| http://purl.uniprot.org/unirules/MF_01383#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:500046 up:source unirule:MF_01383 .
_:500047 up:source unirule:MF_01383 .
_:500048 up:source unirule:MF_01383 .
_:500049 up:source unirule:MF_01383 .
_:500050 up:source unirule:MF_01383 .
_:500051 up:source unirule:MF_01383 .
_:500052 up:source unirule:MF_01383 .
_:500053 up:source unirule:MF_01383 .
_:500054 up:source unirule:MF_01383 .
_:500055 up:source unirule:MF_01383 .
_:500056 up:source unirule:MF_01383 .
_:500057 up:source unirule:MF_01383 .
_:500058 up:source unirule:MF_01383 .
_:500059 up:source unirule:MF_01383 .
_:500060 up:source unirule:MF_01383 .
_:500061 up:source unirule:MF_01383 .
_:500062 up:source unirule:MF_01383 .
_:500063 up:source unirule:MF_01383 .
_:500064 up:source unirule:MF_01383 .
_:500065 up:source unirule:MF_01383 .
_:500066 up:source unirule:MF_01383 .
_:500067 up:source unirule:MF_01383 .
_:500068 up:source unirule:MF_01383 .
_:500069 up:source unirule:MF_01383 .
_:500070 up:source unirule:MF_01383 .
_:500071 up:source unirule:MF_01383 .
_:500072 up:source unirule:MF_01383 .
_:500073 up:source unirule:MF_01383 .
_:500074 up:source unirule:MF_01383 .
_:500075 up:source unirule:MF_01383 .
_:500076 up:source unirule:MF_01383 .
_:500077 up:source unirule:MF_01383 .
_:500078 up:source unirule:MF_01383 .
_:500079 up:source unirule:MF_01383 .
_:500080 up:source unirule:MF_01383 .
_:500081 up:source unirule:MF_01383 .
_:500082 up:source unirule:MF_01383 .
_:500083 up:source unirule:MF_01383 .
_:500084 up:source unirule:MF_01383 .
_:500085 up:source unirule:MF_01383 .
_:500086 up:source unirule:MF_01383 .
_:500087 up:source unirule:MF_01383 .
_:500088 up:source unirule:MF_01383 .
_:500089 up:source unirule:MF_01383 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0005506 ,
GO:0009055 ,
GO:0015979 ,
GO:0016168 ,
keyword:1133 ,
keyword:148 ,
keyword:157 ,
keyword:249 ,
keyword:408 ,
keyword:460 ,
keyword:472 ,
keyword:479 ,
keyword:560 ,
keyword:602 ,
keyword:604 ,
keyword:812 ,
keyword:813 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.10.3.9' ;
up:fullName 'Photosystem II D2 protein' ;
up:shortName 'PSII D2 protein' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Photosystem Q(A) protein' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'psbD' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Photosystem II (PSII) is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. The D1/D2 (PsbA/PsbD) reaction center heterodimer binds P680, the primary electron donor of PSII as well as several subsequent electron acceptors. D2 is needed for assembly of a stable PSII complex.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Cofactor_Annotation ;
rdfs:comment 'The D1/D2 heterodimer binds P680, chlorophylls that are the primary electron donor of PSII, and subsequent electron acceptors. It shares a non-heme iron and each subunit binds pheophytin, quinone, additional chlorophylls, carotenoids and lipids. There is also a Cl(-1) ion associated with D1 and D2, which is required for oxygen evolution. The PSII complex binds additional chlorophylls, carotenoids and specific lipids.' .
?annotation7 a up:Annotation ;
rdfs:comment '2 of the reaction center chlorophylls (ChlD1 and ChlD2) are entirely coordinated by water.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the reaction center PufL/M/PsbA/D family.' .
?case9 up:classifiedWith GO:0009535 .
?case10 up:classifiedWith keyword:1003 ,
keyword:997 .
?case12 up:classifiedWith keyword:793 .
?case14 up:classifiedWith GO:0005886 .
?case15 up:classifiedWith GO:0042651 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand50 up:ligandPart ?ligand50 ;
rdfs:subClassOf chebi:25107 ,
chebi:58416 .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'axial binding residue' .
