| http://purl.uniprot.org/unirules/MF_01687#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:616630 up:source unirule:MF_01687 .
_:616631 up:source unirule:MF_01687 .
_:616632 up:source unirule:MF_01687 .
_:616633 up:source unirule:MF_01687 .
_:616634 up:source unirule:MF_01687 .
_:616635 up:source unirule:MF_01687 .
_:616636 up:source unirule:MF_01687 .
_:616637 up:source unirule:MF_01687 .
_:616638 up:source unirule:MF_01687 .
_:616639 up:source unirule:MF_01687 .
_:616640 up:source unirule:MF_01687 .
_:616641 up:source unirule:MF_01687 .
_:616642 up:source unirule:MF_01687 .
_:616643 up:source unirule:MF_01687 .
_:616644 up:source unirule:MF_01687 .
_:616645 up:source unirule:MF_01687 .
_:616646 up:source unirule:MF_01687 .
_:616647 up:source unirule:MF_01687 .
_:616648 up:source unirule:MF_01687 .
_:616649 up:source unirule:MF_01687 .
_:616650 up:source unirule:MF_01687 .
_:616651 up:source unirule:MF_01687 .
_:616652 up:source unirule:MF_01687 .
_:616653 up:source unirule:MF_01687 .
_:616654 up:source unirule:MF_01687 .
_:616655 up:source unirule:MF_01687 .
_:616656 up:source unirule:MF_01687 .
_:616657 up:source unirule:MF_01687 .
_:616658 up:source unirule:MF_01687 .
_:616659 up:source unirule:MF_01687 .
_:616660 up:source unirule:MF_01687 .
_:616661 up:source unirule:MF_01687 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0000287 ,
GO:0016798 ,
keyword:326 ,
keyword:378 ,
keyword:460 ,
keyword:479 ,
keyword:915 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.2.1.23' ;
up:fullName 'Beta-galactosidase' ;
up:shortName 'Beta-gal' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Lactase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'lacZ' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:enzymeClass .
?annotation5 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 magnesium ions per monomer.' .
?annotation6 up:cofactor chebi:29101 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 sodium ion per monomer.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the glycosyl hydrolase 2 family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf ?molecule14 .
?molecule14 rdfs:label 'substrate' .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:29101 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:18420 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:18420 .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:18420 .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf chebi:18420 .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
up:ligand ?ligand68 ;
rdf:type up:Binding_Site_Annotation .
?pfsb66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?ligand68 rdfs:subClassOf chebi:29101 .
?pfs71 up:annotation ?annotation72 .
?annotation72 faldo:begin ?pfsb73 ;
faldo:end ?pfse74 ;
up:ligand ?ligand75 ;
rdf:type up:Binding_Site_Annotation .
?pfsb73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?pfse74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?ligand75 rdfs:subClassOf chebi:29101 .
?pfs78 up:annotation ?annotation79 .
?annotation79 faldo:begin ?pfsb80 ;
faldo:end ?pfse81 ;
up:ligand ?ligand82 ;
rdf:type up:Binding_Site_Annotation .
?pfsb80 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse81 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?ligand82 rdfs:subClassOf ?molecule83 .
?molecule83 rdfs:label 'substrate' .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
up:ligand ?ligand90 ;
rdf:type up:Binding_Site_Annotation .
?pfsb88 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?ligand90 rdfs:subClassOf ?molecule91 .
?molecule91 rdfs:label 'substrate' .
?pfs94 up:annotation ?annotation95 .
?annotation95 faldo:begin ?pfsb96 ;
faldo:end ?pfse97 ;
up:ligand ?ligand98 ;
rdf:type up:Binding_Site_Annotation .
?pfsb96 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?pfse97 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?ligand98 rdfs:subClassOf ?molecule99 .
?molecule99 rdfs:label 'substrate' .
?pfs102 up:annotation ?annotation103 .
?annotation103 faldo:begin ?pfsb104 ;
faldo:end ?pfse105 ;
up:ligand ?ligand106 ;
rdf:type up:Binding_Site_Annotation .
?pfsb104 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?pfse105 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?ligand106 rdfs:subClassOf ?molecule107 .
?molecule107 rdfs:label 'substrate' .
?pfs110 up:annotation ?annotation111 .
?annotation111 faldo:begin ?pfsb112 ;
faldo:end ?pfse113 ;
up:ligand ?ligand114 ;
rdf:type up:Binding_Site_Annotation .
