| http://purl.uniprot.org/unirules/MF_00581#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:226979 up:source unirule:MF_00581 .
_:226980 up:source unirule:MF_00581 .
_:226981 up:source unirule:MF_00581 .
_:226982 up:source unirule:MF_00581 .
_:226983 up:source unirule:MF_00581 .
_:226984 up:source unirule:MF_00581 .
_:226985 up:source unirule:MF_00581 .
_:226986 up:source unirule:MF_00581 .
_:226987 up:source unirule:MF_00581 .
_:226988 up:source unirule:MF_00581 .
_:226989 up:source unirule:MF_00581 .
_:226990 up:source unirule:MF_00581 .
_:226991 up:source unirule:MF_00581 .
_:226992 up:source unirule:MF_00581 .
_:226993 up:source unirule:MF_00581 .
_:226994 up:source unirule:MF_00581 .
_:226995 up:source unirule:MF_00581 .
_:226996 up:source unirule:MF_00581 .
_:226997 up:source unirule:MF_00581 .
_:226998 up:source unirule:MF_00581 .
_:226999 up:source unirule:MF_00581 .
_:227000 up:source unirule:MF_00581 .
_:227001 up:source unirule:MF_00581 .
_:227002 up:source unirule:MF_00581 .
_:227003 up:source unirule:MF_00581 .
_:227004 up:source unirule:MF_00581 .
_:227005 up:source unirule:MF_00581 .
_:227006 up:source unirule:MF_00581 .
_:227007 up:source unirule:MF_00581 .
_:227008 up:source unirule:MF_00581 .
_:227009 up:source unirule:MF_00581 .
_:227010 up:source unirule:MF_00581 .
_:227011 up:source unirule:MF_00581 .
_:227012 up:source unirule:MF_00581 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0004055 ,
GO:0005524 ,
GO:0005737 ,
GO:0006526 ,
keyword:28 ,
keyword:436 ,
keyword:547 ,
keyword:55 ,
keyword:67 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.3.4.5' ;
up:fullName 'Argininosuccinate synthase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Citrulline--aspartate ligase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'argG' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-arginine biosynthesis; L-arginine from L-ornithine and carbamoyl phosphate: step 2/3.' .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the argininosuccinate synthase family. Type 2 subfamily.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:30616 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:30616 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:57743 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:30616 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:30616 .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:29991 .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf chebi:57743 .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
up:ligand ?ligand63 ;
rdf:type up:Binding_Site_Annotation .
?pfsb61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand63 rdfs:subClassOf chebi:29991 .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
up:ligand ?ligand70 ;
rdf:type up:Binding_Site_Annotation .
?pfsb68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?ligand70 rdfs:subClassOf chebi:30616 .
?pfs73 up:annotation ?annotation74 .
?annotation74 faldo:begin ?pfsb75 ;
faldo:end ?pfse76 ;
up:ligand ?ligand77 ;
rdf:type up:Binding_Site_Annotation .
?pfsb75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfse76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?ligand77 rdfs:subClassOf chebi:29991 .
?pfs80 up:annotation ?annotation81 .
?annotation81 faldo:begin ?pfsb82 ;
faldo:end ?pfse83 ;
up:ligand ?ligand84 ;
rdf:type up:Binding_Site_Annotation .
?pfsb82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfse83 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?ligand84 rdfs:subClassOf chebi:57743 .
?pfs87 up:annotation ?annotation88 .
?annotation88 faldo:begin ?pfsb89 ;
faldo:end ?pfse90 ;
up:ligand ?ligand91 ;
rdf:type up:Binding_Site_Annotation .
?pfsb89 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfse90 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?ligand91 rdfs:subClassOf chebi:57743 .
?pfs94 up:annotation ?annotation95 .
?annotation95 faldo:begin ?pfsb96 ;
faldo:end ?pfse97 ;
up:ligand ?ligand98 ;
rdf:type up:Binding_Site_Annotation .