?pfsb55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand57 up:ligandPart ?ligand57 ;
rdfs:subClassOf chebi:25107 ,
chebi:58416 .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf chebi:24875 .
?pfs67 up:annotation ?annotation68 .
?annotation68 faldo:begin ?pfsb69 ;
faldo:end ?pfse70 ;
up:ligand ?ligand71 ;
rdf:type up:Binding_Site_Annotation .
?pfsb69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?ligand71 rdfs:subClassOf chebi:24875 .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
up:ligand ?ligand78 ;
rdf:type up:Binding_Site_Annotation .
?pfsb76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?ligand78 rdfs:subClassOf chebi:136840 .
?pfs81 up:annotation ?annotation82 .
?annotation82 faldo:begin ?pfsb83 ;
faldo:end ?pfse84 ;
up:ligand ?ligand85 ;
rdf:type up:Binding_Site_Annotation .
?pfsb83 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfse84 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?ligand85 rdfs:subClassOf chebi:136840 .
?pfs88 up:annotation ?annotation89 .
?annotation89 faldo:begin ?pfsb90 ;
faldo:end ?pfse91 ;
up:ligand ?ligand92 ;
rdf:type up:Binding_Site_Annotation .
?pfsb90 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?pfse91 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?ligand92 rdfs:subClassOf chebi:17757 .
?pfs95 up:annotation ?annotation96 .
?annotation96 faldo:begin ?pfsb97 ;
faldo:end ?pfse98 ;
up:ligand ?ligand99 ;
rdf:type up:Binding_Site_Annotation .
?pfsb97 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?pfse98 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?ligand99 rdfs:subClassOf chebi:17757 .
_:500090 a rdf:Statement ;
up:attribution _:500046 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:500091 a rdf:Statement ;
up:attribution _:500047 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:500092 a rdf:Statement ;
up:attribution _:500048 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:500093 a rdf:Statement ;
up:attribution _:500049 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:500094 a rdf:Statement ;
up:attribution _:500050 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:500095 a rdf:Statement ;
up:attribution _:500051 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:500096 a rdf:Statement ;
up:attribution _:500052 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:500097 a rdf:Statement ;
up:attribution _:500053 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:500098 a rdf:Statement ;
up:attribution _:500054 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:148 .
_:500099 a rdf:Statement ;
up:attribution _:500055 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:157 .
_:500100 a rdf:Statement ;
up:attribution _:500056 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:249 .
_:500101 a rdf:Statement ;
up:attribution _:500057 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:500102 a rdf:Statement ;
up:attribution _:500058 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:500103 a rdf:Statement ;
up:attribution _:500059 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:500104 a rdf:Statement ;
up:attribution _:500060 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:500105 a rdf:Statement ;
up:attribution _:500061 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:500106 a rdf:Statement ;
up:attribution _:500062 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:602 .
_:500107 a rdf:Statement ;
up:attribution _:500063 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:604 .
_:500108 a rdf:Statement ;
up:attribution _:500064 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:500109 a rdf:Statement ;
up:attribution _:500065 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:813 .
_:500110 a rdf:Statement ;
up:attribution _:500066 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:500111 a rdf:Statement ;
up:attribution _:500067 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016168 .
_:500112 a rdf:Statement ;
up:attribution _:500068 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009055 .
_:500113 a rdf:Statement ;
up:attribution _:500069 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005506 .
_:500114 a rdf:Statement ;
up:attribution _:500070 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015979 .
_:500115 a rdf:Statement ;
up:attribution _:500071 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009535 .
_:500116 a rdf:Statement ;
up:attribution _:500072 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:500117 a rdf:Statement ;
up:attribution _:500073 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:500118 a rdf:Statement ;
up:attribution _:500074 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:793 .
_:500119 a rdf:Statement ;
up:attribution _:500075 ;
rdf:subject ?case14 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:500120 a rdf:Statement ;
up:attribution _:500076 ;
rdf:subject ?case15 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042651 .
