| http://purl.uniprot.org/unirules/MF_01200#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:419850 up:source unirule:MF_01200 .
_:419851 up:source unirule:MF_01200 .
_:419852 up:source unirule:MF_01200 .
_:419853 up:source unirule:MF_01200 .
_:419854 up:source unirule:MF_01200 .
_:419855 up:source unirule:MF_01200 .
_:419856 up:source unirule:MF_01200 .
_:419857 up:source unirule:MF_01200 .
_:419858 up:source unirule:MF_01200 .
_:419859 up:source unirule:MF_01200 .
_:419860 up:source unirule:MF_01200 .
_:419861 up:source unirule:MF_01200 .
_:419862 up:source unirule:MF_01200 .
_:419863 up:source unirule:MF_01200 .
_:419864 up:source unirule:MF_01200 .
_:419865 up:source unirule:MF_01200 .
_:419866 up:source unirule:MF_01200 .
_:419867 up:source unirule:MF_01200 .
_:419868 up:source unirule:MF_01200 .
_:419869 up:source unirule:MF_01200 .
_:419870 up:source unirule:MF_01200 .
_:419871 up:source unirule:MF_01200 .
_:419872 up:source unirule:MF_01200 .
_:419873 up:source unirule:MF_01200 .
_:419874 up:source unirule:MF_01200 .
_:419875 up:source unirule:MF_01200 .
_:419876 up:source unirule:MF_01200 .
_:419877 up:source unirule:MF_01200 .
_:419878 up:source unirule:MF_01200 .
_:419879 up:source unirule:MF_01200 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0004590 ,
GO:0044205 ,
keyword:210 ,
keyword:456 ,
keyword:665 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.1.1.23' ;
up:fullName "Orotidine 5'-phosphate decarboxylase" ;
rdf:type up:Structured_Name .
?name1 up:fullName 'OMP decarboxylase' ;
up:shortName 'OMPDCase' ,
'OMPdecase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'pyrF' .
?annotation3 a up:Function_Annotation ;
rdfs:comment "Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP)." .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Pyrimidine metabolism; UMP biosynthesis via de novo pathway; UMP from orotate: step 2/2.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the OMP decarboxylase family. Type 1 subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf ?molecule14 .
?molecule14 rdfs:label 'substrate' .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf ?molecule22 .
?molecule22 rdfs:label 'substrate' .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf ?molecule36 .
?molecule36 rdfs:label 'substrate' .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf ?molecule44 .
?molecule44 rdfs:label 'substrate' .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf ?molecule52 .
?molecule52 rdfs:label 'substrate' .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation .
?pfsb57 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf ?molecule60 .
?molecule60 rdfs:label 'substrate' .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
up:ligand ?ligand67 ;
rdf:type up:Binding_Site_Annotation .
?pfsb65 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?ligand67 rdfs:subClassOf ?molecule68 .
?molecule68 rdfs:label 'substrate' .
?pfs71 up:annotation ?annotation72 .
?annotation72 faldo:begin ?pfsb73 ;
faldo:end ?pfse74 ;
up:ligand ?ligand75 ;
rdf:type up:Binding_Site_Annotation .
?pfsb73 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse74 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand75 rdfs:subClassOf ?molecule76 .
?molecule76 rdfs:label 'substrate' .
?pfs79 up:annotation ?annotation80 .
?annotation80 faldo:begin ?pfsb81 ;
faldo:end ?pfse82 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb81 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?pfse82 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfs85 up:annotation ?annotation86 .
?annotation86 faldo:begin ?pfsb87 ;
faldo:end ?pfse88 ;
up:ligand ?ligand89 ;
rdf:type up:Binding_Site_Annotation .
?pfsb87 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse88 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?ligand89 rdfs:subClassOf ?molecule90 .
?molecule90 rdfs:label 'substrate' .
?pfs93 up:annotation ?annotation94 .
?annotation94 faldo:begin ?pfsb95 ;
faldo:end ?pfse96 ;
up:ligand ?ligand97 ;
rdf:type up:Binding_Site_Annotation .
?pfsb95 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?pfse96 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?ligand97 rdfs:subClassOf ?molecule98 .
?molecule98 rdfs:label 'substrate' .
?pfs101 up:annotation ?annotation102 .
?annotation102 faldo:begin ?pfsb103 ;
faldo:end ?pfse104 ;
up:ligand ?ligand105 ;
rdf:type up:Binding_Site_Annotation .
?pfsb103 faldo:position ?thisPositionOn107 ;
rdf:type faldo:ExactPosition .
?pfse104 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?ligand105 rdfs:subClassOf ?molecule106 .
?molecule106 rdfs:label 'substrate' .
?pfs109 up:annotation ?annotation110 .
