| http://purl.uniprot.org/unirules/MF_01208#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:423178 up:source unirule:MF_01208 .
_:423179 up:source unirule:MF_01208 .
_:423180 up:source unirule:MF_01208 .
_:423181 up:source unirule:MF_01208 .
_:423182 up:source unirule:MF_01208 .
_:423183 up:source unirule:MF_01208 .
_:423184 up:source unirule:MF_01208 .
_:423185 up:source unirule:MF_01208 .
_:423186 up:source unirule:MF_01208 .
_:423187 up:source unirule:MF_01208 .
_:423188 up:source unirule:MF_01208 .
_:423189 up:source unirule:MF_01208 .
_:423190 up:source unirule:MF_01208 .
_:423191 up:source unirule:MF_01208 .
_:423192 up:source unirule:MF_01208 .
_:423193 up:source unirule:MF_01208 .
_:423194 up:source unirule:MF_01208 .
_:423195 up:source unirule:MF_01208 .
_:423196 up:source unirule:MF_01208 .
_:423197 up:source unirule:MF_01208 .
_:423198 up:source unirule:MF_01208 .
_:423199 up:source unirule:MF_01208 .
_:423200 up:source unirule:MF_01208 .
_:423201 up:source unirule:MF_01208 .
_:423202 up:source unirule:MF_01208 .
_:423203 up:source unirule:MF_01208 .
_:423204 up:source unirule:MF_01208 .
_:423205 up:source unirule:MF_01208 .
_:423206 up:source unirule:MF_01208 .
_:423207 up:source unirule:MF_01208 .
_:423208 up:source unirule:MF_01208 .
_:423209 up:source unirule:MF_01208 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0000287 ,
GO:0004588 ,
GO:0044205 ,
keyword:328 ,
keyword:460 ,
keyword:665 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.4.2.10' ;
up:fullName 'Orotate phosphoribosyltransferase' ;
up:shortName 'OPRT' ,
'OPRTase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'pyrE' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Pyrimidine metabolism; UMP biosynthesis via de novo pathway; UMP from orotate: step 1/2.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrE subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:58017 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:30839 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:58017 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:58017 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:58017 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:58017 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:58017 .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf chebi:58017 .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
up:ligand ?ligand69 ;
rdf:type up:Binding_Site_Annotation .
?pfsb67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?ligand69 rdfs:subClassOf chebi:30839 .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
up:ligand ?ligand76 ;
rdf:type up:Binding_Site_Annotation .
?pfsb74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand76 rdfs:subClassOf chebi:30839 .
?pfs79 up:annotation ?annotation80 .
?annotation80 faldo:begin ?pfsb81 ;
faldo:end ?pfse82 ;
up:ligand ?ligand83 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?ligand83 rdfs:subClassOf chebi:58017 .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
up:ligand ?ligand90 ;
rdf:type up:Binding_Site_Annotation .
?pfsb88 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?ligand90 rdfs:subClassOf chebi:58017 .
?pfs93 up:annotation ?annotation94 .
?annotation94 faldo:begin ?pfsb95 ;
faldo:end ?pfse96 ;
up:ligand ?ligand97 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb95 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?pfse96 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?ligand97 rdfs:subClassOf chebi:58017 .
?pfs100 up:annotation ?annotation101 .
?annotation101 faldo:begin ?pfsb102 ;
faldo:end ?pfse103 ;
up:ligand ?ligand104 ;
rdf:type up:Binding_Site_Annotation .
?pfsb102 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?pfse103 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?ligand104 rdfs:subClassOf chebi:58017 .
?pfs107 up:annotation ?annotation108 .
?annotation108 faldo:begin ?pfsb109 ;
faldo:end ?pfse110 ;
up:ligand ?ligand111 ;
rdf:type up:Binding_Site_Annotation .
?pfsb109 faldo:position ?thisPositionOn112 ;
rdf:type faldo:ExactPosition .
?pfse110 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?ligand111 rdfs:subClassOf chebi:58017 .
?pfs114 up:annotation ?annotation115 .
?annotation115 faldo:begin ?pfsb116 ;
faldo:end ?pfse117 ;
up:ligand ?ligand118 ;
rdf:type up:Binding_Site_Annotation .