_:500121 a rdf:Statement ;
up:source unirule:MF_01383 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:500122 a rdf:Statement ;
up:attribution _:500077 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:500123 a rdf:Statement ;
up:source unirule:MF_01383 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:500124 a rdf:Statement ;
up:attribution _:500078 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:500125 a rdf:Statement ;
up:source unirule:MF_01383 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:500126 a rdf:Statement ;
up:attribution _:500079 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:500127 a rdf:Statement ;
up:source unirule:MF_01383 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:500128 a rdf:Statement ;
up:attribution _:500080 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:500129 a rdf:Statement ;
up:source unirule:MF_01383 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:500130 a rdf:Statement ;
up:attribution _:500081 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:500131 a rdf:Statement ;
up:source unirule:MF_01383 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:500132 a rdf:Statement ;
up:attribution _:500082 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:500133 a rdf:Statement ;
up:source unirule:MF_01383 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:500134 a rdf:Statement ;
up:attribution _:500083 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:500135 a rdf:Statement ;
up:source unirule:MF_01383 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:500136 a rdf:Statement ;
up:attribution _:500084 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:500137 a rdf:Statement ;
up:source unirule:MF_01383 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:500138 a rdf:Statement ;
up:attribution _:500085 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:500139 a rdf:Statement ;
up:source unirule:MF_01383 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:500140 a rdf:Statement ;
up:attribution _:500086 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:500141 a rdf:Statement ;
up:source unirule:MF_01383 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:500142 a rdf:Statement ;
up:attribution _:500087 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:500143 a rdf:Statement ;
up:source unirule:MF_01383 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:500144 a rdf:Statement ;
up:attribution _:500088 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:500145 a rdf:Statement ;
up:source unirule:MF_01383 ;
rdf:subject ?pfs95 ;
rdf:predicate up:annotation ;
rdf:object ?annotation96 .
_:500146 a rdf:Statement ;
up:attribution _:500089 ;
rdf:subject ?pfs95 ;
rdf:predicate up:annotation ;
rdf:object ?annotation96 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01383
#Rule MF_01383 Created by:? on:2008-12-02 Modified by:Edouard de Castro on:2024-09-02
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01383 .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
} UNION {
?this rdfs:seeAlso signature:MF_01383 .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
} UNION {
?this up:encodedIn up:Cyanelle .
} UNION {
?this up:encodedIn up:Apicoplast .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
} UNION {
?this up:encodedIn up:Non-photosynthetic_plastid .
}
}
BIND(URI(CONCAT(STR(?this), '#MF_01383a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01383a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01383a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01383a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01383a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01383a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01383a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionD0VWR8107 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0VWR8109 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD0VWR8MF_01383102 .
?templateMotifSequenceMatchRegionD0VWR8107 faldo:begin ?templateMotifSequenceMatchBeginD0VWR8108 .
?templateMotifSequenceMatchBeginD0VWR8108 faldo:position ?templateMotifSequenceMatchBeginPositionD0VWR8103 ;
faldo:reference isoform:D0VWR8-1 .
?templateMotifSequenceProfileAlignmentOperationD0VWR8109 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01383113 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD0VWR8MF_01383104 .
?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01383112 .
?targetMotifMatchRegionMatchBeginMF_01383112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01383105 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01383113 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR8MF_01383102, 1, (STRLEN(?templateMotifCigarD0VWR8MF_01383102) - STRLEN(REPLACE(?templateMotifCigarD0VWR8MF_01383102, CONCAT('^(?:-*[^-]){', STR(((30 - ?templateMotifSequenceMatchBeginPositionD0VWR8103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383104, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383104) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383104, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383104) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) .
BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_01383105) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR8MF_01383102, 1, (STRLEN(?templateMotifCigarD0VWR8MF_01383102) - STRLEN(REPLACE(?templateMotifCigarD0VWR8MF_01383102, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionD0VWR8103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383104, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383104) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383104, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383104) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) .
BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_01383105) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER ((BOUND(?thisPositionOn20) && BOUND(?thisPositionOn21))) .