?pfsb96 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?pfse97 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?ligand98 rdfs:subClassOf chebi:30616 .
?pfs101 up:annotation ?annotation102 .
?annotation102 faldo:begin ?pfsb103 ;
faldo:end ?pfse104 ;
up:ligand ?ligand105 ;
rdf:type up:Binding_Site_Annotation .
?pfsb103 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?pfse104 faldo:position ?thisPositionOn107 ;
rdf:type faldo:ExactPosition .
?ligand105 rdfs:subClassOf chebi:57743 .
?pfs108 up:annotation ?annotation109 .
?annotation109 faldo:begin ?pfsb110 ;
faldo:end ?pfse111 ;
up:ligand ?ligand112 ;
rdf:type up:Binding_Site_Annotation .
?pfsb110 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?pfse111 faldo:position ?thisPositionOn114 ;
rdf:type faldo:ExactPosition .
?ligand112 rdfs:subClassOf chebi:57743 .
?pfs115 up:annotation ?annotation116 .
?annotation116 faldo:begin ?pfsb117 ;
faldo:end ?pfse118 ;
up:ligand ?ligand119 ;
rdf:type up:Binding_Site_Annotation .
?pfsb117 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?pfse118 faldo:position ?thisPositionOn121 ;
rdf:type faldo:ExactPosition .
?ligand119 rdfs:subClassOf chebi:57743 .
_:227013 a rdf:Statement ;
up:attribution _:226979 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:227014 a rdf:Statement ;
up:attribution _:226980 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:227015 a rdf:Statement ;
up:attribution _:226981 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:227016 a rdf:Statement ;
up:attribution _:226982 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:227017 a rdf:Statement ;
up:attribution _:226983 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:227018 a rdf:Statement ;
up:attribution _:226984 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:227019 a rdf:Statement ;
up:attribution _:226985 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:227020 a rdf:Statement ;
up:attribution _:226986 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:227021 a rdf:Statement ;
up:attribution _:226987 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:227022 a rdf:Statement ;
up:attribution _:226988 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:227023 a rdf:Statement ;
up:attribution _:226989 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:55 .
_:227024 a rdf:Statement ;
up:attribution _:226990 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:227025 a rdf:Statement ;
up:attribution _:226991 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:227026 a rdf:Statement ;
up:attribution _:226992 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:227027 a rdf:Statement ;
up:attribution _:226993 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004055 .
_:227028 a rdf:Statement ;
up:attribution _:226994 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:227029 a rdf:Statement ;
up:attribution _:226995 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006526 .
_:227030 a rdf:Statement ;
up:attribution _:226996 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:227031 a rdf:Statement ;
up:source unirule:MF_00581 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:227032 a rdf:Statement ;
up:attribution _:226997 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:227033 a rdf:Statement ;
up:source unirule:MF_00581 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:227034 a rdf:Statement ;
up:attribution _:226998 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:227035 a rdf:Statement ;
up:source unirule:MF_00581 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:227036 a rdf:Statement ;
up:attribution _:226999 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:227037 a rdf:Statement ;
up:source unirule:MF_00581 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:227038 a rdf:Statement ;
up:attribution _:227000 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:227039 a rdf:Statement ;
up:source unirule:MF_00581 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:227040 a rdf:Statement ;
up:attribution _:227001 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:227041 a rdf:Statement ;
up:source unirule:MF_00581 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:227042 a rdf:Statement ;
up:attribution _:227002 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:227043 a rdf:Statement ;
up:source unirule:MF_00581 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:227044 a rdf:Statement ;
up:attribution _:227003 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:227045 a rdf:Statement ;
up:source unirule:MF_00581 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:227046 a rdf:Statement ;
up:attribution _:227004 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:227047 a rdf:Statement ;
up:source unirule:MF_00581 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:227048 a rdf:Statement ;
up:attribution _:227005 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:227049 a rdf:Statement ;
up:source unirule:MF_00581 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:227050 a rdf:Statement ;
up:attribution _:227006 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:227051 a rdf:Statement ;
up:source unirule:MF_00581 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:227052 a rdf:Statement ;
up:attribution _:227007 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:227053 a rdf:Statement ;
up:source unirule:MF_00581 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:227054 a rdf:Statement ;
up:attribution _:227008 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:227055 a rdf:Statement ;
up:source unirule:MF_00581 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:227056 a rdf:Statement ;
up:attribution _:227009 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:227057 a rdf:Statement ;
up:source unirule:MF_00581 ;
rdf:subject ?pfs101 ;
rdf:predicate up:annotation ;
rdf:object ?annotation102 .