?pfsb116 faldo:position ?thisPositionOn119 ;
rdf:type faldo:ExactPosition .
?pfse117 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?ligand118 rdfs:subClassOf chebi:30839 .
?pfs121 up:annotation ?annotation122 .
?annotation122 faldo:begin ?pfsb123 ;
faldo:end ?pfse124 ;
up:ligand ?ligand125 ;
rdf:type up:Binding_Site_Annotation .
?pfsb123 faldo:position ?thisPositionOn126 ;
rdf:type faldo:ExactPosition .
?pfse124 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
?ligand125 rdfs:subClassOf chebi:30839 .
_:423210 a rdf:Statement ;
up:attribution _:423178 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:423211 a rdf:Statement ;
up:attribution _:423179 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:423212 a rdf:Statement ;
up:attribution _:423180 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:423213 a rdf:Statement ;
up:attribution _:423181 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:423214 a rdf:Statement ;
up:attribution _:423182 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:423215 a rdf:Statement ;
up:attribution _:423183 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:423216 a rdf:Statement ;
up:attribution _:423184 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:423217 a rdf:Statement ;
up:attribution _:423185 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:423218 a rdf:Statement ;
up:attribution _:423186 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:665 .
_:423219 a rdf:Statement ;
up:attribution _:423187 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:423220 a rdf:Statement ;
up:attribution _:423188 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:328 .
_:423221 a rdf:Statement ;
up:attribution _:423189 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:423222 a rdf:Statement ;
up:attribution _:423190 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:423223 a rdf:Statement ;
up:attribution _:423191 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004588 .
_:423224 a rdf:Statement ;
up:attribution _:423192 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044205 .
_:423225 a rdf:Statement ;
up:source unirule:MF_01208 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:423226 a rdf:Statement ;
up:attribution _:423193 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:423227 a rdf:Statement ;
up:source unirule:MF_01208 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:423228 a rdf:Statement ;
up:attribution _:423194 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:423229 a rdf:Statement ;
up:source unirule:MF_01208 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:423230 a rdf:Statement ;
up:attribution _:423195 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:423231 a rdf:Statement ;
up:source unirule:MF_01208 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:423232 a rdf:Statement ;
up:attribution _:423196 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:423233 a rdf:Statement ;
up:source unirule:MF_01208 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:423234 a rdf:Statement ;
up:attribution _:423197 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:423235 a rdf:Statement ;
up:source unirule:MF_01208 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:423236 a rdf:Statement ;
up:attribution _:423198 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:423237 a rdf:Statement ;
up:source unirule:MF_01208 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:423238 a rdf:Statement ;
up:attribution _:423199 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:423239 a rdf:Statement ;
up:source unirule:MF_01208 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:423240 a rdf:Statement ;
up:attribution _:423200 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:423241 a rdf:Statement ;
up:source unirule:MF_01208 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:423242 a rdf:Statement ;
up:attribution _:423201 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:423243 a rdf:Statement ;
up:source unirule:MF_01208 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:423244 a rdf:Statement ;
up:attribution _:423202 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:423245 a rdf:Statement ;
up:source unirule:MF_01208 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:423246 a rdf:Statement ;
up:attribution _:423203 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:423247 a rdf:Statement ;
up:source unirule:MF_01208 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:423248 a rdf:Statement ;
up:attribution _:423204 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:423249 a rdf:Statement ;
up:source unirule:MF_01208 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:423250 a rdf:Statement ;
up:attribution _:423205 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:423251 a rdf:Statement ;
up:source unirule:MF_01208 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:423252 a rdf:Statement ;
up:attribution _:423206 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:423253 a rdf:Statement ;
up:source unirule:MF_01208 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:423254 a rdf:Statement ;
up:attribution _:423207 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:423255 a rdf:Statement ;
up:source unirule:MF_01208 ;
rdf:subject ?pfs114 ;
rdf:predicate up:annotation ;
rdf:object ?annotation115 .
_:423256 a rdf:Statement ;
up:attribution _:423208 ;
rdf:subject ?pfs114 ;
rdf:predicate up:annotation ;
rdf:object ?annotation115 .
