| http://purl.uniprot.org/unirules/MF_00575#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:224671 up:source unirule:MF_00575 .
_:224672 up:source unirule:MF_00575 .
_:224673 up:source unirule:MF_00575 .
_:224674 up:source unirule:MF_00575 .
_:224675 up:source unirule:MF_00575 .
_:224676 up:source unirule:MF_00575 .
_:224677 up:source unirule:MF_00575 .
_:224678 up:source unirule:MF_00575 .
_:224679 up:source unirule:MF_00575 .
_:224680 up:source unirule:MF_00575 .
_:224681 up:source unirule:MF_00575 .
_:224682 up:source unirule:MF_00575 .
_:224683 up:source unirule:MF_00575 .
_:224684 up:source unirule:MF_00575 .
_:224685 up:source unirule:MF_00575 .
_:224686 up:source unirule:MF_00575 .
_:224687 up:source unirule:MF_00575 .
_:224688 up:source unirule:MF_00575 .
_:224689 up:source unirule:MF_00575 .
_:224690 up:source unirule:MF_00575 .
_:224691 up:source unirule:MF_00575 .
_:224692 up:source unirule:MF_00575 .
_:224693 up:source unirule:MF_00575 .
_:224694 up:source unirule:MF_00575 .
_:224695 up:source unirule:MF_00575 .
_:224696 up:source unirule:MF_00575 .
_:224697 up:source unirule:MF_00575 .
_:224698 up:source unirule:MF_00575 .
_:224699 up:source unirule:MF_00575 .
_:224700 up:source unirule:MF_00575 .
_:224701 up:source unirule:MF_00575 .
_:224702 up:source unirule:MF_00575 .
_:224703 up:source unirule:MF_00575 .
_:224704 up:source unirule:MF_00575 .
_:224705 up:source unirule:MF_00575 .
_:224706 up:source unirule:MF_00575 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation10 ;
up:classifiedWith GO:0008758 ,
GO:0009245 ,
GO:0019897 ,
GO:0030145 ,
keyword:1003 ,
keyword:378 ,
keyword:441 ,
keyword:443 ,
keyword:444 ,
keyword:464 ,
keyword:472 ,
keyword:479 ,
keyword:997 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.6.1.54' ;
up:fullName 'UDP-2,3-diacylglucosamine hydrolase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'UDP-2,3-diacylglucosamine diphosphatase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'lpxH' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Hydrolyzes the pyrophosphate bond of UDP-2,3-diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:29035 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 Mn(2+) ions per subunit in a binuclear metal center' .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Glycolipid biosynthesis; lipid IV(A) biosynthesis; lipid IV(A) from (3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] and UDP-N-acetyl-alpha-D-glucosamine: step 4/6.' .
?annotation8 a up:Subcellular_Location_Annotation .
?annotation8li9 up:cellularComponent ;
up:orientation ;
up:topology .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the LpxH family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf ?molecule16 .
?molecule16 rdfs:label 'substrate' .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:29035 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:29035 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:29035 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf chebi:29035 .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:29035 .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:29035 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf chebi:29035 .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf chebi:29035 .
?pfs75 up:annotation ?annotation76 .
?annotation76 faldo:begin ?pfsb77 ;
faldo:end ?pfse78 ;
up:ligand ?ligand79 ;
rdf:type up:Binding_Site_Annotation .
?pfsb77 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?pfse78 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?ligand79 rdfs:subClassOf ?molecule80 .
?molecule80 rdfs:label 'substrate' .
?pfs83 up:annotation ?annotation84 .
?annotation84 faldo:begin ?pfsb85 ;
faldo:end ?pfse86 ;
up:ligand ?ligand87 ;
rdf:type up:Binding_Site_Annotation .
?pfsb85 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?pfse86 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?ligand87 rdfs:subClassOf ?molecule88 .
?molecule88 rdfs:label 'substrate' .
?pfs91 up:annotation ?annotation92 .
