| http://purl.uniprot.org/unirules/MF_01264#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:448472 up:source unirule:MF_01264 .
_:448473 up:source unirule:MF_01264 .
_:448474 up:source unirule:MF_01264 .
_:448475 up:source unirule:MF_01264 .
_:448476 up:source unirule:MF_01264 .
_:448477 up:source unirule:MF_01264 .
_:448478 up:source unirule:MF_01264 .
_:448479 up:source unirule:MF_01264 .
_:448480 up:source unirule:MF_01264 .
_:448481 up:source unirule:MF_01264 .
_:448482 up:source unirule:MF_01264 .
_:448483 up:source unirule:MF_01264 .
_:448484 up:source unirule:MF_01264 .
_:448485 up:source unirule:MF_01264 .
_:448486 up:source unirule:MF_01264 .
_:448487 up:source unirule:MF_01264 .
_:448488 up:source unirule:MF_01264 .
_:448489 up:source unirule:MF_01264 .
_:448490 up:source unirule:MF_01264 .
_:448491 up:source unirule:MF_01264 .
_:448492 up:source unirule:MF_01264 .
_:448493 up:source unirule:MF_01264 .
_:448494 up:source unirule:MF_01264 .
_:448495 up:source unirule:MF_01264 .
_:448496 up:source unirule:MF_01264 .
_:448497 up:source unirule:MF_01264 .
_:448498 up:source unirule:MF_01264 .
_:448499 up:source unirule:MF_01264 .
_:448500 up:source unirule:MF_01264 .
_:448501 up:source unirule:MF_01264 .
_:448502 up:source unirule:MF_01264 .
_:448503 up:source unirule:MF_01264 .
_:448504 up:source unirule:MF_01264 .
_:448505 up:source unirule:MF_01264 .
_:448506 up:source unirule:MF_01264 .
_:448507 up:source unirule:MF_01264 .
_:448508 up:source unirule:MF_01264 .
_:448509 up:source unirule:MF_01264 .
_:448510 up:source unirule:MF_01264 .
_:448511 up:source unirule:MF_01264 .
_:448512 up:source unirule:MF_01264 .
_:448513 up:source unirule:MF_01264 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ,
?name4 ,
?name5 ;
up:annotation ?annotation7 ,
?annotation8 ,
?annotation10 ,
?annotation12 ,
?annotation13 ,
?annotation14 ,
?annotation15 ;
up:classifiedWith GO:0000049 ,
GO:0000166 ,
GO:0000287 ,
GO:0001680 ,
GO:0004810 ,
GO:0005524 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:548 ,
keyword:67 ,
keyword:692 ,
keyword:694 ,
keyword:808 ,
keyword:819 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.7.72' ;
up:fullName 'CCA-adding enzyme' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'CCA tRNA nucleotidyltransferase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'tRNA CCA-pyrophosphorylase' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'tRNA adenylyl-/cytidylyl- transferase' ;
rdf:type up:Structured_Name .
?name4 up:fullName 'tRNA nucleotidyltransferase' ;
rdf:type up:Structured_Name .
?name5 up:fullName 'tRNA-NT' ;
rdf:type up:Structured_Name .
?gene6 skos:prefLabel 'cca' .
?annotation7 a up:Function_Annotation ;
rdfs:comment "Catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. tRNA 3'-terminal CCA addition is required both for tRNA processing and repair. Also involved in tRNA surveillance by mediating tandem CCA addition to generate a CCACCA at the 3' terminus of unstable tRNAs. While stable tRNAs receive only 3'-terminal CCA, unstable tRNAs are marked with CCACCA and rapidly degraded." .
?annotation8 up:activity ?activity9 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity9 up:catalyticActivity ;
up:enzymeClass .
?annotation10 up:activity ?activity11 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity11 up:catalyticActivity .
?annotation12 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation13 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation14 a up:Annotation ;
rdfs:comment 'A single active site specifically recognizes both ATP and CTP and is responsible for their addition.' .
?annotation15 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. Archaeal CCA-adding enzyme subfamily.' .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:18420 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:18420 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:18420 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:30616 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:37563 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:30616 .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf chebi:37563 .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
up:ligand ?ligand69 ;
rdf:type up:Binding_Site_Annotation .