?pfsb112 faldo:position ?thisPositionOn116 ;
rdf:type faldo:ExactPosition .
?pfse113 faldo:position ?thisPositionOn117 ;
rdf:type faldo:ExactPosition .
?ligand114 rdfs:subClassOf ?molecule115 .
?molecule115 rdfs:label 'substrate' .
?pfs118 up:annotation ?annotation119 .
?annotation119 faldo:begin ?pfsb120 ;
faldo:end ?pfse121 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb120 faldo:position ?thisPositionOn122 ;
rdf:type faldo:ExactPosition .
?pfse121 faldo:position ?thisPositionOn123 ;
rdf:type faldo:ExactPosition .
?pfs124 up:annotation ?annotation125 .
?annotation125 faldo:begin ?pfsb126 ;
faldo:end ?pfse127 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb126 faldo:position ?thisPositionOn128 ;
rdf:type faldo:ExactPosition .
?pfse127 faldo:position ?thisPositionOn129 ;
rdf:type faldo:ExactPosition .
_:616662 a rdf:Statement ;
up:attribution _:616630 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:616663 a rdf:Statement ;
up:attribution _:616631 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:616664 a rdf:Statement ;
up:attribution _:616632 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:616665 a rdf:Statement ;
up:attribution _:616633 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:616666 a rdf:Statement ;
up:attribution _:616634 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:616667 a rdf:Statement ;
up:attribution _:616635 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:616668 a rdf:Statement ;
up:attribution _:616636 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:616669 a rdf:Statement ;
up:attribution _:616637 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:616670 a rdf:Statement ;
up:attribution _:616638 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:326 .
_:616671 a rdf:Statement ;
up:attribution _:616639 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:616672 a rdf:Statement ;
up:attribution _:616640 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:616673 a rdf:Statement ;
up:attribution _:616641 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:616674 a rdf:Statement ;
up:attribution _:616642 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:915 .
_:616675 a rdf:Statement ;
up:attribution _:616643 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:616676 a rdf:Statement ;
up:attribution _:616644 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016798 .
_:616677 a rdf:Statement ;
up:source unirule:MF_01687 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:616678 a rdf:Statement ;
up:attribution _:616645 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:616679 a rdf:Statement ;
up:source unirule:MF_01687 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:616680 a rdf:Statement ;
up:attribution _:616646 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:616681 a rdf:Statement ;
up:source unirule:MF_01687 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:616682 a rdf:Statement ;
up:attribution _:616647 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:616683 a rdf:Statement ;
up:source unirule:MF_01687 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:616684 a rdf:Statement ;
up:attribution _:616648 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:616685 a rdf:Statement ;
up:source unirule:MF_01687 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:616686 a rdf:Statement ;
up:attribution _:616649 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:616687 a rdf:Statement ;
up:source unirule:MF_01687 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:616688 a rdf:Statement ;
up:attribution _:616650 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:616689 a rdf:Statement ;
up:source unirule:MF_01687 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:616690 a rdf:Statement ;
up:attribution _:616651 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:616691 a rdf:Statement ;
up:source unirule:MF_01687 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:616692 a rdf:Statement ;
up:attribution _:616652 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:616693 a rdf:Statement ;
up:source unirule:MF_01687 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:616694 a rdf:Statement ;
up:attribution _:616653 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:616695 a rdf:Statement ;
up:source unirule:MF_01687 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:616696 a rdf:Statement ;
up:attribution _:616654 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:616697 a rdf:Statement ;
up:source unirule:MF_01687 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:616698 a rdf:Statement ;
up:attribution _:616655 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:616699 a rdf:Statement ;
up:source unirule:MF_01687 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:616700 a rdf:Statement ;
up:attribution _:616656 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:616701 a rdf:Statement ;
up:source unirule:MF_01687 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:616702 a rdf:Statement ;
up:attribution _:616657 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:616703 a rdf:Statement ;
up:source unirule:MF_01687 ;
rdf:subject ?pfs102 ;
rdf:predicate up:annotation ;
rdf:object ?annotation103 .
_:616704 a rdf:Statement ;
up:attribution _:616658 ;
rdf:subject ?pfs102 ;
rdf:predicate up:annotation ;
rdf:object ?annotation103 .
_:616705 a rdf:Statement ;
up:source unirule:MF_01687 ;
rdf:subject ?pfs110 ;
rdf:predicate up:annotation ;
rdf:object ?annotation111 .
