| http://purl.uniprot.org/unirules/MF_01964#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:688442 up:source unirule:MF_01964 .
_:688443 up:source unirule:MF_01964 .
_:688444 up:source unirule:MF_01964 .
_:688445 up:source unirule:MF_01964 .
_:688446 up:source unirule:MF_01964 .
_:688447 up:source unirule:MF_01964 .
_:688448 up:source unirule:MF_01964 .
_:688449 up:source unirule:MF_01964 .
_:688450 up:source unirule:MF_01964 .
_:688451 up:source unirule:MF_01964 .
_:688452 up:source unirule:MF_01964 .
_:688453 up:source unirule:MF_01964 .
_:688454 up:source unirule:MF_01964 .
_:688455 up:source unirule:MF_01964 .
_:688456 up:source unirule:MF_01964 .
_:688457 up:source unirule:MF_01964 .
_:688458 up:source unirule:MF_01964 .
_:688459 up:source unirule:MF_01964 .
_:688460 up:source unirule:MF_01964 .
_:688461 up:source unirule:MF_01964 .
_:688462 up:source unirule:MF_01964 .
_:688463 up:source unirule:MF_01964 .
_:688464 up:source unirule:MF_01964 .
_:688465 up:source unirule:MF_01964 .
_:688466 up:source unirule:MF_01964 .
_:688467 up:source unirule:MF_01964 .
_:688468 up:source unirule:MF_01964 .
_:688469 up:source unirule:MF_01964 .
_:688470 up:source unirule:MF_01964 .
_:688471 up:source unirule:MF_01964 .
_:688472 up:source unirule:MF_01964 .
_:688473 up:source unirule:MF_01964 .
_:688474 up:source unirule:MF_01964 .
_:688475 up:source unirule:MF_01964 .
_:688476 up:source unirule:MF_01964 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0000166 ,
GO:0003938 ,
GO:0006177 ,
GO:0046872 ,
keyword:332 ,
keyword:479 ,
keyword:520 ,
keyword:560 ,
keyword:630 ,
keyword:658 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.1.1.205' ;
up:fullName "Inosine-5'-monophosphate dehydrogenase" ;
up:shortName 'IMP dehydrogenase' ,
'IMPD' ,
'IMPDH' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'guaB' .
?annotation2 a up:Function_Annotation ;
rdfs:comment "Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth." .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:29103 ;
rdf:type up:Cofactor_Annotation .
?annotation6 a up:Activity_Regulation_Annotation ;
rdfs:comment 'Mycophenolic acid (MPA) is a non-competitive inhibitor that prevents formation of the closed enzyme conformation by binding to the same site as the amobile flap. In contrast, mizoribine monophosphate (MZP) is a competitive inhibitor that induces the closed conformation. MPA is a potent inhibitor of mammalian IMPDHs but a poor inhibitor of the bacterial enzymes. MZP is a more potent inhibitor of bacterial IMPDH.' .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Purine metabolism; XMP biosynthesis via de novo pathway; XMP from IMP: step 1/1.' .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the IMPDH/GMPR family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:57540 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:57540 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:58053 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:58053 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:58053 .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Thioimidate intermediate' .
?pfsb47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb53 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf chebi:29103 .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
up:ligand ?ligand68 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?ligand68 rdfs:subClassOf chebi:29103 .
?pfs71 up:annotation ?annotation72 .
?annotation72 faldo:begin ?pfsb73 ;
faldo:end ?pfse74 ;
up:ligand ?ligand75 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?pfse74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?ligand75 rdfs:subClassOf chebi:29103 .
?pfs78 up:annotation ?annotation79 .
?annotation79 faldo:begin ?pfsb80 ;
faldo:end ?pfse81 ;
up:ligand ?ligand82 ;
rdf:type up:Binding_Site_Annotation .
?pfsb80 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?pfse81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?ligand82 rdfs:subClassOf chebi:29103 .
?pfs85 up:annotation ?annotation86 .
?annotation86 faldo:begin ?pfsb87 ;
faldo:end ?pfse88 ;
up:ligand ?ligand89 ;
rdf:type up:Binding_Site_Annotation .
?pfsb87 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?pfse88 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?ligand89 rdfs:subClassOf chebi:29103 .
?pfs92 up:annotation ?annotation93 .
?annotation93 faldo:begin ?pfsb94 ;
faldo:end ?pfse95 ;
up:ligand ?ligand96 ;
rdf:type up:Binding_Site_Annotation .
?pfsb94 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?pfse95 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?ligand96 rdfs:subClassOf chebi:29103 .
