| http://purl.uniprot.org/unirules/MF_01642#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:598191 up:source unirule:MF_01642 .
_:598192 up:source unirule:MF_01642 .
_:598193 up:source unirule:MF_01642 .
_:598194 up:source unirule:MF_01642 .
_:598195 up:source unirule:MF_01642 .
_:598196 up:source unirule:MF_01642 .
_:598197 up:source unirule:MF_01642 .
_:598198 up:source unirule:MF_01642 .
_:598199 up:source unirule:MF_01642 .
_:598200 up:source unirule:MF_01642 .
_:598201 up:source unirule:MF_01642 .
_:598202 up:source unirule:MF_01642 .
_:598203 up:source unirule:MF_01642 .
_:598204 up:source unirule:MF_01642 .
_:598205 up:source unirule:MF_01642 .
_:598206 up:source unirule:MF_01642 .
_:598207 up:source unirule:MF_01642 .
_:598208 up:source unirule:MF_01642 .
_:598209 up:source unirule:MF_01642 .
_:598210 up:source unirule:MF_01642 .
_:598211 up:source unirule:MF_01642 .
_:598212 up:source unirule:MF_01642 .
_:598213 up:source unirule:MF_01642 .
_:598214 up:source unirule:MF_01642 .
_:598215 up:source unirule:MF_01642 .
_:598216 up:source unirule:MF_01642 .
_:598217 up:source unirule:MF_01642 .
_:598218 up:source unirule:MF_01642 .
_:598219 up:source unirule:MF_01642 .
_:598220 up:source unirule:MF_01642 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0010285 ,
GO:0030170 ,
GO:0033362 ,
keyword:32 ,
keyword:663 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.6.1.83' ;
up:fullName 'LL-diaminopimelate aminotransferase' ;
up:shortName 'DAP-AT' ,
'DAP-aminotransferase' ,
'LL-DAP-aminotransferase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'dapL' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:597326 ;
rdf:type up:Cofactor_Annotation .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; LL-2,6-diaminopimelate from (S)-tetrahydrodipicolinate (aminotransferase route): step 1/1.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. LL-diaminopimelate aminotransferase subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:597326 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:597326 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf ?molecule28 .
?molecule28 rdfs:label 'substrate' .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf ?molecule36 .
?molecule36 rdfs:label 'substrate' .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:597326 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf ?molecule51 .
?molecule51 rdfs:label 'substrate' .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:597326 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf ?molecule66 .
?molecule66 rdfs:label 'substrate' .
?pfs69 up:annotation ?annotation70 .
?annotation70 faldo:begin ?pfsb71 ;
faldo:end ?pfse72 ;
up:ligand ?ligand73 ;
rdf:type up:Binding_Site_Annotation .
?pfsb71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfse72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?ligand73 rdfs:subClassOf chebi:597326 .
?pfs76 up:annotation ?annotation77 .
?annotation77 faldo:begin ?pfsb78 ;
faldo:end ?pfse79 ;
up:ligand ?ligand80 ;
rdf:type up:Binding_Site_Annotation .
?pfsb78 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfse79 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?ligand80 rdfs:subClassOf ?molecule81 .
?molecule81 rdfs:label 'substrate' .
?pfs84 up:annotation ?annotation85 .
?annotation85 faldo:begin ?pfsb86 ;
faldo:end ?pfse87 ;
up:ligand ?ligand88 ;
rdf:type up:Binding_Site_Annotation .
?pfsb86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?pfse87 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?ligand88 rdfs:subClassOf chebi:597326 .
?pfs91 up:annotation ?annotation92 .
?annotation92 faldo:begin ?pfsb93 ;
faldo:end ?pfse94 ;
up:ligand ?ligand95 ;
rdf:type up:Binding_Site_Annotation .
?pfsb93 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?pfse94 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?ligand95 rdfs:subClassOf chebi:597326 .
?pfs98 up:annotation ?annotation99 .
?annotation99 faldo:begin ?pfsb100 ;
faldo:end ?pfse101 ;
up:ligand ?ligand102 ;
rdf:type up:Binding_Site_Annotation .
?pfsb100 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfse101 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
?ligand102 rdfs:subClassOf chebi:597326 .
?pfs105 up:annotation ?annotation106 .