?annotation110 faldo:begin ?pfsb111 ;
faldo:end ?pfse112 ;
up:ligand ?ligand113 ;
rdf:type up:Binding_Site_Annotation .
?pfsb111 faldo:position ?thisPositionOn115 ;
rdf:type faldo:ExactPosition .
?pfse112 faldo:position ?thisPositionOn116 ;
rdf:type faldo:ExactPosition .
?ligand113 rdfs:subClassOf ?molecule114 .
?molecule114 rdfs:label 'substrate' .
?pfs117 up:annotation ?annotation118 .
?annotation118 faldo:begin ?pfsb119 ;
faldo:end ?pfse120 ;
up:ligand ?ligand121 ;
rdf:type up:Binding_Site_Annotation .
?pfsb119 faldo:position ?thisPositionOn123 ;
rdf:type faldo:ExactPosition .
?pfse120 faldo:position ?thisPositionOn124 ;
rdf:type faldo:ExactPosition .
?ligand121 rdfs:subClassOf ?molecule122 .
?molecule122 rdfs:label 'substrate' .
?pfs125 up:annotation ?annotation126 .
?annotation126 faldo:begin ?pfsb127 ;
faldo:end ?pfse128 ;
up:ligand ?ligand129 ;
rdf:type up:Binding_Site_Annotation .
?pfsb127 faldo:position ?thisPositionOn131 ;
rdf:type faldo:ExactPosition .
?pfse128 faldo:position ?thisPositionOn132 ;
rdf:type faldo:ExactPosition .
?ligand129 rdfs:subClassOf ?molecule130 .
?molecule130 rdfs:label 'substrate' .
?pfs133 up:annotation ?annotation134 .
?annotation134 faldo:begin ?pfsb135 ;
faldo:end ?pfse136 ;
up:ligand ?ligand137 ;
rdf:type up:Binding_Site_Annotation .
?pfsb135 faldo:position ?thisPositionOn139 ;
rdf:type faldo:ExactPosition .
?pfse136 faldo:position ?thisPositionOn140 ;
rdf:type faldo:ExactPosition .
?ligand137 rdfs:subClassOf ?molecule138 .
?molecule138 rdfs:label 'substrate' .
_:419880 a rdf:Statement ;
up:attribution _:419850 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:419881 a rdf:Statement ;
up:attribution _:419851 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:419882 a rdf:Statement ;
up:attribution _:419852 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:419883 a rdf:Statement ;
up:attribution _:419853 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:419884 a rdf:Statement ;
up:attribution _:419854 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:419885 a rdf:Statement ;
up:attribution _:419855 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:419886 a rdf:Statement ;
up:attribution _:419856 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:419887 a rdf:Statement ;
up:attribution _:419857 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:419888 a rdf:Statement ;
up:attribution _:419858 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:419889 a rdf:Statement ;
up:attribution _:419859 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:210 .
_:419890 a rdf:Statement ;
up:attribution _:419860 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:665 .
_:419891 a rdf:Statement ;
up:attribution _:419861 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004590 .
_:419892 a rdf:Statement ;
up:attribution _:419862 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044205 .
_:419893 a rdf:Statement ;
up:source unirule:MF_01200 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:419894 a rdf:Statement ;
up:attribution _:419863 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:419895 a rdf:Statement ;
up:source unirule:MF_01200 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:419896 a rdf:Statement ;
up:attribution _:419864 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:419897 a rdf:Statement ;
up:source unirule:MF_01200 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:419898 a rdf:Statement ;
up:attribution _:419865 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:419899 a rdf:Statement ;
up:source unirule:MF_01200 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:419900 a rdf:Statement ;
up:attribution _:419866 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:419901 a rdf:Statement ;
up:source unirule:MF_01200 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:419902 a rdf:Statement ;
up:attribution _:419867 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:419903 a rdf:Statement ;
up:source unirule:MF_01200 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:419904 a rdf:Statement ;
up:attribution _:419868 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:419905 a rdf:Statement ;
up:source unirule:MF_01200 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:419906 a rdf:Statement ;
up:attribution _:419869 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:419907 a rdf:Statement ;
up:source unirule:MF_01200 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:419908 a rdf:Statement ;
up:attribution _:419870 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:419909 a rdf:Statement ;
up:source unirule:MF_01200 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:419910 a rdf:Statement ;
up:attribution _:419871 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:419911 a rdf:Statement ;
up:source unirule:MF_01200 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:419912 a rdf:Statement ;
up:attribution _:419872 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:419913 a rdf:Statement ;
up:source unirule:MF_01200 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
_:419914 a rdf:Statement ;
up:attribution _:419873 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
_:419915 a rdf:Statement ;
up:source unirule:MF_01200 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:419916 a rdf:Statement ;
up:attribution _:419874 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:419917 a rdf:Statement ;
up:source unirule:MF_01200 ;
rdf:subject ?pfs101 ;
rdf:predicate up:annotation ;
rdf:object ?annotation102 .