?pfs99 up:annotation ?annotation100 .
?annotation100 faldo:begin ?pfsb101 ;
faldo:end ?pfse102 ;
up:ligand ?ligand103 ;
rdf:type up:Binding_Site_Annotation .
?pfsb101 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
?pfse102 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?ligand103 rdfs:subClassOf chebi:58053 .
?pfs106 up:annotation ?annotation107 .
?annotation107 faldo:begin ?pfsb108 ;
faldo:end ?pfse109 ;
up:ligand ?ligand110 ;
rdf:type up:Binding_Site_Annotation .
?pfsb108 faldo:position ?thisPositionOn111 ;
rdf:type faldo:ExactPosition .
?pfse109 faldo:position ?thisPositionOn112 ;
rdf:type faldo:ExactPosition .
?ligand110 rdfs:subClassOf chebi:58053 .
?pfs113 up:annotation ?annotation114 .
?annotation114 faldo:begin ?pfsb115 ;
faldo:end ?pfse116 ;
up:ligand ?ligand117 ;
rdf:type up:Binding_Site_Annotation .
?pfsb115 faldo:position ?thisPositionOn118 ;
rdf:type faldo:ExactPosition .
?pfse116 faldo:position ?thisPositionOn119 ;
rdf:type faldo:ExactPosition .
?ligand117 rdfs:subClassOf chebi:57540 .
_:688477 a rdf:Statement ;
up:attribution _:688442 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:688478 a rdf:Statement ;
up:attribution _:688443 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:688479 a rdf:Statement ;
up:attribution _:688444 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:688480 a rdf:Statement ;
up:attribution _:688445 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:688481 a rdf:Statement ;
up:attribution _:688446 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:688482 a rdf:Statement ;
up:attribution _:688447 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:688483 a rdf:Statement ;
up:attribution _:688448 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:688484 a rdf:Statement ;
up:attribution _:688449 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:688485 a rdf:Statement ;
up:attribution _:688450 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:688486 a rdf:Statement ;
up:attribution _:688451 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:332 .
_:688487 a rdf:Statement ;
up:attribution _:688452 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:688488 a rdf:Statement ;
up:attribution _:688453 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:688489 a rdf:Statement ;
up:attribution _:688454 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:688490 a rdf:Statement ;
up:attribution _:688455 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:630 .
_:688491 a rdf:Statement ;
up:attribution _:688456 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:658 .
_:688492 a rdf:Statement ;
up:attribution _:688457 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003938 .
_:688493 a rdf:Statement ;
up:attribution _:688458 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046872 .
_:688494 a rdf:Statement ;
up:attribution _:688459 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000166 .
_:688495 a rdf:Statement ;
up:attribution _:688460 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006177 .
_:688496 a rdf:Statement ;
up:source unirule:MF_01964 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:688497 a rdf:Statement ;
up:attribution _:688461 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:688498 a rdf:Statement ;
up:source unirule:MF_01964 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:688499 a rdf:Statement ;
up:attribution _:688462 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:688500 a rdf:Statement ;
up:source unirule:MF_01964 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:688501 a rdf:Statement ;
up:attribution _:688463 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:688502 a rdf:Statement ;
up:source unirule:MF_01964 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:688503 a rdf:Statement ;
up:attribution _:688464 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:688504 a rdf:Statement ;
up:source unirule:MF_01964 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:688505 a rdf:Statement ;
up:attribution _:688465 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:688506 a rdf:Statement ;
up:source unirule:MF_01964 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:688507 a rdf:Statement ;
up:attribution _:688466 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:688508 a rdf:Statement ;
up:source unirule:MF_01964 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:688509 a rdf:Statement ;
up:attribution _:688467 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:688510 a rdf:Statement ;
up:source unirule:MF_01964 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:688511 a rdf:Statement ;
up:attribution _:688468 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:688512 a rdf:Statement ;
up:source unirule:MF_01964 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:688513 a rdf:Statement ;
up:attribution _:688469 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:688514 a rdf:Statement ;
up:source unirule:MF_01964 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:688515 a rdf:Statement ;
up:attribution _:688470 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:688516 a rdf:Statement ;
up:source unirule:MF_01964 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:688517 a rdf:Statement ;
up:attribution _:688471 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:688518 a rdf:Statement ;
up:source unirule:MF_01964 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
_:688519 a rdf:Statement ;
up:attribution _:688472 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
_:688520 a rdf:Statement ;
up:source unirule:MF_01964 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:688521 a rdf:Statement ;
up:attribution _:688473 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:688522 a rdf:Statement ;
up:source unirule:MF_01964 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
_:688523 a rdf:Statement ;
up:attribution _:688474 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
_:688524 a rdf:Statement ;
up:source unirule:MF_01964 ;
rdf:subject ?pfs106 ;
rdf:predicate up:annotation ;
rdf:object ?annotation107 .