BIND(URI(CONCAT(STR(?this), '#MF_01383a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch123 faldo:location ?templateMotifSequenceMatchRegionD0VWR8124 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0VWR8126 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD0VWR8MF_01383119 .
?templateMotifSequenceMatchRegionD0VWR8124 faldo:begin ?templateMotifSequenceMatchBeginD0VWR8125 .
?templateMotifSequenceMatchBeginD0VWR8125 faldo:position ?templateMotifSequenceMatchBeginPositionD0VWR8120 ;
faldo:reference isoform:D0VWR8-1 .
?templateMotifSequenceProfileAlignmentOperationD0VWR8126 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
?targetMotifMatch127 faldo:location ?targetMotifMatchRegionMatch128 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01383130 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD0VWR8MF_01383121 .
?targetMotifMatchRegionMatch128 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01383129 .
?targetMotifMatchRegionMatchBeginMF_01383129 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01383122 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01383130 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR8MF_01383119, 1, (STRLEN(?templateMotifCigarD0VWR8MF_01383119) - STRLEN(REPLACE(?templateMotifCigarD0VWR8MF_01383119, CONCAT('^(?:-*[^-]){', STR(((114 - ?templateMotifSequenceMatchBeginPositionD0VWR8120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383121, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383121) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383121, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383121) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) .
BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_01383122) - 1) AS ?thisPositionOn26) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR8MF_01383119, 1, (STRLEN(?templateMotifCigarD0VWR8MF_01383119) - STRLEN(REPLACE(?templateMotifCigarD0VWR8MF_01383119, CONCAT('^(?:-*[^-]){', STR(((130 - ?templateMotifSequenceMatchBeginPositionD0VWR8120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1133) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383121, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383121) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383121, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383121) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), '')))), '[^-]', ''))) AS ?step2134) .
BIND(((?step2134 + ?targetMotifMatchRegionMatchBeginPositionMF_01383122) - 1) AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t135) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER ((BOUND(?thisPositionOn26) && BOUND(?thisPositionOn27))) .
BIND(URI(CONCAT(STR(?this), '#MF_01383a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch140 faldo:location ?templateMotifSequenceMatchRegionD0VWR8141 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0VWR8143 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD0VWR8MF_01383136 .
?templateMotifSequenceMatchRegionD0VWR8141 faldo:begin ?templateMotifSequenceMatchBeginD0VWR8142 .
?templateMotifSequenceMatchBeginD0VWR8142 faldo:position ?templateMotifSequenceMatchBeginPositionD0VWR8137 ;
faldo:reference isoform:D0VWR8-1 .
?templateMotifSequenceProfileAlignmentOperationD0VWR8143 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
?targetMotifMatch144 faldo:location ?targetMotifMatchRegionMatch145 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01383147 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD0VWR8MF_01383138 .
?targetMotifMatchRegionMatch145 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01383146 .
?targetMotifMatchRegionMatchBeginMF_01383146 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01383139 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01383147 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR8MF_01383136, 1, (STRLEN(?templateMotifCigarD0VWR8MF_01383136) - STRLEN(REPLACE(?templateMotifCigarD0VWR8MF_01383136, CONCAT('^(?:-*[^-]){', STR(((142 - ?templateMotifSequenceMatchBeginPositionD0VWR8137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383138, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383138) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383138, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383138) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), '')))), '[^-]', ''))) AS ?step2149) .
BIND(((?step2149 + ?targetMotifMatchRegionMatchBeginPositionMF_01383139) - 1) AS ?thisPositionOn32) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR8MF_01383136, 1, (STRLEN(?templateMotifCigarD0VWR8MF_01383136) - STRLEN(REPLACE(?templateMotifCigarD0VWR8MF_01383136, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionD0VWR8137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383138, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383138) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383138, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383138) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_01383139) - 1) AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) .
FILTER ((BOUND(?thisPositionOn32) && BOUND(?thisPositionOn33))) .
BIND(URI(CONCAT(STR(?this), '#MF_01383a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionD0VWR8158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0VWR8160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD0VWR8MF_01383153 .
