| http://purl.uniprot.org/unirules/MF_01695#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:620361 up:source unirule:MF_01695 .
_:620362 up:source unirule:MF_01695 .
_:620363 up:source unirule:MF_01695 .
_:620364 up:source unirule:MF_01695 .
_:620365 up:source unirule:MF_01695 .
_:620366 up:source unirule:MF_01695 .
_:620367 up:source unirule:MF_01695 .
_:620368 up:source unirule:MF_01695 .
_:620369 up:source unirule:MF_01695 .
_:620370 up:source unirule:MF_01695 .
_:620371 up:source unirule:MF_01695 .
_:620372 up:source unirule:MF_01695 .
_:620373 up:source unirule:MF_01695 .
_:620374 up:source unirule:MF_01695 .
_:620375 up:source unirule:MF_01695 .
_:620376 up:source unirule:MF_01695 .
_:620377 up:source unirule:MF_01695 .
_:620378 up:source unirule:MF_01695 .
_:620379 up:source unirule:MF_01695 .
_:620380 up:source unirule:MF_01695 .
_:620381 up:source unirule:MF_01695 .
_:620382 up:source unirule:MF_01695 .
_:620383 up:source unirule:MF_01695 .
_:620384 up:source unirule:MF_01695 .
_:620385 up:source unirule:MF_01695 .
_:620386 up:source unirule:MF_01695 .
_:620387 up:source unirule:MF_01695 .
_:620388 up:source unirule:MF_01695 .
_:620389 up:source unirule:MF_01695 .
_:620390 up:source unirule:MF_01695 .
_:620391 up:source unirule:MF_01695 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0000287 ,
GO:0008375 ,
GO:0010125 ,
keyword:328 ,
keyword:460 ,
keyword:479 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.4.1.250' ;
up:fullName 'D-inositol-3-phosphate glycosyltransferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'N-acetylglucosamine-inositol-phosphate N-acetylglucosaminyltransferase' ;
up:shortName 'GlcNAc-Ins-P N-acetylglucosaminyltransferase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'mshA' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the transfer of a N-acetyl-glucosamine moiety to 1D-myo-inositol 3-phosphate to produce 1D-myo-inositol 2-acetamido-2-deoxy-glucopyranoside 3-phosphate in the mycothiol biosynthesis pathway.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the glycosyltransferase group 1 family. MshA subfamily.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:57705 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:58401 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:18420 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:18420 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:18420 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:18420 .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:58401 .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf chebi:57705 .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
up:ligand ?ligand68 ;
rdf:type up:Binding_Site_Annotation .
?pfsb66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?ligand68 rdfs:subClassOf chebi:58401 .
?pfs71 up:annotation ?annotation72 .
?annotation72 faldo:begin ?pfsb73 ;
faldo:end ?pfse74 ;
up:ligand ?ligand75 ;
rdf:type up:Binding_Site_Annotation .
?pfsb73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?pfse74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?ligand75 rdfs:subClassOf chebi:58401 .
?pfs78 up:annotation ?annotation79 .
?annotation79 faldo:begin ?pfsb80 ;
faldo:end ?pfse81 ;
up:ligand ?ligand82 ;
rdf:type up:Binding_Site_Annotation .
?pfsb80 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?pfse81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?ligand82 rdfs:subClassOf chebi:58401 .
?pfs85 up:annotation ?annotation86 .
?annotation86 faldo:begin ?pfsb87 ;
faldo:end ?pfse88 ;
up:ligand ?ligand89 ;
rdf:type up:Binding_Site_Annotation .
?pfsb87 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?pfse88 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?ligand89 rdfs:subClassOf chebi:58401 .
?pfs92 up:annotation ?annotation93 .
?annotation93 faldo:begin ?pfsb94 ;
faldo:end ?pfse95 ;
up:ligand ?ligand96 ;
rdf:type up:Binding_Site_Annotation .
?pfsb94 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?pfse95 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?ligand96 rdfs:subClassOf chebi:57705 .
?pfs99 up:annotation ?annotation100 .
?annotation100 faldo:begin ?pfsb101 ;
faldo:end ?pfse102 ;
up:ligand ?ligand103 ;
rdf:type up:Binding_Site_Annotation .
?pfsb101 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
?pfse102 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?ligand103 rdfs:subClassOf chebi:57705 .
?pfs106 up:annotation ?annotation107 .
?annotation107 faldo:begin ?pfsb108 ;
faldo:end ?pfse109 ;
up:ligand ?ligand110 ;
rdf:type up:Binding_Site_Annotation .