_:688525 a rdf:Statement ;
up:attribution _:688475 ;
rdf:subject ?pfs106 ;
rdf:predicate up:annotation ;
rdf:object ?annotation107 .
_:688526 a rdf:Statement ;
up:source unirule:MF_01964 ;
rdf:subject ?pfs113 ;
rdf:predicate up:annotation ;
rdf:object ?annotation114 .
_:688527 a rdf:Statement ;
up:attribution _:688476 ;
rdf:subject ?pfs113 ;
rdf:predicate up:annotation ;
rdf:object ?annotation114 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01964
#Rule MF_01964 Created by:? on:2012-01-05 Modified by:Edouard de Castro on:2024-09-03
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01964 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01964 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
}
BIND(URI(CONCAT(STR(?this), '#MF_01964a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01964a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01964a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01964a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01964a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01964a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01964a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01964a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch124 faldo:location ?templateMotifSequenceMatchRegionP50097125 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP50097127 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50097MF_01964120 .
?templateMotifSequenceMatchRegionP50097125 faldo:begin ?templateMotifSequenceMatchBeginP50097126 .
?templateMotifSequenceMatchBeginP50097126 faldo:position ?templateMotifSequenceMatchBeginPositionP50097121 ;
faldo:reference isoform:P50097-1 .
?templateMotifSequenceProfileAlignmentOperationP50097127 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
?targetMotifMatch128 faldo:location ?targetMotifMatchRegionMatch129 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01964131 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50097MF_01964122 .
?targetMotifMatchRegionMatch129 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01964130 .
?targetMotifMatchRegionMatchBeginMF_01964130 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01964123 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01964131 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50097MF_01964120, 1, (STRLEN(?templateMotifCigarP50097MF_01964120) - STRLEN(REPLACE(?templateMotifCigarP50097MF_01964120, CONCAT('^(?:-*[^-]){', STR(((261 - ?templateMotifSequenceMatchBeginPositionP50097121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1132) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50097MF_01964122, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964122) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50097MF_01964122, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964122) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1132), '}'), '')))), '[^-]', ''))) AS ?step2133) .
BIND(((?step2133 + ?targetMotifMatchRegionMatchBeginPositionMF_01964123) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50097MF_01964120, 1, (STRLEN(?templateMotifCigarP50097MF_01964120) - STRLEN(REPLACE(?templateMotifCigarP50097MF_01964120, CONCAT('^(?:-*[^-]){', STR(((263 - ?templateMotifSequenceMatchBeginPositionP50097121) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50097MF_01964122, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964122) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50097MF_01964122, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964122) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964122, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) .
BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_01964123) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t136) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)) = 'DSS')) .
BIND(URI(CONCAT(STR(?this), '#MF_01964a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch141 faldo:location ?templateMotifSequenceMatchRegionP50097142 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP50097144 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50097MF_01964137 .
?templateMotifSequenceMatchRegionP50097142 faldo:begin ?templateMotifSequenceMatchBeginP50097143 .
?templateMotifSequenceMatchBeginP50097143 faldo:position ?templateMotifSequenceMatchBeginPositionP50097138 ;
faldo:reference isoform:P50097-1 .
?templateMotifSequenceProfileAlignmentOperationP50097144 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
?targetMotifMatch145 faldo:location ?targetMotifMatchRegionMatch146 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01964148 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50097MF_01964139 .
?targetMotifMatchRegionMatch146 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01964147 .
?targetMotifMatchRegionMatchBeginMF_01964147 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01964140 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01964148 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50097MF_01964137, 1, (STRLEN(?templateMotifCigarP50097MF_01964137) - STRLEN(REPLACE(?templateMotifCigarP50097MF_01964137, CONCAT('^(?:-*[^-]){', STR(((312 - ?templateMotifSequenceMatchBeginPositionP50097138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50097MF_01964139, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964139) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50097MF_01964139, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964139) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) .
BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_01964140) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50097MF_01964137, 1, (STRLEN(?templateMotifCigarP50097MF_01964137) - STRLEN(REPLACE(?templateMotifCigarP50097MF_01964137, CONCAT('^(?:-*[^-]){', STR(((314 - ?templateMotifSequenceMatchBeginPositionP50097138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50097MF_01964139, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964139) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50097MF_01964139, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964139) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) .
BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_01964140) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs2t153) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]G', SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01964a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionP50097159 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP50097161 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50097MF_01964154 .
?templateMotifSequenceMatchRegionP50097159 faldo:begin ?templateMotifSequenceMatchBeginP50097160 .
?templateMotifSequenceMatchBeginP50097160 faldo:position ?templateMotifSequenceMatchBeginPositionP50097155 ;
faldo:reference isoform:P50097-1 .
?templateMotifSequenceProfileAlignmentOperationP50097161 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01964165 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50097MF_01964156 .
?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01964164 .
?targetMotifMatchRegionMatchBeginMF_01964164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01964157 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01964165 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50097MF_01964154, 1, (STRLEN(?templateMotifCigarP50097MF_01964154) - STRLEN(REPLACE(?templateMotifCigarP50097MF_01964154, CONCAT('^(?:-*[^-]){', STR(((358 - ?templateMotifSequenceMatchBeginPositionP50097155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50097MF_01964156, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964156) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50097MF_01964156, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964156) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) .
BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_01964157) - 1) AS ?thisPositionOn29) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50097MF_01964154, 1, (STRLEN(?templateMotifCigarP50097MF_01964154) - STRLEN(REPLACE(?templateMotifCigarP50097MF_01964154, CONCAT('^(?:-*[^-]){', STR(((360 - ?templateMotifSequenceMatchBeginPositionP50097155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50097MF_01964156, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964156) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50097MF_01964156, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964156) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) .
BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_01964157) - 1) AS ?thisPositionOn30) .
BIND(?this AS ?pfs2t170) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, (?thisPositionOn30 - ?thisPositionOn29)) = 'DGG')) .
BIND(URI(CONCAT(STR(?this), '#MF_01964a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch175 faldo:location ?templateMotifSequenceMatchRegionP50097176 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP50097178 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50097MF_01964171 .
?templateMotifSequenceMatchRegionP50097176 faldo:begin ?templateMotifSequenceMatchBeginP50097177 .
?templateMotifSequenceMatchBeginP50097177 faldo:position ?templateMotifSequenceMatchBeginPositionP50097172 ;
faldo:reference isoform:P50097-1 .
?templateMotifSequenceProfileAlignmentOperationP50097178 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
?targetMotifMatch179 faldo:location ?targetMotifMatchRegionMatch180 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01964182 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50097MF_01964173 .
?targetMotifMatchRegionMatch180 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01964181 .
?targetMotifMatchRegionMatchBeginMF_01964181 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01964174 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01964182 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50097MF_01964171, 1, (STRLEN(?templateMotifCigarP50097MF_01964171) - STRLEN(REPLACE(?templateMotifCigarP50097MF_01964171, CONCAT('^(?:-*[^-]){', STR(((381 - ?templateMotifSequenceMatchBeginPositionP50097172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50097MF_01964173, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964173) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50097MF_01964173, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964173) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), '')))), '[^-]', ''))) AS ?step2184) .
BIND(((?step2184 + ?targetMotifMatchRegionMatchBeginPositionMF_01964174) - 1) AS ?thisPositionOn36) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50097MF_01964171, 1, (STRLEN(?templateMotifCigarP50097MF_01964171) - STRLEN(REPLACE(?templateMotifCigarP50097MF_01964171, CONCAT('^(?:-*[^-]){', STR(((382 - ?templateMotifSequenceMatchBeginPositionP50097172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50097MF_01964173, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964173) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50097MF_01964173, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964173) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) .
BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_01964174) - 1) AS ?thisPositionOn37) .
BIND(?this AS ?pfs2t187) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn36, (?thisPositionOn37 - ?thisPositionOn36)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01964a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch192 faldo:location ?templateMotifSequenceMatchRegionP50097193 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP50097195 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50097MF_01964188 .
?templateMotifSequenceMatchRegionP50097193 faldo:begin ?templateMotifSequenceMatchBeginP50097194 .
?templateMotifSequenceMatchBeginP50097194 faldo:position ?templateMotifSequenceMatchBeginPositionP50097189 ;
faldo:reference isoform:P50097-1 .
?templateMotifSequenceProfileAlignmentOperationP50097195 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
?targetMotifMatch196 faldo:location ?targetMotifMatchRegionMatch197 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01964199 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50097MF_01964190 .
?targetMotifMatchRegionMatch197 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01964198 .