?templateMotifSequenceMatchRegionD0VWR8158 faldo:begin ?templateMotifSequenceMatchBeginD0VWR8159 .
?templateMotifSequenceMatchBeginD0VWR8159 faldo:position ?templateMotifSequenceMatchBeginPositionD0VWR8154 ;
faldo:reference isoform:D0VWR8-1 .
?templateMotifSequenceProfileAlignmentOperationD0VWR8160 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01383164 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD0VWR8MF_01383155 .
?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01383163 .
?targetMotifMatchRegionMatchBeginMF_01383163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01383156 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01383164 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR8MF_01383153, 1, (STRLEN(?templateMotifCigarD0VWR8MF_01383153) - STRLEN(REPLACE(?templateMotifCigarD0VWR8MF_01383153, CONCAT('^(?:-*[^-]){', STR(((197 - ?templateMotifSequenceMatchBeginPositionD0VWR8154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383155, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383155) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383155, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383155) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_01383156) - 1) AS ?thisPositionOn38) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR8MF_01383153, 1, (STRLEN(?templateMotifCigarD0VWR8MF_01383153) - STRLEN(REPLACE(?templateMotifCigarD0VWR8MF_01383153, CONCAT('^(?:-*[^-]){', STR(((217 - ?templateMotifSequenceMatchBeginPositionD0VWR8154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383155, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383155) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383155, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383155) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) .
BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_01383156) - 1) AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t169) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) .
FILTER ((BOUND(?thisPositionOn38) && BOUND(?thisPositionOn39))) .
BIND(URI(CONCAT(STR(?this), '#MF_01383a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch174 faldo:location ?templateMotifSequenceMatchRegionD0VWR8175 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0VWR8177 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD0VWR8MF_01383170 .
?templateMotifSequenceMatchRegionD0VWR8175 faldo:begin ?templateMotifSequenceMatchBeginD0VWR8176 .
?templateMotifSequenceMatchBeginD0VWR8176 faldo:position ?templateMotifSequenceMatchBeginPositionD0VWR8171 ;
faldo:reference isoform:D0VWR8-1 .
?templateMotifSequenceProfileAlignmentOperationD0VWR8177 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
?targetMotifMatch178 faldo:location ?targetMotifMatchRegionMatch179 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01383181 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD0VWR8MF_01383172 .
?targetMotifMatchRegionMatch179 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01383180 .
?targetMotifMatchRegionMatchBeginMF_01383180 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01383173 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01383181 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR8MF_01383170, 1, (STRLEN(?templateMotifCigarD0VWR8MF_01383170) - STRLEN(REPLACE(?templateMotifCigarD0VWR8MF_01383170, CONCAT('^(?:-*[^-]){', STR(((268 - ?templateMotifSequenceMatchBeginPositionD0VWR8171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383172, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383172) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383172, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383172) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) .
BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_01383173) - 1) AS ?thisPositionOn44) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR8MF_01383170, 1, (STRLEN(?templateMotifCigarD0VWR8MF_01383170) - STRLEN(REPLACE(?templateMotifCigarD0VWR8MF_01383170, CONCAT('^(?:-*[^-]){', STR(((284 - ?templateMotifSequenceMatchBeginPositionD0VWR8171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383172, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383172) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383172, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383172) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), '')))), '[^-]', ''))) AS ?step2185) .
BIND(((?step2185 + ?targetMotifMatchRegionMatchBeginPositionMF_01383173) - 1) AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t186) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse43) .
FILTER ((BOUND(?thisPositionOn44) && BOUND(?thisPositionOn45))) .
BIND(URI(CONCAT(STR(?this), '#MF_01383a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch191 faldo:location ?templateMotifSequenceMatchRegionD0VWR8192 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0VWR8194 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD0VWR8MF_01383187 .
?templateMotifSequenceMatchRegionD0VWR8192 faldo:begin ?templateMotifSequenceMatchBeginD0VWR8193 .
?templateMotifSequenceMatchBeginD0VWR8193 faldo:position ?templateMotifSequenceMatchBeginPositionD0VWR8188 ;
faldo:reference isoform:D0VWR8-1 .