?pfsb108 faldo:position ?thisPositionOn111 ;
rdf:type faldo:ExactPosition .
?pfse109 faldo:position ?thisPositionOn112 ;
rdf:type faldo:ExactPosition .
?ligand110 rdfs:subClassOf chebi:57705 .
?pfs113 up:annotation ?annotation114 .
?annotation114 faldo:begin ?pfsb115 ;
faldo:end ?pfse116 ;
up:ligand ?ligand117 ;
rdf:type up:Binding_Site_Annotation .
?pfsb115 faldo:position ?thisPositionOn118 ;
rdf:type faldo:ExactPosition .
?pfse116 faldo:position ?thisPositionOn119 ;
rdf:type faldo:ExactPosition .
?ligand117 rdfs:subClassOf chebi:57705 .
?pfs120 up:annotation ?annotation121 .
?annotation121 faldo:begin ?pfsb122 ;
faldo:end ?pfse123 ;
up:ligand ?ligand124 ;
rdf:type up:Binding_Site_Annotation .
?pfsb122 faldo:position ?thisPositionOn125 ;
rdf:type faldo:ExactPosition .
?pfse123 faldo:position ?thisPositionOn126 ;
rdf:type faldo:ExactPosition .
?ligand124 rdfs:subClassOf chebi:57705 .
_:620392 a rdf:Statement ;
up:attribution _:620361 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:620393 a rdf:Statement ;
up:attribution _:620362 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:620394 a rdf:Statement ;
up:attribution _:620363 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:620395 a rdf:Statement ;
up:attribution _:620364 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:620396 a rdf:Statement ;
up:attribution _:620365 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:620397 a rdf:Statement ;
up:attribution _:620366 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:620398 a rdf:Statement ;
up:attribution _:620367 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:620399 a rdf:Statement ;
up:attribution _:620368 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:328 .
_:620400 a rdf:Statement ;
up:attribution _:620369 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:620401 a rdf:Statement ;
up:attribution _:620370 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:620402 a rdf:Statement ;
up:attribution _:620371 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:620403 a rdf:Statement ;
up:attribution _:620372 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:620404 a rdf:Statement ;
up:attribution _:620373 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008375 .
_:620405 a rdf:Statement ;
up:attribution _:620374 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0010125 .
_:620406 a rdf:Statement ;
up:source unirule:MF_01695 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:620407 a rdf:Statement ;
up:attribution _:620375 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:620408 a rdf:Statement ;
up:source unirule:MF_01695 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:620409 a rdf:Statement ;
up:attribution _:620376 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:620410 a rdf:Statement ;
up:source unirule:MF_01695 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:620411 a rdf:Statement ;
up:attribution _:620377 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:620412 a rdf:Statement ;
up:source unirule:MF_01695 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:620413 a rdf:Statement ;
up:attribution _:620378 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:620414 a rdf:Statement ;
up:source unirule:MF_01695 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:620415 a rdf:Statement ;
up:attribution _:620379 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:620416 a rdf:Statement ;
up:source unirule:MF_01695 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:620417 a rdf:Statement ;
up:attribution _:620380 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:620418 a rdf:Statement ;
up:source unirule:MF_01695 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:620419 a rdf:Statement ;
up:attribution _:620381 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:620420 a rdf:Statement ;
up:source unirule:MF_01695 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:620421 a rdf:Statement ;
up:attribution _:620382 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:620422 a rdf:Statement ;
up:source unirule:MF_01695 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:620423 a rdf:Statement ;
up:attribution _:620383 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:620424 a rdf:Statement ;
up:source unirule:MF_01695 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:620425 a rdf:Statement ;
up:attribution _:620384 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:620426 a rdf:Statement ;
up:source unirule:MF_01695 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:620427 a rdf:Statement ;
up:attribution _:620385 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:620428 a rdf:Statement ;
up:source unirule:MF_01695 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
_:620429 a rdf:Statement ;
up:attribution _:620386 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
_:620430 a rdf:Statement ;
up:source unirule:MF_01695 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:620431 a rdf:Statement ;
up:attribution _:620387 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:620432 a rdf:Statement ;
up:source unirule:MF_01695 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
_:620433 a rdf:Statement ;
up:attribution _:620388 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
_:620434 a rdf:Statement ;
up:source unirule:MF_01695 ;
rdf:subject ?pfs106 ;
rdf:predicate up:annotation ;
rdf:object ?annotation107 .
_:620435 a rdf:Statement ;
up:attribution _:620389 ;
rdf:subject ?pfs106 ;
rdf:predicate up:annotation ;
rdf:object ?annotation107 .