?pfsb67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?ligand69 rdfs:subClassOf chebi:30616 .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
up:ligand ?ligand76 ;
rdf:type up:Binding_Site_Annotation .
?pfsb74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand76 rdfs:subClassOf chebi:37563 .
?pfs79 up:annotation ?annotation80 .
?annotation80 faldo:begin ?pfsb81 ;
faldo:end ?pfse82 ;
up:ligand ?ligand83 ;
rdf:type up:Binding_Site_Annotation .
?pfsb81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?ligand83 rdfs:subClassOf chebi:30616 .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
up:ligand ?ligand90 ;
rdf:type up:Binding_Site_Annotation .
?pfsb88 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?ligand90 rdfs:subClassOf chebi:37563 .
?pfs93 up:annotation ?annotation94 .
?annotation94 faldo:begin ?pfsb95 ;
faldo:end ?pfse96 ;
up:ligand ?ligand97 ;
rdf:type up:Binding_Site_Annotation .
?pfsb95 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?pfse96 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?ligand97 rdfs:subClassOf chebi:30616 .
?pfs100 up:annotation ?annotation101 .
?annotation101 faldo:begin ?pfsb102 ;
faldo:end ?pfse103 ;
up:ligand ?ligand104 ;
rdf:type up:Binding_Site_Annotation .
?pfsb102 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?pfse103 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?ligand104 rdfs:subClassOf chebi:37563 .
_:448514 a rdf:Statement ;
up:attribution _:448472 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:448515 a rdf:Statement ;
up:attribution _:448473 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:448516 a rdf:Statement ;
up:attribution _:448474 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:448517 a rdf:Statement ;
up:attribution _:448475 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:448518 a rdf:Statement ;
up:attribution _:448476 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name4 .
_:448519 a rdf:Statement ;
up:attribution _:448477 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name5 .
_:448520 a rdf:Statement ;
up:attribution _:448478 ;
rdf:subject ?gene6 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene6 .
_:448521 a rdf:Statement ;
up:attribution _:448479 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:448522 a rdf:Statement ;
up:attribution _:448480 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:448523 a rdf:Statement ;
up:attribution _:448481 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:448524 a rdf:Statement ;
up:attribution _:448482 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:448525 a rdf:Statement ;
up:attribution _:448483 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:448526 a rdf:Statement ;
up:attribution _:448484 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:448527 a rdf:Statement ;
up:attribution _:448485 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:448528 a rdf:Statement ;
up:attribution _:448486 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:448529 a rdf:Statement ;
up:attribution _:448487 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:448530 a rdf:Statement ;
up:attribution _:448488 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:448531 a rdf:Statement ;
up:attribution _:448489 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:448532 a rdf:Statement ;
up:attribution _:448490 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:448533 a rdf:Statement ;
up:attribution _:448491 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:692 .
_:448534 a rdf:Statement ;
up:attribution _:448492 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:448535 a rdf:Statement ;
up:attribution _:448493 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:448536 a rdf:Statement ;
up:attribution _:448494 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:448537 a rdf:Statement ;
up:attribution _:448495 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000049 .
_:448538 a rdf:Statement ;
up:attribution _:448496 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000166 .
_:448539 a rdf:Statement ;
up:attribution _:448497 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:448540 a rdf:Statement ;
up:attribution _:448498 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004810 .
_:448541 a rdf:Statement ;
up:attribution _:448499 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:448542 a rdf:Statement ;
up:attribution _:448500 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0001680 .