_:616706 a rdf:Statement ;
up:attribution _:616659 ;
rdf:subject ?pfs110 ;
rdf:predicate up:annotation ;
rdf:object ?annotation111 .
_:616707 a rdf:Statement ;
up:source unirule:MF_01687 ;
rdf:subject ?pfs118 ;
rdf:predicate up:annotation ;
rdf:object ?annotation119 .
_:616708 a rdf:Statement ;
up:attribution _:616660 ;
rdf:subject ?pfs118 ;
rdf:predicate up:annotation ;
rdf:object ?annotation119 .
_:616709 a rdf:Statement ;
up:source unirule:MF_01687 ;
rdf:subject ?pfs124 ;
rdf:predicate up:annotation ;
rdf:object ?annotation125 .
_:616710 a rdf:Statement ;
up:attribution _:616661 ;
rdf:subject ?pfs124 ;
rdf:predicate up:annotation ;
rdf:object ?annotation125 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01687
#Rule MF_01687 Created by:? on:2009-02-19 Modified by:Edouard de Castro on:2022-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01687 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01687a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01687a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01687a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01687a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01687a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01687a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01687a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionP00722135 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00722137 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00722MF_01687130 .
?templateMotifSequenceMatchRegionP00722135 faldo:begin ?templateMotifSequenceMatchBeginP00722136 .
?templateMotifSequenceMatchBeginP00722136 faldo:position ?templateMotifSequenceMatchBeginPositionP00722131 ;
faldo:reference isoform:P00722-1 .
?templateMotifSequenceProfileAlignmentOperationP00722137 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01687141 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00722MF_01687132 .
?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01687140 .
?targetMotifMatchRegionMatchBeginMF_01687140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01687133 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01687141 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00722MF_01687130, 1, (STRLEN(?templateMotifCigarP00722MF_01687130) - STRLEN(REPLACE(?templateMotifCigarP00722MF_01687130, CONCAT('^(?:-*[^-]){', STR(((538 - ?templateMotifSequenceMatchBeginPositionP00722131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00722MF_01687132, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687132) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00722MF_01687132, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687132) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) .
BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_01687133) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00722MF_01687130, 1, (STRLEN(?templateMotifCigarP00722MF_01687130) - STRLEN(REPLACE(?templateMotifCigarP00722MF_01687130, CONCAT('^(?:-*[^-]){', STR(((541 - ?templateMotifSequenceMatchBeginPositionP00722131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00722MF_01687132, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687132) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00722MF_01687132, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687132) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_01687133) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t146) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)) = 'EYAH')) .
BIND(URI(CONCAT(STR(?this), '#MF_01687a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch151 faldo:location ?templateMotifSequenceMatchRegionP00722152 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00722154 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00722MF_01687147 .
?templateMotifSequenceMatchRegionP00722152 faldo:begin ?templateMotifSequenceMatchBeginP00722153 .
?templateMotifSequenceMatchBeginP00722153 faldo:position ?templateMotifSequenceMatchBeginPositionP00722148 ;
faldo:reference isoform:P00722-1 .
?templateMotifSequenceProfileAlignmentOperationP00722154 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
?targetMotifMatch155 faldo:location ?targetMotifMatchRegionMatch156 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01687158 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00722MF_01687149 .
?targetMotifMatchRegionMatch156 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01687157 .
?targetMotifMatchRegionMatchBeginMF_01687157 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01687150 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01687158 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00722MF_01687147, 1, (STRLEN(?templateMotifCigarP00722MF_01687147) - STRLEN(REPLACE(?templateMotifCigarP00722MF_01687147, CONCAT('^(?:-*[^-]){', STR(((462 - ?templateMotifSequenceMatchBeginPositionP00722148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00722MF_01687149, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687149) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00722MF_01687149, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687149) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) .
BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_01687150) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t161) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01687a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch166 faldo:location ?templateMotifSequenceMatchRegionP00722167 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00722169 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00722MF_01687162 .
?templateMotifSequenceMatchRegionP00722167 faldo:begin ?templateMotifSequenceMatchBeginP00722168 .
?templateMotifSequenceMatchBeginP00722168 faldo:position ?templateMotifSequenceMatchBeginPositionP00722163 ;
faldo:reference isoform:P00722-1 .
?templateMotifSequenceProfileAlignmentOperationP00722169 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
?targetMotifMatch170 faldo:location ?targetMotifMatchRegionMatch171 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01687173 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00722MF_01687164 .