_:423257 a rdf:Statement ;
up:source unirule:MF_01208 ;
rdf:subject ?pfs121 ;
rdf:predicate up:annotation ;
rdf:object ?annotation122 .
_:423258 a rdf:Statement ;
up:attribution _:423209 ;
rdf:subject ?pfs121 ;
rdf:predicate up:annotation ;
rdf:object ?annotation122 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01208
#Rule MF_01208 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
VALUES ?supertaxon128 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01208 .
?thisOrganism rdfs:subClassOf+ ?supertaxon128 .
BIND(URI(CONCAT(STR(?this), '#MF_01208a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01208a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01208a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01208a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01208a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01208a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01208a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionP08870134 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08870136 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08870MF_01208129 .
?templateMotifSequenceMatchRegionP08870134 faldo:begin ?templateMotifSequenceMatchBeginP08870135 .
?templateMotifSequenceMatchBeginP08870135 faldo:position ?templateMotifSequenceMatchBeginPositionP08870130 ;
faldo:reference isoform:P08870-1 .
?templateMotifSequenceProfileAlignmentOperationP08870136 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208140 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08870MF_01208131 .
?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208139 .
?targetMotifMatchRegionMatchBeginMF_01208139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208132 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01208140 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208129, 1, (STRLEN(?templateMotifCigarP08870MF_01208129) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208129, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP08870130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208131, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208131) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208131, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208131) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_01208132) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208129, 1, (STRLEN(?templateMotifCigarP08870MF_01208129) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208129, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionP08870130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208131, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208131) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208131, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208131) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) .
BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_01208132) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t145) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((BOUND(?thisPositionOn14) && BOUND(?thisPositionOn15))) .
BIND(URI(CONCAT(STR(?this), '#MF_01208a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch150 faldo:location ?templateMotifSequenceMatchRegionP08870151 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08870153 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08870MF_01208146 .
?templateMotifSequenceMatchRegionP08870151 faldo:begin ?templateMotifSequenceMatchBeginP08870152 .
?templateMotifSequenceMatchBeginP08870152 faldo:position ?templateMotifSequenceMatchBeginPositionP08870147 ;
faldo:reference isoform:P08870-1 .
?templateMotifSequenceProfileAlignmentOperationP08870153 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch154 faldo:location ?targetMotifMatchRegionMatch155 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208157 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08870MF_01208148 .
?targetMotifMatchRegionMatch155 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208156 .
?targetMotifMatchRegionMatchBeginMF_01208156 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208149 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01208157 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208146, 1, (STRLEN(?templateMotifCigarP08870MF_01208146) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208146, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionP08870147) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208148, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208148) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208148, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208148) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) .
BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_01208149) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208146, 1, (STRLEN(?templateMotifCigarP08870MF_01208146) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208146, CONCAT('^(?:-*[^-]){', STR(((35 - ?templateMotifSequenceMatchBeginPositionP08870147) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208148, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208148) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208148, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208148) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), '')))), '[^-]', ''))) AS ?step2161) .
BIND(((?step2161 + ?targetMotifMatchRegionMatchBeginPositionMF_01208149) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t162) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)) = 'FF')) .
BIND(URI(CONCAT(STR(?this), '#MF_01208a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch167 faldo:location ?templateMotifSequenceMatchRegionP08870168 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08870170 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08870MF_01208163 .
?templateMotifSequenceMatchRegionP08870168 faldo:begin ?templateMotifSequenceMatchBeginP08870169 .
?templateMotifSequenceMatchBeginP08870169 faldo:position ?templateMotifSequenceMatchBeginPositionP08870164 ;
faldo:reference isoform:P08870-1 .
?templateMotifSequenceProfileAlignmentOperationP08870170 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch171 faldo:location ?targetMotifMatchRegionMatch172 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208174 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08870MF_01208165 .
?targetMotifMatchRegionMatch172 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208173 .
?targetMotifMatchRegionMatchBeginMF_01208173 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208166 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01208174 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208163, 1, (STRLEN(?templateMotifCigarP08870MF_01208163) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208163, CONCAT('^(?:-*[^-]){', STR(((72 - ?templateMotifSequenceMatchBeginPositionP08870164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208165, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208165) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208165, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208165) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) .
BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_01208166) - 1) AS ?thisPositionOn28) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208163, 1, (STRLEN(?templateMotifCigarP08870MF_01208163) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208163, CONCAT('^(?:-*[^-]){', STR(((73 - ?templateMotifSequenceMatchBeginPositionP08870164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208165, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208165) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208165, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208165) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), '')))), '[^-]', ''))) AS ?step2178) .
BIND(((?step2178 + ?targetMotifMatchRegionMatchBeginPositionMF_01208166) - 1) AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t179) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, (?thisPositionOn29 - ?thisPositionOn28)) = 'YK')) .
BIND(URI(CONCAT(STR(?this), '#MF_01208a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch184 faldo:location ?templateMotifSequenceMatchRegionP08870185 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08870187 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08870MF_01208180 .
?templateMotifSequenceMatchRegionP08870185 faldo:begin ?templateMotifSequenceMatchBeginP08870186 .
?templateMotifSequenceMatchBeginP08870186 faldo:position ?templateMotifSequenceMatchBeginPositionP08870181 ;
faldo:reference isoform:P08870-1 .
?templateMotifSequenceProfileAlignmentOperationP08870187 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch188 faldo:location ?targetMotifMatchRegionMatch189 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208191 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08870MF_01208182 .
?targetMotifMatchRegionMatch189 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208190 .
?targetMotifMatchRegionMatchBeginMF_01208190 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208183 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01208191 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208180, 1, (STRLEN(?templateMotifCigarP08870MF_01208180) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208180, CONCAT('^(?:-*[^-]){', STR(((26 - ?templateMotifSequenceMatchBeginPositionP08870181) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208182, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208182) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208182, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208182) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) .
BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_01208183) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t194) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER (REGEX('[KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01208a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch199 faldo:location ?templateMotifSequenceMatchRegionP08870200 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08870202 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08870MF_01208195 .
?templateMotifSequenceMatchRegionP08870200 faldo:begin ?templateMotifSequenceMatchBeginP08870201 .
?templateMotifSequenceMatchBeginP08870201 faldo:position ?templateMotifSequenceMatchBeginPositionP08870196 ;
faldo:reference isoform:P08870-1 .
?templateMotifSequenceProfileAlignmentOperationP08870202 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch203 faldo:location ?targetMotifMatchRegionMatch204 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208206 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08870MF_01208197 .
?targetMotifMatchRegionMatch204 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208205 .
?targetMotifMatchRegionMatchBeginMF_01208205 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208198 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01208206 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208195, 1, (STRLEN(?templateMotifCigarP08870MF_01208195) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208195, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionP08870196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1207) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208197, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208197) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208197, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208197) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), '')))), '[^-]', ''))) AS ?step2208) .
BIND(((?step2208 + ?targetMotifMatchRegionMatchBeginPositionMF_01208198) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t209) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01208a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch214 faldo:location ?templateMotifSequenceMatchRegionP08870215 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08870217 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08870MF_01208210 .
?templateMotifSequenceMatchRegionP08870215 faldo:begin ?templateMotifSequenceMatchBeginP08870216 .
?templateMotifSequenceMatchBeginP08870216 faldo:position ?templateMotifSequenceMatchBeginPositionP08870211 ;
faldo:reference isoform:P08870-1 .
?templateMotifSequenceProfileAlignmentOperationP08870217 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch218 faldo:location ?targetMotifMatchRegionMatch219 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208221 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08870MF_01208212 .
?targetMotifMatchRegionMatch219 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208220 .
?targetMotifMatchRegionMatchBeginMF_01208220 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208213 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01208221 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208210, 1, (STRLEN(?templateMotifCigarP08870MF_01208210) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208210, CONCAT('^(?:-*[^-]){', STR(((100 - ?templateMotifSequenceMatchBeginPositionP08870211) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1222) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208212, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208212) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208212, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208212) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), '')))), '[^-]', ''))) AS ?step2223) .
BIND(((?step2223 + ?targetMotifMatchRegionMatchBeginPositionMF_01208213) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t224) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01208a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch229 faldo:location ?templateMotifSequenceMatchRegionP08870230 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08870232 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08870MF_01208225 .
