| http://purl.uniprot.org/unirules/MF_01259#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:444341 up:source unirule:MF_01259 .
_:444342 up:ecName '6.3.2.31' ,
'6.3.2.34' ;
up:fullName 'Coenzyme F420:L-glutamate ligase' ;
rdf:type up:Structured_Name .
_:444343 up:fullName 'Coenzyme F420-0:L-glutamate ligase' ;
rdf:type up:Structured_Name .
_:444344 up:fullName 'Coenzyme F420-1:gamma-L-glutamate ligase' ;
rdf:type up:Structured_Name .
_:444345 up:source unirule:MF_01259 .
_:444346 up:ecName '1.3.8.17' ;
up:fullName 'Dehydro-coenzyme F420-0 reductase' ;
rdf:type up:Structured_Name .
_:444347 up:source unirule:MF_01259 .
_:444348 up:source unirule:MF_01259 .
_:444349 up:source unirule:MF_01259 .
_:444350 up:source unirule:MF_01259 .
_:444351 up:source unirule:MF_01259 .
_:444352 up:source unirule:MF_01259 .
_:444353 up:source unirule:MF_01259 .
_:444354 up:source unirule:MF_01259 .
_:444355 up:source unirule:MF_01259 .
_:444356 up:source unirule:MF_01259 .
_:444357 up:source unirule:MF_01259 .
_:444358 up:source unirule:MF_01259 .
_:444359 up:source unirule:MF_01259 .
_:444360 up:source unirule:MF_01259 .
_:444361 up:source unirule:MF_01259 .
_:444362 up:source unirule:MF_01259 .
_:444363 up:source unirule:MF_01259 .
_:444364 up:source unirule:MF_01259 .
_:444365 up:source unirule:MF_01259 .
_:444366 up:source unirule:MF_01259 .
_:444367 up:source unirule:MF_01259 .
_:444368 up:source unirule:MF_01259 .
_:444369 up:source unirule:MF_01259 .
_:444370 up:source unirule:MF_01259 .
_:444371 up:source unirule:MF_01259 .
_:444372 up:source unirule:MF_01259 .
_:444373 up:source unirule:MF_01259 .
_:444374 up:source unirule:MF_01259 .
_:444375 up:source unirule:MF_01259 .
_:444376 up:source unirule:MF_01259 .
_:444377 up:source unirule:MF_01259 .
_:444378 up:source unirule:MF_01259 .
_:444379 up:source unirule:MF_01259 .
_:444380 up:source unirule:MF_01259 .
_:444381 up:source unirule:MF_01259 .
_:444382 up:source unirule:MF_01259 .
?this up:annotation ?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation10 ,
?annotation11 ,
?annotation12 ,
?annotation13 ;
up:classifiedWith GO:0052618 ,
GO:0052619 ,
GO:0052645 ,
GO:0052890 ,
keyword:342 ,
keyword:436 ,
keyword:460 ,
keyword:464 ,
keyword:479 ,
keyword:511 ,
keyword:547 ,
keyword:560 ,
keyword:630 ;
up:domain ?namedpart1 ,
?namedpart2 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Bifunctional F420 biosynthesis protein FbiB' ;
rdf:type up:Structured_Name .
?namedpart1 up:alternativeName _:444343 ,
_:444344 ;
up:recommendedName _:444342 .
?namedpart2 up:recommendedName _:444346 .
?gene3 skos:prefLabel 'fbiB' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:activity ?activity9 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity9 up:catalyticActivity ;
up:enzymeClass .
?annotation10 up:cofactor chebi:18420 ,
chebi:29035 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 divalent metal cations per subunit. The ions could be magnesium and/or manganese.' .
?annotation11 up:cofactor chebi:29103 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Monovalent cation. The ion could be potassium.' .
?annotation12 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; coenzyme F420 biosynthesis.' .
?annotation13 a up:Similarity_Annotation ;
rdfs:comment 'In the N-terminal section; belongs to the CofE family.' .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Coenzyme F420:L-glutamate ligase' .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Dehydro-coenzyme F420-0 reductase' .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:37565 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:58210 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:60240 .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:60240 .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation .
?pfsb58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand60 rdfs:subClassOf chebi:60240 .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
up:ligand ?ligand67 ;
rdf:type up:Binding_Site_Annotation .
?pfsb65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?ligand67 rdfs:subClassOf chebi:37565 .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
up:ligand ?ligand74 ;
rdf:type up:Binding_Site_Annotation .