_:227058 a rdf:Statement ;
up:attribution _:227010 ;
rdf:subject ?pfs101 ;
rdf:predicate up:annotation ;
rdf:object ?annotation102 .
_:227059 a rdf:Statement ;
up:source unirule:MF_00581 ;
rdf:subject ?pfs108 ;
rdf:predicate up:annotation ;
rdf:object ?annotation109 .
_:227060 a rdf:Statement ;
up:attribution _:227011 ;
rdf:subject ?pfs108 ;
rdf:predicate up:annotation ;
rdf:object ?annotation109 .
_:227061 a rdf:Statement ;
up:source unirule:MF_00581 ;
rdf:subject ?pfs115 ;
rdf:predicate up:annotation ;
rdf:object ?annotation116 .
_:227062 a rdf:Statement ;
up:attribution _:227012 ;
rdf:subject ?pfs115 ;
rdf:predicate up:annotation ;
rdf:object ?annotation116 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00581
#Rule MF_00581 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-11-05
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00581 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00581a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00581a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00581a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00581a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00581a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00581a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00581a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch126 faldo:location ?templateMotifSequenceMatchRegionP0A6E4127 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6E4129 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6E4MF_00581122 .
?templateMotifSequenceMatchRegionP0A6E4127 faldo:begin ?templateMotifSequenceMatchBeginP0A6E4128 .
?templateMotifSequenceMatchBeginP0A6E4128 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6E4123 ;
faldo:reference isoform:P0A6E4-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6E4129 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
?targetMotifMatch130 faldo:location ?targetMotifMatchRegionMatch131 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00581133 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6E4MF_00581124 .
?targetMotifMatchRegionMatch131 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00581132 .
?targetMotifMatchRegionMatchBeginMF_00581132 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00581125 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00581133 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6E4MF_00581122, 1, (STRLEN(?templateMotifCigarP0A6E4MF_00581122) - STRLEN(REPLACE(?templateMotifCigarP0A6E4MF_00581122, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP0A6E4123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581124, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581124) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581124, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581124) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) .
BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_00581125) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6E4MF_00581122, 1, (STRLEN(?templateMotifCigarP0A6E4MF_00581122) - STRLEN(REPLACE(?templateMotifCigarP0A6E4MF_00581122, CONCAT('^(?:-*[^-]){', STR(((25 - ?templateMotifSequenceMatchBeginPositionP0A6E4123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581124, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581124) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581124, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581124) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) .
BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_00581125) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t138) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((BOUND(?thisPositionOn15) && BOUND(?thisPositionOn16))) .
BIND(URI(CONCAT(STR(?this), '#MF_00581a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch143 faldo:location ?templateMotifSequenceMatchRegionP0A6E4144 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6E4146 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6E4MF_00581139 .
?templateMotifSequenceMatchRegionP0A6E4144 faldo:begin ?templateMotifSequenceMatchBeginP0A6E4145 .
?templateMotifSequenceMatchBeginP0A6E4145 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6E4140 ;
faldo:reference isoform:P0A6E4-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6E4146 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
?targetMotifMatch147 faldo:location ?targetMotifMatchRegionMatch148 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00581150 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6E4MF_00581141 .
?targetMotifMatchRegionMatch148 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00581149 .