_:448543 a rdf:Statement ;
up:source unirule:MF_01264 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:448544 a rdf:Statement ;
up:attribution _:448501 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:448545 a rdf:Statement ;
up:source unirule:MF_01264 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:448546 a rdf:Statement ;
up:attribution _:448502 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:448547 a rdf:Statement ;
up:source unirule:MF_01264 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:448548 a rdf:Statement ;
up:attribution _:448503 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:448549 a rdf:Statement ;
up:source unirule:MF_01264 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:448550 a rdf:Statement ;
up:attribution _:448504 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:448551 a rdf:Statement ;
up:source unirule:MF_01264 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:448552 a rdf:Statement ;
up:attribution _:448505 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:448553 a rdf:Statement ;
up:source unirule:MF_01264 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:448554 a rdf:Statement ;
up:attribution _:448506 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:448555 a rdf:Statement ;
up:source unirule:MF_01264 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:448556 a rdf:Statement ;
up:attribution _:448507 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:448557 a rdf:Statement ;
up:source unirule:MF_01264 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:448558 a rdf:Statement ;
up:attribution _:448508 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:448559 a rdf:Statement ;
up:source unirule:MF_01264 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:448560 a rdf:Statement ;
up:attribution _:448509 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:448561 a rdf:Statement ;
up:source unirule:MF_01264 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:448562 a rdf:Statement ;
up:attribution _:448510 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:448563 a rdf:Statement ;
up:source unirule:MF_01264 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:448564 a rdf:Statement ;
up:attribution _:448511 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:448565 a rdf:Statement ;
up:source unirule:MF_01264 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:448566 a rdf:Statement ;
up:attribution _:448512 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:448567 a rdf:Statement ;
up:source unirule:MF_01264 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:448568 a rdf:Statement ;
up:attribution _:448513 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01264
#Rule MF_01264 Created by:? on:2005-07-29 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01264 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_01264a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a4')) AS ?name4) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a5')) AS ?name5) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a13')) AS ?annotation13) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a14')) AS ?annotation14) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a15')) AS ?annotation15) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch111 faldo:location ?templateMotifSequenceMatchRegionO28126112 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126114 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO28126MF_01264107 .
?templateMotifSequenceMatchRegionO28126112 faldo:begin ?templateMotifSequenceMatchBeginO28126113 .
?templateMotifSequenceMatchBeginO28126113 faldo:position ?templateMotifSequenceMatchBeginPositionO28126108 ;
faldo:reference isoform:O28126-1 .
?templateMotifSequenceProfileAlignmentOperationO28126114 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
?targetMotifMatch115 faldo:location ?targetMotifMatchRegionMatch116 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264118 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO28126MF_01264109 .
?targetMotifMatchRegionMatch116 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264117 .
?targetMotifMatchRegionMatchBeginMF_01264117 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264110 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01264118 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264107, 1, (STRLEN(?templateMotifCigarO28126MF_01264107) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264107, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionO28126108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264109, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264109) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264109, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264109) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) .
BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_01264110) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch126 faldo:location ?templateMotifSequenceMatchRegionO28126127 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126129 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO28126MF_01264122 .
?templateMotifSequenceMatchRegionO28126127 faldo:begin ?templateMotifSequenceMatchBeginO28126128 .
?templateMotifSequenceMatchBeginO28126128 faldo:position ?templateMotifSequenceMatchBeginPositionO28126123 ;
faldo:reference isoform:O28126-1 .
?templateMotifSequenceProfileAlignmentOperationO28126129 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
?targetMotifMatch130 faldo:location ?targetMotifMatchRegionMatch131 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264133 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO28126MF_01264124 .
?targetMotifMatchRegionMatch131 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264132 .
?targetMotifMatchRegionMatchBeginMF_01264132 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264125 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01264133 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264122, 1, (STRLEN(?templateMotifCigarO28126MF_01264122) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264122, CONCAT('^(?:-*[^-]){', STR(((61 - ?templateMotifSequenceMatchBeginPositionO28126123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264124, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264124) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264124, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264124) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) .
BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_01264125) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t136) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch141 faldo:location ?templateMotifSequenceMatchRegionO28126142 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126144 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO28126MF_01264137 .
?templateMotifSequenceMatchRegionO28126142 faldo:begin ?templateMotifSequenceMatchBeginO28126143 .
?templateMotifSequenceMatchBeginO28126143 faldo:position ?templateMotifSequenceMatchBeginPositionO28126138 ;
faldo:reference isoform:O28126-1 .
?templateMotifSequenceProfileAlignmentOperationO28126144 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
?targetMotifMatch145 faldo:location ?targetMotifMatchRegionMatch146 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264148 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO28126MF_01264139 .
?targetMotifMatchRegionMatch146 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264147 .
?targetMotifMatchRegionMatchBeginMF_01264147 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264140 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01264148 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264137, 1, (STRLEN(?templateMotifCigarO28126MF_01264137) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264137, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionO28126138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264139, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264139) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264139, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264139) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) .
BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_01264140) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t151) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch156 faldo:location ?templateMotifSequenceMatchRegionO28126157 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126159 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO28126MF_01264152 .
?templateMotifSequenceMatchRegionO28126157 faldo:begin ?templateMotifSequenceMatchBeginO28126158 .
?templateMotifSequenceMatchBeginO28126158 faldo:position ?templateMotifSequenceMatchBeginPositionO28126153 ;
faldo:reference isoform:O28126-1 .
?templateMotifSequenceProfileAlignmentOperationO28126159 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
?targetMotifMatch160 faldo:location ?targetMotifMatchRegionMatch161 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264163 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO28126MF_01264154 .
?targetMotifMatchRegionMatch161 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264162 .
?targetMotifMatchRegionMatchBeginMF_01264162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264155 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01264163 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264152, 1, (STRLEN(?templateMotifCigarO28126MF_01264152) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264152, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionO28126153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264154, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264154) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264154, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264154) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) .
BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_01264155) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t166) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch171 faldo:location ?templateMotifSequenceMatchRegionO28126172 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126174 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO28126MF_01264167 .
?templateMotifSequenceMatchRegionO28126172 faldo:begin ?templateMotifSequenceMatchBeginO28126173 .
?templateMotifSequenceMatchBeginO28126173 faldo:position ?templateMotifSequenceMatchBeginPositionO28126168 ;
faldo:reference isoform:O28126-1 .
?templateMotifSequenceProfileAlignmentOperationO28126174 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
?targetMotifMatch175 faldo:location ?targetMotifMatchRegionMatch176 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264178 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO28126MF_01264169 .
?targetMotifMatchRegionMatch176 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264177 .
?targetMotifMatchRegionMatchBeginMF_01264177 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264170 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01264178 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264167, 1, (STRLEN(?templateMotifCigarO28126MF_01264167) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264167, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionO28126168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264169, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264169) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264169, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264169) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), '')))), '[^-]', ''))) AS ?step2180) .
BIND(((?step2180 + ?targetMotifMatchRegionMatchBeginPositionMF_01264170) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t181) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch186 faldo:location ?templateMotifSequenceMatchRegionO28126187 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126189 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO28126MF_01264182 .
?templateMotifSequenceMatchRegionO28126187 faldo:begin ?templateMotifSequenceMatchBeginO28126188 .
?templateMotifSequenceMatchBeginO28126188 faldo:position ?templateMotifSequenceMatchBeginPositionO28126183 ;
faldo:reference isoform:O28126-1 .
?templateMotifSequenceProfileAlignmentOperationO28126189 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
?targetMotifMatch190 faldo:location ?targetMotifMatchRegionMatch191 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264193 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO28126MF_01264184 .
?targetMotifMatchRegionMatch191 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264192 .
?targetMotifMatchRegionMatchBeginMF_01264192 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264185 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01264193 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264182, 1, (STRLEN(?templateMotifCigarO28126MF_01264182) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264182, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionO28126183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264184, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264184) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264184, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264184) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), '')))), '[^-]', ''))) AS ?step2195) .
BIND(((?step2195 + ?targetMotifMatchRegionMatchBeginPositionMF_01264185) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t196) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch201 faldo:location ?templateMotifSequenceMatchRegionO28126202 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126204 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO28126MF_01264197 .
?templateMotifSequenceMatchRegionO28126202 faldo:begin ?templateMotifSequenceMatchBeginO28126203 .
?templateMotifSequenceMatchBeginO28126203 faldo:position ?templateMotifSequenceMatchBeginPositionO28126198 ;
faldo:reference isoform:O28126-1 .
?templateMotifSequenceProfileAlignmentOperationO28126204 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
?targetMotifMatch205 faldo:location ?targetMotifMatchRegionMatch206 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264208 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO28126MF_01264199 .
?targetMotifMatchRegionMatch206 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264207 .
?targetMotifMatchRegionMatchBeginMF_01264207 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264200 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01264208 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264197, 1, (STRLEN(?templateMotifCigarO28126MF_01264197) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264197, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionO28126198) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1209) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264199, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264199) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264199, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264199) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), '')))), '[^-]', ''))) AS ?step2210) .