?pfsb72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?ligand74 rdfs:subClassOf chebi:37565 .
?pfs77 up:annotation ?annotation78 .
?annotation78 faldo:begin ?pfsb79 ;
faldo:end ?pfse80 ;
up:ligand ?ligand81 ;
rdf:type up:Binding_Site_Annotation .
?pfsb79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfse80 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?ligand81 rdfs:subClassOf chebi:37565 .
?pfs84 up:annotation ?annotation85 .
?annotation85 faldo:begin ?pfsb86 ;
faldo:end ?pfse87 ;
up:ligand ?ligand88 ;
rdf:type up:Binding_Site_Annotation .
?pfsb86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?pfse87 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?ligand88 rdfs:subClassOf chebi:58210 .
?pfs91 up:annotation ?annotation92 .
?annotation92 faldo:begin ?pfsb93 ;
faldo:end ?pfse94 ;
up:ligand ?ligand95 ;
rdf:type up:Binding_Site_Annotation .
?pfsb93 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?pfse94 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?ligand95 rdfs:subClassOf chebi:133980 .
?pfs98 up:annotation ?annotation99 .
?annotation99 faldo:begin ?pfsb100 ;
faldo:end ?pfse101 ;
up:ligand ?ligand102 ;
rdf:type up:Binding_Site_Annotation .
?pfsb100 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfse101 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
?ligand102 rdfs:subClassOf chebi:58210 .
?pfs105 up:annotation ?annotation106 .
?annotation106 faldo:begin ?pfsb107 ;
faldo:end ?pfse108 ;
up:ligand ?ligand109 ;
rdf:type up:Binding_Site_Annotation .
?pfsb107 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?pfse108 faldo:position ?thisPositionOn111 ;
rdf:type faldo:ExactPosition .
?ligand109 rdfs:subClassOf chebi:58210 .
_:444383 a rdf:Statement ;
up:attribution _:444341 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:444384 a rdf:Statement ;
up:attribution _:444345 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart1 .
_:444385 a rdf:Statement ;
up:attribution _:444347 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart2 .
_:444386 a rdf:Statement ;
up:attribution _:444348 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:444387 a rdf:Statement ;
up:attribution _:444349 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:444388 a rdf:Statement ;
up:attribution _:444350 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:444389 a rdf:Statement ;
up:attribution _:444351 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:444390 a rdf:Statement ;
up:attribution _:444352 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:444391 a rdf:Statement ;
up:attribution _:444353 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:444392 a rdf:Statement ;
up:attribution _:444354 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:444393 a rdf:Statement ;
up:attribution _:444355 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:444394 a rdf:Statement ;
up:attribution _:444356 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:342 .
_:444395 a rdf:Statement ;
up:attribution _:444357 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:444396 a rdf:Statement ;
up:attribution _:444358 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:444397 a rdf:Statement ;
up:attribution _:444359 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:464 .
_:444398 a rdf:Statement ;
up:attribution _:444360 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:444399 a rdf:Statement ;
up:attribution _:444361 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:511 .
_:444400 a rdf:Statement ;
up:attribution _:444362 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:444401 a rdf:Statement ;
up:attribution _:444363 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:444402 a rdf:Statement ;
up:attribution _:444364 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:630 .
_:444403 a rdf:Statement ;
up:attribution _:444365 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0052618 .
_:444404 a rdf:Statement ;
up:attribution _:444366 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0052619 .
_:444405 a rdf:Statement ;
up:attribution _:444367 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0052890 .
_:444406 a rdf:Statement ;
up:attribution _:444368 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0052645 .