?targetMotifMatchRegionMatchBeginMF_01964198 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01964191 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01964199 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50097MF_01964188, 1, (STRLEN(?templateMotifCigarP50097MF_01964188) - STRLEN(REPLACE(?templateMotifCigarP50097MF_01964188, CONCAT('^(?:-*[^-]){', STR(((405 - ?templateMotifSequenceMatchBeginPositionP50097189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1200) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50097MF_01964190, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964190) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50097MF_01964190, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964190) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), '')))), '[^-]', ''))) AS ?step2201) .
BIND(((?step2201 + ?targetMotifMatchRegionMatchBeginPositionMF_01964191) - 1) AS ?thisPositionOn43) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50097MF_01964188, 1, (STRLEN(?templateMotifCigarP50097MF_01964188) - STRLEN(REPLACE(?templateMotifCigarP50097MF_01964188, CONCAT('^(?:-*[^-]){', STR(((409 - ?templateMotifSequenceMatchBeginPositionP50097189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50097MF_01964190, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964190) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50097MF_01964190, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964190) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_01964191) - 1) AS ?thisPositionOn44) .
BIND(?this AS ?pfs2t204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER (REGEX('[YI][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn43, (?thisPositionOn44 - ?thisPositionOn43)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01964a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionP50097210 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP50097212 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50097MF_01964205 .
?templateMotifSequenceMatchRegionP50097210 faldo:begin ?templateMotifSequenceMatchBeginP50097211 .
?templateMotifSequenceMatchBeginP50097211 faldo:position ?templateMotifSequenceMatchBeginPositionP50097206 ;
faldo:reference isoform:P50097-1 .
?templateMotifSequenceProfileAlignmentOperationP50097212 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01964216 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50097MF_01964207 .
?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01964215 .
?targetMotifMatchRegionMatchBeginMF_01964215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01964208 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01964216 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50097MF_01964205, 1, (STRLEN(?templateMotifCigarP50097MF_01964205) - STRLEN(REPLACE(?templateMotifCigarP50097MF_01964205, CONCAT('^(?:-*[^-]){', STR(((319 - ?templateMotifSequenceMatchBeginPositionP50097206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50097MF_01964207, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964207) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50097MF_01964207, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964207) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) .
BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_01964208) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs2t219) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01964a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionP50097225 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP50097227 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50097MF_01964220 .
?templateMotifSequenceMatchRegionP50097225 faldo:begin ?templateMotifSequenceMatchBeginP50097226 .
?templateMotifSequenceMatchBeginP50097226 faldo:position ?templateMotifSequenceMatchBeginPositionP50097221 ;
faldo:reference isoform:P50097-1 .
?templateMotifSequenceProfileAlignmentOperationP50097227 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01964231 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50097MF_01964222 .
?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01964230 .
?targetMotifMatchRegionMatchBeginMF_01964230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01964223 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01964231 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50097MF_01964220, 1, (STRLEN(?templateMotifCigarP50097MF_01964220) - STRLEN(REPLACE(?templateMotifCigarP50097MF_01964220, CONCAT('^(?:-*[^-]){', STR(((418 - ?templateMotifSequenceMatchBeginPositionP50097221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50097MF_01964222, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964222) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50097MF_01964222, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964222) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) .
BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_01964223) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs2t234) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01964a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch239 faldo:location ?templateMotifSequenceMatchRegionP50097240 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP50097242 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50097MF_01964235 .
?templateMotifSequenceMatchRegionP50097240 faldo:begin ?templateMotifSequenceMatchBeginP50097241 .
?templateMotifSequenceMatchBeginP50097241 faldo:position ?templateMotifSequenceMatchBeginPositionP50097236 ;
faldo:reference isoform:P50097-1 .
?templateMotifSequenceProfileAlignmentOperationP50097242 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
?targetMotifMatch243 faldo:location ?targetMotifMatchRegionMatch244 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01964246 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50097MF_01964237 .
?targetMotifMatchRegionMatch244 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01964245 .
?targetMotifMatchRegionMatchBeginMF_01964245 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01964238 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01964246 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50097MF_01964235, 1, (STRLEN(?templateMotifCigarP50097MF_01964235) - STRLEN(REPLACE(?templateMotifCigarP50097MF_01964235, CONCAT('^(?:-*[^-]){', STR(((314 - ?templateMotifSequenceMatchBeginPositionP50097236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1247) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50097MF_01964237, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964237) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50097MF_01964237, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964237) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), '')))), '[^-]', ''))) AS ?step2248) .
BIND(((?step2248 + ?targetMotifMatchRegionMatchBeginPositionMF_01964238) - 1) AS ?thisPositionOn62) .