?targetMotifMatchRegionMatchBeginMF_00581149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00581142 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00581150 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6E4MF_00581139, 1, (STRLEN(?templateMotifCigarP0A6E4MF_00581139) - STRLEN(REPLACE(?templateMotifCigarP0A6E4MF_00581139, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionP0A6E4140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581141, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581141) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581141, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581141) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) .
BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_00581142) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t153) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'A')) .
BIND(URI(CONCAT(STR(?this), '#MF_00581a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionP0A6E4159 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6E4161 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6E4MF_00581154 .
?templateMotifSequenceMatchRegionP0A6E4159 faldo:begin ?templateMotifSequenceMatchBeginP0A6E4160 .
?templateMotifSequenceMatchBeginP0A6E4160 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6E4155 ;
faldo:reference isoform:P0A6E4-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6E4161 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00581165 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6E4MF_00581156 .
?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00581164 .
?targetMotifMatchRegionMatchBeginMF_00581164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00581157 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00581165 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6E4MF_00581154, 1, (STRLEN(?templateMotifCigarP0A6E4MF_00581154) - STRLEN(REPLACE(?templateMotifCigarP0A6E4MF_00581154, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionP0A6E4155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581156, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581156) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581156, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581156) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) .
BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_00581157) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t168) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00581a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch173 faldo:location ?templateMotifSequenceMatchRegionP0A6E4174 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6E4176 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6E4MF_00581169 .
?templateMotifSequenceMatchRegionP0A6E4174 faldo:begin ?templateMotifSequenceMatchBeginP0A6E4175 .
?templateMotifSequenceMatchBeginP0A6E4175 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6E4170 ;
faldo:reference isoform:P0A6E4-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6E4176 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
?targetMotifMatch177 faldo:location ?targetMotifMatchRegionMatch178 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00581180 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6E4MF_00581171 .
?targetMotifMatchRegionMatch178 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00581179 .
?targetMotifMatchRegionMatchBeginMF_00581179 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00581172 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00581180 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6E4MF_00581169, 1, (STRLEN(?templateMotifCigarP0A6E4MF_00581169) - STRLEN(REPLACE(?templateMotifCigarP0A6E4MF_00581169, CONCAT('^(?:-*[^-]){', STR(((129 - ?templateMotifSequenceMatchBeginPositionP0A6E4170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581171, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581171) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581171, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581171) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) .
BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_00581172) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t183) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00581a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch188 faldo:location ?templateMotifSequenceMatchRegionP0A6E4189 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6E4191 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6E4MF_00581184 .
?templateMotifSequenceMatchRegionP0A6E4189 faldo:begin ?templateMotifSequenceMatchBeginP0A6E4190 .
?templateMotifSequenceMatchBeginP0A6E4190 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6E4185 ;
faldo:reference isoform:P0A6E4-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6E4191 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
?targetMotifMatch192 faldo:location ?targetMotifMatchRegionMatch193 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00581195 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6E4MF_00581186 .
?targetMotifMatchRegionMatch193 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00581194 .
?targetMotifMatchRegionMatchBeginMF_00581194 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00581187 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00581195 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6E4MF_00581184, 1, (STRLEN(?templateMotifCigarP0A6E4MF_00581184) - STRLEN(REPLACE(?templateMotifCigarP0A6E4MF_00581184, CONCAT('^(?:-*[^-]){', STR(((131 - ?templateMotifSequenceMatchBeginPositionP0A6E4185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581186, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581186) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581186, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581186) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), '')))), '[^-]', ''))) AS ?step2197) .
BIND(((?step2197 + ?targetMotifMatchRegionMatchBeginPositionMF_00581187) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t198) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_00581a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch203 faldo:location ?templateMotifSequenceMatchRegionP0A6E4204 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6E4206 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6E4MF_00581199 .
?templateMotifSequenceMatchRegionP0A6E4204 faldo:begin ?templateMotifSequenceMatchBeginP0A6E4205 .