_:419918 a rdf:Statement ;
up:attribution _:419875 ;
rdf:subject ?pfs101 ;
rdf:predicate up:annotation ;
rdf:object ?annotation102 .
_:419919 a rdf:Statement ;
up:source unirule:MF_01200 ;
rdf:subject ?pfs109 ;
rdf:predicate up:annotation ;
rdf:object ?annotation110 .
_:419920 a rdf:Statement ;
up:attribution _:419876 ;
rdf:subject ?pfs109 ;
rdf:predicate up:annotation ;
rdf:object ?annotation110 .
_:419921 a rdf:Statement ;
up:source unirule:MF_01200 ;
rdf:subject ?pfs117 ;
rdf:predicate up:annotation ;
rdf:object ?annotation118 .
_:419922 a rdf:Statement ;
up:attribution _:419877 ;
rdf:subject ?pfs117 ;
rdf:predicate up:annotation ;
rdf:object ?annotation118 .
_:419923 a rdf:Statement ;
up:source unirule:MF_01200 ;
rdf:subject ?pfs125 ;
rdf:predicate up:annotation ;
rdf:object ?annotation126 .
_:419924 a rdf:Statement ;
up:attribution _:419878 ;
rdf:subject ?pfs125 ;
rdf:predicate up:annotation ;
rdf:object ?annotation126 .
_:419925 a rdf:Statement ;
up:source unirule:MF_01200 ;
rdf:subject ?pfs133 ;
rdf:predicate up:annotation ;
rdf:object ?annotation134 .
_:419926 a rdf:Statement ;
up:attribution _:419879 ;
rdf:subject ?pfs133 ;
rdf:predicate up:annotation ;
rdf:object ?annotation134 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01200
#Rule MF_01200 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01200_B .
?thisOrganism rdfs:subClassOf+ taxon:2 .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01200_A .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
}
BIND(URI(CONCAT(STR(?this), '#MF_01200a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01200a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01200a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01200a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01200a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01200a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01200a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch145 faldo:location ?templateMotifSequenceMatchRegionO26232146 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO26232148 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO26232MF_01200_A141 .
?templateMotifSequenceMatchRegionO26232146 faldo:begin ?templateMotifSequenceMatchBeginO26232147 .
?templateMotifSequenceMatchBeginO26232147 faldo:position ?templateMotifSequenceMatchBeginPositionO26232142 ;
faldo:reference isoform:O26232-1 .
?templateMotifSequenceProfileAlignmentOperationO26232148 edam:has_input signature:MF_01200_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch149 faldo:location ?targetMotifMatchRegionMatch150 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_A152 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO26232MF_01200_A143 .
?targetMotifMatchRegionMatch150 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_A151 .
?targetMotifMatchRegionMatchBeginMF_01200_A151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_A144 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01200_A152 edam:has_input signature:MF_01200_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26232MF_01200_A141, 1, (STRLEN(?templateMotifCigarO26232MF_01200_A141) - STRLEN(REPLACE(?templateMotifCigarO26232MF_01200_A141, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionO26232142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A143, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A143) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A143, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A143) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) .
BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_A144) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26232MF_01200_A141, 1, (STRLEN(?templateMotifCigarO26232MF_01200_A141) - STRLEN(REPLACE(?templateMotifCigarO26232MF_01200_A141, CONCAT('^(?:-*[^-]){', STR(((190 - ?templateMotifSequenceMatchBeginPositionO26232142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A143, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A143) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A143, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A143) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) .
BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_A144) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t157) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse12) .
FILTER ((BOUND(?thisPositionOn15) && BOUND(?thisPositionOn16))) .
BIND(URI(CONCAT(STR(?this), '#MF_01200a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch162 faldo:location ?templateMotifSequenceMatchRegionO26232163 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO26232165 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO26232MF_01200_A158 .
?templateMotifSequenceMatchRegionO26232163 faldo:begin ?templateMotifSequenceMatchBeginO26232164 .
?templateMotifSequenceMatchBeginO26232164 faldo:position ?templateMotifSequenceMatchBeginPositionO26232159 ;
faldo:reference isoform:O26232-1 .
?templateMotifSequenceProfileAlignmentOperationO26232165 edam:has_input signature:MF_01200_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch166 faldo:location ?targetMotifMatchRegionMatch167 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_A169 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO26232MF_01200_A160 .
?targetMotifMatchRegionMatch167 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_A168 .