?templateMotifSequenceProfileAlignmentOperationD0VWR8194 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
?targetMotifMatch195 faldo:location ?targetMotifMatchRegionMatch196 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01383198 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD0VWR8MF_01383189 .
?targetMotifMatchRegionMatch196 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01383197 .
?targetMotifMatchRegionMatchBeginMF_01383197 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01383190 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01383198 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR8MF_01383187, 1, (STRLEN(?templateMotifCigarD0VWR8MF_01383187) - STRLEN(REPLACE(?templateMotifCigarD0VWR8MF_01383187, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionD0VWR8188) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383189, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383189) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383189, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383189) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), '')))), '[^-]', ''))) AS ?step2200) .
BIND(((?step2200 + ?targetMotifMatchRegionMatchBeginPositionMF_01383190) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t201) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01383a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch206 faldo:location ?templateMotifSequenceMatchRegionD0VWR8207 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0VWR8209 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD0VWR8MF_01383202 .
?templateMotifSequenceMatchRegionD0VWR8207 faldo:begin ?templateMotifSequenceMatchBeginD0VWR8208 .
?templateMotifSequenceMatchBeginD0VWR8208 faldo:position ?templateMotifSequenceMatchBeginPositionD0VWR8203 ;
faldo:reference isoform:D0VWR8-1 .
?templateMotifSequenceProfileAlignmentOperationD0VWR8209 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
?targetMotifMatch210 faldo:location ?targetMotifMatchRegionMatch211 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01383213 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD0VWR8MF_01383204 .
?targetMotifMatchRegionMatch211 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01383212 .
?targetMotifMatchRegionMatchBeginMF_01383212 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01383205 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01383213 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR8MF_01383202, 1, (STRLEN(?templateMotifCigarD0VWR8MF_01383202) - STRLEN(REPLACE(?templateMotifCigarD0VWR8MF_01383202, CONCAT('^(?:-*[^-]){', STR(((187 - ?templateMotifSequenceMatchBeginPositionD0VWR8203) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1214) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383204, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383204) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383204, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383204) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), '')))), '[^-]', ''))) AS ?step2215) .
BIND(((?step2215 + ?targetMotifMatchRegionMatchBeginPositionMF_01383205) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t216) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01383a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch221 faldo:location ?templateMotifSequenceMatchRegionD0VWR8222 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0VWR8224 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD0VWR8MF_01383217 .
?templateMotifSequenceMatchRegionD0VWR8222 faldo:begin ?templateMotifSequenceMatchBeginD0VWR8223 .
?templateMotifSequenceMatchBeginD0VWR8223 faldo:position ?templateMotifSequenceMatchBeginPositionD0VWR8218 ;
faldo:reference isoform:D0VWR8-1 .
?templateMotifSequenceProfileAlignmentOperationD0VWR8224 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
?targetMotifMatch225 faldo:location ?targetMotifMatchRegionMatch226 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01383228 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD0VWR8MF_01383219 .
?targetMotifMatchRegionMatch226 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01383227 .
?targetMotifMatchRegionMatchBeginMF_01383227 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01383220 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01383228 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR8MF_01383217, 1, (STRLEN(?templateMotifCigarD0VWR8MF_01383217) - STRLEN(REPLACE(?templateMotifCigarD0VWR8MF_01383217, CONCAT('^(?:-*[^-]){', STR(((204 - ?templateMotifSequenceMatchBeginPositionD0VWR8218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1229) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383219, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383219) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383219, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383219) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), '')))), '[^-]', ''))) AS ?step2230) .
BIND(((?step2230 + ?targetMotifMatchRegionMatchBeginPositionMF_01383220) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs1t231) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01383a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch236 faldo:location ?templateMotifSequenceMatchRegionD0VWR8237 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0VWR8239 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD0VWR8MF_01383232 .
?templateMotifSequenceMatchRegionD0VWR8237 faldo:begin ?templateMotifSequenceMatchBeginD0VWR8238 .
?templateMotifSequenceMatchBeginD0VWR8238 faldo:position ?templateMotifSequenceMatchBeginPositionD0VWR8233 ;
faldo:reference isoform:D0VWR8-1 .