?targetMotifMatchRegionMatch171 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01687172 .
?targetMotifMatchRegionMatchBeginMF_01687172 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01687165 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01687173 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00722MF_01687162, 1, (STRLEN(?templateMotifCigarP00722MF_01687162) - STRLEN(REPLACE(?templateMotifCigarP00722MF_01687162, CONCAT('^(?:-*[^-]){', STR(((538 - ?templateMotifSequenceMatchBeginPositionP00722163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00722MF_01687164, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687164) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00722MF_01687164, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687164) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), '')))), '[^-]', ''))) AS ?step2175) .
BIND(((?step2175 + ?targetMotifMatchRegionMatchBeginPositionMF_01687165) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t176) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01687a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch181 faldo:location ?templateMotifSequenceMatchRegionP00722182 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00722184 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00722MF_01687177 .
?templateMotifSequenceMatchRegionP00722182 faldo:begin ?templateMotifSequenceMatchBeginP00722183 .
?templateMotifSequenceMatchBeginP00722183 faldo:position ?templateMotifSequenceMatchBeginPositionP00722178 ;
faldo:reference isoform:P00722-1 .
?templateMotifSequenceProfileAlignmentOperationP00722184 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
?targetMotifMatch185 faldo:location ?targetMotifMatchRegionMatch186 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01687188 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00722MF_01687179 .
?targetMotifMatchRegionMatch186 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01687187 .
?targetMotifMatchRegionMatchBeginMF_01687187 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01687180 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01687188 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00722MF_01687177, 1, (STRLEN(?templateMotifCigarP00722MF_01687177) - STRLEN(REPLACE(?templateMotifCigarP00722MF_01687177, CONCAT('^(?:-*[^-]){', STR(((202 - ?templateMotifSequenceMatchBeginPositionP00722178) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00722MF_01687179, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687179) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00722MF_01687179, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687179) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), '')))), '[^-]', ''))) AS ?step2190) .
BIND(((?step2190 + ?targetMotifMatchRegionMatchBeginPositionMF_01687180) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t191) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01687a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch196 faldo:location ?templateMotifSequenceMatchRegionP00722197 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00722199 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00722MF_01687192 .
?templateMotifSequenceMatchRegionP00722197 faldo:begin ?templateMotifSequenceMatchBeginP00722198 .
?templateMotifSequenceMatchBeginP00722198 faldo:position ?templateMotifSequenceMatchBeginPositionP00722193 ;
faldo:reference isoform:P00722-1 .
?templateMotifSequenceProfileAlignmentOperationP00722199 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
?targetMotifMatch200 faldo:location ?targetMotifMatchRegionMatch201 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01687203 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00722MF_01687194 .
?targetMotifMatchRegionMatch201 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01687202 .
?targetMotifMatchRegionMatchBeginMF_01687202 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01687195 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01687203 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00722MF_01687192, 1, (STRLEN(?templateMotifCigarP00722MF_01687192) - STRLEN(REPLACE(?templateMotifCigarP00722MF_01687192, CONCAT('^(?:-*[^-]){', STR(((417 - ?templateMotifSequenceMatchBeginPositionP00722193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1204) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00722MF_01687194, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687194) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00722MF_01687194, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687194) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), '')))), '[^-]', ''))) AS ?step2205) .
BIND(((?step2205 + ?targetMotifMatchRegionMatchBeginPositionMF_01687195) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t206) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01687a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch211 faldo:location ?templateMotifSequenceMatchRegionP00722212 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00722214 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00722MF_01687207 .
?templateMotifSequenceMatchRegionP00722212 faldo:begin ?templateMotifSequenceMatchBeginP00722213 .
?templateMotifSequenceMatchBeginP00722213 faldo:position ?templateMotifSequenceMatchBeginPositionP00722208 ;
faldo:reference isoform:P00722-1 .
?templateMotifSequenceProfileAlignmentOperationP00722214 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
?targetMotifMatch215 faldo:location ?targetMotifMatchRegionMatch216 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01687218 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00722MF_01687209 .
?targetMotifMatchRegionMatch216 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01687217 .
?targetMotifMatchRegionMatchBeginMF_01687217 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01687210 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01687218 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00722MF_01687207, 1, (STRLEN(?templateMotifCigarP00722MF_01687207) - STRLEN(REPLACE(?templateMotifCigarP00722MF_01687207, CONCAT('^(?:-*[^-]){', STR(((419 - ?templateMotifSequenceMatchBeginPositionP00722208) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1219) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00722MF_01687209, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687209) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00722MF_01687209, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687209) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), '')))), '[^-]', ''))) AS ?step2220) .