_:620436 a rdf:Statement ;
up:source unirule:MF_01695 ;
rdf:subject ?pfs113 ;
rdf:predicate up:annotation ;
rdf:object ?annotation114 .
_:620437 a rdf:Statement ;
up:attribution _:620390 ;
rdf:subject ?pfs113 ;
rdf:predicate up:annotation ;
rdf:object ?annotation114 .
_:620438 a rdf:Statement ;
up:source unirule:MF_01695 ;
rdf:subject ?pfs120 ;
rdf:predicate up:annotation ;
rdf:object ?annotation121 .
_:620439 a rdf:Statement ;
up:attribution _:620391 ;
rdf:subject ?pfs120 ;
rdf:predicate up:annotation ;
rdf:object ?annotation121 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01695
#Rule MF_01695 Created by:? on:2010-09-20 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01695 .
?thisOrganism rdfs:subClassOf+ taxon:201174 .
BIND(URI(CONCAT(STR(?this), '#MF_01695a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01695a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01695a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01695a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01695a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01695a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionQ8NTA6132 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8NTA6134 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8NTA6MF_01695127 .
?templateMotifSequenceMatchRegionQ8NTA6132 faldo:begin ?templateMotifSequenceMatchBeginQ8NTA6133 .
?templateMotifSequenceMatchBeginQ8NTA6133 faldo:position ?templateMotifSequenceMatchBeginPositionQ8NTA6128 ;
faldo:reference isoform:Q8NTA6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8NTA6134 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01695138 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8NTA6MF_01695129 .
?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01695137 .
?targetMotifMatchRegionMatchBeginMF_01695137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01695130 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01695138 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8NTA6MF_01695127, 1, (STRLEN(?templateMotifCigarQ8NTA6MF_01695127) - STRLEN(REPLACE(?templateMotifCigarQ8NTA6MF_01695127, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionQ8NTA6128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695129, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695129) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695129, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695129) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) .
BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_01695130) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8NTA6MF_01695127, 1, (STRLEN(?templateMotifCigarQ8NTA6MF_01695127) - STRLEN(REPLACE(?templateMotifCigarQ8NTA6MF_01695127, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionQ8NTA6128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695129, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695129) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695129, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695129) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_01695130) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)) = 'QP')) .
BIND(URI(CONCAT(STR(?this), '#MF_01695a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionQ8NTA6149 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8NTA6151 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8NTA6MF_01695144 .
?templateMotifSequenceMatchRegionQ8NTA6149 faldo:begin ?templateMotifSequenceMatchBeginQ8NTA6150 .
?templateMotifSequenceMatchBeginQ8NTA6150 faldo:position ?templateMotifSequenceMatchBeginPositionQ8NTA6145 ;
faldo:reference isoform:Q8NTA6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8NTA6151 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01695155 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8NTA6MF_01695146 .
?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01695154 .
?targetMotifMatchRegionMatchBeginMF_01695154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01695147 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01695155 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8NTA6MF_01695144, 1, (STRLEN(?templateMotifCigarQ8NTA6MF_01695144) - STRLEN(REPLACE(?templateMotifCigarQ8NTA6MF_01695144, CONCAT('^(?:-*[^-]){', STR(((20 - ?templateMotifSequenceMatchBeginPositionQ8NTA6145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695146, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695146) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695146, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695146) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) .
BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_01695147) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8NTA6MF_01695144, 1, (STRLEN(?templateMotifCigarQ8NTA6MF_01695144) - STRLEN(REPLACE(?templateMotifCigarQ8NTA6MF_01695144, CONCAT('^(?:-*[^-]){', STR(((25 - ?templateMotifSequenceMatchBeginPositionQ8NTA6145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695146, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695146) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695146, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695146) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) .
BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_01695147) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t160) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER (REGEX('D[ARNDCQEGHILKMFPSTWYVBZJUOX]G[ARNDCQEGHILKMFPSTWYVBZJUOX][ML]N', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01695a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch165 faldo:location ?templateMotifSequenceMatchRegionQ8NTA6166 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8NTA6168 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8NTA6MF_01695161 .
?templateMotifSequenceMatchRegionQ8NTA6166 faldo:begin ?templateMotifSequenceMatchBeginQ8NTA6167 .
?templateMotifSequenceMatchBeginQ8NTA6167 faldo:position ?templateMotifSequenceMatchBeginPositionQ8NTA6162 ;
faldo:reference isoform:Q8NTA6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8NTA6168 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
?targetMotifMatch169 faldo:location ?targetMotifMatchRegionMatch170 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01695172 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8NTA6MF_01695163 .
