| http://purl.uniprot.org/unirules/MF_01987#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:701566 up:source unirule:MF_01987 .
_:701567 up:source unirule:MF_01987 .
_:701568 up:source unirule:MF_01987 .
_:701569 up:source unirule:MF_01987 .
_:701570 up:source unirule:MF_01987 .
_:701571 up:source unirule:MF_01987 .
_:701572 up:source unirule:MF_01987 .
_:701573 up:source unirule:MF_01987 .
_:701574 up:source unirule:MF_01987 .
_:701575 up:source unirule:MF_01987 .
_:701576 up:source unirule:MF_01987 .
_:701577 up:source unirule:MF_01987 .
_:701578 up:source unirule:MF_01987 .
_:701579 up:source unirule:MF_01987 .
_:701580 up:source unirule:MF_01987 .
_:701581 up:source unirule:MF_01987 .
_:701582 up:source unirule:MF_01987 .
_:701583 up:source unirule:MF_01987 .
_:701584 up:source unirule:MF_01987 .
_:701585 up:source unirule:MF_01987 .
_:701586 up:source unirule:MF_01987 .
_:701587 up:source unirule:MF_01987 .
_:701588 up:source unirule:MF_01987 .
_:701589 up:source unirule:MF_01987 .
_:701590 up:source unirule:MF_01987 .
_:701591 up:source unirule:MF_01987 .
_:701592 up:source unirule:MF_01987 .
_:701593 up:source unirule:MF_01987 .
_:701594 up:source unirule:MF_01987 .
_:701595 up:source unirule:MF_01987 .
_:701596 up:source unirule:MF_01987 .
_:701597 up:source unirule:MF_01987 .
_:701598 up:source unirule:MF_01987 .
_:701599 up:source unirule:MF_01987 .
_:701600 up:source unirule:MF_01987 .
?this up:annotation ?annotation0 ,
?annotation1 ;
up:classifiedWith GO:0005524 ,
GO:0005737 ,
GO:0046835 ,
keyword:119 ,
keyword:418 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:630 ,
keyword:67 ,
keyword:808 ,
keyword:963 .
?annotation0 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation1 a up:Subcellular_Location_Annotation .
?annotation1li2 up:cellularComponent .
?case3 up:alternativeName ?name5 ;
up:recommendedName ?name4 .
?name4 up:ecName '2.7.1.229' ;
up:fullName 'Deoxyribokinase' ;
up:shortName 'dRK' ;
rdf:type up:Structured_Name .
?name5 up:fullName 'ATP:2-deoxy-D-ribose 5-phosphotransferase' ;
rdf:type up:Structured_Name .
?case6 up:classifiedWith GO:0004747 ,
GO:0019303 ;
up:recommendedName ?name7 .
?name7 up:ecName '2.7.1.15' ;
up:fullName 'Ribokinase' ;
up:shortName 'RK' ;
rdf:type up:Structured_Name .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for substrate specificity' .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:29103 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:29103 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:29103 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:30616 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:30616 .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf ?molecule54 .
?molecule54 rdfs:label 'substrate' .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf ?molecule62 .
?molecule62 rdfs:label 'substrate' .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb67 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfs71 up:annotation ?annotation72 .
?annotation72 faldo:begin ?pfsb73 ;
faldo:end ?pfse74 ;
up:ligand ?ligand75 ;
rdf:type up:Binding_Site_Annotation .
?pfsb73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?pfse74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?ligand75 rdfs:subClassOf chebi:29103 .
?pfs78 up:annotation ?annotation79 .
?annotation79 faldo:begin ?pfsb80 ;
faldo:end ?pfse81 ;
up:ligand ?ligand82 ;
rdf:type up:Binding_Site_Annotation .
?pfsb80 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?pfse81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?ligand82 rdfs:subClassOf chebi:29103 .
?pfs85 up:annotation ?annotation86 .
?annotation86 faldo:begin ?pfsb87 ;
faldo:end ?pfse88 ;
up:ligand ?ligand89 ;
rdf:type up:Binding_Site_Annotation .
?pfsb87 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?pfse88 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?ligand89 rdfs:subClassOf chebi:29103 .
?pfs92 up:annotation ?annotation93 .
?annotation93 faldo:begin ?pfsb94 ;
faldo:end ?pfse95 ;
up:ligand ?ligand96 ;
rdf:type up:Binding_Site_Annotation .
?pfsb94 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?pfse95 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?ligand96 rdfs:subClassOf ?molecule97 .
?molecule97 rdfs:label 'substrate' .
?pfs100 up:annotation ?annotation101 .