?targetMotifMatchRegionMatchBeginMF_01200_A168 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_A161 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01200_A169 edam:has_input signature:MF_01200_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26232MF_01200_A158, 1, (STRLEN(?templateMotifCigarO26232MF_01200_A158) - STRLEN(REPLACE(?templateMotifCigarO26232MF_01200_A158, CONCAT('^(?:-*[^-]){', STR(((70 - ?templateMotifSequenceMatchBeginPositionO26232159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A160, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A160) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A160, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A160) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) .
BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_A161) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26232MF_01200_A158, 1, (STRLEN(?templateMotifCigarO26232MF_01200_A158) - STRLEN(REPLACE(?templateMotifCigarO26232MF_01200_A158, CONCAT('^(?:-*[^-]){', STR(((79 - ?templateMotifSequenceMatchBeginPositionO26232159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A160, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A160) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A160, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A160) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) .
BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_A161) - 1) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t174) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse20) .
FILTER (REGEX('D[ARNDCQEGHILKMFPSTWYVBZJUOX]K[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]D[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn23, (?thisPositionOn24 - ?thisPositionOn23)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01200a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionO26232180 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO26232182 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO26232MF_01200_A175 .
?templateMotifSequenceMatchRegionO26232180 faldo:begin ?templateMotifSequenceMatchBeginO26232181 .
?templateMotifSequenceMatchBeginO26232181 faldo:position ?templateMotifSequenceMatchBeginPositionO26232176 ;
faldo:reference isoform:O26232-1 .
?templateMotifSequenceProfileAlignmentOperationO26232182 edam:has_input signature:MF_01200_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_A186 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO26232MF_01200_A177 .
?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_A185 .
?targetMotifMatchRegionMatchBeginMF_01200_A185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_A178 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01200_A186 edam:has_input signature:MF_01200_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26232MF_01200_A175, 1, (STRLEN(?templateMotifCigarO26232MF_01200_A175) - STRLEN(REPLACE(?templateMotifCigarO26232MF_01200_A175, CONCAT('^(?:-*[^-]){', STR(((72 - ?templateMotifSequenceMatchBeginPositionO26232176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A177, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A177) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A177, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A177) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) .
BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_A178) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t189) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01200a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionO26232195 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO26232197 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO26232MF_01200_A190 .
?templateMotifSequenceMatchRegionO26232195 faldo:begin ?templateMotifSequenceMatchBeginO26232196 .
?templateMotifSequenceMatchBeginO26232196 faldo:position ?templateMotifSequenceMatchBeginPositionO26232191 ;
faldo:reference isoform:O26232-1 .
?templateMotifSequenceProfileAlignmentOperationO26232197 edam:has_input signature:MF_01200_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_A201 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO26232MF_01200_A192 .
?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_A200 .
?targetMotifMatchRegionMatchBeginMF_01200_A200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_A193 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01200_A201 edam:has_input signature:MF_01200_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26232MF_01200_A190, 1, (STRLEN(?templateMotifCigarO26232MF_01200_A190) - STRLEN(REPLACE(?templateMotifCigarO26232MF_01200_A190, CONCAT('^(?:-*[^-]){', STR(((20 - ?templateMotifSequenceMatchBeginPositionO26232191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A192, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A192) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A192, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A192) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_A193) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01200a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionO26232210 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO26232212 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO26232MF_01200_A205 .
?templateMotifSequenceMatchRegionO26232210 faldo:begin ?templateMotifSequenceMatchBeginO26232211 .
?templateMotifSequenceMatchBeginO26232211 faldo:position ?templateMotifSequenceMatchBeginPositionO26232206 ;
faldo:reference isoform:O26232-1 .
?templateMotifSequenceProfileAlignmentOperationO26232212 edam:has_input signature:MF_01200_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_A216 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO26232MF_01200_A207 .
?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_A215 .
?targetMotifMatchRegionMatchBeginMF_01200_A215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_A208 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01200_A216 edam:has_input signature:MF_01200_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26232MF_01200_A205, 1, (STRLEN(?templateMotifCigarO26232MF_01200_A205) - STRLEN(REPLACE(?templateMotifCigarO26232MF_01200_A205, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionO26232206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A207, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A207) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A207, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A207) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) .
BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_A208) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t219) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01200a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionO26232225 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO26232227 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO26232MF_01200_A220 .
?templateMotifSequenceMatchRegionO26232225 faldo:begin ?templateMotifSequenceMatchBeginO26232226 .
?templateMotifSequenceMatchBeginO26232226 faldo:position ?templateMotifSequenceMatchBeginPositionO26232221 ;
faldo:reference isoform:O26232-1 .
?templateMotifSequenceProfileAlignmentOperationO26232227 edam:has_input signature:MF_01200_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_A231 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO26232MF_01200_A222 .