?targetMotifMatchRegionMatch170 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01695171 .
?targetMotifMatchRegionMatchBeginMF_01695171 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01695164 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01695172 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8NTA6MF_01695161, 1, (STRLEN(?templateMotifCigarQ8NTA6MF_01695161) - STRLEN(REPLACE(?templateMotifCigarQ8NTA6MF_01695161, CONCAT('^(?:-*[^-]){', STR(((303 - ?templateMotifSequenceMatchBeginPositionQ8NTA6162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695163, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695163) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695163, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695163) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) .
BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_01695164) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t175) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER (REGEX('[YFIM]', SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01695a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch180 faldo:location ?templateMotifSequenceMatchRegionQ8NTA6181 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8NTA6183 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8NTA6MF_01695176 .
?templateMotifSequenceMatchRegionQ8NTA6181 faldo:begin ?templateMotifSequenceMatchBeginQ8NTA6182 .
?templateMotifSequenceMatchBeginQ8NTA6182 faldo:position ?templateMotifSequenceMatchBeginPositionQ8NTA6177 ;
faldo:reference isoform:Q8NTA6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8NTA6183 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
?targetMotifMatch184 faldo:location ?targetMotifMatchRegionMatch185 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01695187 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8NTA6MF_01695178 .
?targetMotifMatchRegionMatch185 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01695186 .
?targetMotifMatchRegionMatchBeginMF_01695186 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01695179 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01695187 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8NTA6MF_01695176, 1, (STRLEN(?templateMotifCigarQ8NTA6MF_01695176) - STRLEN(REPLACE(?templateMotifCigarQ8NTA6MF_01695176, CONCAT('^(?:-*[^-]){', STR(((304 - ?templateMotifSequenceMatchBeginPositionQ8NTA6177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695178, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695178) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695178, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695178) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) .
BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_01695179) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t190) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER (REGEX('[RHQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01695a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch195 faldo:location ?templateMotifSequenceMatchRegionQ8NTA6196 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8NTA6198 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8NTA6MF_01695191 .
?templateMotifSequenceMatchRegionQ8NTA6196 faldo:begin ?templateMotifSequenceMatchBeginQ8NTA6197 .
?templateMotifSequenceMatchBeginQ8NTA6197 faldo:position ?templateMotifSequenceMatchBeginPositionQ8NTA6192 ;
faldo:reference isoform:Q8NTA6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8NTA6198 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
?targetMotifMatch199 faldo:location ?targetMotifMatchRegionMatch200 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01695202 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8NTA6MF_01695193 .
?targetMotifMatchRegionMatch200 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01695201 .
?targetMotifMatchRegionMatchBeginMF_01695201 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01695194 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01695202 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8NTA6MF_01695191, 1, (STRLEN(?templateMotifCigarQ8NTA6MF_01695191) - STRLEN(REPLACE(?templateMotifCigarQ8NTA6MF_01695191, CONCAT('^(?:-*[^-]){', STR(((306 - ?templateMotifSequenceMatchBeginPositionQ8NTA6192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1203) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695193, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695193) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695193, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695193) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), '')))), '[^-]', ''))) AS ?step2204) .
BIND(((?step2204 + ?targetMotifMatchRegionMatchBeginPositionMF_01695194) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t205) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER (REGEX('[ACSV]', SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01695a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch210 faldo:location ?templateMotifSequenceMatchRegionQ8NTA6211 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8NTA6213 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8NTA6MF_01695206 .
?templateMotifSequenceMatchRegionQ8NTA6211 faldo:begin ?templateMotifSequenceMatchBeginQ8NTA6212 .
?templateMotifSequenceMatchBeginQ8NTA6212 faldo:position ?templateMotifSequenceMatchBeginPositionQ8NTA6207 ;
faldo:reference isoform:Q8NTA6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8NTA6213 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
?targetMotifMatch214 faldo:location ?targetMotifMatchRegionMatch215 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01695217 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8NTA6MF_01695208 .
?targetMotifMatchRegionMatch215 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01695216 .
?targetMotifMatchRegionMatchBeginMF_01695216 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01695209 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01695217 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8NTA6MF_01695206, 1, (STRLEN(?templateMotifCigarQ8NTA6MF_01695206) - STRLEN(REPLACE(?templateMotifCigarQ8NTA6MF_01695206, CONCAT('^(?:-*[^-]){', STR(((330 - ?templateMotifSequenceMatchBeginPositionQ8NTA6207) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1218) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695208, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695208) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695208, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695208) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), '')))), '[^-]', ''))) AS ?step2219) .