?annotation101 faldo:begin ?pfsb102 ;
faldo:end ?pfse103 ;
up:ligand ?ligand104 ;
rdf:type up:Binding_Site_Annotation .
?pfsb102 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?pfse103 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?ligand104 rdfs:subClassOf chebi:30616 .
?pfs107 up:annotation ?annotation108 .
?annotation108 faldo:begin ?pfsb109 ;
faldo:end ?pfse110 ;
up:ligand ?ligand111 ;
rdf:type up:Binding_Site_Annotation .
?pfsb109 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?pfse110 faldo:position ?thisPositionOn114 ;
rdf:type faldo:ExactPosition .
?ligand111 rdfs:subClassOf ?molecule112 .
?molecule112 rdfs:label 'substrate' .
?pfs115 up:annotation ?annotation116 .
?annotation116 faldo:begin ?pfsb117 ;
faldo:end ?pfse118 ;
up:ligand ?ligand119 ;
rdf:type up:Binding_Site_Annotation .
?pfsb117 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?pfse118 faldo:position ?thisPositionOn121 ;
rdf:type faldo:ExactPosition .
?ligand119 rdfs:subClassOf chebi:30616 .
_:701601 a rdf:Statement ;
up:attribution _:701566 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:701602 a rdf:Statement ;
up:attribution _:701567 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:701603 a rdf:Statement ;
up:attribution _:701568 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:701604 a rdf:Statement ;
up:attribution _:701569 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:119 .
_:701605 a rdf:Statement ;
up:attribution _:701570 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:701606 a rdf:Statement ;
up:attribution _:701571 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:701607 a rdf:Statement ;
up:attribution _:701572 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:701608 a rdf:Statement ;
up:attribution _:701573 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:701609 a rdf:Statement ;
up:attribution _:701574 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:701610 a rdf:Statement ;
up:attribution _:701575 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:701611 a rdf:Statement ;
up:attribution _:701576 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:630 .
_:701612 a rdf:Statement ;
up:attribution _:701577 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:701613 a rdf:Statement ;
up:attribution _:701578 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:701614 a rdf:Statement ;
up:attribution _:701579 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046835 .
_:701615 a rdf:Statement ;
up:attribution _:701580 ;
rdf:subject ?case3 ;
rdf:predicate up:recommendedName ;
rdf:object ?name4 .
_:701616 a rdf:Statement ;
up:attribution _:701581 ;
rdf:subject ?case3 ;
rdf:predicate up:alternativeName ;
rdf:object ?name5 .
_:701617 a rdf:Statement ;
up:attribution _:701582 ;
rdf:subject ?case6 ;
rdf:predicate up:recommendedName ;
rdf:object ?name7 .
_:701618 a rdf:Statement ;
up:attribution _:701583 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004747 .
_:701619 a rdf:Statement ;
up:attribution _:701584 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019303 .
_:701620 a rdf:Statement ;
up:source unirule:MF_01987 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:701621 a rdf:Statement ;
up:attribution _:701585 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:701622 a rdf:Statement ;
up:source unirule:MF_01987 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:701623 a rdf:Statement ;
up:attribution _:701586 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:701624 a rdf:Statement ;
up:source unirule:MF_01987 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:701625 a rdf:Statement ;
up:attribution _:701587 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:701626 a rdf:Statement ;
up:source unirule:MF_01987 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:701627 a rdf:Statement ;
up:attribution _:701588 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:701628 a rdf:Statement ;
up:source unirule:MF_01987 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:701629 a rdf:Statement ;
up:attribution _:701589 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:701630 a rdf:Statement ;
up:source unirule:MF_01987 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:701631 a rdf:Statement ;
up:attribution _:701590 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:701632 a rdf:Statement ;
up:source unirule:MF_01987 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:701633 a rdf:Statement ;
up:attribution _:701591 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:701634 a rdf:Statement ;
up:source unirule:MF_01987 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:701635 a rdf:Statement ;
up:attribution _:701592 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:701636 a rdf:Statement ;
up:source unirule:MF_01987 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:701637 a rdf:Statement ;
up:attribution _:701593 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:701638 a rdf:Statement ;
up:source unirule:MF_01987 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:701639 a rdf:Statement ;
up:attribution _:701594 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:701640 a rdf:Statement ;
up:source unirule:MF_01987 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:701641 a rdf:Statement ;
up:attribution _:701595 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:701642 a rdf:Statement ;
up:source unirule:MF_01987 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
_:701643 a rdf:Statement ;
up:attribution _:701596 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
_:701644 a rdf:Statement ;
up:source unirule:MF_01987 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:701645 a rdf:Statement ;
up:attribution _:701597 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:701646 a rdf:Statement ;
up:source unirule:MF_01987 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:701647 a rdf:Statement ;
up:attribution _:701598 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:701648 a rdf:Statement ;
up:source unirule:MF_01987 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:701649 a rdf:Statement ;
up:attribution _:701599 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:701650 a rdf:Statement ;
up:source unirule:MF_01987 ;
rdf:subject ?pfs115 ;
rdf:predicate up:annotation ;
rdf:object ?annotation116 .