?templateMotifSequenceMatchRegionP08870230 faldo:begin ?templateMotifSequenceMatchBeginP08870231 .
?templateMotifSequenceMatchBeginP08870231 faldo:position ?templateMotifSequenceMatchBeginPositionP08870226 ;
faldo:reference isoform:P08870-1 .
?templateMotifSequenceProfileAlignmentOperationP08870232 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch233 faldo:location ?targetMotifMatchRegionMatch234 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208236 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08870MF_01208227 .
?targetMotifMatchRegionMatch234 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208235 .
?targetMotifMatchRegionMatchBeginMF_01208235 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208228 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01208236 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208225, 1, (STRLEN(?templateMotifCigarP08870MF_01208225) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208225, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionP08870226) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1237) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208227, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208227) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208227, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208227) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), '')))), '[^-]', ''))) AS ?step2238) .
BIND(((?step2238 + ?targetMotifMatchRegionMatchBeginPositionMF_01208228) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t239) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01208a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch244 faldo:location ?templateMotifSequenceMatchRegionP08870245 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08870247 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08870MF_01208240 .
?templateMotifSequenceMatchRegionP08870245 faldo:begin ?templateMotifSequenceMatchBeginP08870246 .
?templateMotifSequenceMatchBeginP08870246 faldo:position ?templateMotifSequenceMatchBeginPositionP08870241 ;
faldo:reference isoform:P08870-1 .
?templateMotifSequenceProfileAlignmentOperationP08870247 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch248 faldo:location ?targetMotifMatchRegionMatch249 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208251 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08870MF_01208242 .
?targetMotifMatchRegionMatch249 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208250 .
?targetMotifMatchRegionMatchBeginMF_01208250 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208243 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01208251 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208240, 1, (STRLEN(?templateMotifCigarP08870MF_01208240) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208240, CONCAT('^(?:-*[^-]){', STR(((105 - ?templateMotifSequenceMatchBeginPositionP08870241) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1252) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208242, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208242) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208242, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208242) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), '')))), '[^-]', ''))) AS ?step2253) .
BIND(((?step2253 + ?targetMotifMatchRegionMatchBeginPositionMF_01208243) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs1t254) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01208a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch259 faldo:location ?templateMotifSequenceMatchRegionP08870260 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08870262 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08870MF_01208255 .
?templateMotifSequenceMatchRegionP08870260 faldo:begin ?templateMotifSequenceMatchBeginP08870261 .
?templateMotifSequenceMatchBeginP08870261 faldo:position ?templateMotifSequenceMatchBeginPositionP08870256 ;
faldo:reference isoform:P08870-1 .
?templateMotifSequenceProfileAlignmentOperationP08870262 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch263 faldo:location ?targetMotifMatchRegionMatch264 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208266 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08870MF_01208257 .
?targetMotifMatchRegionMatch264 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208265 .
?targetMotifMatchRegionMatchBeginMF_01208265 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208258 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01208266 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208255, 1, (STRLEN(?templateMotifCigarP08870MF_01208255) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208255, CONCAT('^(?:-*[^-]){', STR(((128 - ?templateMotifSequenceMatchBeginPositionP08870256) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1267) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208257, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208257) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208257, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208257) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), '')))), '[^-]', ''))) AS ?step2268) .
BIND(((?step2268 + ?targetMotifMatchRegionMatchBeginPositionMF_01208258) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs1t269) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01208a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch274 faldo:location ?templateMotifSequenceMatchRegionP08870275 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP08870277 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP08870MF_01208270 .
?templateMotifSequenceMatchRegionP08870275 faldo:begin ?templateMotifSequenceMatchBeginP08870276 .
?templateMotifSequenceMatchBeginP08870276 faldo:position ?templateMotifSequenceMatchBeginPositionP08870271 ;
faldo:reference isoform:P08870-1 .
?templateMotifSequenceProfileAlignmentOperationP08870277 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch278 faldo:location ?targetMotifMatchRegionMatch279 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208281 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP08870MF_01208272 .
?targetMotifMatchRegionMatch279 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208280 .