?annotation92 faldo:begin ?pfsb93 ;
faldo:end ?pfse94 ;
up:ligand ?ligand95 ;
rdf:type up:Binding_Site_Annotation .
?pfsb93 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?pfse94 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?ligand95 rdfs:subClassOf ?molecule96 .
?molecule96 rdfs:label 'substrate' .
?pfs99 up:annotation ?annotation100 .
?annotation100 faldo:begin ?pfsb101 ;
faldo:end ?pfse102 ;
up:ligand ?ligand103 ;
rdf:type up:Binding_Site_Annotation .
?pfsb101 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?pfse102 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?ligand103 rdfs:subClassOf ?molecule104 .
?molecule104 rdfs:label 'substrate' .
?pfs107 up:annotation ?annotation108 .
?annotation108 faldo:begin ?pfsb109 ;
faldo:end ?pfse110 ;
up:ligand ?ligand111 ;
rdf:type up:Binding_Site_Annotation .
?pfsb109 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?pfse110 faldo:position ?thisPositionOn114 ;
rdf:type faldo:ExactPosition .
?ligand111 rdfs:subClassOf ?molecule112 .
?molecule112 rdfs:label 'substrate' .
_:224707 a rdf:Statement ;
up:attribution _:224671 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:224708 a rdf:Statement ;
up:attribution _:224672 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:224709 a rdf:Statement ;
up:attribution _:224673 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:224710 a rdf:Statement ;
up:attribution _:224674 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:224711 a rdf:Statement ;
up:attribution _:224675 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:224712 a rdf:Statement ;
up:attribution _:224676 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:224713 a rdf:Statement ;
up:attribution _:224677 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:224714 a rdf:Statement ;
up:attribution _:224678 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:224715 a rdf:Statement ;
up:attribution _:224679 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:224716 a rdf:Statement ;
up:attribution _:224680 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:224717 a rdf:Statement ;
up:attribution _:224681 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:224718 a rdf:Statement ;
up:attribution _:224682 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:224719 a rdf:Statement ;
up:attribution _:224683 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:441 .
_:224720 a rdf:Statement ;
up:attribution _:224684 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:444 .
_:224721 a rdf:Statement ;
up:attribution _:224685 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:443 .
_:224722 a rdf:Statement ;
up:attribution _:224686 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:464 .
_:224723 a rdf:Statement ;
up:attribution _:224687 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:224724 a rdf:Statement ;
up:attribution _:224688 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:224725 a rdf:Statement ;
up:attribution _:224689 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008758 .
_:224726 a rdf:Statement ;
up:attribution _:224690 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030145 .
_:224727 a rdf:Statement ;
up:attribution _:224691 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009245 .
_:224728 a rdf:Statement ;
up:attribution _:224692 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019897 .
_:224729 a rdf:Statement ;
up:source unirule:MF_00575 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:224730 a rdf:Statement ;
up:attribution _:224693 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:224731 a rdf:Statement ;
up:source unirule:MF_00575 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:224732 a rdf:Statement ;
up:attribution _:224694 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:224733 a rdf:Statement ;
up:source unirule:MF_00575 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:224734 a rdf:Statement ;
up:attribution _:224695 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:224735 a rdf:Statement ;
up:source unirule:MF_00575 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:224736 a rdf:Statement ;
up:attribution _:224696 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:224737 a rdf:Statement ;
up:source unirule:MF_00575 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:224738 a rdf:Statement ;
up:attribution _:224697 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:224739 a rdf:Statement ;
up:source unirule:MF_00575 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:224740 a rdf:Statement ;
up:attribution _:224698 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:224741 a rdf:Statement ;
up:source unirule:MF_00575 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:224742 a rdf:Statement ;
up:attribution _:224699 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:224743 a rdf:Statement ;
up:source unirule:MF_00575 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:224744 a rdf:Statement ;
up:attribution _:224700 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:224745 a rdf:Statement ;
up:source unirule:MF_00575 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:224746 a rdf:Statement ;
up:attribution _:224701 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:224747 a rdf:Statement ;
up:source unirule:MF_00575 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:224748 a rdf:Statement ;
up:attribution _:224702 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:224749 a rdf:Statement ;
up:source unirule:MF_00575 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:224750 a rdf:Statement ;
up:attribution _:224703 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:224751 a rdf:Statement ;
up:source unirule:MF_00575 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:224752 a rdf:Statement ;
up:attribution _:224704 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:224753 a rdf:Statement ;
up:source unirule:MF_00575 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
_:224754 a rdf:Statement ;
up:attribution _:224705 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
_:224755 a rdf:Statement ;
up:source unirule:MF_00575 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:224756 a rdf:Statement ;
up:attribution _:224706 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00575
#Rule MF_00575 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00575 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_00575a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00575a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00575a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00575a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00575a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00575a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00575a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00575a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch119 faldo:location ?templateMotifSequenceMatchRegionQ9I2V0120 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I2V0122 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I2V0MF_00575115 .