?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_A230 .
?targetMotifMatchRegionMatchBeginMF_01200_A230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_A223 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01200_A231 edam:has_input signature:MF_01200_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26232MF_01200_A220, 1, (STRLEN(?templateMotifCigarO26232MF_01200_A220) - STRLEN(REPLACE(?templateMotifCigarO26232MF_01200_A220, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionO26232221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A222, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A222) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A222, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A222) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) .
BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_A223) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t234) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01200a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch239 faldo:location ?templateMotifSequenceMatchRegionO26232240 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO26232242 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO26232MF_01200_A235 .
?templateMotifSequenceMatchRegionO26232240 faldo:begin ?templateMotifSequenceMatchBeginO26232241 .
?templateMotifSequenceMatchBeginO26232241 faldo:position ?templateMotifSequenceMatchBeginPositionO26232236 ;
faldo:reference isoform:O26232-1 .
?templateMotifSequenceProfileAlignmentOperationO26232242 edam:has_input signature:MF_01200_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch243 faldo:location ?targetMotifMatchRegionMatch244 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_A246 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO26232MF_01200_A237 .
?targetMotifMatchRegionMatch244 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_A245 .
?targetMotifMatchRegionMatchBeginMF_01200_A245 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_A238 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01200_A246 edam:has_input signature:MF_01200_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26232MF_01200_A235, 1, (STRLEN(?templateMotifCigarO26232MF_01200_A235) - STRLEN(REPLACE(?templateMotifCigarO26232MF_01200_A235, CONCAT('^(?:-*[^-]){', STR(((202 - ?templateMotifSequenceMatchBeginPositionO26232236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1247) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A237, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A237) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A237, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A237) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), '')))), '[^-]', ''))) AS ?step2248) .
BIND(((?step2248 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_A238) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs1t249) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01200a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch254 faldo:location ?templateMotifSequenceMatchRegionO26232255 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO26232257 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO26232MF_01200_A250 .
?templateMotifSequenceMatchRegionO26232255 faldo:begin ?templateMotifSequenceMatchBeginO26232256 .
?templateMotifSequenceMatchBeginO26232256 faldo:position ?templateMotifSequenceMatchBeginPositionO26232251 ;
faldo:reference isoform:O26232-1 .
?templateMotifSequenceProfileAlignmentOperationO26232257 edam:has_input signature:MF_01200_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch258 faldo:location ?targetMotifMatchRegionMatch259 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_A261 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO26232MF_01200_A252 .
?targetMotifMatchRegionMatch259 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_A260 .
?targetMotifMatchRegionMatchBeginMF_01200_A260 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_A253 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01200_A261 edam:has_input signature:MF_01200_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO26232MF_01200_A250, 1, (STRLEN(?templateMotifCigarO26232MF_01200_A250) - STRLEN(REPLACE(?templateMotifCigarO26232MF_01200_A250, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionO26232251) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1262) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A252, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A252) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO26232MF_01200_A252, 1, (STRLEN(?targetMotifMatchCigarO26232MF_01200_A252) - STRLEN(REPLACE(?targetMotifMatchCigarO26232MF_01200_A252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), '')))), '[^-]', ''))) AS ?step2263) .
BIND(((?step2263 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_A253) - 1) AS ?thisPositionOn69) .
BIND(?thisPositionOn69 AS ?thisPositionOn70) .
BIND(?this AS ?pfs1t264) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse66) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01200a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch269 faldo:location ?templateMotifSequenceMatchRegionP08244270 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08244272 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08244MF_01200_B265 .
?templateMotifSequenceMatchRegionP08244270 faldo:begin ?templateMotifSequenceMatchBeginP08244271 .
?templateMotifSequenceMatchBeginP08244271 faldo:position ?templateMotifSequenceMatchBeginPositionP08244266 ;
faldo:reference isoform:P08244-1 .
?templateMotifSequenceProfileAlignmentOperationP08244272 edam:has_input signature:MF_01200_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch273 faldo:location ?targetMotifMatchRegionMatch274 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_B276 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08244MF_01200_B267 .
?targetMotifMatchRegionMatch274 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_B275 .
?targetMotifMatchRegionMatchBeginMF_01200_B275 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_B268 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01200_B276 edam:has_input signature:MF_01200_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08244MF_01200_B265, 1, (STRLEN(?templateMotifCigarP08244MF_01200_B265) - STRLEN(REPLACE(?templateMotifCigarP08244MF_01200_B265, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionP08244266) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1277) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B267, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B267) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B267, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B267) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), '')))), '[^-]', ''))) AS ?step2278) .
