLEN(?templateMotifCigarP00344MF_00488295) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488295, CONCAT('^(?:-*[^-]){', STR(((69 - ?templateMotifSequenceMatchBeginPositionP00344296) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1307) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488297, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488297) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488297, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488297) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), '')))), '[^-]', ''))) AS ?step2308) .
BIND(((?step2308 + ?targetMotifMatchRegionMatchBeginPositionMF_00488298) - 1) AS ?thisPositionOn94) .
BIND(?thisPositionOn94 AS ?thisPositionOn95) .
BIND(?this AS ?pfs3t309) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse92) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn94, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00488a90')) AS ?annotation90) .
BIND(?this AS ?pfs89) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch314 faldo:location ?templateMotifSequenceMatchRegionP00344315 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344317 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00344MF_00488310 .
?templateMotifSequenceMatchRegionP00344315 faldo:begin ?templateMotifSequenceMatchBeginP00344316 .
?templateMotifSequenceMatchBeginP00344316 faldo:position ?templateMotifSequenceMatchBeginPositionP00344311 ;
faldo:reference isoform:P00344-1 .
?templateMotifSequenceProfileAlignmentOperationP00344317 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
?targetMotifMatch318 faldo:location ?targetMotifMatchRegionMatch319 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488321 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00344MF_00488312 .
?targetMotifMatchRegionMatch319 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488320 .
?targetMotifMatchRegionMatchBeginMF_00488320 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488313 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00488321 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488310, 1, (STRLEN(?templateMotifCigarP00344MF_00488310) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488310, CONCAT('^(?:-*[^-]){', STR(((86 - ?templateMotifSequenceMatchBeginPositionP00344311) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1322) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488312, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488312) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1322), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488312, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488312) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1322), '}'), '')))), '[^-]', ''))) AS ?step2323) .
BIND(((?step2323 + ?targetMotifMatchRegionMatchBeginPositionMF_00488313) - 1) AS ?thisPositionOn102) .
BIND(?thisPositionOn102 AS ?thisPositionOn103) .
BIND(?this AS ?pfs3t324) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse99) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn102, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_00488a97')) AS ?annotation97) .
BIND(?this AS ?pfs96) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch329 faldo:location ?templateMotifSequenceMatchRegionP00344330 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344332 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00344MF_00488325 .
?templateMotifSequenceMatchRegionP00344330 faldo:begin ?templateMotifSequenceMatchBeginP00344331 .
?templateMotifSequenceMatchBeginP00344331 faldo:position ?templateMotifSequenceMatchBeginPositionP00344326 ;
faldo:reference isoform:P00344-1 .
?templateMotifSequenceProfileAlignmentOperationP00344332 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
?targetMotifMatch333 faldo:location ?targetMotifMatchRegionMatch334 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488336 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00344MF_00488327 .
?targetMotifMatchRegionMatch334 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488335 .
?targetMotifMatchRegionMatchBeginMF_00488335 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488328 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00488336 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488325, 1, (STRLEN(?templateMotifCigarP00344MF_00488325) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488325, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionP00344326) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1337) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488327, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488327) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1337), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488327, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488327) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1337), '}'), '')))), '[^-]', ''))) AS ?step2338) .
BIND(((?step2338 + ?targetMotifMatchRegionMatchBeginPositionMF_00488328) - 1) AS ?thisPositionOn110) .
BIND(?thisPositionOn110 AS ?thisPositionOn111) .
BIND(?this AS ?pfs3t339) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfsb106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfse107) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn110, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00488a105')) AS ?annotation105) .
BIND(?this AS ?pfs104) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch344 faldo:location ?templateMotifSequenceMatchRegionP00344345 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344347 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00344MF_00488340 .
?templateMotifSequenceMatchRegionP00344345 faldo:begin ?templateMotifSequenceMatchBeginP00344346 .
?templateMotifSequenceMatchBeginP00344346 faldo:position ?templateMotifSequenceMatchBeginPositionP00344341 ;
faldo:reference isoform:P00344-1 .
?templateMotifSequenceProfileAlignmentOperationP00344347 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
?targetMotifMatch348 faldo:location ?targetMotifMatchRegionMatch349 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488351 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00344MF_00488342 .
?targetMotifMatchRegionMatch349 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488350 .
?targetMotifMatchRegionMatchBeginMF_00488350 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488343 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00488351 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488340, 1, (STRLEN(?templateMotifCigarP00344MF_00488340) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488340, CONCAT('^(?:-*[^-]){', STR(((105 - ?templateMotifSequenceMatchBeginPositionP00344341) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1352) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488342, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488342) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488342, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1352), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488342, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488342) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488342, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1352), '}'), '')))), '[^-]', ''))) AS ?step2353) .