_:701651 a rdf:Statement ;
up:attribution _:701600 ;
rdf:subject ?pfs115 ;
rdf:predicate up:annotation ;
rdf:object ?annotation116 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01987
#Rule MF_01987 Created by:? on:2016-02-29 Modified by:Edouard de Castro on:2024-09-03
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01987 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01987 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
}
BIND(URI(CONCAT(STR(?this), '#MF_01987a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_01987a1')) AS ?annotation1) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch126 faldo:location ?templateMotifSequenceMatchRegionP0DX97127 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0DX97129 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0DX97MF_01987122 .
?templateMotifSequenceMatchRegionP0DX97127 faldo:begin ?templateMotifSequenceMatchBeginP0DX97128 .
?templateMotifSequenceMatchBeginP0DX97128 faldo:position ?templateMotifSequenceMatchBeginPositionP0DX97123 ;
faldo:reference isoform:P0DX97-1 .
?templateMotifSequenceProfileAlignmentOperationP0DX97129 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
?targetMotifMatch130 faldo:location ?targetMotifMatchRegionMatch131 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01987133 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0DX97MF_01987124 .
?targetMotifMatchRegionMatch131 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01987132 .
?targetMotifMatchRegionMatchBeginMF_01987132 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01987125 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01987133 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagdeoxyribokinase) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0DX97MF_01987122, 1, (STRLEN(?templateMotifCigarP0DX97MF_01987122) - STRLEN(REPLACE(?templateMotifCigarP0DX97MF_01987122, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionP0DX97123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0DX97MF_01987124, 1, (STRLEN(?targetMotifMatchCigarP0DX97MF_01987124) - STRLEN(REPLACE(?targetMotifMatchCigarP0DX97MF_01987124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0DX97MF_01987124, 1, (STRLEN(?targetMotifMatchCigarP0DX97MF_01987124) - STRLEN(REPLACE(?targetMotifMatchCigarP0DX97MF_01987124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) .
BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_01987125) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t136) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_01987a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch141 faldo:location ?templateMotifSequenceMatchRegionP0A9J6142 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9J6144 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9J6MF_01987137 .
?templateMotifSequenceMatchRegionP0A9J6142 faldo:begin ?templateMotifSequenceMatchBeginP0A9J6143 .
?templateMotifSequenceMatchBeginP0A9J6143 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9J6138 ;
faldo:reference isoform:P0A9J6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9J6144 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
?targetMotifMatch145 faldo:location ?targetMotifMatchRegionMatch146 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01987148 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9J6MF_01987139 .
?targetMotifMatchRegionMatch146 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01987147 .
?targetMotifMatchRegionMatchBeginMF_01987147 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01987140 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01987148 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9J6MF_01987137, 1, (STRLEN(?templateMotifCigarP0A9J6MF_01987137) - STRLEN(REPLACE(?templateMotifCigarP0A9J6MF_01987137, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionP0A9J6138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987139, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987139) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987139, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987139) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) .
BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_01987140) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs2t151) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER (BOUND(?thisPositionOn19)) .
BIND(URI(CONCAT(STR(?this), '#MF_01987a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch156 faldo:location ?templateMotifSequenceMatchRegionP0A9J6157 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9J6159 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9J6MF_01987152 .
?templateMotifSequenceMatchRegionP0A9J6157 faldo:begin ?templateMotifSequenceMatchBeginP0A9J6158 .
?templateMotifSequenceMatchBeginP0A9J6158 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9J6153 ;
faldo:reference isoform:P0A9J6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9J6159 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
?targetMotifMatch160 faldo:location ?targetMotifMatchRegionMatch161 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01987163 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9J6MF_01987154 .
?targetMotifMatchRegionMatch161 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01987162 .
?targetMotifMatchRegionMatchBeginMF_01987162 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01987155 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01987163 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9J6MF_01987152, 1, (STRLEN(?templateMotifCigarP0A9J6MF_01987152) - STRLEN(REPLACE(?templateMotifCigarP0A9J6MF_01987152, CONCAT('^(?:-*[^-]){', STR(((285 - ?templateMotifSequenceMatchBeginPositionP0A9J6153) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987154, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987154) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987154, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987154) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987154, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) .
BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_01987155) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs2t166) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER (BOUND(?thisPositionOn26)) .
BIND(URI(CONCAT(STR(?this), '#MF_01987a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch171 faldo:location ?templateMotifSequenceMatchRegionP0A9J6172 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9J6174 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9J6MF_01987167 .
?templateMotifSequenceMatchRegionP0A9J6172 faldo:begin ?templateMotifSequenceMatchBeginP0A9J6173 .
?templateMotifSequenceMatchBeginP0A9J6173 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9J6168 ;
faldo:reference isoform:P0A9J6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9J6174 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
?targetMotifMatch175 faldo:location ?targetMotifMatchRegionMatch176 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01987178 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9J6MF_01987169 .
?targetMotifMatchRegionMatch176 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01987177 .
?targetMotifMatchRegionMatchBeginMF_01987177 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01987170 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01987178 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9J6MF_01987167, 1, (STRLEN(?templateMotifCigarP0A9J6MF_01987167) - STRLEN(REPLACE(?templateMotifCigarP0A9J6MF_01987167, CONCAT('^(?:-*[^-]){', STR(((288 - ?templateMotifSequenceMatchBeginPositionP0A9J6168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987169, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987169) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987169, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987169) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), '')))), '[^-]', ''))) AS ?step2180) .
BIND(((?step2180 + ?targetMotifMatchRegionMatchBeginPositionMF_01987170) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs2t181) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER (BOUND(?thisPositionOn33)) .
BIND(URI(CONCAT(STR(?this), '#MF_01987a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch186 faldo:location ?templateMotifSequenceMatchRegionP0A9J6187 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9J6189 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9J6MF_01987182 .
?templateMotifSequenceMatchRegionP0A9J6187 faldo:begin ?templateMotifSequenceMatchBeginP0A9J6188 .
?templateMotifSequenceMatchBeginP0A9J6188 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9J6183 ;
faldo:reference isoform:P0A9J6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9J6189 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
?targetMotifMatch190 faldo:location ?targetMotifMatchRegionMatch191 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01987193 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9J6MF_01987184 .
?targetMotifMatchRegionMatch191 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01987192 .
?targetMotifMatchRegionMatchBeginMF_01987192 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01987185 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01987193 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9J6MF_01987182, 1, (STRLEN(?templateMotifCigarP0A9J6MF_01987182) - STRLEN(REPLACE(?templateMotifCigarP0A9J6MF_01987182, CONCAT('^(?:-*[^-]){', STR(((223 - ?templateMotifSequenceMatchBeginPositionP0A9J6183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987184, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987184) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987184, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987184) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), '')))), '[^-]', ''))) AS ?step2195) .
BIND(((?step2195 + ?targetMotifMatchRegionMatchBeginPositionMF_01987185) - 1) AS ?thisPositionOn40) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9J6MF_01987182, 1, (STRLEN(?templateMotifCigarP0A9J6MF_01987182) - STRLEN(REPLACE(?templateMotifCigarP0A9J6MF_01987182, CONCAT('^(?:-*[^-]){', STR(((228 - ?templateMotifSequenceMatchBeginPositionP0A9J6183) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987184, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987184) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987184, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987184) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987184, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), '')))), '[^-]', ''))) AS ?step2197) .
BIND(((?step2197 + ?targetMotifMatchRegionMatchBeginPositionMF_01987185) - 1) AS ?thisPositionOn41) .
BIND(?this AS ?pfs2t198) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)G[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)G', SUBSTR(?thisSequenceValue, ?thisPositionOn40, (?thisPositionOn41 - ?thisPositionOn40)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01987a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch203 faldo:location ?templateMotifSequenceMatchRegionP0A9J6204 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9J6206 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9J6MF_01987199 .
?templateMotifSequenceMatchRegionP0A9J6204 faldo:begin ?templateMotifSequenceMatchBeginP0A9J6205 .
?templateMotifSequenceMatchBeginP0A9J6205 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9J6200 ;
faldo:reference isoform:P0A9J6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9J6206 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
?targetMotifMatch207 faldo:location ?targetMotifMatchRegionMatch208 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01987210 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9J6MF_01987201 .
?targetMotifMatchRegionMatch208 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01987209 .