BIND(?thisPositionOn62 AS ?thisPositionOn63) .
BIND(?this AS ?pfs2t249) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01964a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch254 faldo:location ?templateMotifSequenceMatchRegionP50097255 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP50097257 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50097MF_01964250 .
?templateMotifSequenceMatchRegionP50097255 faldo:begin ?templateMotifSequenceMatchBeginP50097256 .
?templateMotifSequenceMatchBeginP50097256 faldo:position ?templateMotifSequenceMatchBeginPositionP50097251 ;
faldo:reference isoform:P50097-1 .
?templateMotifSequenceProfileAlignmentOperationP50097257 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
?targetMotifMatch258 faldo:location ?targetMotifMatchRegionMatch259 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01964261 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50097MF_01964252 .
?targetMotifMatchRegionMatch259 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01964260 .
?targetMotifMatchRegionMatchBeginMF_01964260 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01964253 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01964261 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50097MF_01964250, 1, (STRLEN(?templateMotifCigarP50097MF_01964250) - STRLEN(REPLACE(?templateMotifCigarP50097MF_01964250, CONCAT('^(?:-*[^-]){', STR(((316 - ?templateMotifSequenceMatchBeginPositionP50097251) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1262) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50097MF_01964252, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964252) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50097MF_01964252, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964252) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), '')))), '[^-]', ''))) AS ?step2263) .
BIND(((?step2263 + ?targetMotifMatchRegionMatchBeginPositionMF_01964253) - 1) AS ?thisPositionOn69) .
BIND(?thisPositionOn69 AS ?thisPositionOn70) .
BIND(?this AS ?pfs2t264) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01964a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch269 faldo:location ?templateMotifSequenceMatchRegionP50097270 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP50097272 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50097MF_01964265 .
?templateMotifSequenceMatchRegionP50097270 faldo:begin ?templateMotifSequenceMatchBeginP50097271 .
?templateMotifSequenceMatchBeginP50097271 faldo:position ?templateMotifSequenceMatchBeginPositionP50097266 ;
faldo:reference isoform:P50097-1 .
?templateMotifSequenceProfileAlignmentOperationP50097272 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
?targetMotifMatch273 faldo:location ?targetMotifMatchRegionMatch274 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01964276 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50097MF_01964267 .
?targetMotifMatchRegionMatch274 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01964275 .
?targetMotifMatchRegionMatchBeginMF_01964275 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01964268 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01964276 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50097MF_01964265, 1, (STRLEN(?templateMotifCigarP50097MF_01964265) - STRLEN(REPLACE(?templateMotifCigarP50097MF_01964265, CONCAT('^(?:-*[^-]){', STR(((319 - ?templateMotifSequenceMatchBeginPositionP50097266) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1277) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50097MF_01964267, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964267) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50097MF_01964267, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964267) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), '')))), '[^-]', ''))) AS ?step2278) .
BIND(((?step2278 + ?targetMotifMatchRegionMatchBeginPositionMF_01964268) - 1) AS ?thisPositionOn76) .
BIND(?thisPositionOn76 AS ?thisPositionOn77) .
BIND(?this AS ?pfs2t279) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse74) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01964a72')) AS ?annotation72) .
BIND(?this AS ?pfs71) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch284 faldo:location ?templateMotifSequenceMatchRegionP50097285 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP50097287 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50097MF_01964280 .
?templateMotifSequenceMatchRegionP50097285 faldo:begin ?templateMotifSequenceMatchBeginP50097286 .
?templateMotifSequenceMatchBeginP50097286 faldo:position ?templateMotifSequenceMatchBeginPositionP50097281 ;
faldo:reference isoform:P50097-1 .
?templateMotifSequenceProfileAlignmentOperationP50097287 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
?targetMotifMatch288 faldo:location ?targetMotifMatchRegionMatch289 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01964291 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50097MF_01964282 .
?targetMotifMatchRegionMatch289 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01964290 .
?targetMotifMatchRegionMatchBeginMF_01964290 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01964283 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01964291 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50097MF_01964280, 1, (STRLEN(?templateMotifCigarP50097MF_01964280) - STRLEN(REPLACE(?templateMotifCigarP50097MF_01964280, CONCAT('^(?:-*[^-]){', STR(((485 - ?templateMotifSequenceMatchBeginPositionP50097281) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1292) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50097MF_01964282, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964282) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50097MF_01964282, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964282) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), '')))), '[^-]', ''))) AS ?step2293) .