_:444407 a rdf:Statement ;
up:source unirule:MF_01259 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:444408 a rdf:Statement ;
up:attribution _:444369 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:444409 a rdf:Statement ;
up:source unirule:MF_01259 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:444410 a rdf:Statement ;
up:attribution _:444370 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:444411 a rdf:Statement ;
up:source unirule:MF_01259 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:444412 a rdf:Statement ;
up:attribution _:444371 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:444413 a rdf:Statement ;
up:source unirule:MF_01259 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:444414 a rdf:Statement ;
up:attribution _:444372 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:444415 a rdf:Statement ;
up:source unirule:MF_01259 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:444416 a rdf:Statement ;
up:attribution _:444373 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:444417 a rdf:Statement ;
up:source unirule:MF_01259 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:444418 a rdf:Statement ;
up:attribution _:444374 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:444419 a rdf:Statement ;
up:source unirule:MF_01259 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:444420 a rdf:Statement ;
up:attribution _:444375 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:444421 a rdf:Statement ;
up:source unirule:MF_01259 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:444422 a rdf:Statement ;
up:attribution _:444376 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:444423 a rdf:Statement ;
up:source unirule:MF_01259 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:444424 a rdf:Statement ;
up:attribution _:444377 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:444425 a rdf:Statement ;
up:source unirule:MF_01259 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:444426 a rdf:Statement ;
up:attribution _:444378 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:444427 a rdf:Statement ;
up:source unirule:MF_01259 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:444428 a rdf:Statement ;
up:attribution _:444379 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:444429 a rdf:Statement ;
up:source unirule:MF_01259 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:444430 a rdf:Statement ;
up:attribution _:444380 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:444431 a rdf:Statement ;
up:source unirule:MF_01259 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:444432 a rdf:Statement ;
up:attribution _:444381 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:444433 a rdf:Statement ;
up:source unirule:MF_01259 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:444434 a rdf:Statement ;
up:attribution _:444382 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01259
#Rule MF_01259 Created by:? on:2005-04-22 Modified by:Edouard de Castro on:2024-09-03
VALUES ?supertaxon112 {taxon:1763 taxon:1817 taxon:1883}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01259 .
?thisOrganism rdfs:subClassOf+ ?supertaxon112 .
BIND(URI(CONCAT(STR(?this), '#MF_01259a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01259a1')) AS ?namedpart1) .
BIND(URI(CONCAT(STR(?this), '#MF_01259a2')) AS ?namedpart2) .
BIND(URI(CONCAT(STR(?this), '#MF_01259a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01259a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01259a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01259a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01259a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_01259a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_01259a13')) AS ?annotation13) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3118 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3120 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7TWV3MF_01259113 .
?templateMotifSequenceMatchRegionQ7TWV3118 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3119 .
?templateMotifSequenceMatchBeginQ7TWV3119 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3114 ;
faldo:reference isoform:Q7TWV3-1 .
?templateMotifSequenceProfileAlignmentOperationQ7TWV3120 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259124 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259115 .
?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259123 .
?targetMotifMatchRegionMatchBeginMF_01259123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259116 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01259124 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259113, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259113) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259113, CONCAT('^(?:-*[^-]){', STR(((244 - ?templateMotifSequenceMatchBeginPositionQ7TWV3114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259115, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259115) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259115, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259115) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_01259116) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER ((BOUND(?thisPositionOn20) && BOUND(?thisPositionOn21))) .
BIND(URI(CONCAT(STR(?this), '#MF_01259a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3133 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3135 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7TWV3MF_01259128 .
?templateMotifSequenceMatchRegionQ7TWV3133 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3134 .
?templateMotifSequenceMatchBeginQ7TWV3134 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3129 ;
faldo:reference isoform:Q7TWV3-1 .
?templateMotifSequenceProfileAlignmentOperationQ7TWV3135 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259139 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259130 .
?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259138 .
?targetMotifMatchRegionMatchBeginMF_01259138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259131 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01259139 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259128, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259128) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259128, CONCAT('^(?:-*[^-]){', STR(((245 - ?templateMotifSequenceMatchBeginPositionQ7TWV3129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259130, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259130) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259130, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259130) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_01259131) - 1) AS ?thisPositionOn26) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER ((BOUND(?thisPositionOn26) && BOUND(?thisPositionOn27))) .
BIND(URI(CONCAT(STR(?this), '#MF_01259a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch147 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3148 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3150 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7TWV3MF_01259143 .
?templateMotifSequenceMatchRegionQ7TWV3148 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3149 .
?templateMotifSequenceMatchBeginQ7TWV3149 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3144 ;
faldo:reference isoform:Q7TWV3-1 .
?templateMotifSequenceProfileAlignmentOperationQ7TWV3150 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
?targetMotifMatch151 faldo:location ?targetMotifMatchRegionMatch152 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259154 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259145 .
?targetMotifMatchRegionMatch152 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259153 .
?targetMotifMatchRegionMatchBeginMF_01259153 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259146 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01259154 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259143, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259143) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259143, CONCAT('^(?:-*[^-]){', STR(((20 - ?templateMotifSequenceMatchBeginPositionQ7TWV3144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259145, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259145) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259145, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259145) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) .
BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_01259146) - 1) AS ?thisPositionOn33) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259143, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259143) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259143, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionQ7TWV3144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259145, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259145) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259145, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259145) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) .
BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_01259146) - 1) AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t159) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER (REGEX('[LIMV]P[ARNDCQEGHILKMFPSTWYVBZJUOX][IVEF]', SUBSTR(?thisSequenceValue, ?thisPositionOn33, (?thisPositionOn34 - ?thisPositionOn33)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01259a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3165 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3167 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7TWV3MF_01259160 .
?templateMotifSequenceMatchRegionQ7TWV3165 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3166 .
?templateMotifSequenceMatchBeginQ7TWV3166 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3161 ;
faldo:reference isoform:Q7TWV3-1 .
?templateMotifSequenceProfileAlignmentOperationQ7TWV3167 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259171 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259162 .
?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259170 .
?targetMotifMatchRegionMatchBeginMF_01259170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259163 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01259171 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259160, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259160) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259160, CONCAT('^(?:-*[^-]){', STR(((260 - ?templateMotifSequenceMatchBeginPositionQ7TWV3161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259162, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259162) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259162, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259162) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) .
BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_01259163) - 1) AS ?thisPositionOn40) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259160, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259160) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259160, CONCAT('^(?:-*[^-]){', STR(((264 - ?templateMotifSequenceMatchBeginPositionQ7TWV3161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259162, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259162) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259162, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259162) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), '')))), '[^-]', ''))) AS ?step2175) .
BIND(((?step2175 + ?targetMotifMatchRegionMatchBeginPositionMF_01259163) - 1) AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t176) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER (REGEX('R[ARNDCQEGHILKMFPSTWYVBZJUOX]S[ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn40, (?thisPositionOn41 - ?thisPositionOn40)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01259a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch181 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3182 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3184 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7TWV3MF_01259177 .
?templateMotifSequenceMatchRegionQ7TWV3182 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3183 .
?templateMotifSequenceMatchBeginQ7TWV3183 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3178 ;
faldo:reference isoform:Q7TWV3-1 .
?templateMotifSequenceProfileAlignmentOperationQ7TWV3184 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
?targetMotifMatch185 faldo:location ?targetMotifMatchRegionMatch186 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259188 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259179 .
?targetMotifMatchRegionMatch186 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259187 .
?targetMotifMatchRegionMatchBeginMF_01259187 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259180 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01259188 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259177, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259177) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259177, CONCAT('^(?:-*[^-]){', STR(((109 - ?templateMotifSequenceMatchBeginPositionQ7TWV3178) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259179, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259179) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259179, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259179) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), '')))), '[^-]', ''))) AS ?step2190) .
BIND(((?step2190 + ?targetMotifMatchRegionMatchBeginPositionMF_01259180) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t191) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01259a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch196 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3197 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3199 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7TWV3MF_01259192 .
?templateMotifSequenceMatchRegionQ7TWV3197 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3198 .
?templateMotifSequenceMatchBeginQ7TWV3198 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3193 ;
faldo:reference isoform:Q7TWV3-1 .
?templateMotifSequenceProfileAlignmentOperationQ7TWV3199 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
?targetMotifMatch200 faldo:location ?targetMotifMatchRegionMatch201 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259203 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259194 .
?targetMotifMatchRegionMatch201 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259202 .
?targetMotifMatchRegionMatchBeginMF_01259202 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259195 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01259203 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259192, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259192) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259192, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionQ7TWV3193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1204) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259194, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259194) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259194, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259194) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), '')))), '[^-]', ''))) AS ?step2205) .
BIND(((?step2205 + ?targetMotifMatchRegionMatchBeginPositionMF_01259195) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs1t206) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01259a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch211 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3212 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3214 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7TWV3MF_01259207 .
?templateMotifSequenceMatchRegionQ7TWV3212 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3213 .
?templateMotifSequenceMatchBeginQ7TWV3213 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3208 ;
faldo:reference isoform:Q7TWV3-1 .
?templateMotifSequenceProfileAlignmentOperationQ7TWV3214 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
?targetMotifMatch215 faldo:location ?targetMotifMatchRegionMatch216 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259218 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259209 .
?targetMotifMatchRegionMatch216 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259217 .
?targetMotifMatchRegionMatchBeginMF_01259217 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259210 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01259218 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259207, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259207) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259207, CONCAT('^(?:-*[^-]){', STR(((151 - ?templateMotifSequenceMatchBeginPositionQ7TWV3208) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1219) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259209, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259209) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259209, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259209) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), '')))), '[^-]', ''))) AS ?step2220) .