?targetMotifMatchRegionMatchBeginMF_01987209 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01987202 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01987210 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9J6MF_01987199, 1, (STRLEN(?templateMotifCigarP0A9J6MF_01987199) - STRLEN(REPLACE(?templateMotifCigarP0A9J6MF_01987199, CONCAT('^(?:-*[^-]){', STR(((254 - ?templateMotifSequenceMatchBeginPositionP0A9J6200) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1211) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987201, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987201) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987201, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987201) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), '')))), '[^-]', ''))) AS ?step2212) .
BIND(((?step2212 + ?targetMotifMatchRegionMatchBeginPositionMF_01987202) - 1) AS ?thisPositionOn47) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9J6MF_01987199, 1, (STRLEN(?templateMotifCigarP0A9J6MF_01987199) - STRLEN(REPLACE(?templateMotifCigarP0A9J6MF_01987199, CONCAT('^(?:-*[^-]){', STR(((255 - ?templateMotifSequenceMatchBeginPositionP0A9J6200) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1213) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987201, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987201) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987201, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987201) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), '')))), '[^-]', ''))) AS ?step2214) .
BIND(((?step2214 + ?targetMotifMatchRegionMatchBeginPositionMF_01987202) - 1) AS ?thisPositionOn48) .
BIND(?this AS ?pfs2t215) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, (?thisPositionOn48 - ?thisPositionOn47)) = 'GD')) .
BIND(URI(CONCAT(STR(?this), '#MF_01987a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch220 faldo:location ?templateMotifSequenceMatchRegionP0A9J6221 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9J6223 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9J6MF_01987216 .
?templateMotifSequenceMatchRegionP0A9J6221 faldo:begin ?templateMotifSequenceMatchBeginP0A9J6222 .
?templateMotifSequenceMatchBeginP0A9J6222 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9J6217 ;
faldo:reference isoform:P0A9J6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9J6223 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
?targetMotifMatch224 faldo:location ?targetMotifMatchRegionMatch225 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01987227 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9J6MF_01987218 .
?targetMotifMatchRegionMatch225 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01987226 .
?targetMotifMatchRegionMatchBeginMF_01987226 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01987219 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01987227 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9J6MF_01987216, 1, (STRLEN(?templateMotifCigarP0A9J6MF_01987216) - STRLEN(REPLACE(?templateMotifCigarP0A9J6MF_01987216, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionP0A9J6217) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1228) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987218, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987218) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1228), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987218, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987218) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1228), '}'), '')))), '[^-]', ''))) AS ?step2229) .
BIND(((?step2229 + ?targetMotifMatchRegionMatchBeginPositionMF_01987219) - 1) AS ?thisPositionOn55) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9J6MF_01987216, 1, (STRLEN(?templateMotifCigarP0A9J6MF_01987216) - STRLEN(REPLACE(?templateMotifCigarP0A9J6MF_01987216, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionP0A9J6217) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1230) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987218, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987218) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987218, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987218) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), '')))), '[^-]', ''))) AS ?step2231) .
BIND(((?step2231 + ?targetMotifMatchRegionMatchBeginPositionMF_01987219) - 1) AS ?thisPositionOn56) .
BIND(?this AS ?pfs2t232) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse52) .
FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)D', SUBSTR(?thisSequenceValue, ?thisPositionOn55, (?thisPositionOn56 - ?thisPositionOn55)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01987a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch237 faldo:location ?templateMotifSequenceMatchRegionP0A9J6238 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9J6240 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9J6MF_01987233 .
?templateMotifSequenceMatchRegionP0A9J6238 faldo:begin ?templateMotifSequenceMatchBeginP0A9J6239 .
?templateMotifSequenceMatchBeginP0A9J6239 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9J6234 ;
faldo:reference isoform:P0A9J6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9J6240 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
?targetMotifMatch241 faldo:location ?targetMotifMatchRegionMatch242 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01987244 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9J6MF_01987235 .
?targetMotifMatchRegionMatch242 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01987243 .
?targetMotifMatchRegionMatchBeginMF_01987243 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01987236 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01987244 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9J6MF_01987233, 1, (STRLEN(?templateMotifCigarP0A9J6MF_01987233) - STRLEN(REPLACE(?templateMotifCigarP0A9J6MF_01987233, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionP0A9J6234) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1245) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987235, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987235) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1245), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987235, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987235) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1245), '}'), '')))), '[^-]', ''))) AS ?step2246) .
BIND(((?step2246 + ?targetMotifMatchRegionMatchBeginPositionMF_01987236) - 1) AS ?thisPositionOn63) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9J6MF_01987233, 1, (STRLEN(?templateMotifCigarP0A9J6MF_01987233) - STRLEN(REPLACE(?templateMotifCigarP0A9J6MF_01987233, CONCAT('^(?:-*[^-]){', STR(((46 - ?templateMotifSequenceMatchBeginPositionP0A9J6234) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1247) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987235, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987235) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987235, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987235) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), '')))), '[^-]', ''))) AS ?step2248) .