BIND(((?step2293 + ?targetMotifMatchRegionMatchBeginPositionMF_01964283) - 1) AS ?thisPositionOn83) .
BIND(?thisPositionOn83 AS ?thisPositionOn84) .
BIND(?this AS ?pfs2t294) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse81) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn83, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01964a79')) AS ?annotation79) .
BIND(?this AS ?pfs78) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch299 faldo:location ?templateMotifSequenceMatchRegionP50097300 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP50097302 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50097MF_01964295 .
?templateMotifSequenceMatchRegionP50097300 faldo:begin ?templateMotifSequenceMatchBeginP50097301 .
?templateMotifSequenceMatchBeginP50097301 faldo:position ?templateMotifSequenceMatchBeginPositionP50097296 ;
faldo:reference isoform:P50097-1 .
?templateMotifSequenceProfileAlignmentOperationP50097302 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
?targetMotifMatch303 faldo:location ?targetMotifMatchRegionMatch304 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01964306 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50097MF_01964297 .
?targetMotifMatchRegionMatch304 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01964305 .
?targetMotifMatchRegionMatchBeginMF_01964305 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01964298 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01964306 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50097MF_01964295, 1, (STRLEN(?templateMotifCigarP50097MF_01964295) - STRLEN(REPLACE(?templateMotifCigarP50097MF_01964295, CONCAT('^(?:-*[^-]){', STR(((486 - ?templateMotifSequenceMatchBeginPositionP50097296) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1307) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50097MF_01964297, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964297) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50097MF_01964297, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964297) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), '')))), '[^-]', ''))) AS ?step2308) .
BIND(((?step2308 + ?targetMotifMatchRegionMatchBeginPositionMF_01964298) - 1) AS ?thisPositionOn90) .
BIND(?thisPositionOn90 AS ?thisPositionOn91) .
BIND(?this AS ?pfs2t309) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfsb87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfse88) .
FILTER (REGEX('[GS]', SUBSTR(?thisSequenceValue, ?thisPositionOn90, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01964a86')) AS ?annotation86) .
BIND(?this AS ?pfs85) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch314 faldo:location ?templateMotifSequenceMatchRegionP50097315 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP50097317 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50097MF_01964310 .
?templateMotifSequenceMatchRegionP50097315 faldo:begin ?templateMotifSequenceMatchBeginP50097316 .
?templateMotifSequenceMatchBeginP50097316 faldo:position ?templateMotifSequenceMatchBeginPositionP50097311 ;
faldo:reference isoform:P50097-1 .
?templateMotifSequenceProfileAlignmentOperationP50097317 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
?targetMotifMatch318 faldo:location ?targetMotifMatchRegionMatch319 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01964321 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50097MF_01964312 .
?targetMotifMatchRegionMatch319 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01964320 .
?targetMotifMatchRegionMatchBeginMF_01964320 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01964313 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01964321 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50097MF_01964310, 1, (STRLEN(?templateMotifCigarP50097MF_01964310) - STRLEN(REPLACE(?templateMotifCigarP50097MF_01964310, CONCAT('^(?:-*[^-]){', STR(((487 - ?templateMotifSequenceMatchBeginPositionP50097311) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1322) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50097MF_01964312, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964312) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1322), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50097MF_01964312, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964312) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1322), '}'), '')))), '[^-]', ''))) AS ?step2323) .
BIND(((?step2323 + ?targetMotifMatchRegionMatchBeginPositionMF_01964313) - 1) AS ?thisPositionOn97) .
BIND(?thisPositionOn97 AS ?thisPositionOn98) .
BIND(?this AS ?pfs2t324) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfsb94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfse95) .
FILTER (REGEX('[GH]', SUBSTR(?thisSequenceValue, ?thisPositionOn97, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01964a93')) AS ?annotation93) .
BIND(?this AS ?pfs92) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch329 faldo:location ?templateMotifSequenceMatchRegionP50097330 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP50097332 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50097MF_01964325 .
?templateMotifSequenceMatchRegionP50097330 faldo:begin ?templateMotifSequenceMatchBeginP50097331 .
?templateMotifSequenceMatchBeginP50097331 faldo:position ?templateMotifSequenceMatchBeginPositionP50097326 ;
faldo:reference isoform:P50097-1 .
?templateMotifSequenceProfileAlignmentOperationP50097332 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
?targetMotifMatch333 faldo:location ?targetMotifMatchRegionMatch334 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01964336 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50097MF_01964327 .
?targetMotifMatchRegionMatch334 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01964335 .