?templateMotifSequenceMatchRegionQ9I2V0120 faldo:begin ?templateMotifSequenceMatchBeginQ9I2V0121 .
?templateMotifSequenceMatchBeginQ9I2V0121 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I2V0116 ;
faldo:reference isoform:Q9I2V0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I2V0122 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
?targetMotifMatch123 faldo:location ?targetMotifMatchRegionMatch124 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00575126 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I2V0MF_00575117 .
?targetMotifMatchRegionMatch124 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00575125 .
?targetMotifMatchRegionMatchBeginMF_00575125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00575118 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00575126 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I2V0MF_00575115, 1, (STRLEN(?templateMotifCigarQ9I2V0MF_00575115) - STRLEN(REPLACE(?templateMotifCigarQ9I2V0MF_00575115, CONCAT('^(?:-*[^-]){', STR(((79 - ?templateMotifSequenceMatchBeginPositionQ9I2V0116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575117, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575117, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) .
BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_00575118) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I2V0MF_00575115, 1, (STRLEN(?templateMotifCigarQ9I2V0MF_00575115) - STRLEN(REPLACE(?templateMotifCigarQ9I2V0MF_00575115, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionQ9I2V0116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575117, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575117, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) .
BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_00575118) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse14) .
FILTER (REGEX('N[RH]', SUBSTR(?thisSequenceValue, ?thisPositionOn17, (?thisPositionOn18 - ?thisPositionOn17)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00575a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionQ9I2V0137 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I2V0139 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I2V0MF_00575132 .
?templateMotifSequenceMatchRegionQ9I2V0137 faldo:begin ?templateMotifSequenceMatchBeginQ9I2V0138 .
?templateMotifSequenceMatchBeginQ9I2V0138 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I2V0133 ;
faldo:reference isoform:Q9I2V0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I2V0139 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00575143 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I2V0MF_00575134 .
?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00575142 .
?targetMotifMatchRegionMatchBeginMF_00575142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00575135 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00575143 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I2V0MF_00575132, 1, (STRLEN(?templateMotifCigarQ9I2V0MF_00575132) - STRLEN(REPLACE(?templateMotifCigarQ9I2V0MF_00575132, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionQ9I2V0133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575134, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575134) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575134, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575134) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_00575135) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t146) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00575a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch151 faldo:location ?templateMotifSequenceMatchRegionQ9I2V0152 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I2V0154 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I2V0MF_00575147 .
?templateMotifSequenceMatchRegionQ9I2V0152 faldo:begin ?templateMotifSequenceMatchBeginQ9I2V0153 .
?templateMotifSequenceMatchBeginQ9I2V0153 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I2V0148 ;
faldo:reference isoform:Q9I2V0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I2V0154 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
?targetMotifMatch155 faldo:location ?targetMotifMatchRegionMatch156 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00575158 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I2V0MF_00575149 .
?targetMotifMatchRegionMatch156 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00575157 .