BIND(((?step2248 + ?targetMotifMatchRegionMatchBeginPositionMF_01987236) - 1) AS ?thisPositionOn64) .
BIND(?this AS ?pfs2t249) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse60) .
FILTER (REGEX('G[KR][GAS][ARNDCQEGHILKMFPSTWYVBZJUOX][NR]', SUBSTR(?thisSequenceValue, ?thisPositionOn63, (?thisPositionOn64 - ?thisPositionOn63)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01987a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch254 faldo:location ?templateMotifSequenceMatchRegionP0A9J6255 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9J6257 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9J6MF_01987250 .
?templateMotifSequenceMatchRegionP0A9J6255 faldo:begin ?templateMotifSequenceMatchBeginP0A9J6256 .
?templateMotifSequenceMatchBeginP0A9J6256 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9J6251 ;
faldo:reference isoform:P0A9J6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9J6257 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
?targetMotifMatch258 faldo:location ?targetMotifMatchRegionMatch259 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01987261 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9J6MF_01987252 .
?targetMotifMatchRegionMatch259 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01987260 .
?targetMotifMatchRegionMatchBeginMF_01987260 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01987253 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01987261 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9J6MF_01987250, 1, (STRLEN(?templateMotifCigarP0A9J6MF_01987250) - STRLEN(REPLACE(?templateMotifCigarP0A9J6MF_01987250, CONCAT('^(?:-*[^-]){', STR(((255 - ?templateMotifSequenceMatchBeginPositionP0A9J6251) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1262) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987252, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987252) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987252, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987252) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), '')))), '[^-]', ''))) AS ?step2263) .
BIND(((?step2263 + ?targetMotifMatchRegionMatchBeginPositionMF_01987253) - 1) AS ?thisPositionOn69) .
BIND(?thisPositionOn69 AS ?thisPositionOn70) .
BIND(?this AS ?pfs2t264) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse68) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01987a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch269 faldo:location ?templateMotifSequenceMatchRegionP0A9J6270 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9J6272 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9J6MF_01987265 .
?templateMotifSequenceMatchRegionP0A9J6270 faldo:begin ?templateMotifSequenceMatchBeginP0A9J6271 .
?templateMotifSequenceMatchBeginP0A9J6271 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9J6266 ;
faldo:reference isoform:P0A9J6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9J6272 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
?targetMotifMatch273 faldo:location ?targetMotifMatchRegionMatch274 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01987276 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9J6MF_01987267 .
?targetMotifMatchRegionMatch274 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01987275 .
?targetMotifMatchRegionMatchBeginMF_01987275 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01987268 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01987276 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9J6MF_01987265, 1, (STRLEN(?templateMotifCigarP0A9J6MF_01987265) - STRLEN(REPLACE(?templateMotifCigarP0A9J6MF_01987265, CONCAT('^(?:-*[^-]){', STR(((249 - ?templateMotifSequenceMatchBeginPositionP0A9J6266) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1277) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987267, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987267) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987267, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987267) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), '')))), '[^-]', ''))) AS ?step2278) .
BIND(((?step2278 + ?targetMotifMatchRegionMatchBeginPositionMF_01987268) - 1) AS ?thisPositionOn76) .
BIND(?thisPositionOn76 AS ?thisPositionOn77) .
BIND(?this AS ?pfs2t279) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse74) .
FILTER (REGEX('[DN]', SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01987a72')) AS ?annotation72) .
BIND(?this AS ?pfs71) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch284 faldo:location ?templateMotifSequenceMatchRegionP0A9J6285 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9J6287 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9J6MF_01987280 .
?templateMotifSequenceMatchRegionP0A9J6285 faldo:begin ?templateMotifSequenceMatchBeginP0A9J6286 .
?templateMotifSequenceMatchBeginP0A9J6286 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9J6281 ;
faldo:reference isoform:P0A9J6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9J6287 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
?targetMotifMatch288 faldo:location ?targetMotifMatchRegionMatch289 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01987291 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9J6MF_01987282 .
?targetMotifMatchRegionMatch289 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01987290 .
?targetMotifMatchRegionMatchBeginMF_01987290 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01987283 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01987291 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9J6MF_01987280, 1, (STRLEN(?templateMotifCigarP0A9J6MF_01987280) - STRLEN(REPLACE(?templateMotifCigarP0A9J6MF_01987280, CONCAT('^(?:-*[^-]){', STR(((290 - ?templateMotifSequenceMatchBeginPositionP0A9J6281) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1292) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987282, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987282) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987282, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987282) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), '')))), '[^-]', ''))) AS ?step2293) .