BIND(((?step2220 + ?targetMotifMatchRegionMatchBeginPositionMF_01687210) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t221) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01687a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch226 faldo:location ?templateMotifSequenceMatchRegionP00722227 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00722229 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00722MF_01687222 .
?templateMotifSequenceMatchRegionP00722227 faldo:begin ?templateMotifSequenceMatchBeginP00722228 .
?templateMotifSequenceMatchBeginP00722228 faldo:position ?templateMotifSequenceMatchBeginPositionP00722223 ;
faldo:reference isoform:P00722-1 .
?templateMotifSequenceProfileAlignmentOperationP00722229 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
?targetMotifMatch230 faldo:location ?targetMotifMatchRegionMatch231 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01687233 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00722MF_01687224 .
?targetMotifMatchRegionMatch231 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01687232 .
?targetMotifMatchRegionMatchBeginMF_01687232 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01687225 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01687233 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00722MF_01687222, 1, (STRLEN(?templateMotifCigarP00722MF_01687222) - STRLEN(REPLACE(?templateMotifCigarP00722MF_01687222, CONCAT('^(?:-*[^-]){', STR(((462 - ?templateMotifSequenceMatchBeginPositionP00722223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00722MF_01687224, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687224) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00722MF_01687224, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687224) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) .
BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_01687225) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t236) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01687a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch241 faldo:location ?templateMotifSequenceMatchRegionP00722242 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00722244 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00722MF_01687237 .
?templateMotifSequenceMatchRegionP00722242 faldo:begin ?templateMotifSequenceMatchBeginP00722243 .
?templateMotifSequenceMatchBeginP00722243 faldo:position ?templateMotifSequenceMatchBeginPositionP00722238 ;
faldo:reference isoform:P00722-1 .
?templateMotifSequenceProfileAlignmentOperationP00722244 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
?targetMotifMatch245 faldo:location ?targetMotifMatchRegionMatch246 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01687248 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00722MF_01687239 .
?targetMotifMatchRegionMatch246 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01687247 .
?targetMotifMatchRegionMatchBeginMF_01687247 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01687240 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01687248 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00722MF_01687237, 1, (STRLEN(?templateMotifCigarP00722MF_01687237) - STRLEN(REPLACE(?templateMotifCigarP00722MF_01687237, CONCAT('^(?:-*[^-]){', STR(((598 - ?templateMotifSequenceMatchBeginPositionP00722238) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1249) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00722MF_01687239, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687239) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00722MF_01687239, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687239) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), '')))), '[^-]', ''))) AS ?step2250) .
BIND(((?step2250 + ?targetMotifMatchRegionMatchBeginPositionMF_01687240) - 1) AS ?thisPositionOn62) .
BIND(?thisPositionOn62 AS ?thisPositionOn63) .
BIND(?this AS ?pfs1t251) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01687a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch256 faldo:location ?templateMotifSequenceMatchRegionP00722257 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00722259 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00722MF_01687252 .
?templateMotifSequenceMatchRegionP00722257 faldo:begin ?templateMotifSequenceMatchBeginP00722258 .
?templateMotifSequenceMatchBeginP00722258 faldo:position ?templateMotifSequenceMatchBeginPositionP00722253 ;
faldo:reference isoform:P00722-1 .
?templateMotifSequenceProfileAlignmentOperationP00722259 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
?targetMotifMatch260 faldo:location ?targetMotifMatchRegionMatch261 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01687263 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00722MF_01687254 .
?targetMotifMatchRegionMatch261 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01687262 .
?targetMotifMatchRegionMatchBeginMF_01687262 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01687255 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01687263 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00722MF_01687252, 1, (STRLEN(?templateMotifCigarP00722MF_01687252) - STRLEN(REPLACE(?templateMotifCigarP00722MF_01687252, CONCAT('^(?:-*[^-]){', STR(((602 - ?templateMotifSequenceMatchBeginPositionP00722253) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1264) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00722MF_01687254, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687254) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00722MF_01687254, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687254) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), '')))), '[^-]', ''))) AS ?step2265) .
BIND(((?step2265 + ?targetMotifMatchRegionMatchBeginPositionMF_01687255) - 1) AS ?thisPositionOn69) .