?annotation106 faldo:begin ?pfsb107 ;
faldo:end ?pfse108 ;
up:ligand ?ligand109 ;
rdf:type up:Binding_Site_Annotation .
?pfsb107 faldo:position ?thisPositionOn111 ;
rdf:type faldo:ExactPosition .
?pfse108 faldo:position ?thisPositionOn112 ;
rdf:type faldo:ExactPosition .
?ligand109 rdfs:subClassOf ?molecule110 .
?molecule110 rdfs:label 'substrate' .
?pfs113 up:annotation ?annotation114 .
?annotation114 faldo:begin ?pfsb115 ;
faldo:end ?pfse116 ;
up:ligand ?ligand117 ;
rdf:type up:Binding_Site_Annotation .
?pfsb115 faldo:position ?thisPositionOn119 ;
rdf:type faldo:ExactPosition .
?pfse116 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?ligand117 rdfs:subClassOf ?molecule118 .
?molecule118 rdfs:label 'substrate' .
?pfs121 up:annotation ?annotation122 .
?annotation122 faldo:begin ?pfsb123 ;
faldo:end ?pfse124 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-(pyridoxal phosphate)lysine' .
?pfsb123 faldo:position ?thisPositionOn125 ;
rdf:type faldo:ExactPosition .
?pfse124 faldo:position ?thisPositionOn126 ;
rdf:type faldo:ExactPosition .
_:598221 a rdf:Statement ;
up:attribution _:598191 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:598222 a rdf:Statement ;
up:attribution _:598192 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:598223 a rdf:Statement ;
up:attribution _:598193 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:598224 a rdf:Statement ;
up:attribution _:598194 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:598225 a rdf:Statement ;
up:attribution _:598195 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:598226 a rdf:Statement ;
up:attribution _:598196 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:598227 a rdf:Statement ;
up:attribution _:598197 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:598228 a rdf:Statement ;
up:attribution _:598198 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:598229 a rdf:Statement ;
up:attribution _:598199 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:32 .
_:598230 a rdf:Statement ;
up:attribution _:598200 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:663 .
_:598231 a rdf:Statement ;
up:attribution _:598201 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:598232 a rdf:Statement ;
up:attribution _:598202 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0010285 .
_:598233 a rdf:Statement ;
up:attribution _:598203 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030170 .
_:598234 a rdf:Statement ;
up:attribution _:598204 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0033362 .
_:598235 a rdf:Statement ;
up:source unirule:MF_01642 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:598236 a rdf:Statement ;
up:attribution _:598205 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:598237 a rdf:Statement ;
up:source unirule:MF_01642 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:598238 a rdf:Statement ;
up:attribution _:598206 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:598239 a rdf:Statement ;
up:source unirule:MF_01642 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:598240 a rdf:Statement ;
up:attribution _:598207 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:598241 a rdf:Statement ;
up:source unirule:MF_01642 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:598242 a rdf:Statement ;
up:attribution _:598208 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:598243 a rdf:Statement ;
up:source unirule:MF_01642 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:598244 a rdf:Statement ;
up:attribution _:598209 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:598245 a rdf:Statement ;
up:source unirule:MF_01642 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:598246 a rdf:Statement ;
up:attribution _:598210 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:598247 a rdf:Statement ;
up:source unirule:MF_01642 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:598248 a rdf:Statement ;
up:attribution _:598211 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:598249 a rdf:Statement ;
up:source unirule:MF_01642 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:598250 a rdf:Statement ;
up:attribution _:598212 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:598251 a rdf:Statement ;
up:source unirule:MF_01642 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:598252 a rdf:Statement ;
up:attribution _:598213 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:598253 a rdf:Statement ;
up:source unirule:MF_01642 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:598254 a rdf:Statement ;
up:attribution _:598214 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:598255 a rdf:Statement ;
up:source unirule:MF_01642 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:598256 a rdf:Statement ;
up:attribution _:598215 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:598257 a rdf:Statement ;
up:source unirule:MF_01642 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:598258 a rdf:Statement ;
up:attribution _:598216 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:598259 a rdf:Statement ;
up:source unirule:MF_01642 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:598260 a rdf:Statement ;
up:attribution _:598217 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:598261 a rdf:Statement ;
up:source unirule:MF_01642 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:598262 a rdf:Statement ;
up:attribution _:598218 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:598263 a rdf:Statement ;
up:source unirule:MF_01642 ;
rdf:subject ?pfs113 ;
rdf:predicate up:annotation ;
rdf:object ?annotation114 .