BIND(((?step2278 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_B268) - 1) AS ?thisPositionOn77) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08244MF_01200_B265, 1, (STRLEN(?templateMotifCigarP08244MF_01200_B265) - STRLEN(REPLACE(?templateMotifCigarP08244MF_01200_B265, CONCAT('^(?:-*[^-]){', STR(((80 - ?templateMotifSequenceMatchBeginPositionP08244266) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1279) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B267, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B267) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B267, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B267) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), '')))), '[^-]', ''))) AS ?step2280) .
BIND(((?step2280 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_B268) - 1) AS ?thisPositionOn78) .
BIND(?this AS ?pfs2t281) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse74) .
FILTER (REGEX('D[ARNDCQEGHILKMFPSTWYVBZJUOX]K[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]D[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn77, (?thisPositionOn78 - ?thisPositionOn77)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01200a72')) AS ?annotation72) .
BIND(?this AS ?pfs71) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch286 faldo:location ?templateMotifSequenceMatchRegionP08244287 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08244289 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08244MF_01200_B282 .
?templateMotifSequenceMatchRegionP08244287 faldo:begin ?templateMotifSequenceMatchBeginP08244288 .
?templateMotifSequenceMatchBeginP08244288 faldo:position ?templateMotifSequenceMatchBeginPositionP08244283 ;
faldo:reference isoform:P08244-1 .
?templateMotifSequenceProfileAlignmentOperationP08244289 edam:has_input signature:MF_01200_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch290 faldo:location ?targetMotifMatchRegionMatch291 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_B293 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08244MF_01200_B284 .
?targetMotifMatchRegionMatch291 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_B292 .
?targetMotifMatchRegionMatchBeginMF_01200_B292 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_B285 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01200_B293 edam:has_input signature:MF_01200_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08244MF_01200_B282, 1, (STRLEN(?templateMotifCigarP08244MF_01200_B282) - STRLEN(REPLACE(?templateMotifCigarP08244MF_01200_B282, CONCAT('^(?:-*[^-]){', STR(((73 - ?templateMotifSequenceMatchBeginPositionP08244283) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1294) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B284, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B284) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B284, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B284) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), '')))), '[^-]', ''))) AS ?step2295) .
BIND(((?step2295 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_B285) - 1) AS ?thisPositionOn83) .
BIND(?thisPositionOn83 AS ?thisPositionOn84) .
BIND(?this AS ?pfs2t296) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse82) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn83, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01200a80')) AS ?annotation80) .
BIND(?this AS ?pfs79) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch301 faldo:location ?templateMotifSequenceMatchRegionP08244302 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08244304 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08244MF_01200_B297 .
?templateMotifSequenceMatchRegionP08244302 faldo:begin ?templateMotifSequenceMatchBeginP08244303 .
?templateMotifSequenceMatchBeginP08244303 faldo:position ?templateMotifSequenceMatchBeginPositionP08244298 ;
faldo:reference isoform:P08244-1 .
?templateMotifSequenceProfileAlignmentOperationP08244304 edam:has_input signature:MF_01200_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch305 faldo:location ?targetMotifMatchRegionMatch306 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_B308 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08244MF_01200_B299 .
?targetMotifMatchRegionMatch306 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_B307 .
?targetMotifMatchRegionMatchBeginMF_01200_B307 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_B300 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01200_B308 edam:has_input signature:MF_01200_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08244MF_01200_B297, 1, (STRLEN(?templateMotifCigarP08244MF_01200_B297) - STRLEN(REPLACE(?templateMotifCigarP08244MF_01200_B297, CONCAT('^(?:-*[^-]){', STR(((22 - ?templateMotifSequenceMatchBeginPositionP08244298) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1309) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B299, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B299) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B299, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B299) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), '')))), '[^-]', ''))) AS ?step2310) .
BIND(((?step2310 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_B300) - 1) AS ?thisPositionOn91) .
BIND(?thisPositionOn91 AS ?thisPositionOn92) .
BIND(?this AS ?pfs2t311) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse88) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01200a86')) AS ?annotation86) .
BIND(?this AS ?pfs85) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch316 faldo:location ?templateMotifSequenceMatchRegionP08244317 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08244319 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08244MF_01200_B312 .
?templateMotifSequenceMatchRegionP08244317 faldo:begin ?templateMotifSequenceMatchBeginP08244318 .
?templateMotifSequenceMatchBeginP08244318 faldo:position ?templateMotifSequenceMatchBeginPositionP08244313 ;
faldo:reference isoform:P08244-1 .
?templateMotifSequenceProfileAlignmentOperationP08244319 edam:has_input signature:MF_01200_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch320 faldo:location ?targetMotifMatchRegionMatch321 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_B323 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08244MF_01200_B314 .