?templateMotifSequenceMatchBeginP0A6E4205 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6E4200 ;
faldo:reference isoform:P0A6E4-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6E4206 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
?targetMotifMatch207 faldo:location ?targetMotifMatchRegionMatch208 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00581210 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6E4MF_00581201 .
?targetMotifMatchRegionMatch208 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00581209 .
?targetMotifMatchRegionMatchBeginMF_00581209 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00581202 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00581210 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6E4MF_00581199, 1, (STRLEN(?templateMotifCigarP0A6E4MF_00581199) - STRLEN(REPLACE(?templateMotifCigarP0A6E4MF_00581199, CONCAT('^(?:-*[^-]){', STR(((131 - ?templateMotifSequenceMatchBeginPositionP0A6E4200) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1211) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581201, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581201) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581201, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581201) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), '')))), '[^-]', ''))) AS ?step2212) .
BIND(((?step2212 + ?targetMotifMatchRegionMatchBeginPositionMF_00581202) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t213) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_00581a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch218 faldo:location ?templateMotifSequenceMatchRegionP0A6E4219 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6E4221 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6E4MF_00581214 .
?templateMotifSequenceMatchRegionP0A6E4219 faldo:begin ?templateMotifSequenceMatchBeginP0A6E4220 .
?templateMotifSequenceMatchBeginP0A6E4220 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6E4215 ;
faldo:reference isoform:P0A6E4-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6E4221 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
?targetMotifMatch222 faldo:location ?targetMotifMatchRegionMatch223 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00581225 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6E4MF_00581216 .
?targetMotifMatchRegionMatch223 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00581224 .
?targetMotifMatchRegionMatchBeginMF_00581224 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00581217 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00581225 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6E4MF_00581214, 1, (STRLEN(?templateMotifCigarP0A6E4MF_00581214) - STRLEN(REPLACE(?templateMotifCigarP0A6E4MF_00581214, CONCAT('^(?:-*[^-]){', STR(((135 - ?templateMotifSequenceMatchBeginPositionP0A6E4215) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1226) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581216, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581216) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581216, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581216) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), '')))), '[^-]', ''))) AS ?step2227) .
BIND(((?step2227 + ?targetMotifMatchRegionMatchBeginPositionMF_00581217) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs1t228) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00581a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch233 faldo:location ?templateMotifSequenceMatchRegionP0A6E4234 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6E4236 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6E4MF_00581229 .
?templateMotifSequenceMatchRegionP0A6E4234 faldo:begin ?templateMotifSequenceMatchBeginP0A6E4235 .
?templateMotifSequenceMatchBeginP0A6E4235 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6E4230 ;
faldo:reference isoform:P0A6E4-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6E4236 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
?targetMotifMatch237 faldo:location ?targetMotifMatchRegionMatch238 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00581240 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6E4MF_00581231 .
?targetMotifMatchRegionMatch238 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00581239 .
?targetMotifMatchRegionMatchBeginMF_00581239 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00581232 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00581240 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6E4MF_00581229, 1, (STRLEN(?templateMotifCigarP0A6E4MF_00581229) - STRLEN(REPLACE(?templateMotifCigarP0A6E4MF_00581229, CONCAT('^(?:-*[^-]){', STR(((135 - ?templateMotifSequenceMatchBeginPositionP0A6E4230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1241) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581231, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581231) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581231, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581231) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), '')))), '[^-]', ''))) AS ?step2242) .
BIND(((?step2242 + ?targetMotifMatchRegionMatchBeginPositionMF_00581232) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs1t243) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00581a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch248 faldo:location ?templateMotifSequenceMatchRegionP0A6E4249 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6E4251 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6E4MF_00581244 .
?templateMotifSequenceMatchRegionP0A6E4249 faldo:begin ?templateMotifSequenceMatchBeginP0A6E4250 .
?templateMotifSequenceMatchBeginP0A6E4250 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6E4245 ;
faldo:reference isoform:P0A6E4-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6E4251 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
?targetMotifMatch252 faldo:location ?targetMotifMatchRegionMatch253 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00581255 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6E4MF_00581246 .