BIND(((?step2353 + ?targetMotifMatchRegionMatchBeginPositionMF_00488343) - 1) AS ?thisPositionOn117) .
BIND(?thisPositionOn117 AS ?thisPositionOn118) .
BIND(?this AS ?pfs3t354) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfsb114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn118))) AS ?pfse115) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn117, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00488a113')) AS ?annotation113) .
BIND(?this AS ?pfs112) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch359 faldo:location ?templateMotifSequenceMatchRegionP00344360 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344362 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00344MF_00488355 .
?templateMotifSequenceMatchRegionP00344360 faldo:begin ?templateMotifSequenceMatchBeginP00344361 .
?templateMotifSequenceMatchBeginP00344361 faldo:position ?templateMotifSequenceMatchBeginPositionP00344356 ;
faldo:reference isoform:P00344-1 .
?templateMotifSequenceProfileAlignmentOperationP00344362 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
?targetMotifMatch363 faldo:location ?targetMotifMatchRegionMatch364 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488366 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00344MF_00488357 .
?targetMotifMatchRegionMatch364 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488365 .
?targetMotifMatchRegionMatchBeginMF_00488365 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488358 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00488366 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488355, 1, (STRLEN(?templateMotifCigarP00344MF_00488355) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488355, CONCAT('^(?:-*[^-]){', STR(((147 - ?templateMotifSequenceMatchBeginPositionP00344356) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1367) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488357, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488357) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488357, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1367), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488357, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488357) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488357, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1367), '}'), '')))), '[^-]', ''))) AS ?step2368) .
BIND(((?step2368 + ?targetMotifMatchRegionMatchBeginPositionMF_00488358) - 1) AS ?thisPositionOn124) .
BIND(?thisPositionOn124 AS ?thisPositionOn125) .
BIND(?this AS ?pfs3t369) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn124))) AS ?pfsb121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn125))) AS ?pfse122) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn124, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00488a120')) AS ?annotation120) .
BIND(?this AS ?pfs119) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch374 faldo:location ?templateMotifSequenceMatchRegionP00344375 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00344377 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00344MF_00488370 .
?templateMotifSequenceMatchRegionP00344375 faldo:begin ?templateMotifSequenceMatchBeginP00344376 .
?templateMotifSequenceMatchBeginP00344376 faldo:position ?templateMotifSequenceMatchBeginPositionP00344371 ;
faldo:reference isoform:P00344-1 .
?templateMotifSequenceProfileAlignmentOperationP00344377 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
?targetMotifMatch378 faldo:location ?targetMotifMatchRegionMatch379 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00488381 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00344MF_00488372 .
?targetMotifMatchRegionMatch379 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00488380 .
?targetMotifMatchRegionMatchBeginMF_00488380 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00488373 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00488381 edam:has_input signature:MF_00488 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00344MF_00488370, 1, (STRLEN(?templateMotifCigarP00344MF_00488370) - STRLEN(REPLACE(?templateMotifCigarP00344MF_00488370, CONCAT('^(?:-*[^-]){', STR(((233 - ?templateMotifSequenceMatchBeginPositionP00344371) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1382) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00344MF_00488372, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488372) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488372, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1382), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00344MF_00488372, 1, (STRLEN(?targetMotifMatchCigarP00344MF_00488372) - STRLEN(REPLACE(?targetMotifMatchCigarP00344MF_00488372, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1382), '}'), '')))), '[^-]', ''))) AS ?step2383) .
BIND(((?step2383 + ?targetMotifMatchRegionMatchBeginPositionMF_00488373) - 1) AS ?thisPositionOn132) .
BIND(?thisPositionOn132 AS ?thisPositionOn133) .
BIND(?this AS ?pfs3t384) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn132))) AS ?pfsb128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn133))) AS ?pfse129) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn132, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_00488a127')) AS ?annotation127) .
BIND(?this AS ?pfs126) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag385) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag385, ?UNBOUND_VARIABLE) AS ?case10) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag386) .
}
BIND(IF(BOUND(?tagPhosphotyrosine), ?caseWithTag386, ?UNBOUND_VARIABLE) AS ?case11) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism up:scientificName ?name387 .
FILTER (CONTAINS(?containsName388, ?name387)) .
BIND(?this AS ?case12) .
}
}
"xsd:string |