?targetMotifMatchRegionMatchBeginMF_01964335 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01964328 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01964336 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50097MF_01964325, 1, (STRLEN(?templateMotifCigarP50097MF_01964325) - STRLEN(REPLACE(?templateMotifCigarP50097MF_01964325, CONCAT('^(?:-*[^-]){', STR(((317 - ?templateMotifSequenceMatchBeginPositionP50097326) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1337) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50097MF_01964327, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964327) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1337), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50097MF_01964327, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964327) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1337), '}'), '')))), '[^-]', ''))) AS ?step2338) .
BIND(((?step2338 + ?targetMotifMatchRegionMatchBeginPositionMF_01964328) - 1) AS ?thisPositionOn104) .
BIND(?thisPositionOn104 AS ?thisPositionOn105) .
BIND(?this AS ?pfs2t339) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfsb101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfse102) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn104, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01964a100')) AS ?annotation100) .
BIND(?this AS ?pfs99) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch344 faldo:location ?templateMotifSequenceMatchRegionP50097345 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP50097347 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50097MF_01964340 .
?templateMotifSequenceMatchRegionP50097345 faldo:begin ?templateMotifSequenceMatchBeginP50097346 .
?templateMotifSequenceMatchBeginP50097346 faldo:position ?templateMotifSequenceMatchBeginPositionP50097341 ;
faldo:reference isoform:P50097-1 .
?templateMotifSequenceProfileAlignmentOperationP50097347 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
?targetMotifMatch348 faldo:location ?targetMotifMatchRegionMatch349 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01964351 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50097MF_01964342 .
?targetMotifMatchRegionMatch349 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01964350 .
?targetMotifMatchRegionMatchBeginMF_01964350 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01964343 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01964351 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50097MF_01964340, 1, (STRLEN(?templateMotifCigarP50097MF_01964340) - STRLEN(REPLACE(?templateMotifCigarP50097MF_01964340, CONCAT('^(?:-*[^-]){', STR(((431 - ?templateMotifSequenceMatchBeginPositionP50097341) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1352) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50097MF_01964342, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964342) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964342, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1352), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50097MF_01964342, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964342) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964342, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1352), '}'), '')))), '[^-]', ''))) AS ?step2353) .
BIND(((?step2353 + ?targetMotifMatchRegionMatchBeginPositionMF_01964343) - 1) AS ?thisPositionOn111) .
BIND(?thisPositionOn111 AS ?thisPositionOn112) .
BIND(?this AS ?pfs2t354) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfsb108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfse109) .
FILTER (REGEX('[EQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn111, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01964a107')) AS ?annotation107) .
BIND(?this AS ?pfs106) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch359 faldo:location ?templateMotifSequenceMatchRegionP50097360 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP50097362 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP50097MF_01964355 .
?templateMotifSequenceMatchRegionP50097360 faldo:begin ?templateMotifSequenceMatchBeginP50097361 .
?templateMotifSequenceMatchBeginP50097361 faldo:position ?templateMotifSequenceMatchBeginPositionP50097356 ;
faldo:reference isoform:P50097-1 .
?templateMotifSequenceProfileAlignmentOperationP50097362 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
?targetMotifMatch363 faldo:location ?targetMotifMatchRegionMatch364 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01964366 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP50097MF_01964357 .
?targetMotifMatchRegionMatch364 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01964365 .
?targetMotifMatchRegionMatchBeginMF_01964365 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01964358 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01964366 edam:has_input signature:MF_01964 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP50097MF_01964355, 1, (STRLEN(?templateMotifCigarP50097MF_01964355) - STRLEN(REPLACE(?templateMotifCigarP50097MF_01964355, CONCAT('^(?:-*[^-]){', STR(((261 - ?templateMotifSequenceMatchBeginPositionP50097356) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1367) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP50097MF_01964357, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964357) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964357, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1367), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP50097MF_01964357, 1, (STRLEN(?targetMotifMatchCigarP50097MF_01964357) - STRLEN(REPLACE(?targetMotifMatchCigarP50097MF_01964357, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1367), '}'), '')))), '[^-]', ''))) AS ?step2368) .
BIND(((?step2368 + ?targetMotifMatchRegionMatchBeginPositionMF_01964358) - 1) AS ?thisPositionOn118) .
BIND(?thisPositionOn118 AS ?thisPositionOn119) .
BIND(?this AS ?pfs3t369) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn118))) AS ?pfsb115) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn119))) AS ?pfse116) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn118, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01964a114')) AS ?annotation114) .
BIND(?this AS ?pfs113) .
}
}
"xsd:string |