_:598264 a rdf:Statement ;
up:attribution _:598219 ;
rdf:subject ?pfs113 ;
rdf:predicate up:annotation ;
rdf:object ?annotation114 .
_:598265 a rdf:Statement ;
up:source unirule:MF_01642 ;
rdf:subject ?pfs121 ;
rdf:predicate up:annotation ;
rdf:object ?annotation122 .
_:598266 a rdf:Statement ;
up:attribution _:598220 ;
rdf:subject ?pfs121 ;
rdf:predicate up:annotation ;
rdf:object ?annotation122 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01642
#Rule MF_01642 Created by:? on:2007-11-07 Modified by:Elisabeth Coudert on:2025-01-09
VALUES ?supertaxon127 {taxon:187857 taxon:976 taxon:204428 taxon:200795 taxon:1117 taxon:186801 taxon:28221 taxon:203691 taxon:2158}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01642 .
?thisOrganism rdfs:subClassOf+ ?supertaxon127 .
BIND(URI(CONCAT(STR(?this), '#MF_01642a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01642a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01642a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01642a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01642a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01642a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01642a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionO84395133 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO84395135 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO84395MF_01642128 .
?templateMotifSequenceMatchRegionO84395133 faldo:begin ?templateMotifSequenceMatchBeginO84395134 .
?templateMotifSequenceMatchBeginO84395134 faldo:position ?templateMotifSequenceMatchBeginPositionO84395129 ;
faldo:reference isoform:O84395-1 .
?templateMotifSequenceProfileAlignmentOperationO84395135 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01642139 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO84395MF_01642130 .
?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01642138 .
?targetMotifMatchRegionMatchBeginMF_01642138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01642131 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01642139 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO84395MF_01642128, 1, (STRLEN(?templateMotifCigarO84395MF_01642128) - STRLEN(REPLACE(?templateMotifCigarO84395MF_01642128, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionO84395129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO84395MF_01642130, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642130) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO84395MF_01642130, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642130) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_01642131) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO84395MF_01642128, 1, (STRLEN(?templateMotifCigarO84395MF_01642128) - STRLEN(REPLACE(?templateMotifCigarO84395MF_01642128, CONCAT('^(?:-*[^-]){', STR(((105 - ?templateMotifSequenceMatchBeginPositionO84395129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO84395MF_01642130, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642130) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO84395MF_01642130, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642130) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) .
BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_01642131) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER (REGEX('[AST]K', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01642a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch149 faldo:location ?templateMotifSequenceMatchRegionO84395150 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO84395152 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO84395MF_01642145 .
?templateMotifSequenceMatchRegionO84395150 faldo:begin ?templateMotifSequenceMatchBeginO84395151 .
?templateMotifSequenceMatchBeginO84395151 faldo:position ?templateMotifSequenceMatchBeginPositionO84395146 ;
faldo:reference isoform:O84395-1 .
?templateMotifSequenceProfileAlignmentOperationO84395152 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
?targetMotifMatch153 faldo:location ?targetMotifMatchRegionMatch154 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01642156 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO84395MF_01642147 .
?targetMotifMatchRegionMatch154 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01642155 .
?targetMotifMatchRegionMatchBeginMF_01642155 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01642148 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01642156 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO84395MF_01642145, 1, (STRLEN(?templateMotifCigarO84395MF_01642145) - STRLEN(REPLACE(?templateMotifCigarO84395MF_01642145, CONCAT('^(?:-*[^-]){', STR(((233 - ?templateMotifSequenceMatchBeginPositionO84395146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO84395MF_01642147, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642147) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO84395MF_01642147, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642147) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) .
BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_01642148) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO84395MF_01642145, 1, (STRLEN(?templateMotifCigarO84395MF_01642145) - STRLEN(REPLACE(?templateMotifCigarO84395MF_01642145, CONCAT('^(?:-*[^-]){', STR(((235 - ?templateMotifSequenceMatchBeginPositionO84395146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO84395MF_01642147, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642147) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO84395MF_01642147, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642147) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) .
BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_01642148) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t161) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER (REGEX('S[ARNDCQEGHILKMFPSTWYVBZJUOX]S', SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01642a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch166 faldo:location ?templateMotifSequenceMatchRegionO84395167 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO84395169 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO84395MF_01642162 .
?templateMotifSequenceMatchRegionO84395167 faldo:begin ?templateMotifSequenceMatchBeginO84395168 .
?templateMotifSequenceMatchBeginO84395168 faldo:position ?templateMotifSequenceMatchBeginPositionO84395163 ;
faldo:reference isoform:O84395-1 .
?templateMotifSequenceProfileAlignmentOperationO84395169 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
?targetMotifMatch170 faldo:location ?targetMotifMatchRegionMatch171 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01642173 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO84395MF_01642164 .
?targetMotifMatchRegionMatch171 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01642172 .
?targetMotifMatchRegionMatchBeginMF_01642172 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01642165 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01642173 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO84395MF_01642162, 1, (STRLEN(?templateMotifCigarO84395MF_01642162) - STRLEN(REPLACE(?templateMotifCigarO84395MF_01642162, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionO84395163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO84395MF_01642164, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642164) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO84395MF_01642164, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642164) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), '')))), '[^-]', ''))) AS ?step2175) .
BIND(((?step2175 + ?targetMotifMatchRegionMatchBeginPositionMF_01642165) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t176) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01642a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch181 faldo:location ?templateMotifSequenceMatchRegionO84395182 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO84395184 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO84395MF_01642177 .
?templateMotifSequenceMatchRegionO84395182 faldo:begin ?templateMotifSequenceMatchBeginO84395183 .
?templateMotifSequenceMatchBeginO84395183 faldo:position ?templateMotifSequenceMatchBeginPositionO84395178 ;
faldo:reference isoform:O84395-1 .
?templateMotifSequenceProfileAlignmentOperationO84395184 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
?targetMotifMatch185 faldo:location ?targetMotifMatchRegionMatch186 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01642188 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO84395MF_01642179 .
?targetMotifMatchRegionMatch186 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01642187 .
?targetMotifMatchRegionMatchBeginMF_01642187 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01642180 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01642188 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO84395MF_01642177, 1, (STRLEN(?templateMotifCigarO84395MF_01642177) - STRLEN(REPLACE(?templateMotifCigarO84395MF_01642177, CONCAT('^(?:-*[^-]){', STR(((41 - ?templateMotifSequenceMatchBeginPositionO84395178) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO84395MF_01642179, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642179) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO84395MF_01642179, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642179) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), '')))), '[^-]', ''))) AS ?step2190) .
BIND(((?step2190 + ?targetMotifMatchRegionMatchBeginPositionMF_01642180) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t191) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01642a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch196 faldo:location ?templateMotifSequenceMatchRegionO84395197 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO84395199 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO84395MF_01642192 .
?templateMotifSequenceMatchRegionO84395197 faldo:begin ?templateMotifSequenceMatchBeginO84395198 .
?templateMotifSequenceMatchBeginO84395198 faldo:position ?templateMotifSequenceMatchBeginPositionO84395193 ;
faldo:reference isoform:O84395-1 .
?templateMotifSequenceProfileAlignmentOperationO84395199 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
?targetMotifMatch200 faldo:location ?targetMotifMatchRegionMatch201 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01642203 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO84395MF_01642194 .
?targetMotifMatchRegionMatch201 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01642202 .
?targetMotifMatchRegionMatchBeginMF_01642202 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01642195 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01642203 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO84395MF_01642192, 1, (STRLEN(?templateMotifCigarO84395MF_01642192) - STRLEN(REPLACE(?templateMotifCigarO84395MF_01642192, CONCAT('^(?:-*[^-]){', STR(((71 - ?templateMotifSequenceMatchBeginPositionO84395193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1204) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO84395MF_01642194, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642194) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO84395MF_01642194, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642194) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), '')))), '[^-]', ''))) AS ?step2205) .
BIND(((?step2205 + ?targetMotifMatchRegionMatchBeginPositionMF_01642195) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t206) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01642a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch211 faldo:location ?templateMotifSequenceMatchRegionO84395212 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO84395214 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO84395MF_01642207 .