?targetMotifMatchRegionMatch321 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_B322 .
?targetMotifMatchRegionMatchBeginMF_01200_B322 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_B315 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01200_B323 edam:has_input signature:MF_01200_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08244MF_01200_B312, 1, (STRLEN(?templateMotifCigarP08244MF_01200_B312) - STRLEN(REPLACE(?templateMotifCigarP08244MF_01200_B312, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionP08244313) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1324) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B314, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B314) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B314, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B314) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), '')))), '[^-]', ''))) AS ?step2325) .
BIND(((?step2325 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_B315) - 1) AS ?thisPositionOn99) .
BIND(?thisPositionOn99 AS ?thisPositionOn100) .
BIND(?this AS ?pfs2t326) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfsb95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfse96) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn99, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01200a94')) AS ?annotation94) .
BIND(?this AS ?pfs93) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch331 faldo:location ?templateMotifSequenceMatchRegionP08244332 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08244334 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08244MF_01200_B327 .
?templateMotifSequenceMatchRegionP08244332 faldo:begin ?templateMotifSequenceMatchBeginP08244333 .
?templateMotifSequenceMatchBeginP08244333 faldo:position ?templateMotifSequenceMatchBeginPositionP08244328 ;
faldo:reference isoform:P08244-1 .
?templateMotifSequenceProfileAlignmentOperationP08244334 edam:has_input signature:MF_01200_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch335 faldo:location ?targetMotifMatchRegionMatch336 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_B338 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08244MF_01200_B329 .
?targetMotifMatchRegionMatch336 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_B337 .
?targetMotifMatchRegionMatchBeginMF_01200_B337 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_B330 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01200_B338 edam:has_input signature:MF_01200_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08244MF_01200_B327, 1, (STRLEN(?templateMotifCigarP08244MF_01200_B327) - STRLEN(REPLACE(?templateMotifCigarP08244MF_01200_B327, CONCAT('^(?:-*[^-]){', STR(((131 - ?templateMotifSequenceMatchBeginPositionP08244328) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1339) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B329, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B329) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B329, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B329) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), '')))), '[^-]', ''))) AS ?step2340) .
BIND(((?step2340 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_B330) - 1) AS ?thisPositionOn107) .
BIND(?thisPositionOn107 AS ?thisPositionOn108) .
BIND(?this AS ?pfs2t341) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfsb103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfse104) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn107, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01200a102')) AS ?annotation102) .
BIND(?this AS ?pfs101) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch346 faldo:location ?templateMotifSequenceMatchRegionP08244347 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08244349 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08244MF_01200_B342 .
?templateMotifSequenceMatchRegionP08244347 faldo:begin ?templateMotifSequenceMatchBeginP08244348 .
?templateMotifSequenceMatchBeginP08244348 faldo:position ?templateMotifSequenceMatchBeginPositionP08244343 ;
faldo:reference isoform:P08244-1 .
?templateMotifSequenceProfileAlignmentOperationP08244349 edam:has_input signature:MF_01200_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch350 faldo:location ?targetMotifMatchRegionMatch351 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_B353 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08244MF_01200_B344 .
?targetMotifMatchRegionMatch351 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_B352 .
?targetMotifMatchRegionMatchBeginMF_01200_B352 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_B345 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01200_B353 edam:has_input signature:MF_01200_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08244MF_01200_B342, 1, (STRLEN(?templateMotifCigarP08244MF_01200_B342) - STRLEN(REPLACE(?templateMotifCigarP08244MF_01200_B342, CONCAT('^(?:-*[^-]){', STR(((192 - ?templateMotifSequenceMatchBeginPositionP08244343) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1354) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B344, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B344) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1354), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B344, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B344) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1354), '}'), '')))), '[^-]', ''))) AS ?step2355) .
BIND(((?step2355 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_B345) - 1) AS ?thisPositionOn115) .
BIND(?thisPositionOn115 AS ?thisPositionOn116) .
BIND(?this AS ?pfs2t356) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfsb111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfse112) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn115, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01200a110')) AS ?annotation110) .
BIND(?this AS ?pfs109) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch361 faldo:location ?templateMotifSequenceMatchRegionP08244362 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08244364 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08244MF_01200_B357 .
?templateMotifSequenceMatchRegionP08244362 faldo:begin ?templateMotifSequenceMatchBeginP08244363 .
?templateMotifSequenceMatchBeginP08244363 faldo:position ?templateMotifSequenceMatchBeginPositionP08244358 ;
faldo:reference isoform:P08244-1 .
?templateMotifSequenceProfileAlignmentOperationP08244364 edam:has_input signature:MF_01200_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch365 faldo:location ?targetMotifMatchRegionMatch366 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_B368 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08244MF_01200_B359 .