BIND(((?step2220 + ?targetMotifMatchRegionMatchBeginPositionMF_01259210) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs1t221) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01259a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch226 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3227 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3229 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7TWV3MF_01259222 .
?templateMotifSequenceMatchRegionQ7TWV3227 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3228 .
?templateMotifSequenceMatchBeginQ7TWV3228 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3223 ;
faldo:reference isoform:Q7TWV3-1 .
?templateMotifSequenceProfileAlignmentOperationQ7TWV3229 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
?targetMotifMatch230 faldo:location ?targetMotifMatchRegionMatch231 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259233 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259224 .
?targetMotifMatchRegionMatch231 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259232 .
?targetMotifMatchRegionMatchBeginMF_01259232 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259225 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01259233 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259222, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259222) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259222, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionQ7TWV3223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259224, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259224) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259224, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259224) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) .
BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_01259225) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs1t236) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse66) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01259a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch241 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3242 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3244 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7TWV3MF_01259237 .
?templateMotifSequenceMatchRegionQ7TWV3242 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3243 .
?templateMotifSequenceMatchBeginQ7TWV3243 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3238 ;
faldo:reference isoform:Q7TWV3-1 .
?templateMotifSequenceProfileAlignmentOperationQ7TWV3244 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
?targetMotifMatch245 faldo:location ?targetMotifMatchRegionMatch246 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259248 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259239 .
?targetMotifMatchRegionMatch246 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259247 .
?targetMotifMatchRegionMatchBeginMF_01259247 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259240 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01259248 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259237, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259237) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259237, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionQ7TWV3238) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1249) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259239, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259239) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259239, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259239) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), '')))), '[^-]', ''))) AS ?step2250) .
BIND(((?step2250 + ?targetMotifMatchRegionMatchBeginPositionMF_01259240) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs1t251) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01259a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch256 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3257 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3259 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7TWV3MF_01259252 .
?templateMotifSequenceMatchRegionQ7TWV3257 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3258 .
?templateMotifSequenceMatchBeginQ7TWV3258 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3253 ;
faldo:reference isoform:Q7TWV3-1 .
?templateMotifSequenceProfileAlignmentOperationQ7TWV3259 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
?targetMotifMatch260 faldo:location ?targetMotifMatchRegionMatch261 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259263 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259254 .
?targetMotifMatchRegionMatch261 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259262 .
?targetMotifMatchRegionMatchBeginMF_01259262 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259255 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01259263 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259252, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259252) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259252, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionQ7TWV3253) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1264) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259254, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259254) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259254, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259254) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), '')))), '[^-]', ''))) AS ?step2265) .
BIND(((?step2265 + ?targetMotifMatchRegionMatchBeginPositionMF_01259255) - 1) AS ?thisPositionOn82) .
BIND(?thisPositionOn82 AS ?thisPositionOn83) .
BIND(?this AS ?pfs1t266) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse80) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01259a78')) AS ?annotation78) .
BIND(?this AS ?pfs77) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch271 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3272 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3274 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7TWV3MF_01259267 .
?templateMotifSequenceMatchRegionQ7TWV3272 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3273 .
?templateMotifSequenceMatchBeginQ7TWV3273 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3268 ;
faldo:reference isoform:Q7TWV3-1 .
?templateMotifSequenceProfileAlignmentOperationQ7TWV3274 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
?targetMotifMatch275 faldo:location ?targetMotifMatchRegionMatch276 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259278 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259269 .
?targetMotifMatchRegionMatch276 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259277 .
?targetMotifMatchRegionMatchBeginMF_01259277 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259270 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01259278 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259267, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259267) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259267, CONCAT('^(?:-*[^-]){', STR(((288 - ?templateMotifSequenceMatchBeginPositionQ7TWV3268) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1279) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259269, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259269) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259269, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259269) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), '')))), '[^-]', ''))) AS ?step2280) .
BIND(((?step2280 + ?targetMotifMatchRegionMatchBeginPositionMF_01259270) - 1) AS ?thisPositionOn89) .
BIND(?thisPositionOn89 AS ?thisPositionOn90) .
BIND(?this AS ?pfs1t281) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse87) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn89, 1) = 'A')) .
BIND(URI(CONCAT(STR(?this), '#MF_01259a85')) AS ?annotation85) .
BIND(?this AS ?pfs84) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch286 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3287 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3289 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7TWV3MF_01259282 .
?templateMotifSequenceMatchRegionQ7TWV3287 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3288 .
?templateMotifSequenceMatchBeginQ7TWV3288 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3283 ;
faldo:reference isoform:Q7TWV3-1 .