?templateMotifSequenceMatchRegionO84395212 faldo:begin ?templateMotifSequenceMatchBeginO84395213 .
?templateMotifSequenceMatchBeginO84395213 faldo:position ?templateMotifSequenceMatchBeginPositionO84395208 ;
faldo:reference isoform:O84395-1 .
?templateMotifSequenceProfileAlignmentOperationO84395214 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
?targetMotifMatch215 faldo:location ?targetMotifMatchRegionMatch216 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01642218 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO84395MF_01642209 .
?targetMotifMatchRegionMatch216 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01642217 .
?targetMotifMatchRegionMatchBeginMF_01642217 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01642210 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01642218 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO84395MF_01642207, 1, (STRLEN(?templateMotifCigarO84395MF_01642207) - STRLEN(REPLACE(?templateMotifCigarO84395MF_01642207, CONCAT('^(?:-*[^-]){', STR(((105 - ?templateMotifSequenceMatchBeginPositionO84395208) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1219) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO84395MF_01642209, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642209) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO84395MF_01642209, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642209) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), '')))), '[^-]', ''))) AS ?step2220) .
BIND(((?step2220 + ?targetMotifMatchRegionMatchBeginPositionMF_01642210) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t221) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01642a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch226 faldo:location ?templateMotifSequenceMatchRegionO84395227 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO84395229 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO84395MF_01642222 .
?templateMotifSequenceMatchRegionO84395227 faldo:begin ?templateMotifSequenceMatchBeginO84395228 .
?templateMotifSequenceMatchBeginO84395228 faldo:position ?templateMotifSequenceMatchBeginPositionO84395223 ;
faldo:reference isoform:O84395-1 .
?templateMotifSequenceProfileAlignmentOperationO84395229 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
?targetMotifMatch230 faldo:location ?targetMotifMatchRegionMatch231 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01642233 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO84395MF_01642224 .
?targetMotifMatchRegionMatch231 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01642232 .
?targetMotifMatchRegionMatchBeginMF_01642232 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01642225 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01642233 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO84395MF_01642222, 1, (STRLEN(?templateMotifCigarO84395MF_01642222) - STRLEN(REPLACE(?templateMotifCigarO84395MF_01642222, CONCAT('^(?:-*[^-]){', STR(((128 - ?templateMotifSequenceMatchBeginPositionO84395223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO84395MF_01642224, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642224) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO84395MF_01642224, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642224) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) .
BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_01642225) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t236) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER (REGEX('[YF]', SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01642a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch241 faldo:location ?templateMotifSequenceMatchRegionO84395242 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO84395244 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO84395MF_01642237 .
?templateMotifSequenceMatchRegionO84395242 faldo:begin ?templateMotifSequenceMatchBeginO84395243 .
?templateMotifSequenceMatchBeginO84395243 faldo:position ?templateMotifSequenceMatchBeginPositionO84395238 ;
faldo:reference isoform:O84395-1 .
?templateMotifSequenceProfileAlignmentOperationO84395244 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
?targetMotifMatch245 faldo:location ?targetMotifMatchRegionMatch246 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01642248 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO84395MF_01642239 .
?targetMotifMatchRegionMatch246 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01642247 .
?targetMotifMatchRegionMatchBeginMF_01642247 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01642240 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01642248 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO84395MF_01642237, 1, (STRLEN(?templateMotifCigarO84395MF_01642237) - STRLEN(REPLACE(?templateMotifCigarO84395MF_01642237, CONCAT('^(?:-*[^-]){', STR(((128 - ?templateMotifSequenceMatchBeginPositionO84395238) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1249) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO84395MF_01642239, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642239) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO84395MF_01642239, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642239) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), '')))), '[^-]', ''))) AS ?step2250) .
BIND(((?step2250 + ?targetMotifMatchRegionMatchBeginPositionMF_01642240) - 1) AS ?thisPositionOn67) .
BIND(?thisPositionOn67 AS ?thisPositionOn68) .
BIND(?this AS ?pfs1t251) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse64) .
FILTER (REGEX('[YF]', SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01642a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch256 faldo:location ?templateMotifSequenceMatchRegionO84395257 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO84395259 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO84395MF_01642252 .
?templateMotifSequenceMatchRegionO84395257 faldo:begin ?templateMotifSequenceMatchBeginO84395258 .