?targetMotifMatchRegionMatchBeginMF_00575157 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00575150 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00575158 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I2V0MF_00575147, 1, (STRLEN(?templateMotifCigarQ9I2V0MF_00575147) - STRLEN(REPLACE(?templateMotifCigarQ9I2V0MF_00575147, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionQ9I2V0148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575149, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575149) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575149, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575149) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) .
BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_00575150) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t161) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00575a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch166 faldo:location ?templateMotifSequenceMatchRegionQ9I2V0167 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I2V0169 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I2V0MF_00575162 .
?templateMotifSequenceMatchRegionQ9I2V0167 faldo:begin ?templateMotifSequenceMatchBeginQ9I2V0168 .
?templateMotifSequenceMatchBeginQ9I2V0168 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I2V0163 ;
faldo:reference isoform:Q9I2V0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I2V0169 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
?targetMotifMatch170 faldo:location ?targetMotifMatchRegionMatch171 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00575173 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I2V0MF_00575164 .
?targetMotifMatchRegionMatch171 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00575172 .
?targetMotifMatchRegionMatchBeginMF_00575172 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00575165 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00575173 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I2V0MF_00575162, 1, (STRLEN(?templateMotifCigarQ9I2V0MF_00575162) - STRLEN(REPLACE(?templateMotifCigarQ9I2V0MF_00575162, CONCAT('^(?:-*[^-]){', STR(((41 - ?templateMotifSequenceMatchBeginPositionQ9I2V0163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575164, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575164) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575164, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575164) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), '')))), '[^-]', ''))) AS ?step2175) .
BIND(((?step2175 + ?targetMotifMatchRegionMatchBeginPositionMF_00575165) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t176) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00575a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch181 faldo:location ?templateMotifSequenceMatchRegionQ9I2V0182 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I2V0184 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I2V0MF_00575177 .
?templateMotifSequenceMatchRegionQ9I2V0182 faldo:begin ?templateMotifSequenceMatchBeginQ9I2V0183 .
?templateMotifSequenceMatchBeginQ9I2V0183 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I2V0178 ;
faldo:reference isoform:Q9I2V0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I2V0184 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
?targetMotifMatch185 faldo:location ?targetMotifMatchRegionMatch186 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00575188 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I2V0MF_00575179 .
?targetMotifMatchRegionMatch186 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00575187 .
?targetMotifMatchRegionMatchBeginMF_00575187 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00575180 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00575188 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I2V0MF_00575177, 1, (STRLEN(?templateMotifCigarQ9I2V0MF_00575177) - STRLEN(REPLACE(?templateMotifCigarQ9I2V0MF_00575177, CONCAT('^(?:-*[^-]){', STR(((41 - ?templateMotifSequenceMatchBeginPositionQ9I2V0178) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575179, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575179) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575179, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575179) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), '')))), '[^-]', ''))) AS ?step2190) .
BIND(((?step2190 + ?targetMotifMatchRegionMatchBeginPositionMF_00575180) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t191) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00575a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch196 faldo:location ?templateMotifSequenceMatchRegionQ9I2V0197 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I2V0199 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I2V0MF_00575192 .
?templateMotifSequenceMatchRegionQ9I2V0197 faldo:begin ?templateMotifSequenceMatchBeginQ9I2V0198 .
?templateMotifSequenceMatchBeginQ9I2V0198 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I2V0193 ;
faldo:reference isoform:Q9I2V0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I2V0199 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
?targetMotifMatch200 faldo:location ?targetMotifMatchRegionMatch201 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00575203 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I2V0MF_00575194 .
?targetMotifMatchRegionMatch201 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00575202 .
?targetMotifMatchRegionMatchBeginMF_00575202 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00575195 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00575203 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I2V0MF_00575192, 1, (STRLEN(?templateMotifCigarQ9I2V0MF_00575192) - STRLEN(REPLACE(?templateMotifCigarQ9I2V0MF_00575192, CONCAT('^(?:-*[^-]){', STR(((79 - ?templateMotifSequenceMatchBeginPositionQ9I2V0193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1204) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575194, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575194) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575194, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575194) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), '')))), '[^-]', ''))) AS ?step2205) .