BIND(((?step2219 + ?targetMotifMatchRegionMatchBeginPositionMF_01695209) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t220) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01695a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch225 faldo:location ?templateMotifSequenceMatchRegionQ8NTA6226 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8NTA6228 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8NTA6MF_01695221 .
?templateMotifSequenceMatchRegionQ8NTA6226 faldo:begin ?templateMotifSequenceMatchBeginQ8NTA6227 .
?templateMotifSequenceMatchBeginQ8NTA6227 faldo:position ?templateMotifSequenceMatchBeginPositionQ8NTA6222 ;
faldo:reference isoform:Q8NTA6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8NTA6228 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
?targetMotifMatch229 faldo:location ?targetMotifMatchRegionMatch230 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01695232 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8NTA6MF_01695223 .
?targetMotifMatchRegionMatch230 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01695231 .
?targetMotifMatchRegionMatchBeginMF_01695231 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01695224 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01695232 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8NTA6MF_01695221, 1, (STRLEN(?templateMotifCigarQ8NTA6MF_01695221) - STRLEN(REPLACE(?templateMotifCigarQ8NTA6MF_01695221, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionQ8NTA6222) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1233) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695223, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695223) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695223, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695223) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), '')))), '[^-]', ''))) AS ?step2234) .
BIND(((?step2234 + ?targetMotifMatchRegionMatchBeginPositionMF_01695224) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t235) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01695a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch240 faldo:location ?templateMotifSequenceMatchRegionQ8NTA6241 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8NTA6243 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8NTA6MF_01695236 .
?templateMotifSequenceMatchRegionQ8NTA6241 faldo:begin ?templateMotifSequenceMatchBeginQ8NTA6242 .
?templateMotifSequenceMatchBeginQ8NTA6242 faldo:position ?templateMotifSequenceMatchBeginPositionQ8NTA6237 ;
faldo:reference isoform:Q8NTA6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8NTA6243 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
?targetMotifMatch244 faldo:location ?targetMotifMatchRegionMatch245 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01695247 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8NTA6MF_01695238 .
?targetMotifMatchRegionMatch245 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01695246 .
?targetMotifMatchRegionMatchBeginMF_01695246 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01695239 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01695247 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8NTA6MF_01695236, 1, (STRLEN(?templateMotifCigarQ8NTA6MF_01695236) - STRLEN(REPLACE(?templateMotifCigarQ8NTA6MF_01695236, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionQ8NTA6237) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1248) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695238, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695238) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695238, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695238) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), '')))), '[^-]', ''))) AS ?step2249) .
BIND(((?step2249 + ?targetMotifMatchRegionMatchBeginPositionMF_01695239) - 1) AS ?thisPositionOn62) .
BIND(?thisPositionOn62 AS ?thisPositionOn63) .
BIND(?this AS ?pfs1t250) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01695a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch255 faldo:location ?templateMotifSequenceMatchRegionQ8NTA6256 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8NTA6258 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8NTA6MF_01695251 .
?templateMotifSequenceMatchRegionQ8NTA6256 faldo:begin ?templateMotifSequenceMatchBeginQ8NTA6257 .
?templateMotifSequenceMatchBeginQ8NTA6257 faldo:position ?templateMotifSequenceMatchBeginPositionQ8NTA6252 ;
faldo:reference isoform:Q8NTA6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8NTA6258 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
?targetMotifMatch259 faldo:location ?targetMotifMatchRegionMatch260 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01695262 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8NTA6MF_01695253 .
?targetMotifMatchRegionMatch260 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01695261 .
?targetMotifMatchRegionMatchBeginMF_01695261 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01695254 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01695262 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8NTA6MF_01695251, 1, (STRLEN(?templateMotifCigarQ8NTA6MF_01695251) - STRLEN(REPLACE(?templateMotifCigarQ8NTA6MF_01695251, CONCAT('^(?:-*[^-]){', STR(((78 - ?templateMotifSequenceMatchBeginPositionQ8NTA6252) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1263) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695253, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695253) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695253, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695253) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), '')))), '[^-]', ''))) AS ?step2264) .
BIND(((?step2264 + ?targetMotifMatchRegionMatchBeginPositionMF_01695254) - 1) AS ?thisPositionOn69) .
BIND(?thisPositionOn69 AS ?thisPositionOn70) .
BIND(?this AS ?pfs1t265) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) .
FILTER (REGEX('[KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01695a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch270 faldo:location ?templateMotifSequenceMatchRegionQ8NTA6271 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8NTA6273 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8NTA6MF_01695266 .