?targetMotifMatchRegionMatch253 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00581254 .
?targetMotifMatchRegionMatchBeginMF_00581254 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00581247 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00581255 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6E4MF_00581244, 1, (STRLEN(?templateMotifCigarP0A6E4MF_00581244) - STRLEN(REPLACE(?templateMotifCigarP0A6E4MF_00581244, CONCAT('^(?:-*[^-]){', STR(((136 - ?templateMotifSequenceMatchBeginPositionP0A6E4245) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1256) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581246, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581246) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581246, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581246) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), '')))), '[^-]', ''))) AS ?step2257) .
BIND(((?step2257 + ?targetMotifMatchRegionMatchBeginPositionMF_00581247) - 1) AS ?thisPositionOn71) .
BIND(?thisPositionOn71 AS ?thisPositionOn72) .
BIND(?this AS ?pfs1t258) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse69) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00581a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch263 faldo:location ?templateMotifSequenceMatchRegionP0A6E4264 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6E4266 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6E4MF_00581259 .
?templateMotifSequenceMatchRegionP0A6E4264 faldo:begin ?templateMotifSequenceMatchBeginP0A6E4265 .
?templateMotifSequenceMatchBeginP0A6E4265 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6E4260 ;
faldo:reference isoform:P0A6E4-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6E4266 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
?targetMotifMatch267 faldo:location ?targetMotifMatchRegionMatch268 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00581270 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6E4MF_00581261 .
?targetMotifMatchRegionMatch268 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00581269 .
?targetMotifMatchRegionMatchBeginMF_00581269 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00581262 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00581270 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6E4MF_00581259, 1, (STRLEN(?templateMotifCigarP0A6E4MF_00581259) - STRLEN(REPLACE(?templateMotifCigarP0A6E4MF_00581259, CONCAT('^(?:-*[^-]){', STR(((136 - ?templateMotifSequenceMatchBeginPositionP0A6E4260) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1271) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581261, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581261) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581261, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581261) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), '')))), '[^-]', ''))) AS ?step2272) .
BIND(((?step2272 + ?targetMotifMatchRegionMatchBeginPositionMF_00581262) - 1) AS ?thisPositionOn78) .
BIND(?thisPositionOn78 AS ?thisPositionOn79) .
BIND(?this AS ?pfs1t273) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse76) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00581a74')) AS ?annotation74) .
BIND(?this AS ?pfs73) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch278 faldo:location ?templateMotifSequenceMatchRegionP0A6E4279 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6E4281 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6E4MF_00581274 .
?templateMotifSequenceMatchRegionP0A6E4279 faldo:begin ?templateMotifSequenceMatchBeginP0A6E4280 .
?templateMotifSequenceMatchBeginP0A6E4280 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6E4275 ;
faldo:reference isoform:P0A6E4-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6E4281 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
?targetMotifMatch282 faldo:location ?targetMotifMatchRegionMatch283 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00581285 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6E4MF_00581276 .
?targetMotifMatchRegionMatch283 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00581284 .
?targetMotifMatchRegionMatchBeginMF_00581284 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00581277 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00581285 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6E4MF_00581274, 1, (STRLEN(?templateMotifCigarP0A6E4MF_00581274) - STRLEN(REPLACE(?templateMotifCigarP0A6E4MF_00581274, CONCAT('^(?:-*[^-]){', STR(((139 - ?templateMotifSequenceMatchBeginPositionP0A6E4275) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1286) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581276, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581276) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1286), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581276, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581276) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1286), '}'), '')))), '[^-]', ''))) AS ?step2287) .
BIND(((?step2287 + ?targetMotifMatchRegionMatchBeginPositionMF_00581277) - 1) AS ?thisPositionOn85) .
BIND(?thisPositionOn85 AS ?thisPositionOn86) .
BIND(?this AS ?pfs1t288) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse83) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn85, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00581a81')) AS ?annotation81) .