BIND(((?step2205 + ?targetMotifMatchRegionMatchBeginPositionMF_00575195) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t206) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00575a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch211 faldo:location ?templateMotifSequenceMatchRegionQ9I2V0212 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I2V0214 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I2V0MF_00575207 .
?templateMotifSequenceMatchRegionQ9I2V0212 faldo:begin ?templateMotifSequenceMatchBeginQ9I2V0213 .
?templateMotifSequenceMatchBeginQ9I2V0213 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I2V0208 ;
faldo:reference isoform:Q9I2V0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I2V0214 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
?targetMotifMatch215 faldo:location ?targetMotifMatchRegionMatch216 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00575218 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I2V0MF_00575209 .
?targetMotifMatchRegionMatch216 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00575217 .
?targetMotifMatchRegionMatchBeginMF_00575217 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00575210 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00575218 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I2V0MF_00575207, 1, (STRLEN(?templateMotifCigarQ9I2V0MF_00575207) - STRLEN(REPLACE(?templateMotifCigarQ9I2V0MF_00575207, CONCAT('^(?:-*[^-]){', STR(((114 - ?templateMotifSequenceMatchBeginPositionQ9I2V0208) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1219) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575209, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575209) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575209, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575209) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), '')))), '[^-]', ''))) AS ?step2220) .
BIND(((?step2220 + ?targetMotifMatchRegionMatchBeginPositionMF_00575210) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t221) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00575a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch226 faldo:location ?templateMotifSequenceMatchRegionQ9I2V0227 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I2V0229 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I2V0MF_00575222 .
?templateMotifSequenceMatchRegionQ9I2V0227 faldo:begin ?templateMotifSequenceMatchBeginQ9I2V0228 .
?templateMotifSequenceMatchBeginQ9I2V0228 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I2V0223 ;
faldo:reference isoform:Q9I2V0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I2V0229 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
?targetMotifMatch230 faldo:location ?targetMotifMatchRegionMatch231 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00575233 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I2V0MF_00575224 .
?targetMotifMatchRegionMatch231 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00575232 .
?targetMotifMatchRegionMatchBeginMF_00575232 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00575225 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00575233 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I2V0MF_00575222, 1, (STRLEN(?templateMotifCigarQ9I2V0MF_00575222) - STRLEN(REPLACE(?templateMotifCigarQ9I2V0MF_00575222, CONCAT('^(?:-*[^-]){', STR(((195 - ?templateMotifSequenceMatchBeginPositionQ9I2V0223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575224, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575224) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575224, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575224) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) .
BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_00575225) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t236) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00575a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch241 faldo:location ?templateMotifSequenceMatchRegionQ9I2V0242 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I2V0244 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I2V0MF_00575237 .
?templateMotifSequenceMatchRegionQ9I2V0242 faldo:begin ?templateMotifSequenceMatchBeginQ9I2V0243 .
?templateMotifSequenceMatchBeginQ9I2V0243 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I2V0238 ;
faldo:reference isoform:Q9I2V0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I2V0244 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
?targetMotifMatch245 faldo:location ?targetMotifMatchRegionMatch246 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00575248 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I2V0MF_00575239 .
?targetMotifMatchRegionMatch246 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00575247 .
?targetMotifMatchRegionMatchBeginMF_00575247 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00575240 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00575248 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I2V0MF_00575237, 1, (STRLEN(?templateMotifCigarQ9I2V0MF_00575237) - STRLEN(REPLACE(?templateMotifCigarQ9I2V0MF_00575237, CONCAT('^(?:-*[^-]){', STR(((197 - ?templateMotifSequenceMatchBeginPositionQ9I2V0238) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1249) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575239, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575239) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575239, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575239) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), '')))), '[^-]', ''))) AS ?step2250) .
BIND(((?step2250 + ?targetMotifMatchRegionMatchBeginPositionMF_00575240) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs1t251) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00575a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch256 faldo:location ?templateMotifSequenceMatchRegionQ9I2V0257 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I2V0259 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I2V0MF_00575252 .