?templateMotifSequenceMatchRegionQ8NTA6271 faldo:begin ?templateMotifSequenceMatchBeginQ8NTA6272 .
?templateMotifSequenceMatchBeginQ8NTA6272 faldo:position ?templateMotifSequenceMatchBeginPositionQ8NTA6267 ;
faldo:reference isoform:Q8NTA6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8NTA6273 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
?targetMotifMatch274 faldo:location ?targetMotifMatchRegionMatch275 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01695277 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8NTA6MF_01695268 .
?targetMotifMatchRegionMatch275 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01695276 .
?targetMotifMatchRegionMatchBeginMF_01695276 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01695269 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01695277 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8NTA6MF_01695266, 1, (STRLEN(?templateMotifCigarQ8NTA6MF_01695266) - STRLEN(REPLACE(?templateMotifCigarQ8NTA6MF_01695266, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionQ8NTA6267) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1278) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695268, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695268) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695268, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695268) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), '')))), '[^-]', ''))) AS ?step2279) .
BIND(((?step2279 + ?targetMotifMatchRegionMatchBeginPositionMF_01695269) - 1) AS ?thisPositionOn76) .
BIND(?thisPositionOn76 AS ?thisPositionOn77) .
BIND(?this AS ?pfs1t280) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse74) .
FILTER (REGEX('[YH]', SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01695a72')) AS ?annotation72) .
BIND(?this AS ?pfs71) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch285 faldo:location ?templateMotifSequenceMatchRegionQ8NTA6286 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8NTA6288 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8NTA6MF_01695281 .
?templateMotifSequenceMatchRegionQ8NTA6286 faldo:begin ?templateMotifSequenceMatchBeginQ8NTA6287 .
?templateMotifSequenceMatchBeginQ8NTA6287 faldo:position ?templateMotifSequenceMatchBeginPositionQ8NTA6282 ;
faldo:reference isoform:Q8NTA6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8NTA6288 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
?targetMotifMatch289 faldo:location ?targetMotifMatchRegionMatch290 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01695292 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8NTA6MF_01695283 .
?targetMotifMatchRegionMatch290 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01695291 .
?targetMotifMatchRegionMatchBeginMF_01695291 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01695284 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01695292 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8NTA6MF_01695281, 1, (STRLEN(?templateMotifCigarQ8NTA6MF_01695281) - STRLEN(REPLACE(?templateMotifCigarQ8NTA6MF_01695281, CONCAT('^(?:-*[^-]){', STR(((134 - ?templateMotifSequenceMatchBeginPositionQ8NTA6282) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1293) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695283, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695283) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1293), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695283, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695283) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1293), '}'), '')))), '[^-]', ''))) AS ?step2294) .
BIND(((?step2294 + ?targetMotifMatchRegionMatchBeginPositionMF_01695284) - 1) AS ?thisPositionOn83) .
BIND(?thisPositionOn83 AS ?thisPositionOn84) .
BIND(?this AS ?pfs1t295) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse81) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn83, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01695a79')) AS ?annotation79) .
BIND(?this AS ?pfs78) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch300 faldo:location ?templateMotifSequenceMatchRegionQ8NTA6301 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8NTA6303 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8NTA6MF_01695296 .
?templateMotifSequenceMatchRegionQ8NTA6301 faldo:begin ?templateMotifSequenceMatchBeginQ8NTA6302 .
?templateMotifSequenceMatchBeginQ8NTA6302 faldo:position ?templateMotifSequenceMatchBeginPositionQ8NTA6297 ;
faldo:reference isoform:Q8NTA6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8NTA6303 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
?targetMotifMatch304 faldo:location ?targetMotifMatchRegionMatch305 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01695307 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8NTA6MF_01695298 .
?targetMotifMatchRegionMatch305 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01695306 .
?targetMotifMatchRegionMatchBeginMF_01695306 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01695299 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01695307 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8NTA6MF_01695296, 1, (STRLEN(?templateMotifCigarQ8NTA6MF_01695296) - STRLEN(REPLACE(?templateMotifCigarQ8NTA6MF_01695296, CONCAT('^(?:-*[^-]){', STR(((154 - ?templateMotifSequenceMatchBeginPositionQ8NTA6297) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1308) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695298, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695298) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1308), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695298, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695298) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1308), '}'), '')))), '[^-]', ''))) AS ?step2309) .
BIND(((?step2309 + ?targetMotifMatchRegionMatchBeginPositionMF_01695299) - 1) AS ?thisPositionOn90) .