?templateMotifSequenceMatchBeginO84395258 faldo:position ?templateMotifSequenceMatchBeginPositionO84395253 ;
faldo:reference isoform:O84395-1 .
?templateMotifSequenceProfileAlignmentOperationO84395259 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
?targetMotifMatch260 faldo:location ?targetMotifMatchRegionMatch261 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01642263 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO84395MF_01642254 .
?targetMotifMatchRegionMatch261 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01642262 .
?targetMotifMatchRegionMatchBeginMF_01642262 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01642255 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01642263 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO84395MF_01642252, 1, (STRLEN(?templateMotifCigarO84395MF_01642252) - STRLEN(REPLACE(?templateMotifCigarO84395MF_01642252, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionO84395253) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1264) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO84395MF_01642254, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642254) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO84395MF_01642254, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642254) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), '')))), '[^-]', ''))) AS ?step2265) .
BIND(((?step2265 + ?targetMotifMatchRegionMatchBeginPositionMF_01642255) - 1) AS ?thisPositionOn74) .
BIND(?thisPositionOn74 AS ?thisPositionOn75) .
BIND(?this AS ?pfs1t266) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse72) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01642a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch271 faldo:location ?templateMotifSequenceMatchRegionO84395272 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO84395274 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO84395MF_01642267 .
?templateMotifSequenceMatchRegionO84395272 faldo:begin ?templateMotifSequenceMatchBeginO84395273 .
?templateMotifSequenceMatchBeginO84395273 faldo:position ?templateMotifSequenceMatchBeginPositionO84395268 ;
faldo:reference isoform:O84395-1 .
?templateMotifSequenceProfileAlignmentOperationO84395274 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
?targetMotifMatch275 faldo:location ?targetMotifMatchRegionMatch276 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01642278 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO84395MF_01642269 .
?targetMotifMatchRegionMatch276 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01642277 .
?targetMotifMatchRegionMatchBeginMF_01642277 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01642270 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01642278 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO84395MF_01642267, 1, (STRLEN(?templateMotifCigarO84395MF_01642267) - STRLEN(REPLACE(?templateMotifCigarO84395MF_01642267, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionO84395268) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1279) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO84395MF_01642269, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642269) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO84395MF_01642269, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642269) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), '')))), '[^-]', ''))) AS ?step2280) .
BIND(((?step2280 + ?targetMotifMatchRegionMatchBeginPositionMF_01642270) - 1) AS ?thisPositionOn82) .
BIND(?thisPositionOn82 AS ?thisPositionOn83) .
BIND(?this AS ?pfs1t281) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse79) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01642a77')) AS ?annotation77) .
BIND(?this AS ?pfs76) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch286 faldo:location ?templateMotifSequenceMatchRegionO84395287 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO84395289 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO84395MF_01642282 .
?templateMotifSequenceMatchRegionO84395287 faldo:begin ?templateMotifSequenceMatchBeginO84395288 .
?templateMotifSequenceMatchBeginO84395288 faldo:position ?templateMotifSequenceMatchBeginPositionO84395283 ;
faldo:reference isoform:O84395-1 .
?templateMotifSequenceProfileAlignmentOperationO84395289 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
?targetMotifMatch290 faldo:location ?targetMotifMatchRegionMatch291 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01642293 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO84395MF_01642284 .
?targetMotifMatchRegionMatch291 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01642292 .
?targetMotifMatchRegionMatchBeginMF_01642292 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01642285 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01642293 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO84395MF_01642282, 1, (STRLEN(?templateMotifCigarO84395MF_01642282) - STRLEN(REPLACE(?templateMotifCigarO84395MF_01642282, CONCAT('^(?:-*[^-]){', STR(((205 - ?templateMotifSequenceMatchBeginPositionO84395283) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1294) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO84395MF_01642284, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642284) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO84395MF_01642284, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642284) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), '')))), '[^-]', ''))) AS ?step2295) .
BIND(((?step2295 + ?targetMotifMatchRegionMatchBeginPositionMF_01642285) - 1) AS ?thisPositionOn89) .
BIND(?thisPositionOn89 AS ?thisPositionOn90) .
BIND(?this AS ?pfs1t296) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse87) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn89, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01642a85')) AS ?annotation85) .