BIND(?thisPositionOn69 AS ?thisPositionOn70) .
BIND(?this AS ?pfs1t266) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'F')) .
BIND(URI(CONCAT(STR(?this), '#MF_01687a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch271 faldo:location ?templateMotifSequenceMatchRegionP00722272 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00722274 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00722MF_01687267 .
?templateMotifSequenceMatchRegionP00722272 faldo:begin ?templateMotifSequenceMatchBeginP00722273 .
?templateMotifSequenceMatchBeginP00722273 faldo:position ?templateMotifSequenceMatchBeginPositionP00722268 ;
faldo:reference isoform:P00722-1 .
?templateMotifSequenceProfileAlignmentOperationP00722274 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
?targetMotifMatch275 faldo:location ?targetMotifMatchRegionMatch276 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01687278 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00722MF_01687269 .
?targetMotifMatchRegionMatch276 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01687277 .
?targetMotifMatchRegionMatchBeginMF_01687277 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01687270 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01687278 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00722MF_01687267, 1, (STRLEN(?templateMotifCigarP00722MF_01687267) - STRLEN(REPLACE(?templateMotifCigarP00722MF_01687267, CONCAT('^(?:-*[^-]){', STR(((605 - ?templateMotifSequenceMatchBeginPositionP00722268) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1279) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00722MF_01687269, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687269) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00722MF_01687269, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687269) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), '')))), '[^-]', ''))) AS ?step2280) .
BIND(((?step2280 + ?targetMotifMatchRegionMatchBeginPositionMF_01687270) - 1) AS ?thisPositionOn76) .
BIND(?thisPositionOn76 AS ?thisPositionOn77) .
BIND(?this AS ?pfs1t281) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse74) .
FILTER (REGEX('[DN]', SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01687a72')) AS ?annotation72) .
BIND(?this AS ?pfs71) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch286 faldo:location ?templateMotifSequenceMatchRegionP00722287 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00722289 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00722MF_01687282 .
?templateMotifSequenceMatchRegionP00722287 faldo:begin ?templateMotifSequenceMatchBeginP00722288 .
?templateMotifSequenceMatchBeginP00722288 faldo:position ?templateMotifSequenceMatchBeginPositionP00722283 ;
faldo:reference isoform:P00722-1 .
?templateMotifSequenceProfileAlignmentOperationP00722289 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
?targetMotifMatch290 faldo:location ?targetMotifMatchRegionMatch291 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01687293 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00722MF_01687284 .
?targetMotifMatchRegionMatch291 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01687292 .
?targetMotifMatchRegionMatchBeginMF_01687292 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01687285 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01687293 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00722MF_01687282, 1, (STRLEN(?templateMotifCigarP00722MF_01687282) - STRLEN(REPLACE(?templateMotifCigarP00722MF_01687282, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionP00722283) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1294) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00722MF_01687284, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687284) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00722MF_01687284, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687284) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), '')))), '[^-]', ''))) AS ?step2295) .
BIND(((?step2295 + ?targetMotifMatchRegionMatchBeginPositionMF_01687285) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs1t296) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse81) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01687a79')) AS ?annotation79) .
BIND(?this AS ?pfs78) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch301 faldo:location ?templateMotifSequenceMatchRegionP00722302 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00722304 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00722MF_01687297 .
?templateMotifSequenceMatchRegionP00722302 faldo:begin ?templateMotifSequenceMatchBeginP00722303 .
?templateMotifSequenceMatchBeginP00722303 faldo:position ?templateMotifSequenceMatchBeginPositionP00722298 ;
faldo:reference isoform:P00722-1 .
?templateMotifSequenceProfileAlignmentOperationP00722304 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
?targetMotifMatch305 faldo:location ?targetMotifMatchRegionMatch306 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01687308 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00722MF_01687299 .
?targetMotifMatchRegionMatch306 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01687307 .
?targetMotifMatchRegionMatchBeginMF_01687307 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01687300 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01687308 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00722MF_01687297, 1, (STRLEN(?templateMotifCigarP00722MF_01687297) - STRLEN(REPLACE(?templateMotifCigarP00722MF_01687297, CONCAT('^(?:-*[^-]){', STR(((202 - ?templateMotifSequenceMatchBeginPositionP00722298) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1309) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00722MF_01687299, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687299) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00722MF_01687299, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687299) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), '')))), '[^-]', ''))) AS ?step2310) .