BIND(?thisPositionOn90 AS ?thisPositionOn91) .
BIND(?this AS ?pfs1t310) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfsb87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfse88) .
FILTER (REGEX('[RQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn90, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01695a86')) AS ?annotation86) .
BIND(?this AS ?pfs85) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch315 faldo:location ?templateMotifSequenceMatchRegionQ8NTA6316 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8NTA6318 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8NTA6MF_01695311 .
?templateMotifSequenceMatchRegionQ8NTA6316 faldo:begin ?templateMotifSequenceMatchBeginQ8NTA6317 .
?templateMotifSequenceMatchBeginQ8NTA6317 faldo:position ?templateMotifSequenceMatchBeginPositionQ8NTA6312 ;
faldo:reference isoform:Q8NTA6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8NTA6318 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
?targetMotifMatch319 faldo:location ?targetMotifMatchRegionMatch320 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01695322 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8NTA6MF_01695313 .
?targetMotifMatchRegionMatch320 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01695321 .
?targetMotifMatchRegionMatchBeginMF_01695321 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01695314 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01695322 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8NTA6MF_01695311, 1, (STRLEN(?templateMotifCigarQ8NTA6MF_01695311) - STRLEN(REPLACE(?templateMotifCigarQ8NTA6MF_01695311, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionQ8NTA6312) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1323) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695313, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695313) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695313, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1323), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695313, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695313) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695313, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1323), '}'), '')))), '[^-]', ''))) AS ?step2324) .
BIND(((?step2324 + ?targetMotifMatchRegionMatchBeginPositionMF_01695314) - 1) AS ?thisPositionOn97) .
BIND(?thisPositionOn97 AS ?thisPositionOn98) .
BIND(?this AS ?pfs1t325) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfsb94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfse95) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn97, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01695a93')) AS ?annotation93) .
BIND(?this AS ?pfs92) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch330 faldo:location ?templateMotifSequenceMatchRegionQ8NTA6331 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8NTA6333 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8NTA6MF_01695326 .
?templateMotifSequenceMatchRegionQ8NTA6331 faldo:begin ?templateMotifSequenceMatchBeginQ8NTA6332 .
?templateMotifSequenceMatchBeginQ8NTA6332 faldo:position ?templateMotifSequenceMatchBeginPositionQ8NTA6327 ;
faldo:reference isoform:Q8NTA6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8NTA6333 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
?targetMotifMatch334 faldo:location ?targetMotifMatchRegionMatch335 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01695337 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8NTA6MF_01695328 .
?targetMotifMatchRegionMatch335 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01695336 .
?targetMotifMatchRegionMatchBeginMF_01695336 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01695329 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01695337 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8NTA6MF_01695326, 1, (STRLEN(?templateMotifCigarQ8NTA6MF_01695326) - STRLEN(REPLACE(?templateMotifCigarQ8NTA6MF_01695326, CONCAT('^(?:-*[^-]){', STR(((236 - ?templateMotifSequenceMatchBeginPositionQ8NTA6327) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1338) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695328, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695328) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695328, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1338), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695328, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695328) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695328, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1338), '}'), '')))), '[^-]', ''))) AS ?step2339) .
BIND(((?step2339 + ?targetMotifMatchRegionMatchBeginPositionMF_01695329) - 1) AS ?thisPositionOn104) .
BIND(?thisPositionOn104 AS ?thisPositionOn105) .
BIND(?this AS ?pfs1t340) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfsb101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfse102) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn104, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01695a100')) AS ?annotation100) .
BIND(?this AS ?pfs99) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch345 faldo:location ?templateMotifSequenceMatchRegionQ8NTA6346 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8NTA6348 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8NTA6MF_01695341 .
?templateMotifSequenceMatchRegionQ8NTA6346 faldo:begin ?templateMotifSequenceMatchBeginQ8NTA6347 .
?templateMotifSequenceMatchBeginQ8NTA6347 faldo:position ?templateMotifSequenceMatchBeginPositionQ8NTA6342 ;
faldo:reference isoform:Q8NTA6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8NTA6348 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
?targetMotifMatch349 faldo:location ?targetMotifMatchRegionMatch350 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01695352 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8NTA6MF_01695343 .
?targetMotifMatchRegionMatch350 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01695351 .
?targetMotifMatchRegionMatchBeginMF_01695351 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01695344 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01695352 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8NTA6MF_01695341, 1, (STRLEN(?templateMotifCigarQ8NTA6MF_01695341) - STRLEN(REPLACE(?templateMotifCigarQ8NTA6MF_01695341, CONCAT('^(?:-*[^-]){', STR(((294 - ?templateMotifSequenceMatchBeginPositionQ8NTA6342) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1353) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695343, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695343) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695343, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1353), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695343, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695343) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695343, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1353), '}'), '')))), '[^-]', ''))) AS ?step2354) .