?targetMotifMatchRegionMatchBeginMF_01208280 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208273 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01208281 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP08870MF_01208270, 1, (STRLEN(?templateMotifCigarP08870MF_01208270) - STRLEN(REPLACE(?templateMotifCigarP08870MF_01208270, CONCAT('^(?:-*[^-]){', STR(((156 - ?templateMotifSequenceMatchBeginPositionP08870271) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1282) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP08870MF_01208272, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208272) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP08870MF_01208272, 1, (STRLEN(?targetMotifMatchCigarP08870MF_01208272) - STRLEN(REPLACE(?targetMotifMatchCigarP08870MF_01208272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), '')))), '[^-]', ''))) AS ?step2283) .
BIND(((?step2283 + ?targetMotifMatchRegionMatchBeginPositionMF_01208273) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs1t284) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01208a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch289 faldo:location ?templateMotifSequenceMatchRegionO58855290 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58855292 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58855MF_01208285 .
?templateMotifSequenceMatchRegionO58855290 faldo:begin ?templateMotifSequenceMatchBeginO58855291 .
?templateMotifSequenceMatchBeginO58855291 faldo:position ?templateMotifSequenceMatchBeginPositionO58855286 ;
faldo:reference isoform:O58855-1 .
?templateMotifSequenceProfileAlignmentOperationO58855292 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch293 faldo:location ?targetMotifMatchRegionMatch294 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208296 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58855MF_01208287 .
?targetMotifMatchRegionMatch294 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208295 .
?targetMotifMatchRegionMatchBeginMF_01208295 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208288 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01208296 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58855MF_01208285, 1, (STRLEN(?templateMotifCigarO58855MF_01208285) - STRLEN(REPLACE(?templateMotifCigarO58855MF_01208285, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionO58855286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1297) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58855MF_01208287, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208287) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58855MF_01208287, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208287) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), '')))), '[^-]', ''))) AS ?step2298) .
BIND(((?step2298 + ?targetMotifMatchRegionMatchBeginPositionMF_01208288) - 1) AS ?thisPositionOn84) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58855MF_01208285, 1, (STRLEN(?templateMotifCigarO58855MF_01208285) - STRLEN(REPLACE(?templateMotifCigarO58855MF_01208285, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionO58855286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1299) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58855MF_01208287, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208287) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1299), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58855MF_01208287, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208287) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1299), '}'), '')))), '[^-]', ''))) AS ?step2300) .
BIND(((?step2300 + ?targetMotifMatchRegionMatchBeginPositionMF_01208288) - 1) AS ?thisPositionOn85) .
BIND(?this AS ?pfs2t301) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse82) .
FILTER ((BOUND(?thisPositionOn84) && BOUND(?thisPositionOn85))) .
BIND(URI(CONCAT(STR(?this), '#MF_01208a80')) AS ?annotation80) .
BIND(?this AS ?pfs79) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch306 faldo:location ?templateMotifSequenceMatchRegionO58855307 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58855309 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58855MF_01208302 .
?templateMotifSequenceMatchRegionO58855307 faldo:begin ?templateMotifSequenceMatchBeginO58855308 .
?templateMotifSequenceMatchBeginO58855308 faldo:position ?templateMotifSequenceMatchBeginPositionO58855303 ;
faldo:reference isoform:O58855-1 .
?templateMotifSequenceProfileAlignmentOperationO58855309 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch310 faldo:location ?targetMotifMatchRegionMatch311 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208313 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58855MF_01208304 .
?targetMotifMatchRegionMatch311 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208312 .
?targetMotifMatchRegionMatchBeginMF_01208312 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208305 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01208313 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58855MF_01208302, 1, (STRLEN(?templateMotifCigarO58855MF_01208302) - STRLEN(REPLACE(?templateMotifCigarO58855MF_01208302, CONCAT('^(?:-*[^-]){', STR(((93 - ?templateMotifSequenceMatchBeginPositionO58855303) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1314) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58855MF_01208304, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208304) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1314), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58855MF_01208304, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208304) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1314), '}'), '')))), '[^-]', ''))) AS ?step2315) .