BIND(((?step2310 + ?targetMotifMatchRegionMatchBeginPositionMF_01687300) - 1) AS ?thisPositionOn92) .
BIND(?thisPositionOn92 AS ?thisPositionOn93) .
BIND(?this AS ?pfs1t311) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse89) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01687a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch316 faldo:location ?templateMotifSequenceMatchRegionP00722317 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00722319 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00722MF_01687312 .
?templateMotifSequenceMatchRegionP00722317 faldo:begin ?templateMotifSequenceMatchBeginP00722318 .
?templateMotifSequenceMatchBeginP00722318 faldo:position ?templateMotifSequenceMatchBeginPositionP00722313 ;
faldo:reference isoform:P00722-1 .
?templateMotifSequenceProfileAlignmentOperationP00722319 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
?targetMotifMatch320 faldo:location ?targetMotifMatchRegionMatch321 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01687323 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00722MF_01687314 .
?targetMotifMatchRegionMatch321 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01687322 .
?targetMotifMatchRegionMatchBeginMF_01687322 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01687315 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01687323 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00722MF_01687312, 1, (STRLEN(?templateMotifCigarP00722MF_01687312) - STRLEN(REPLACE(?templateMotifCigarP00722MF_01687312, CONCAT('^(?:-*[^-]){', STR(((462 - ?templateMotifSequenceMatchBeginPositionP00722313) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1324) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00722MF_01687314, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687314) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00722MF_01687314, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687314) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), '')))), '[^-]', ''))) AS ?step2325) .
BIND(((?step2325 + ?targetMotifMatchRegionMatchBeginPositionMF_01687315) - 1) AS ?thisPositionOn100) .
BIND(?thisPositionOn100 AS ?thisPositionOn101) .
BIND(?this AS ?pfs1t326) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfsb96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfse97) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn100, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01687a95')) AS ?annotation95) .
BIND(?this AS ?pfs94) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch331 faldo:location ?templateMotifSequenceMatchRegionP00722332 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00722334 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00722MF_01687327 .
?templateMotifSequenceMatchRegionP00722332 faldo:begin ?templateMotifSequenceMatchBeginP00722333 .
?templateMotifSequenceMatchBeginP00722333 faldo:position ?templateMotifSequenceMatchBeginPositionP00722328 ;
faldo:reference isoform:P00722-1 .
?templateMotifSequenceProfileAlignmentOperationP00722334 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
?targetMotifMatch335 faldo:location ?targetMotifMatchRegionMatch336 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01687338 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00722MF_01687329 .
?targetMotifMatchRegionMatch336 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01687337 .
?targetMotifMatchRegionMatchBeginMF_01687337 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01687330 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01687338 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00722MF_01687327, 1, (STRLEN(?templateMotifCigarP00722MF_01687327) - STRLEN(REPLACE(?templateMotifCigarP00722MF_01687327, CONCAT('^(?:-*[^-]){', STR(((605 - ?templateMotifSequenceMatchBeginPositionP00722328) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1339) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00722MF_01687329, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687329) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00722MF_01687329, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687329) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), '')))), '[^-]', ''))) AS ?step2340) .
BIND(((?step2340 + ?targetMotifMatchRegionMatchBeginPositionMF_01687330) - 1) AS ?thisPositionOn108) .
BIND(?thisPositionOn108 AS ?thisPositionOn109) .
BIND(?this AS ?pfs1t341) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfsb104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfse105) .
FILTER (REGEX('[DN]', SUBSTR(?thisSequenceValue, ?thisPositionOn108, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01687a103')) AS ?annotation103) .
BIND(?this AS ?pfs102) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch346 faldo:location ?templateMotifSequenceMatchRegionP00722347 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00722349 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00722MF_01687342 .
?templateMotifSequenceMatchRegionP00722347 faldo:begin ?templateMotifSequenceMatchBeginP00722348 .
?templateMotifSequenceMatchBeginP00722348 faldo:position ?templateMotifSequenceMatchBeginPositionP00722343 ;
faldo:reference isoform:P00722-1 .
?templateMotifSequenceProfileAlignmentOperationP00722349 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
?targetMotifMatch350 faldo:location ?targetMotifMatchRegionMatch351 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01687353 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00722MF_01687344 .
?targetMotifMatchRegionMatch351 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01687352 .