BIND(((?step2210 + ?targetMotifMatchRegionMatchBeginPositionMF_01264200) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs1t211) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch216 faldo:location ?templateMotifSequenceMatchRegionO28126217 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126219 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO28126MF_01264212 .
?templateMotifSequenceMatchRegionO28126217 faldo:begin ?templateMotifSequenceMatchBeginO28126218 .
?templateMotifSequenceMatchBeginO28126218 faldo:position ?templateMotifSequenceMatchBeginPositionO28126213 ;
faldo:reference isoform:O28126-1 .
?templateMotifSequenceProfileAlignmentOperationO28126219 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
?targetMotifMatch220 faldo:location ?targetMotifMatchRegionMatch221 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264223 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO28126MF_01264214 .
?targetMotifMatchRegionMatch221 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264222 .
?targetMotifMatchRegionMatchBeginMF_01264222 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264215 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01264223 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264212, 1, (STRLEN(?templateMotifCigarO28126MF_01264212) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264212, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionO28126213) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1224) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264214, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264214) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264214, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264214) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), '')))), '[^-]', ''))) AS ?step2225) .
BIND(((?step2225 + ?targetMotifMatchRegionMatchBeginPositionMF_01264215) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs1t226) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch231 faldo:location ?templateMotifSequenceMatchRegionO28126232 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126234 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO28126MF_01264227 .
?templateMotifSequenceMatchRegionO28126232 faldo:begin ?templateMotifSequenceMatchBeginO28126233 .
?templateMotifSequenceMatchBeginO28126233 faldo:position ?templateMotifSequenceMatchBeginPositionO28126228 ;
faldo:reference isoform:O28126-1 .
?templateMotifSequenceProfileAlignmentOperationO28126234 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
?targetMotifMatch235 faldo:location ?targetMotifMatchRegionMatch236 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264238 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO28126MF_01264229 .
?targetMotifMatchRegionMatch236 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264237 .
?targetMotifMatchRegionMatchBeginMF_01264237 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264230 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01264238 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264227, 1, (STRLEN(?templateMotifCigarO28126MF_01264227) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264227, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionO28126228) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1239) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264229, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264229) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264229, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264229) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), '')))), '[^-]', ''))) AS ?step2240) .
BIND(((?step2240 + ?targetMotifMatchRegionMatchBeginPositionMF_01264230) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs1t241) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch246 faldo:location ?templateMotifSequenceMatchRegionO28126247 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126249 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO28126MF_01264242 .
?templateMotifSequenceMatchRegionO28126247 faldo:begin ?templateMotifSequenceMatchBeginO28126248 .
?templateMotifSequenceMatchBeginO28126248 faldo:position ?templateMotifSequenceMatchBeginPositionO28126243 ;
faldo:reference isoform:O28126-1 .
?templateMotifSequenceProfileAlignmentOperationO28126249 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
?targetMotifMatch250 faldo:location ?targetMotifMatchRegionMatch251 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264253 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO28126MF_01264244 .
?targetMotifMatchRegionMatch251 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264252 .
?targetMotifMatchRegionMatchBeginMF_01264252 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264245 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01264253 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264242, 1, (STRLEN(?templateMotifCigarO28126MF_01264242) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264242, CONCAT('^(?:-*[^-]){', STR(((152 - ?templateMotifSequenceMatchBeginPositionO28126243) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1254) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264244, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264244) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264244, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1254), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264244, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264244) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264244, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1254), '}'), '')))), '[^-]', ''))) AS ?step2255) .
BIND(((?step2255 + ?targetMotifMatchRegionMatchBeginPositionMF_01264245) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs1t256) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse82) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a80')) AS ?annotation80) .
BIND(?this AS ?pfs79) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch261 faldo:location ?templateMotifSequenceMatchRegionO28126262 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126264 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO28126MF_01264257 .
?templateMotifSequenceMatchRegionO28126262 faldo:begin ?templateMotifSequenceMatchBeginO28126263 .
?templateMotifSequenceMatchBeginO28126263 faldo:position ?templateMotifSequenceMatchBeginPositionO28126258 ;
faldo:reference isoform:O28126-1 .