BIND(((?step2315 + ?targetMotifMatchRegionMatchBeginPositionMF_01208305) - 1) AS ?thisPositionOn91) .
BIND(?thisPositionOn91 AS ?thisPositionOn92) .
BIND(?this AS ?pfs2t316) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse89) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01208a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch321 faldo:location ?templateMotifSequenceMatchRegionO58855322 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58855324 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58855MF_01208317 .
?templateMotifSequenceMatchRegionO58855322 faldo:begin ?templateMotifSequenceMatchBeginO58855323 .
?templateMotifSequenceMatchBeginO58855323 faldo:position ?templateMotifSequenceMatchBeginPositionO58855318 ;
faldo:reference isoform:O58855-1 .
?templateMotifSequenceProfileAlignmentOperationO58855324 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch325 faldo:location ?targetMotifMatchRegionMatch326 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208328 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58855MF_01208319 .
?targetMotifMatchRegionMatch326 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208327 .
?targetMotifMatchRegionMatchBeginMF_01208327 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208320 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01208328 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58855MF_01208317, 1, (STRLEN(?templateMotifCigarO58855MF_01208317) - STRLEN(REPLACE(?templateMotifCigarO58855MF_01208317, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionO58855318) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1329) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58855MF_01208319, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208319) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208319, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1329), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58855MF_01208319, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208319) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208319, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1329), '}'), '')))), '[^-]', ''))) AS ?step2330) .
BIND(((?step2330 + ?targetMotifMatchRegionMatchBeginPositionMF_01208320) - 1) AS ?thisPositionOn98) .
BIND(?thisPositionOn98 AS ?thisPositionOn99) .
BIND(?this AS ?pfs2t331) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfsb95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfse96) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn98, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01208a94')) AS ?annotation94) .
BIND(?this AS ?pfs93) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch336 faldo:location ?templateMotifSequenceMatchRegionO58855337 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58855339 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58855MF_01208332 .
?templateMotifSequenceMatchRegionO58855337 faldo:begin ?templateMotifSequenceMatchBeginO58855338 .
?templateMotifSequenceMatchBeginO58855338 faldo:position ?templateMotifSequenceMatchBeginPositionO58855333 ;
faldo:reference isoform:O58855-1 .
?templateMotifSequenceProfileAlignmentOperationO58855339 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch340 faldo:location ?targetMotifMatchRegionMatch341 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208343 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58855MF_01208334 .
?targetMotifMatchRegionMatch341 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208342 .
?targetMotifMatchRegionMatchBeginMF_01208342 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208335 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01208343 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58855MF_01208332, 1, (STRLEN(?templateMotifCigarO58855MF_01208332) - STRLEN(REPLACE(?templateMotifCigarO58855MF_01208332, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionO58855333) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1344) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58855MF_01208334, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208334) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208334, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1344), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58855MF_01208334, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208334) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208334, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1344), '}'), '')))), '[^-]', ''))) AS ?step2345) .
BIND(((?step2345 + ?targetMotifMatchRegionMatchBeginPositionMF_01208335) - 1) AS ?thisPositionOn105) .
BIND(?thisPositionOn105 AS ?thisPositionOn106) .
BIND(?this AS ?pfs2t346) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse103) .
FILTER (REGEX('[KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01208a101')) AS ?annotation101) .
BIND(?this AS ?pfs100) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch351 faldo:location ?templateMotifSequenceMatchRegionO58855352 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58855354 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58855MF_01208347 .
?templateMotifSequenceMatchRegionO58855352 faldo:begin ?templateMotifSequenceMatchBeginO58855353 .
?templateMotifSequenceMatchBeginO58855353 faldo:position ?templateMotifSequenceMatchBeginPositionO58855348 ;
faldo:reference isoform:O58855-1 .
?templateMotifSequenceProfileAlignmentOperationO58855354 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch355 faldo:location ?targetMotifMatchRegionMatch356 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208358 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58855MF_01208349 .
?targetMotifMatchRegionMatch356 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208357 .
?targetMotifMatchRegionMatchBeginMF_01208357 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208350 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01208358 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58855MF_01208347, 1, (STRLEN(?templateMotifCigarO58855MF_01208347) - STRLEN(REPLACE(?templateMotifCigarO58855MF_01208347, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionO58855348) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1359) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58855MF_01208349, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208349) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1359), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58855MF_01208349, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208349) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1359), '}'), '')))), '[^-]', ''))) AS ?step2360) .