?templateMotifSequenceMatchRegionQ9I2V0257 faldo:begin ?templateMotifSequenceMatchBeginQ9I2V0258 .
?templateMotifSequenceMatchBeginQ9I2V0258 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I2V0253 ;
faldo:reference isoform:Q9I2V0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I2V0259 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
?targetMotifMatch260 faldo:location ?targetMotifMatchRegionMatch261 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00575263 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I2V0MF_00575254 .
?targetMotifMatchRegionMatch261 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00575262 .
?targetMotifMatchRegionMatchBeginMF_00575262 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00575255 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00575263 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I2V0MF_00575252, 1, (STRLEN(?templateMotifCigarQ9I2V0MF_00575252) - STRLEN(REPLACE(?templateMotifCigarQ9I2V0MF_00575252, CONCAT('^(?:-*[^-]){', STR(((122 - ?templateMotifSequenceMatchBeginPositionQ9I2V0253) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1264) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575254, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575254) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575254, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575254) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), '')))), '[^-]', ''))) AS ?step2265) .
BIND(((?step2265 + ?targetMotifMatchRegionMatchBeginPositionMF_00575255) - 1) AS ?thisPositionOn81) .
BIND(?thisPositionOn81 AS ?thisPositionOn82) .
BIND(?this AS ?pfs1t266) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfse78) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn81, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00575a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch271 faldo:location ?templateMotifSequenceMatchRegionQ9I2V0272 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I2V0274 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I2V0MF_00575267 .
?templateMotifSequenceMatchRegionQ9I2V0272 faldo:begin ?templateMotifSequenceMatchBeginQ9I2V0273 .
?templateMotifSequenceMatchBeginQ9I2V0273 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I2V0268 ;
faldo:reference isoform:Q9I2V0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I2V0274 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
?targetMotifMatch275 faldo:location ?targetMotifMatchRegionMatch276 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00575278 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I2V0MF_00575269 .
?targetMotifMatchRegionMatch276 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00575277 .
?targetMotifMatchRegionMatchBeginMF_00575277 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00575270 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00575278 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I2V0MF_00575267, 1, (STRLEN(?templateMotifCigarQ9I2V0MF_00575267) - STRLEN(REPLACE(?templateMotifCigarQ9I2V0MF_00575267, CONCAT('^(?:-*[^-]){', STR(((160 - ?templateMotifSequenceMatchBeginPositionQ9I2V0268) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1279) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575269, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575269) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575269, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575269) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), '')))), '[^-]', ''))) AS ?step2280) .
BIND(((?step2280 + ?targetMotifMatchRegionMatchBeginPositionMF_00575270) - 1) AS ?thisPositionOn89) .
BIND(?thisPositionOn89 AS ?thisPositionOn90) .
BIND(?this AS ?pfs1t281) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse86) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn89, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00575a84')) AS ?annotation84) .
BIND(?this AS ?pfs83) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch286 faldo:location ?templateMotifSequenceMatchRegionQ9I2V0287 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I2V0289 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I2V0MF_00575282 .
?templateMotifSequenceMatchRegionQ9I2V0287 faldo:begin ?templateMotifSequenceMatchBeginQ9I2V0288 .
?templateMotifSequenceMatchBeginQ9I2V0288 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I2V0283 ;
faldo:reference isoform:Q9I2V0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I2V0289 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
?targetMotifMatch290 faldo:location ?targetMotifMatchRegionMatch291 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00575293 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I2V0MF_00575284 .
?targetMotifMatchRegionMatch291 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00575292 .
?targetMotifMatchRegionMatchBeginMF_00575292 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00575285 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00575293 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I2V0MF_00575282, 1, (STRLEN(?templateMotifCigarQ9I2V0MF_00575282) - STRLEN(REPLACE(?templateMotifCigarQ9I2V0MF_00575282, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionQ9I2V0283) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1294) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575284, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575284) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575284, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575284) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), '')))), '[^-]', ''))) AS ?step2295) .