BIND(?this AS ?pfs84) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch301 faldo:location ?templateMotifSequenceMatchRegionO84395302 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO84395304 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO84395MF_01642297 .
?templateMotifSequenceMatchRegionO84395302 faldo:begin ?templateMotifSequenceMatchBeginO84395303 .
?templateMotifSequenceMatchBeginO84395303 faldo:position ?templateMotifSequenceMatchBeginPositionO84395298 ;
faldo:reference isoform:O84395-1 .
?templateMotifSequenceProfileAlignmentOperationO84395304 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
?targetMotifMatch305 faldo:location ?targetMotifMatchRegionMatch306 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01642308 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO84395MF_01642299 .
?targetMotifMatchRegionMatch306 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01642307 .
?targetMotifMatchRegionMatchBeginMF_01642307 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01642300 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01642308 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO84395MF_01642297, 1, (STRLEN(?templateMotifCigarO84395MF_01642297) - STRLEN(REPLACE(?templateMotifCigarO84395MF_01642297, CONCAT('^(?:-*[^-]){', STR(((244 - ?templateMotifSequenceMatchBeginPositionO84395298) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1309) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO84395MF_01642299, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642299) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO84395MF_01642299, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642299) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), '')))), '[^-]', ''))) AS ?step2310) .
BIND(((?step2310 + ?targetMotifMatchRegionMatchBeginPositionMF_01642300) - 1) AS ?thisPositionOn96) .
BIND(?thisPositionOn96 AS ?thisPositionOn97) .
BIND(?this AS ?pfs1t311) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse94) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn96, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01642a92')) AS ?annotation92) .
BIND(?this AS ?pfs91) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch316 faldo:location ?templateMotifSequenceMatchRegionO84395317 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO84395319 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO84395MF_01642312 .
?templateMotifSequenceMatchRegionO84395317 faldo:begin ?templateMotifSequenceMatchBeginO84395318 .
?templateMotifSequenceMatchBeginO84395318 faldo:position ?templateMotifSequenceMatchBeginPositionO84395313 ;
faldo:reference isoform:O84395-1 .
?templateMotifSequenceProfileAlignmentOperationO84395319 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
?targetMotifMatch320 faldo:location ?targetMotifMatchRegionMatch321 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01642323 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO84395MF_01642314 .
?targetMotifMatchRegionMatch321 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01642322 .
?targetMotifMatchRegionMatchBeginMF_01642322 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01642315 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01642323 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO84395MF_01642312, 1, (STRLEN(?templateMotifCigarO84395MF_01642312) - STRLEN(REPLACE(?templateMotifCigarO84395MF_01642312, CONCAT('^(?:-*[^-]){', STR(((275 - ?templateMotifSequenceMatchBeginPositionO84395313) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1324) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO84395MF_01642314, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642314) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO84395MF_01642314, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642314) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), '')))), '[^-]', ''))) AS ?step2325) .
BIND(((?step2325 + ?targetMotifMatchRegionMatchBeginPositionMF_01642315) - 1) AS ?thisPositionOn103) .
BIND(?thisPositionOn103 AS ?thisPositionOn104) .
BIND(?this AS ?pfs1t326) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse101) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn103, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01642a99')) AS ?annotation99) .
BIND(?this AS ?pfs98) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch331 faldo:location ?templateMotifSequenceMatchRegionO84395332 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO84395334 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO84395MF_01642327 .
?templateMotifSequenceMatchRegionO84395332 faldo:begin ?templateMotifSequenceMatchBeginO84395333 .
?templateMotifSequenceMatchBeginO84395333 faldo:position ?templateMotifSequenceMatchBeginPositionO84395328 ;
faldo:reference isoform:O84395-1 .
?templateMotifSequenceProfileAlignmentOperationO84395334 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
?targetMotifMatch335 faldo:location ?targetMotifMatchRegionMatch336 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01642338 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO84395MF_01642329 .
?targetMotifMatchRegionMatch336 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01642337 .
?targetMotifMatchRegionMatchBeginMF_01642337 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01642330 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01642338 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO84395MF_01642327, 1, (STRLEN(?templateMotifCigarO84395MF_01642327) - STRLEN(REPLACE(?templateMotifCigarO84395MF_01642327, CONCAT('^(?:-*[^-]){', STR(((275 - ?templateMotifSequenceMatchBeginPositionO84395328) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1339) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO84395MF_01642329, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642329) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO84395MF_01642329, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642329) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), '')))), '[^-]', ''))) AS ?step2340) .