BIND(((?step2360 + ?targetMotifMatchRegionMatchBeginPositionMF_01208350) - 1) AS ?thisPositionOn112) .
BIND(?thisPositionOn112 AS ?thisPositionOn113) .
BIND(?this AS ?pfs2t361) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfsb109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfse110) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn112, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01208a108')) AS ?annotation108) .
BIND(?this AS ?pfs107) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch366 faldo:location ?templateMotifSequenceMatchRegionO58855367 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58855369 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58855MF_01208362 .
?templateMotifSequenceMatchRegionO58855367 faldo:begin ?templateMotifSequenceMatchBeginO58855368 .
?templateMotifSequenceMatchBeginO58855368 faldo:position ?templateMotifSequenceMatchBeginPositionO58855363 ;
faldo:reference isoform:O58855-1 .
?templateMotifSequenceProfileAlignmentOperationO58855369 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch370 faldo:location ?targetMotifMatchRegionMatch371 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208373 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58855MF_01208364 .
?targetMotifMatchRegionMatch371 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208372 .
?targetMotifMatchRegionMatchBeginMF_01208372 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208365 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01208373 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58855MF_01208362, 1, (STRLEN(?templateMotifCigarO58855MF_01208362) - STRLEN(REPLACE(?templateMotifCigarO58855MF_01208362, CONCAT('^(?:-*[^-]){', STR(((123 - ?templateMotifSequenceMatchBeginPositionO58855363) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1374) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58855MF_01208364, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208364) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208364, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1374), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58855MF_01208364, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208364) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208364, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1374), '}'), '')))), '[^-]', ''))) AS ?step2375) .
BIND(((?step2375 + ?targetMotifMatchRegionMatchBeginPositionMF_01208365) - 1) AS ?thisPositionOn119) .
BIND(?thisPositionOn119 AS ?thisPositionOn120) .
BIND(?this AS ?pfs2t376) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn119))) AS ?pfsb116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfse117) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn119, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01208a115')) AS ?annotation115) .
BIND(?this AS ?pfs114) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch381 faldo:location ?templateMotifSequenceMatchRegionO58855382 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO58855384 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO58855MF_01208377 .
?templateMotifSequenceMatchRegionO58855382 faldo:begin ?templateMotifSequenceMatchBeginO58855383 .
?templateMotifSequenceMatchBeginO58855383 faldo:position ?templateMotifSequenceMatchBeginPositionO58855378 ;
faldo:reference isoform:O58855-1 .
?templateMotifSequenceProfileAlignmentOperationO58855384 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?targetMotifMatch385 faldo:location ?targetMotifMatchRegionMatch386 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01208388 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO58855MF_01208379 .
?targetMotifMatchRegionMatch386 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01208387 .
?targetMotifMatchRegionMatchBeginMF_01208387 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01208380 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01208388 edam:has_input signature:MF_01208 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO58855MF_01208377, 1, (STRLEN(?templateMotifCigarO58855MF_01208377) - STRLEN(REPLACE(?templateMotifCigarO58855MF_01208377, CONCAT('^(?:-*[^-]){', STR(((151 - ?templateMotifSequenceMatchBeginPositionO58855378) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1389) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO58855MF_01208379, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208379) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1389), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO58855MF_01208379, 1, (STRLEN(?targetMotifMatchCigarO58855MF_01208379) - STRLEN(REPLACE(?targetMotifMatchCigarO58855MF_01208379, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1389), '}'), '')))), '[^-]', ''))) AS ?step2390) .
BIND(((?step2390 + ?targetMotifMatchRegionMatchBeginPositionMF_01208380) - 1) AS ?thisPositionOn126) .
BIND(?thisPositionOn126 AS ?thisPositionOn127) .
BIND(?this AS ?pfs2t391) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn126))) AS ?pfsb123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfse124) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn126, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01208a122')) AS ?annotation122) .
BIND(?this AS ?pfs121) .
}
}
"xsd:string |