?templateMotifSequenceProfileAlignmentOperationD0VWR8239 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
?targetMotifMatch240 faldo:location ?targetMotifMatchRegionMatch241 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01383243 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD0VWR8MF_01383234 .
?targetMotifMatchRegionMatch241 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01383242 .
?targetMotifMatchRegionMatchBeginMF_01383242 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01383235 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01383243 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR8MF_01383232, 1, (STRLEN(?templateMotifCigarD0VWR8MF_01383232) - STRLEN(REPLACE(?templateMotifCigarD0VWR8MF_01383232, CONCAT('^(?:-*[^-]){', STR(((258 - ?templateMotifSequenceMatchBeginPositionD0VWR8233) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1244) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383234, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383234) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1244), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383234, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383234) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1244), '}'), '')))), '[^-]', ''))) AS ?step2245) .
BIND(((?step2245 + ?targetMotifMatchRegionMatchBeginPositionMF_01383235) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs1t246) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse70) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01383a68')) AS ?annotation68) .
BIND(?this AS ?pfs67) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch251 faldo:location ?templateMotifSequenceMatchRegionD0VWR8252 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0VWR8254 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD0VWR8MF_01383247 .
?templateMotifSequenceMatchRegionD0VWR8252 faldo:begin ?templateMotifSequenceMatchBeginD0VWR8253 .
?templateMotifSequenceMatchBeginD0VWR8253 faldo:position ?templateMotifSequenceMatchBeginPositionD0VWR8248 ;
faldo:reference isoform:D0VWR8-1 .
?templateMotifSequenceProfileAlignmentOperationD0VWR8254 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
?targetMotifMatch255 faldo:location ?targetMotifMatchRegionMatch256 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01383258 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD0VWR8MF_01383249 .
?targetMotifMatchRegionMatch256 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01383257 .
?targetMotifMatchRegionMatchBeginMF_01383257 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01383250 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01383258 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR8MF_01383247, 1, (STRLEN(?templateMotifCigarD0VWR8MF_01383247) - STRLEN(REPLACE(?templateMotifCigarD0VWR8MF_01383247, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionD0VWR8248) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1259) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383249, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383249) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383249, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1259), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383249, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383249) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383249, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1259), '}'), '')))), '[^-]', ''))) AS ?step2260) .
BIND(((?step2260 + ?targetMotifMatchRegionMatchBeginPositionMF_01383250) - 1) AS ?thisPositionOn79) .
BIND(?thisPositionOn79 AS ?thisPositionOn80) .
BIND(?this AS ?pfs1t261) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse77) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_01383a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch266 faldo:location ?templateMotifSequenceMatchRegionD0VWR8267 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0VWR8269 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD0VWR8MF_01383262 .
?templateMotifSequenceMatchRegionD0VWR8267 faldo:begin ?templateMotifSequenceMatchBeginD0VWR8268 .
?templateMotifSequenceMatchBeginD0VWR8268 faldo:position ?templateMotifSequenceMatchBeginPositionD0VWR8263 ;
faldo:reference isoform:D0VWR8-1 .
?templateMotifSequenceProfileAlignmentOperationD0VWR8269 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
?targetMotifMatch270 faldo:location ?targetMotifMatchRegionMatch271 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01383273 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD0VWR8MF_01383264 .
?targetMotifMatchRegionMatch271 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01383272 .
?targetMotifMatchRegionMatchBeginMF_01383272 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01383265 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01383273 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR8MF_01383262, 1, (STRLEN(?templateMotifCigarD0VWR8MF_01383262) - STRLEN(REPLACE(?templateMotifCigarD0VWR8MF_01383262, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionD0VWR8263) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1274) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383264, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383264) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1274), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383264, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383264) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1274), '}'), '')))), '[^-]', ''))) AS ?step2275) .
BIND(((?step2275 + ?targetMotifMatchRegionMatchBeginPositionMF_01383265) - 1) AS ?thisPositionOn86) .
BIND(?thisPositionOn86 AS ?thisPositionOn87) .