?targetMotifMatchRegionMatchBeginMF_01687352 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01687345 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01687353 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00722MF_01687342, 1, (STRLEN(?templateMotifCigarP00722MF_01687342) - STRLEN(REPLACE(?templateMotifCigarP00722MF_01687342, CONCAT('^(?:-*[^-]){', STR(((1000 - ?templateMotifSequenceMatchBeginPositionP00722343) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1354) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00722MF_01687344, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687344) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1354), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00722MF_01687344, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687344) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1354), '}'), '')))), '[^-]', ''))) AS ?step2355) .
BIND(((?step2355 + ?targetMotifMatchRegionMatchBeginPositionMF_01687345) - 1) AS ?thisPositionOn116) .
BIND(?thisPositionOn116 AS ?thisPositionOn117) .
BIND(?this AS ?pfs1t356) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfsb112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfse113) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn116, 1) = 'W')) .
BIND(URI(CONCAT(STR(?this), '#MF_01687a111')) AS ?annotation111) .
BIND(?this AS ?pfs110) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch361 faldo:location ?templateMotifSequenceMatchRegionP00722362 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00722364 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00722MF_01687357 .
?templateMotifSequenceMatchRegionP00722362 faldo:begin ?templateMotifSequenceMatchBeginP00722363 .
?templateMotifSequenceMatchBeginP00722363 faldo:position ?templateMotifSequenceMatchBeginPositionP00722358 ;
faldo:reference isoform:P00722-1 .
?templateMotifSequenceProfileAlignmentOperationP00722364 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
?targetMotifMatch365 faldo:location ?targetMotifMatchRegionMatch366 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01687368 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00722MF_01687359 .
?targetMotifMatchRegionMatch366 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01687367 .
?targetMotifMatchRegionMatchBeginMF_01687367 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01687360 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01687368 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00722MF_01687357, 1, (STRLEN(?templateMotifCigarP00722MF_01687357) - STRLEN(REPLACE(?templateMotifCigarP00722MF_01687357, CONCAT('^(?:-*[^-]){', STR(((358 - ?templateMotifSequenceMatchBeginPositionP00722358) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1369) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00722MF_01687359, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687359) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1369), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00722MF_01687359, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687359) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1369), '}'), '')))), '[^-]', ''))) AS ?step2370) .
BIND(((?step2370 + ?targetMotifMatchRegionMatchBeginPositionMF_01687360) - 1) AS ?thisPositionOn122) .
BIND(?thisPositionOn122 AS ?thisPositionOn123) .
BIND(?this AS ?pfs1t371) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn122))) AS ?pfsb120) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn123))) AS ?pfse121) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn122, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01687a119')) AS ?annotation119) .
BIND(?this AS ?pfs118) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch376 faldo:location ?templateMotifSequenceMatchRegionP00722377 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00722379 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00722MF_01687372 .
?templateMotifSequenceMatchRegionP00722377 faldo:begin ?templateMotifSequenceMatchBeginP00722378 .
?templateMotifSequenceMatchBeginP00722378 faldo:position ?templateMotifSequenceMatchBeginPositionP00722373 ;
faldo:reference isoform:P00722-1 .
?templateMotifSequenceProfileAlignmentOperationP00722379 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
?targetMotifMatch380 faldo:location ?targetMotifMatchRegionMatch381 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01687383 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00722MF_01687374 .
?targetMotifMatchRegionMatch381 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01687382 .
?targetMotifMatchRegionMatchBeginMF_01687382 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01687375 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01687383 edam:has_input signature:MF_01687 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00722MF_01687372, 1, (STRLEN(?templateMotifCigarP00722MF_01687372) - STRLEN(REPLACE(?templateMotifCigarP00722MF_01687372, CONCAT('^(?:-*[^-]){', STR(((392 - ?templateMotifSequenceMatchBeginPositionP00722373) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1384) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00722MF_01687374, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687374) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1384), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00722MF_01687374, 1, (STRLEN(?targetMotifMatchCigarP00722MF_01687374) - STRLEN(REPLACE(?targetMotifMatchCigarP00722MF_01687374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1384), '}'), '')))), '[^-]', ''))) AS ?step2385) .
BIND(((?step2385 + ?targetMotifMatchRegionMatchBeginPositionMF_01687375) - 1) AS ?thisPositionOn128) .
BIND(?thisPositionOn128 AS ?thisPositionOn129) .
BIND(?this AS ?pfs1t386) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfsb126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn129))) AS ?pfse127) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn128, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01687a125')) AS ?annotation125) .
BIND(?this AS ?pfs124) .
}
}
"xsd:string |