BIND(?this AS ?pfs80) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch293 faldo:location ?templateMotifSequenceMatchRegionP0A6E4294 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6E4296 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6E4MF_00581289 .
?templateMotifSequenceMatchRegionP0A6E4294 faldo:begin ?templateMotifSequenceMatchBeginP0A6E4295 .
?templateMotifSequenceMatchBeginP0A6E4295 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6E4290 ;
faldo:reference isoform:P0A6E4-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6E4296 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
?targetMotifMatch297 faldo:location ?targetMotifMatchRegionMatch298 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00581300 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6E4MF_00581291 .
?targetMotifMatchRegionMatch298 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00581299 .
?targetMotifMatchRegionMatchBeginMF_00581299 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00581292 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00581300 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6E4MF_00581289, 1, (STRLEN(?templateMotifCigarP0A6E4MF_00581289) - STRLEN(REPLACE(?templateMotifCigarP0A6E4MF_00581289, CONCAT('^(?:-*[^-]){', STR(((192 - ?templateMotifSequenceMatchBeginPositionP0A6E4290) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1301) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581291, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581291) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1301), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581291, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581291) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1301), '}'), '')))), '[^-]', ''))) AS ?step2302) .
BIND(((?step2302 + ?targetMotifMatchRegionMatchBeginPositionMF_00581292) - 1) AS ?thisPositionOn92) .
BIND(?thisPositionOn92 AS ?thisPositionOn93) .
BIND(?this AS ?pfs1t303) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse90) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00581a88')) AS ?annotation88) .
BIND(?this AS ?pfs87) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch308 faldo:location ?templateMotifSequenceMatchRegionP0A6E4309 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6E4311 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6E4MF_00581304 .
?templateMotifSequenceMatchRegionP0A6E4309 faldo:begin ?templateMotifSequenceMatchBeginP0A6E4310 .
?templateMotifSequenceMatchBeginP0A6E4310 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6E4305 ;
faldo:reference isoform:P0A6E4-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6E4311 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
?targetMotifMatch312 faldo:location ?targetMotifMatchRegionMatch313 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00581315 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6E4MF_00581306 .
?targetMotifMatchRegionMatch313 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00581314 .
?targetMotifMatchRegionMatchBeginMF_00581314 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00581307 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00581315 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6E4MF_00581304, 1, (STRLEN(?templateMotifCigarP0A6E4MF_00581304) - STRLEN(REPLACE(?templateMotifCigarP0A6E4MF_00581304, CONCAT('^(?:-*[^-]){', STR(((194 - ?templateMotifSequenceMatchBeginPositionP0A6E4305) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1316) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581306, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581306) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581306, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1316), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581306, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581306) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581306, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1316), '}'), '')))), '[^-]', ''))) AS ?step2317) .
BIND(((?step2317 + ?targetMotifMatchRegionMatchBeginPositionMF_00581307) - 1) AS ?thisPositionOn99) .
BIND(?thisPositionOn99 AS ?thisPositionOn100) .
BIND(?this AS ?pfs1t318) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfsb96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfse97) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn99, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00581a95')) AS ?annotation95) .
BIND(?this AS ?pfs94) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch323 faldo:location ?templateMotifSequenceMatchRegionP0A6E4324 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6E4326 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6E4MF_00581319 .
?templateMotifSequenceMatchRegionP0A6E4324 faldo:begin ?templateMotifSequenceMatchBeginP0A6E4325 .
?templateMotifSequenceMatchBeginP0A6E4325 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6E4320 ;
faldo:reference isoform:P0A6E4-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6E4326 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
?targetMotifMatch327 faldo:location ?targetMotifMatchRegionMatch328 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00581330 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6E4MF_00581321 .
?targetMotifMatchRegionMatch328 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00581329 .