BIND(((?step2293 + ?targetMotifMatchRegionMatchBeginPositionMF_01987283) - 1) AS ?thisPositionOn83) .
BIND(?thisPositionOn83 AS ?thisPositionOn84) .
BIND(?this AS ?pfs2t294) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse81) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn83, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01987a79')) AS ?annotation79) .
BIND(?this AS ?pfs78) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch299 faldo:location ?templateMotifSequenceMatchRegionP0A9J6300 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9J6302 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9J6MF_01987295 .
?templateMotifSequenceMatchRegionP0A9J6300 faldo:begin ?templateMotifSequenceMatchBeginP0A9J6301 .
?templateMotifSequenceMatchBeginP0A9J6301 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9J6296 ;
faldo:reference isoform:P0A9J6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9J6302 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
?targetMotifMatch303 faldo:location ?targetMotifMatchRegionMatch304 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01987306 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9J6MF_01987297 .
?targetMotifMatchRegionMatch304 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01987305 .
?targetMotifMatchRegionMatchBeginMF_01987305 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01987298 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01987306 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9J6MF_01987295, 1, (STRLEN(?templateMotifCigarP0A9J6MF_01987295) - STRLEN(REPLACE(?templateMotifCigarP0A9J6MF_01987295, CONCAT('^(?:-*[^-]){', STR(((294 - ?templateMotifSequenceMatchBeginPositionP0A9J6296) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1307) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987297, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987297) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987297, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987297) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), '')))), '[^-]', ''))) AS ?step2308) .
BIND(((?step2308 + ?targetMotifMatchRegionMatchBeginPositionMF_01987298) - 1) AS ?thisPositionOn90) .
BIND(?thisPositionOn90 AS ?thisPositionOn91) .
BIND(?this AS ?pfs2t309) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfsb87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfse88) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn90, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01987a86')) AS ?annotation86) .
BIND(?this AS ?pfs85) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch314 faldo:location ?templateMotifSequenceMatchRegionP0A9J6315 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9J6317 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9J6MF_01987310 .
?templateMotifSequenceMatchRegionP0A9J6315 faldo:begin ?templateMotifSequenceMatchBeginP0A9J6316 .
?templateMotifSequenceMatchBeginP0A9J6316 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9J6311 ;
faldo:reference isoform:P0A9J6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9J6317 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
?targetMotifMatch318 faldo:location ?targetMotifMatchRegionMatch319 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01987321 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9J6MF_01987312 .
?targetMotifMatchRegionMatch319 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01987320 .
?targetMotifMatchRegionMatchBeginMF_01987320 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01987313 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01987321 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9J6MF_01987310, 1, (STRLEN(?templateMotifCigarP0A9J6MF_01987310) - STRLEN(REPLACE(?templateMotifCigarP0A9J6MF_01987310, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionP0A9J6311) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1322) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987312, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987312) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1322), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987312, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987312) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1322), '}'), '')))), '[^-]', ''))) AS ?step2323) .
BIND(((?step2323 + ?targetMotifMatchRegionMatchBeginPositionMF_01987313) - 1) AS ?thisPositionOn98) .
BIND(?thisPositionOn98 AS ?thisPositionOn99) .
BIND(?this AS ?pfs2t324) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfsb94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfse95) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn98, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01987a93')) AS ?annotation93) .
BIND(?this AS ?pfs92) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch329 faldo:location ?templateMotifSequenceMatchRegionP0A9J6330 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9J6332 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9J6MF_01987325 .
?templateMotifSequenceMatchRegionP0A9J6330 faldo:begin ?templateMotifSequenceMatchBeginP0A9J6331 .
?templateMotifSequenceMatchBeginP0A9J6331 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9J6326 ;
faldo:reference isoform:P0A9J6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9J6332 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
?targetMotifMatch333 faldo:location ?targetMotifMatchRegionMatch334 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01987336 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9J6MF_01987327 .
?targetMotifMatchRegionMatch334 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01987335 .
?targetMotifMatchRegionMatchBeginMF_01987335 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01987328 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01987336 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9J6MF_01987325, 1, (STRLEN(?templateMotifCigarP0A9J6MF_01987325) - STRLEN(REPLACE(?templateMotifCigarP0A9J6MF_01987325, CONCAT('^(?:-*[^-]){', STR(((187 - ?templateMotifSequenceMatchBeginPositionP0A9J6326) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1337) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987327, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987327) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1337), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987327, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987327) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1337), '}'), '')))), '[^-]', ''))) AS ?step2338) .