BIND(((?step2340 + ?targetMotifMatchRegionMatchBeginPositionMF_01642330) - 1) AS ?thisPositionOn111) .
BIND(?thisPositionOn111 AS ?thisPositionOn112) .
BIND(?this AS ?pfs1t341) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfsb107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfse108) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn111, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01642a106')) AS ?annotation106) .
BIND(?this AS ?pfs105) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch346 faldo:location ?templateMotifSequenceMatchRegionO84395347 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO84395349 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO84395MF_01642342 .
?templateMotifSequenceMatchRegionO84395347 faldo:begin ?templateMotifSequenceMatchBeginO84395348 .
?templateMotifSequenceMatchBeginO84395348 faldo:position ?templateMotifSequenceMatchBeginPositionO84395343 ;
faldo:reference isoform:O84395-1 .
?templateMotifSequenceProfileAlignmentOperationO84395349 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
?targetMotifMatch350 faldo:location ?targetMotifMatchRegionMatch351 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01642353 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO84395MF_01642344 .
?targetMotifMatchRegionMatch351 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01642352 .
?targetMotifMatchRegionMatchBeginMF_01642352 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01642345 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01642353 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO84395MF_01642342, 1, (STRLEN(?templateMotifCigarO84395MF_01642342) - STRLEN(REPLACE(?templateMotifCigarO84395MF_01642342, CONCAT('^(?:-*[^-]){', STR(((369 - ?templateMotifSequenceMatchBeginPositionO84395343) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1354) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO84395MF_01642344, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642344) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1354), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO84395MF_01642344, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642344) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1354), '}'), '')))), '[^-]', ''))) AS ?step2355) .
BIND(((?step2355 + ?targetMotifMatchRegionMatchBeginPositionMF_01642345) - 1) AS ?thisPositionOn119) .
BIND(?thisPositionOn119 AS ?thisPositionOn120) .
BIND(?this AS ?pfs1t356) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn119))) AS ?pfsb115) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfse116) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn119, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01642a114')) AS ?annotation114) .
BIND(?this AS ?pfs113) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch361 faldo:location ?templateMotifSequenceMatchRegionO84395362 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO84395364 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO84395MF_01642357 .
?templateMotifSequenceMatchRegionO84395362 faldo:begin ?templateMotifSequenceMatchBeginO84395363 .
?templateMotifSequenceMatchBeginO84395363 faldo:position ?templateMotifSequenceMatchBeginPositionO84395358 ;
faldo:reference isoform:O84395-1 .
?templateMotifSequenceProfileAlignmentOperationO84395364 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
?targetMotifMatch365 faldo:location ?targetMotifMatchRegionMatch366 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01642368 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO84395MF_01642359 .
?targetMotifMatchRegionMatch366 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01642367 .
?targetMotifMatchRegionMatchBeginMF_01642367 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01642360 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01642368 edam:has_input signature:MF_01642 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO84395MF_01642357, 1, (STRLEN(?templateMotifCigarO84395MF_01642357) - STRLEN(REPLACE(?templateMotifCigarO84395MF_01642357, CONCAT('^(?:-*[^-]){', STR(((236 - ?templateMotifSequenceMatchBeginPositionO84395358) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1369) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO84395MF_01642359, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642359) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1369), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO84395MF_01642359, 1, (STRLEN(?targetMotifMatchCigarO84395MF_01642359) - STRLEN(REPLACE(?targetMotifMatchCigarO84395MF_01642359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1369), '}'), '')))), '[^-]', ''))) AS ?step2370) .
BIND(((?step2370 + ?targetMotifMatchRegionMatchBeginPositionMF_01642360) - 1) AS ?thisPositionOn125) .
BIND(?thisPositionOn125 AS ?thisPositionOn126) .
BIND(?this AS ?pfs1t371) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn125))) AS ?pfsb123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn126))) AS ?pfse124) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn125, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01642a122')) AS ?annotation122) .
BIND(?this AS ?pfs121) .
}
}
"xsd:string |