?targetMotifMatchRegionMatchBeginMF_00581329 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00581322 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00581330 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6E4MF_00581319, 1, (STRLEN(?templateMotifCigarP0A6E4MF_00581319) - STRLEN(REPLACE(?templateMotifCigarP0A6E4MF_00581319, CONCAT('^(?:-*[^-]){', STR(((201 - ?templateMotifSequenceMatchBeginPositionP0A6E4320) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1331) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581321, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581321) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1331), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581321, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581321) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1331), '}'), '')))), '[^-]', ''))) AS ?step2332) .
BIND(((?step2332 + ?targetMotifMatchRegionMatchBeginPositionMF_00581322) - 1) AS ?thisPositionOn106) .
BIND(?thisPositionOn106 AS ?thisPositionOn107) .
BIND(?this AS ?pfs1t333) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfsb103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfse104) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn106, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_00581a102')) AS ?annotation102) .
BIND(?this AS ?pfs101) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch338 faldo:location ?templateMotifSequenceMatchRegionP0A6E4339 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6E4341 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6E4MF_00581334 .
?templateMotifSequenceMatchRegionP0A6E4339 faldo:begin ?templateMotifSequenceMatchBeginP0A6E4340 .
?templateMotifSequenceMatchBeginP0A6E4340 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6E4335 ;
faldo:reference isoform:P0A6E4-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6E4341 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
?targetMotifMatch342 faldo:location ?targetMotifMatchRegionMatch343 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00581345 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6E4MF_00581336 .
?targetMotifMatchRegionMatch343 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00581344 .
?targetMotifMatchRegionMatchBeginMF_00581344 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00581337 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00581345 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6E4MF_00581334, 1, (STRLEN(?templateMotifCigarP0A6E4MF_00581334) - STRLEN(REPLACE(?templateMotifCigarP0A6E4MF_00581334, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionP0A6E4335) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1346) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581336, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581336) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581336, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1346), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581336, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581336) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581336, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1346), '}'), '')))), '[^-]', ''))) AS ?step2347) .
BIND(((?step2347 + ?targetMotifMatchRegionMatchBeginPositionMF_00581337) - 1) AS ?thisPositionOn113) .
BIND(?thisPositionOn113 AS ?thisPositionOn114) .
BIND(?this AS ?pfs1t348) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfsb110) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfse111) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn113, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00581a109')) AS ?annotation109) .
BIND(?this AS ?pfs108) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch353 faldo:location ?templateMotifSequenceMatchRegionP0A6E4354 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6E4356 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6E4MF_00581349 .
?templateMotifSequenceMatchRegionP0A6E4354 faldo:begin ?templateMotifSequenceMatchBeginP0A6E4355 .
?templateMotifSequenceMatchBeginP0A6E4355 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6E4350 ;
faldo:reference isoform:P0A6E4-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6E4356 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
?targetMotifMatch357 faldo:location ?targetMotifMatchRegionMatch358 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00581360 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6E4MF_00581351 .
?targetMotifMatchRegionMatch358 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00581359 .
?targetMotifMatchRegionMatchBeginMF_00581359 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00581352 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00581360 edam:has_input signature:MF_00581 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6E4MF_00581349, 1, (STRLEN(?templateMotifCigarP0A6E4MF_00581349) - STRLEN(REPLACE(?templateMotifCigarP0A6E4MF_00581349, CONCAT('^(?:-*[^-]){', STR(((280 - ?templateMotifSequenceMatchBeginPositionP0A6E4350) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1361) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581351, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581351) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581351, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1361), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6E4MF_00581351, 1, (STRLEN(?targetMotifMatchCigarP0A6E4MF_00581351) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6E4MF_00581351, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1361), '}'), '')))), '[^-]', ''))) AS ?step2362) .
BIND(((?step2362 + ?targetMotifMatchRegionMatchBeginPositionMF_00581352) - 1) AS ?thisPositionOn120) .
BIND(?thisPositionOn120 AS ?thisPositionOn121) .
BIND(?this AS ?pfs1t363) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfsb117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfse118) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn120, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00581a116')) AS ?annotation116) .
BIND(?this AS ?pfs115) .
}
}
"xsd:string |