BIND(((?step2338 + ?targetMotifMatchRegionMatchBeginPositionMF_01987328) - 1) AS ?thisPositionOn105) .
BIND(?thisPositionOn105 AS ?thisPositionOn106) .
BIND(?this AS ?pfs2t339) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse103) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01987a101')) AS ?annotation101) .
BIND(?this AS ?pfs100) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch344 faldo:location ?templateMotifSequenceMatchRegionP0A9J6345 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9J6347 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9J6MF_01987340 .
?templateMotifSequenceMatchRegionP0A9J6345 faldo:begin ?templateMotifSequenceMatchBeginP0A9J6346 .
?templateMotifSequenceMatchBeginP0A9J6346 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9J6341 ;
faldo:reference isoform:P0A9J6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9J6347 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
?targetMotifMatch348 faldo:location ?targetMotifMatchRegionMatch349 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01987351 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9J6MF_01987342 .
?targetMotifMatchRegionMatch349 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01987350 .
?targetMotifMatchRegionMatchBeginMF_01987350 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01987343 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01987351 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9J6MF_01987340, 1, (STRLEN(?templateMotifCigarP0A9J6MF_01987340) - STRLEN(REPLACE(?templateMotifCigarP0A9J6MF_01987340, CONCAT('^(?:-*[^-]){', STR(((255 - ?templateMotifSequenceMatchBeginPositionP0A9J6341) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1352) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987342, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987342) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987342, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1352), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987342, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987342) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987342, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1352), '}'), '')))), '[^-]', ''))) AS ?step2353) .
BIND(((?step2353 + ?targetMotifMatchRegionMatchBeginPositionMF_01987343) - 1) AS ?thisPositionOn113) .
BIND(?thisPositionOn113 AS ?thisPositionOn114) .
BIND(?this AS ?pfs2t354) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfsb109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfse110) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn113, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01987a108')) AS ?annotation108) .
BIND(?this AS ?pfs107) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch359 faldo:location ?templateMotifSequenceMatchRegionP0A9J6360 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9J6362 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9J6MF_01987355 .
?templateMotifSequenceMatchRegionP0A9J6360 faldo:begin ?templateMotifSequenceMatchBeginP0A9J6361 .
?templateMotifSequenceMatchBeginP0A9J6361 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9J6356 ;
faldo:reference isoform:P0A9J6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9J6362 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
?targetMotifMatch363 faldo:location ?targetMotifMatchRegionMatch364 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01987366 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9J6MF_01987357 .
?targetMotifMatchRegionMatch364 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01987365 .
?targetMotifMatchRegionMatchBeginMF_01987365 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01987358 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01987366 edam:has_input signature:MF_01987 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9J6MF_01987355, 1, (STRLEN(?templateMotifCigarP0A9J6MF_01987355) - STRLEN(REPLACE(?templateMotifCigarP0A9J6MF_01987355, CONCAT('^(?:-*[^-]){', STR(((279 - ?templateMotifSequenceMatchBeginPositionP0A9J6356) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1367) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987357, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987357) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987357, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1367), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9J6MF_01987357, 1, (STRLEN(?targetMotifMatchCigarP0A9J6MF_01987357) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9J6MF_01987357, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1367), '}'), '')))), '[^-]', ''))) AS ?step2368) .
BIND(((?step2368 + ?targetMotifMatchRegionMatchBeginPositionMF_01987358) - 1) AS ?thisPositionOn120) .
BIND(?thisPositionOn120 AS ?thisPositionOn121) .
BIND(?this AS ?pfs2t369) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfsb117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfse118) .
FILTER (REGEX('[HN]', SUBSTR(?thisSequenceValue, ?thisPositionOn120, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01987a116')) AS ?annotation116) .
BIND(?this AS ?pfs115) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag370) .
BIND(URI(CONCAT(STR(?this), '#MF_01987a4')) AS ?name4) .
BIND(URI(CONCAT(STR(?this), '#MF_01987a5')) AS ?name5) .
}
BIND(IF(BOUND(?tagdeoxyribokinase), ?caseWithTag370, ?UNBOUND_VARIABLE) AS ?case3) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag371) .
BIND(URI(CONCAT(STR(?this), '#MF_01987a7')) AS ?name7) .
}
BIND(IF(BOUND(?tagdeoxyribokinase), ?caseWithTag371, ?UNBOUND_VARIABLE) AS ?case6) .
}
"xsd:string |