BIND(((?step2295 + ?targetMotifMatchRegionMatchBeginPositionMF_00575285) - 1) AS ?thisPositionOn97) .
BIND(?thisPositionOn97 AS ?thisPositionOn98) .
BIND(?this AS ?pfs1t296) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfsb93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfse94) .
FILTER (REGEX('[TKNQED]', SUBSTR(?thisSequenceValue, ?thisPositionOn97, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00575a92')) AS ?annotation92) .
BIND(?this AS ?pfs91) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch301 faldo:location ?templateMotifSequenceMatchRegionQ9I2V0302 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I2V0304 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I2V0MF_00575297 .
?templateMotifSequenceMatchRegionQ9I2V0302 faldo:begin ?templateMotifSequenceMatchBeginQ9I2V0303 .
?templateMotifSequenceMatchBeginQ9I2V0303 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I2V0298 ;
faldo:reference isoform:Q9I2V0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I2V0304 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
?targetMotifMatch305 faldo:location ?targetMotifMatchRegionMatch306 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00575308 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I2V0MF_00575299 .
?targetMotifMatchRegionMatch306 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00575307 .
?targetMotifMatchRegionMatchBeginMF_00575307 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00575300 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00575308 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I2V0MF_00575297, 1, (STRLEN(?templateMotifCigarQ9I2V0MF_00575297) - STRLEN(REPLACE(?templateMotifCigarQ9I2V0MF_00575297, CONCAT('^(?:-*[^-]){', STR(((167 - ?templateMotifSequenceMatchBeginPositionQ9I2V0298) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1309) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575299, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575299) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575299, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575299) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), '')))), '[^-]', ''))) AS ?step2310) .
BIND(((?step2310 + ?targetMotifMatchRegionMatchBeginPositionMF_00575300) - 1) AS ?thisPositionOn105) .
BIND(?thisPositionOn105 AS ?thisPositionOn106) .
BIND(?this AS ?pfs1t311) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse102) .
FILTER (REGEX('[KRQN]', SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00575a100')) AS ?annotation100) .
BIND(?this AS ?pfs99) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch316 faldo:location ?templateMotifSequenceMatchRegionQ9I2V0317 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9I2V0319 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9I2V0MF_00575312 .
?templateMotifSequenceMatchRegionQ9I2V0317 faldo:begin ?templateMotifSequenceMatchBeginQ9I2V0318 .
?templateMotifSequenceMatchBeginQ9I2V0318 faldo:position ?templateMotifSequenceMatchBeginPositionQ9I2V0313 ;
faldo:reference isoform:Q9I2V0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9I2V0319 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
?targetMotifMatch320 faldo:location ?targetMotifMatchRegionMatch321 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00575323 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9I2V0MF_00575314 .
?targetMotifMatchRegionMatch321 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00575322 .
?targetMotifMatchRegionMatchBeginMF_00575322 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00575315 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00575323 edam:has_input signature:MF_00575 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9I2V0MF_00575312, 1, (STRLEN(?templateMotifCigarQ9I2V0MF_00575312) - STRLEN(REPLACE(?templateMotifCigarQ9I2V0MF_00575312, CONCAT('^(?:-*[^-]){', STR(((195 - ?templateMotifSequenceMatchBeginPositionQ9I2V0313) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1324) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575314, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575314) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9I2V0MF_00575314, 1, (STRLEN(?targetMotifMatchCigarQ9I2V0MF_00575314) - STRLEN(REPLACE(?targetMotifMatchCigarQ9I2V0MF_00575314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), '')))), '[^-]', ''))) AS ?step2325) .
BIND(((?step2325 + ?targetMotifMatchRegionMatchBeginPositionMF_00575315) - 1) AS ?thisPositionOn113) .
BIND(?thisPositionOn113 AS ?thisPositionOn114) .
BIND(?this AS ?pfs1t326) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfsb109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfse110) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn113, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00575a108')) AS ?annotation108) .
BIND(?this AS ?pfs107) .
}
}
"xsd:string |