BIND(((?step2354 + ?targetMotifMatchRegionMatchBeginPositionMF_01695344) - 1) AS ?thisPositionOn111) .
BIND(?thisPositionOn111 AS ?thisPositionOn112) .
BIND(?this AS ?pfs1t355) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfsb108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfse109) .
FILTER (REGEX('[RMQV]', SUBSTR(?thisSequenceValue, ?thisPositionOn111, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01695a107')) AS ?annotation107) .
BIND(?this AS ?pfs106) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch360 faldo:location ?templateMotifSequenceMatchRegionQ8NTA6361 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8NTA6363 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8NTA6MF_01695356 .
?templateMotifSequenceMatchRegionQ8NTA6361 faldo:begin ?templateMotifSequenceMatchBeginQ8NTA6362 .
?templateMotifSequenceMatchBeginQ8NTA6362 faldo:position ?templateMotifSequenceMatchBeginPositionQ8NTA6357 ;
faldo:reference isoform:Q8NTA6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8NTA6363 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
?targetMotifMatch364 faldo:location ?targetMotifMatchRegionMatch365 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01695367 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8NTA6MF_01695358 .
?targetMotifMatchRegionMatch365 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01695366 .
?targetMotifMatchRegionMatchBeginMF_01695366 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01695359 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01695367 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8NTA6MF_01695356, 1, (STRLEN(?templateMotifCigarQ8NTA6MF_01695356) - STRLEN(REPLACE(?templateMotifCigarQ8NTA6MF_01695356, CONCAT('^(?:-*[^-]){', STR(((316 - ?templateMotifSequenceMatchBeginPositionQ8NTA6357) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1368) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695358, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695358) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695358, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1368), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695358, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695358) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695358, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1368), '}'), '')))), '[^-]', ''))) AS ?step2369) .
BIND(((?step2369 + ?targetMotifMatchRegionMatchBeginPositionMF_01695359) - 1) AS ?thisPositionOn118) .
BIND(?thisPositionOn118 AS ?thisPositionOn119) .
BIND(?this AS ?pfs1t370) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn118))) AS ?pfsb115) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn119))) AS ?pfse116) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn118, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01695a114')) AS ?annotation114) .
BIND(?this AS ?pfs113) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch375 faldo:location ?templateMotifSequenceMatchRegionQ8NTA6376 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8NTA6378 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8NTA6MF_01695371 .
?templateMotifSequenceMatchRegionQ8NTA6376 faldo:begin ?templateMotifSequenceMatchBeginQ8NTA6377 .
?templateMotifSequenceMatchBeginQ8NTA6377 faldo:position ?templateMotifSequenceMatchBeginPositionQ8NTA6372 ;
faldo:reference isoform:Q8NTA6-1 .
?templateMotifSequenceProfileAlignmentOperationQ8NTA6378 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
?targetMotifMatch379 faldo:location ?targetMotifMatchRegionMatch380 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01695382 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8NTA6MF_01695373 .
?targetMotifMatchRegionMatch380 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01695381 .
?targetMotifMatchRegionMatchBeginMF_01695381 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01695374 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01695382 edam:has_input signature:MF_01695 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8NTA6MF_01695371, 1, (STRLEN(?templateMotifCigarQ8NTA6MF_01695371) - STRLEN(REPLACE(?templateMotifCigarQ8NTA6MF_01695371, CONCAT('^(?:-*[^-]){', STR(((324 - ?templateMotifSequenceMatchBeginPositionQ8NTA6372) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1383) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695373, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695373) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695373, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1383), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8NTA6MF_01695373, 1, (STRLEN(?targetMotifMatchCigarQ8NTA6MF_01695373) - STRLEN(REPLACE(?targetMotifMatchCigarQ8NTA6MF_01695373, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1383), '}'), '')))), '[^-]', ''))) AS ?step2384) .
BIND(((?step2384 + ?targetMotifMatchRegionMatchBeginPositionMF_01695374) - 1) AS ?thisPositionOn125) .
BIND(?thisPositionOn125 AS ?thisPositionOn126) .
BIND(?this AS ?pfs1t385) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn125))) AS ?pfsb122) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn126))) AS ?pfse123) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn125, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01695a121')) AS ?annotation121) .
BIND(?this AS ?pfs120) .
}
}
"xsd:string |