?templateMotifSequenceProfileAlignmentOperationO28126264 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
?targetMotifMatch265 faldo:location ?targetMotifMatchRegionMatch266 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264268 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO28126MF_01264259 .
?targetMotifMatchRegionMatch266 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264267 .
?targetMotifMatchRegionMatchBeginMF_01264267 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264260 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01264268 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264257, 1, (STRLEN(?templateMotifCigarO28126MF_01264257) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264257, CONCAT('^(?:-*[^-]){', STR(((152 - ?templateMotifSequenceMatchBeginPositionO28126258) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1269) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264259, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264259) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264259, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1269), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264259, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264259) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264259, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1269), '}'), '')))), '[^-]', ''))) AS ?step2270) .
BIND(((?step2270 + ?targetMotifMatchRegionMatchBeginPositionMF_01264260) - 1) AS ?thisPositionOn91) .
BIND(?thisPositionOn91 AS ?thisPositionOn92) .
BIND(?this AS ?pfs1t271) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse89) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch276 faldo:location ?templateMotifSequenceMatchRegionO28126277 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126279 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO28126MF_01264272 .
?templateMotifSequenceMatchRegionO28126277 faldo:begin ?templateMotifSequenceMatchBeginO28126278 .
?templateMotifSequenceMatchBeginO28126278 faldo:position ?templateMotifSequenceMatchBeginPositionO28126273 ;
faldo:reference isoform:O28126-1 .
?templateMotifSequenceProfileAlignmentOperationO28126279 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
?targetMotifMatch280 faldo:location ?targetMotifMatchRegionMatch281 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264283 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO28126MF_01264274 .
?targetMotifMatchRegionMatch281 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264282 .
?targetMotifMatchRegionMatchBeginMF_01264282 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264275 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01264283 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264272, 1, (STRLEN(?templateMotifCigarO28126MF_01264272) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264272, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionO28126273) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1284) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264274, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264274) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264274, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1284), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264274, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264274) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264274, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1284), '}'), '')))), '[^-]', ''))) AS ?step2285) .
BIND(((?step2285 + ?targetMotifMatchRegionMatchBeginPositionMF_01264275) - 1) AS ?thisPositionOn98) .
BIND(?thisPositionOn98 AS ?thisPositionOn99) .
BIND(?this AS ?pfs1t286) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfsb95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfse96) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn98, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a94')) AS ?annotation94) .
BIND(?this AS ?pfs93) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch291 faldo:location ?templateMotifSequenceMatchRegionO28126292 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO28126294 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO28126MF_01264287 .
?templateMotifSequenceMatchRegionO28126292 faldo:begin ?templateMotifSequenceMatchBeginO28126293 .
?templateMotifSequenceMatchBeginO28126293 faldo:position ?templateMotifSequenceMatchBeginPositionO28126288 ;
faldo:reference isoform:O28126-1 .
?templateMotifSequenceProfileAlignmentOperationO28126294 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
?targetMotifMatch295 faldo:location ?targetMotifMatchRegionMatch296 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01264298 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO28126MF_01264289 .
?targetMotifMatchRegionMatch296 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01264297 .
?targetMotifMatchRegionMatchBeginMF_01264297 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01264290 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01264298 edam:has_input signature:MF_01264 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO28126MF_01264287, 1, (STRLEN(?templateMotifCigarO28126MF_01264287) - STRLEN(REPLACE(?templateMotifCigarO28126MF_01264287, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionO28126288) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1299) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO28126MF_01264289, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264289) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264289, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1299), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO28126MF_01264289, 1, (STRLEN(?targetMotifMatchCigarO28126MF_01264289) - STRLEN(REPLACE(?targetMotifMatchCigarO28126MF_01264289, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1299), '}'), '')))), '[^-]', ''))) AS ?step2300) .
BIND(((?step2300 + ?targetMotifMatchRegionMatchBeginPositionMF_01264290) - 1) AS ?thisPositionOn105) .
BIND(?thisPositionOn105 AS ?thisPositionOn106) .
BIND(?this AS ?pfs1t301) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse103) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01264a101')) AS ?annotation101) .
BIND(?this AS ?pfs100) .
}
}
"xsd:string |