?targetMotifMatchRegionMatch366 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_B367 .
?targetMotifMatchRegionMatchBeginMF_01200_B367 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_B360 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01200_B368 edam:has_input signature:MF_01200_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08244MF_01200_B357, 1, (STRLEN(?templateMotifCigarP08244MF_01200_B357) - STRLEN(REPLACE(?templateMotifCigarP08244MF_01200_B357, CONCAT('^(?:-*[^-]){', STR(((201 - ?templateMotifSequenceMatchBeginPositionP08244358) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1369) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B359, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B359) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1369), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B359, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B359) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1369), '}'), '')))), '[^-]', ''))) AS ?step2370) .
BIND(((?step2370 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_B360) - 1) AS ?thisPositionOn123) .
BIND(?thisPositionOn123 AS ?thisPositionOn124) .
BIND(?this AS ?pfs2t371) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn123))) AS ?pfsb119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn124))) AS ?pfse120) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn123, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01200a118')) AS ?annotation118) .
BIND(?this AS ?pfs117) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch376 faldo:location ?templateMotifSequenceMatchRegionP08244377 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08244379 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08244MF_01200_B372 .
?templateMotifSequenceMatchRegionP08244377 faldo:begin ?templateMotifSequenceMatchBeginP08244378 .
?templateMotifSequenceMatchBeginP08244378 faldo:position ?templateMotifSequenceMatchBeginPositionP08244373 ;
faldo:reference isoform:P08244-1 .
?templateMotifSequenceProfileAlignmentOperationP08244379 edam:has_input signature:MF_01200_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch380 faldo:location ?targetMotifMatchRegionMatch381 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_B383 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08244MF_01200_B374 .
?targetMotifMatchRegionMatch381 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_B382 .
?targetMotifMatchRegionMatchBeginMF_01200_B382 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_B375 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01200_B383 edam:has_input signature:MF_01200_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08244MF_01200_B372, 1, (STRLEN(?templateMotifCigarP08244MF_01200_B372) - STRLEN(REPLACE(?templateMotifCigarP08244MF_01200_B372, CONCAT('^(?:-*[^-]){', STR(((221 - ?templateMotifSequenceMatchBeginPositionP08244373) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1384) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B374, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B374) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1384), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B374, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B374) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1384), '}'), '')))), '[^-]', ''))) AS ?step2385) .
BIND(((?step2385 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_B375) - 1) AS ?thisPositionOn131) .
BIND(?thisPositionOn131 AS ?thisPositionOn132) .
BIND(?this AS ?pfs2t386) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn131))) AS ?pfsb127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn132))) AS ?pfse128) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn131, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01200a126')) AS ?annotation126) .
BIND(?this AS ?pfs125) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch391 faldo:location ?templateMotifSequenceMatchRegionP08244392 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08244394 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08244MF_01200_B387 .
?templateMotifSequenceMatchRegionP08244392 faldo:begin ?templateMotifSequenceMatchBeginP08244393 .
?templateMotifSequenceMatchBeginP08244393 faldo:position ?templateMotifSequenceMatchBeginPositionP08244388 ;
faldo:reference isoform:P08244-1 .
?templateMotifSequenceProfileAlignmentOperationP08244394 edam:has_input signature:MF_01200_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch395 faldo:location ?targetMotifMatchRegionMatch396 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01200_B398 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08244MF_01200_B389 .
?targetMotifMatchRegionMatch396 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01200_B397 .
?targetMotifMatchRegionMatchBeginMF_01200_B397 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01200_B390 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01200_B398 edam:has_input signature:MF_01200_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08244MF_01200_B387, 1, (STRLEN(?templateMotifCigarP08244MF_01200_B387) - STRLEN(REPLACE(?templateMotifCigarP08244MF_01200_B387, CONCAT('^(?:-*[^-]){', STR(((222 - ?templateMotifSequenceMatchBeginPositionP08244388) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1399) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B389, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B389) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B389, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1399), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08244MF_01200_B389, 1, (STRLEN(?targetMotifMatchCigarP08244MF_01200_B389) - STRLEN(REPLACE(?targetMotifMatchCigarP08244MF_01200_B389, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1399), '}'), '')))), '[^-]', ''))) AS ?step2400) .
BIND(((?step2400 + ?targetMotifMatchRegionMatchBeginPositionMF_01200_B390) - 1) AS ?thisPositionOn139) .
BIND(?thisPositionOn139 AS ?thisPositionOn140) .
BIND(?this AS ?pfs2t401) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn139))) AS ?pfsb135) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn140))) AS ?pfse136) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn139, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01200a134')) AS ?annotation134) .
BIND(?this AS ?pfs133) .
}
}
"xsd:string |