?templateMotifSequenceProfileAlignmentOperationQ7TWV3289 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
?targetMotifMatch290 faldo:location ?targetMotifMatchRegionMatch291 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259293 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259284 .
?targetMotifMatchRegionMatch291 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259292 .
?targetMotifMatchRegionMatchBeginMF_01259292 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259285 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01259293 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259282, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259282) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259282, CONCAT('^(?:-*[^-]){', STR(((320 - ?templateMotifSequenceMatchBeginPositionQ7TWV3283) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1294) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259284, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259284) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259284, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259284) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), '')))), '[^-]', ''))) AS ?step2295) .
BIND(((?step2295 + ?targetMotifMatchRegionMatchBeginPositionMF_01259285) - 1) AS ?thisPositionOn96) .
BIND(?thisPositionOn96 AS ?thisPositionOn97) .
BIND(?this AS ?pfs1t296) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse94) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn96, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01259a92')) AS ?annotation92) .
BIND(?this AS ?pfs91) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch301 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3302 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3304 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7TWV3MF_01259297 .
?templateMotifSequenceMatchRegionQ7TWV3302 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3303 .
?templateMotifSequenceMatchBeginQ7TWV3303 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3298 ;
faldo:reference isoform:Q7TWV3-1 .
?templateMotifSequenceProfileAlignmentOperationQ7TWV3304 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
?targetMotifMatch305 faldo:location ?targetMotifMatchRegionMatch306 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259308 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259299 .
?targetMotifMatchRegionMatch306 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259307 .
?targetMotifMatchRegionMatchBeginMF_01259307 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259300 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01259308 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259297, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259297) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259297, CONCAT('^(?:-*[^-]){', STR(((399 - ?templateMotifSequenceMatchBeginPositionQ7TWV3298) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1309) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259299, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259299) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259299, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259299) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), '')))), '[^-]', ''))) AS ?step2310) .
BIND(((?step2310 + ?targetMotifMatchRegionMatchBeginPositionMF_01259300) - 1) AS ?thisPositionOn103) .
BIND(?thisPositionOn103 AS ?thisPositionOn104) .
BIND(?this AS ?pfs1t311) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse101) .
FILTER (REGEX('[GS]', SUBSTR(?thisSequenceValue, ?thisPositionOn103, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01259a99')) AS ?annotation99) .
BIND(?this AS ?pfs98) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch316 faldo:location ?templateMotifSequenceMatchRegionQ7TWV3317 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7TWV3319 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7TWV3MF_01259312 .
?templateMotifSequenceMatchRegionQ7TWV3317 faldo:begin ?templateMotifSequenceMatchBeginQ7TWV3318 .
?templateMotifSequenceMatchBeginQ7TWV3318 faldo:position ?templateMotifSequenceMatchBeginPositionQ7TWV3313 ;
faldo:reference isoform:Q7TWV3-1 .
?templateMotifSequenceProfileAlignmentOperationQ7TWV3319 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
?targetMotifMatch320 faldo:location ?targetMotifMatchRegionMatch321 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01259323 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7TWV3MF_01259314 .
?targetMotifMatchRegionMatch321 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01259322 .
?targetMotifMatchRegionMatchBeginMF_01259322 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01259315 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01259323 edam:has_input signature:MF_01259 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7TWV3MF_01259312, 1, (STRLEN(?templateMotifCigarQ7TWV3MF_01259312) - STRLEN(REPLACE(?templateMotifCigarQ7TWV3MF_01259312, CONCAT('^(?:-*[^-]){', STR(((436 - ?templateMotifSequenceMatchBeginPositionQ7TWV3313) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1324) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259314, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259314) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7TWV3MF_01259314, 1, (STRLEN(?targetMotifMatchCigarQ7TWV3MF_01259314) - STRLEN(REPLACE(?targetMotifMatchCigarQ7TWV3MF_01259314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), '')))), '[^-]', ''))) AS ?step2325) .
BIND(((?step2325 + ?targetMotifMatchRegionMatchBeginPositionMF_01259315) - 1) AS ?thisPositionOn110) .
BIND(?thisPositionOn110 AS ?thisPositionOn111) .
BIND(?this AS ?pfs1t326) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfsb107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfse108) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn110, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01259a106')) AS ?annotation106) .
BIND(?this AS ?pfs105) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1763 .
BIND(?this AS ?case14) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1763 .
})) .
BIND(?this AS ?case15) .
}
}
"xsd:string |