BIND(?this AS ?pfs1t276) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse84) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01383a82')) AS ?annotation82) .
BIND(?this AS ?pfs81) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch281 faldo:location ?templateMotifSequenceMatchRegionD0VWR8282 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0VWR8284 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD0VWR8MF_01383277 .
?templateMotifSequenceMatchRegionD0VWR8282 faldo:begin ?templateMotifSequenceMatchBeginD0VWR8283 .
?templateMotifSequenceMatchBeginD0VWR8283 faldo:position ?templateMotifSequenceMatchBeginPositionD0VWR8278 ;
faldo:reference isoform:D0VWR8-1 .
?templateMotifSequenceProfileAlignmentOperationD0VWR8284 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
?targetMotifMatch285 faldo:location ?targetMotifMatchRegionMatch286 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01383288 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD0VWR8MF_01383279 .
?targetMotifMatchRegionMatch286 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01383287 .
?targetMotifMatchRegionMatchBeginMF_01383287 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01383280 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01383288 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR8MF_01383277, 1, (STRLEN(?templateMotifCigarD0VWR8MF_01383277) - STRLEN(REPLACE(?templateMotifCigarD0VWR8MF_01383277, CONCAT('^(?:-*[^-]){', STR(((204 - ?templateMotifSequenceMatchBeginPositionD0VWR8278) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1289) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383279, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383279) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383279, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1289), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383279, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383279) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383279, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1289), '}'), '')))), '[^-]', ''))) AS ?step2290) .
BIND(((?step2290 + ?targetMotifMatchRegionMatchBeginPositionMF_01383280) - 1) AS ?thisPositionOn93) .
BIND(?thisPositionOn93 AS ?thisPositionOn94) .
BIND(?this AS ?pfs1t291) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfsb90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfse91) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn93, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01383a89')) AS ?annotation89) .
BIND(?this AS ?pfs88) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch296 faldo:location ?templateMotifSequenceMatchRegionD0VWR8297 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0VWR8299 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD0VWR8MF_01383292 .
?templateMotifSequenceMatchRegionD0VWR8297 faldo:begin ?templateMotifSequenceMatchBeginD0VWR8298 .
?templateMotifSequenceMatchBeginD0VWR8298 faldo:position ?templateMotifSequenceMatchBeginPositionD0VWR8293 ;
faldo:reference isoform:D0VWR8-1 .
?templateMotifSequenceProfileAlignmentOperationD0VWR8299 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
?targetMotifMatch300 faldo:location ?targetMotifMatchRegionMatch301 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01383303 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD0VWR8MF_01383294 .
?targetMotifMatchRegionMatch301 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01383302 .
?targetMotifMatchRegionMatchBeginMF_01383302 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01383295 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01383303 edam:has_input signature:MF_01383 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0VWR8MF_01383292, 1, (STRLEN(?templateMotifCigarD0VWR8MF_01383292) - STRLEN(REPLACE(?templateMotifCigarD0VWR8MF_01383292, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionD0VWR8293) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1304) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383294, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383294) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1304), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0VWR8MF_01383294, 1, (STRLEN(?targetMotifMatchCigarD0VWR8MF_01383294) - STRLEN(REPLACE(?targetMotifMatchCigarD0VWR8MF_01383294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1304), '}'), '')))), '[^-]', ''))) AS ?step2305) .
BIND(((?step2305 + ?targetMotifMatchRegionMatchBeginPositionMF_01383295) - 1) AS ?thisPositionOn100) .
BIND(?thisPositionOn100 AS ?thisPositionOn101) .
BIND(?this AS ?pfs1t306) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfsb97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfse98) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn100, 1) = 'F')) .
BIND(URI(CONCAT(STR(?this), '#MF_01383a96')) AS ?annotation96) .
BIND(?this AS ?pfs95) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33071 .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33071 .
})) .
BIND(?this AS ?case12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1117 .
})) .
BIND(?this AS ?case13) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33071 .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
})) .
BIND(?this AS ?case14) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33071 .
})) .
BIND(?this AS ?case15) .
}
}
"xsd:string |
