| http://purl.uniprot.org/unirules/MF_02075#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:734784 up:source unirule:MF_02075 .
_:734785 up:source unirule:MF_02075 .
_:734786 up:source unirule:MF_02075 .
_:734787 up:source unirule:MF_02075 .
_:734788 up:source unirule:MF_02075 .
_:734789 up:source unirule:MF_02075 .
_:734790 up:source unirule:MF_02075 .
_:734791 up:source unirule:MF_02075 .
_:734792 up:source unirule:MF_02075 .
_:734793 up:source unirule:MF_02075 .
_:734794 up:source unirule:MF_02075 .
_:734795 up:source unirule:MF_02075 .
_:734796 up:source unirule:MF_02075 .
_:734797 up:source unirule:MF_02075 .
_:734798 up:source unirule:MF_02075 .
_:734799 up:source unirule:MF_02075 .
_:734800 up:source unirule:MF_02075 .
_:734801 up:source unirule:MF_02075 .
_:734802 up:source unirule:MF_02075 .
_:734803 up:source unirule:MF_02075 .
_:734804 up:source unirule:MF_02075 .
_:734805 up:source unirule:MF_02075 .
_:734806 up:source unirule:MF_02075 .
_:734807 up:source unirule:MF_02075 .
_:734808 up:source unirule:MF_02075 .
_:734809 up:source unirule:MF_02075 .
_:734810 up:source unirule:MF_02075 .
_:734811 up:source unirule:MF_02075 .
_:734812 up:source unirule:MF_02075 .
_:734813 up:source unirule:MF_02075 .
_:734814 up:source unirule:MF_02075 .
_:734815 up:source unirule:MF_02075 .
_:734816 up:source unirule:MF_02075 .
_:734817 up:source unirule:MF_02075 .
_:734818 up:source unirule:MF_02075 .
_:734819 up:source unirule:MF_02075 .
_:734820 up:source unirule:MF_02075 .
_:734821 up:source unirule:MF_02075 .
_:734822 up:source unirule:MF_02075 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ;
up:classifiedWith GO:0004815 ,
GO:0005524 ,
GO:0005737 ,
GO:0006422 ,
keyword:30 ,
keyword:436 ,
keyword:547 ,
keyword:648 ,
keyword:67 ,
keyword:963 .
?gene0 skos:prefLabel 'aspS' .
?annotation1 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation2 a up:Subcellular_Location_Annotation .
?annotation2li3 up:cellularComponent .
?annotation4 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class-II aminoacyl-tRNA synthetase family. Type 2 subfamily.' .
?case5 up:alternativeName ?name7 ,
?name8 ;
up:recommendedName ?name6 .
?name6 up:ecName '6.1.1.12' ;
up:fullName 'Aspartate--tRNA(Asp) ligase' ;
rdf:type up:Structured_Name .
?name7 up:fullName 'Aspartyl-tRNA synthetase' ;
up:shortName 'AspRS' ;
rdf:type up:Structured_Name .
?name8 up:fullName 'Discriminating aspartyl-tRNA synthetase' ;
up:shortName 'D-AspRS' ;
rdf:type up:Structured_Name .
?case11 up:classifiedWith GO:0000287 ,
keyword:460 ,
keyword:479 .
?case12 up:alternativeName ?name14 ,
?name15 ;
up:recommendedName ?name13 .
?name13 up:ecName '6.1.1.23' ;
up:fullName 'Aspartate--tRNA(Asp/Asn) ligase' ;
rdf:type up:Structured_Name .
?name14 up:fullName 'Aspartyl-tRNA synthetase' ;
up:shortName 'AspRS' ;
rdf:type up:Structured_Name .
?name15 up:fullName 'Non-discriminating aspartyl-tRNA synthetase' ;
up:shortName 'ND-AspRS' ;
rdf:type up:Structured_Name .
?case16 up:alternativeName ?name18 ;
up:recommendedName ?name17 .
?name17 up:ecName '6.1.1.12' ;
up:fullName 'Aspartate--tRNA ligase' ;
rdf:type up:Structured_Name .
?name18 up:fullName 'Aspartyl-tRNA synthetase' ;
up:shortName 'AspRS' ;
rdf:type up:Structured_Name .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for tRNA non-discrimination' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for tRNA discrimination' .
?pfsb27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:30616 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:30616 .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:30616 .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Aspartate' .
?pfsb54 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf chebi:29991 .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
up:ligand ?ligand69 ;
rdf:type up:Binding_Site_Annotation .
?pfsb67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?ligand69 rdfs:subClassOf chebi:29991 .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
up:ligand ?ligand76 ;
rdf:type up:Binding_Site_Annotation .
?pfsb74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand76 rdfs:subClassOf chebi:30616 .
?pfs79 up:annotation ?annotation80 .
?annotation80 faldo:begin ?pfsb81 ;
faldo:end ?pfse82 ;
up:ligand ?ligand83 ;
rdf:type up:Binding_Site_Annotation .
?pfsb81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?ligand83 rdfs:subClassOf chebi:29991 .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
up:ligand ?ligand90 ;
rdf:type up:Binding_Site_Annotation .
?pfsb88 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?ligand90 rdfs:subClassOf chebi:29991 .
?pfs93 up:annotation ?annotation94 .
?annotation94 faldo:begin ?pfsb95 ;
faldo:end ?pfse96 ;
up:ligand ?ligand97 ;
rdf:type up:Binding_Site_Annotation .
?pfsb95 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?pfse96 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?ligand97 rdfs:subClassOf chebi:18420 .
?pfs100 up:annotation ?annotation101 .
?annotation101 faldo:begin ?pfsb102 ;
faldo:end ?pfse103 ;
up:ligand ?ligand104 ;
rdf:type up:Binding_Site_Annotation .
?pfsb102 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?pfse103 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?ligand104 rdfs:subClassOf chebi:18420 .
?pfs107 up:annotation ?annotation108 .
?annotation108 faldo:begin ?pfsb109 ;
faldo:end ?pfse110 ;
up:ligand ?ligand111 ;
rdf:type up:Binding_Site_Annotation .
?pfsb109 faldo:position ?thisPositionOn112 ;
rdf:type faldo:ExactPosition .
?pfse110 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?ligand111 rdfs:subClassOf chebi:18420 .
_:734823 a rdf:Statement ;
up:attribution _:734784 ;
rdf:subject ?gene0 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene0 .
_:734824 a rdf:Statement ;
up:attribution _:734785 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:734825 a rdf:Statement ;
up:attribution _:734786 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:734826 a rdf:Statement ;
up:attribution _:734787 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:734827 a rdf:Statement ;
up:attribution _:734788 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:30 .
_:734828 a rdf:Statement ;
up:attribution _:734789 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:734829 a rdf:Statement ;
up:attribution _:734790 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:734830 a rdf:Statement ;
up:attribution _:734791 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:734831 a rdf:Statement ;
up:attribution _:734792 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:734832 a rdf:Statement ;
up:attribution _:734793 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:734833 a rdf:Statement ;
up:attribution _:734794 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004815 .
_:734834 a rdf:Statement ;
up:attribution _:734795 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:734835 a rdf:Statement ;
up:attribution _:734796 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006422 .
_:734836 a rdf:Statement ;
up:attribution _:734797 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:734837 a rdf:Statement ;
up:attribution _:734798 ;
rdf:subject ?case5 ;
rdf:predicate up:recommendedName ;
rdf:object ?name6 .
_:734838 a rdf:Statement ;
up:attribution _:734799 ;
rdf:subject ?case5 ;
rdf:predicate up:alternativeName ;
rdf:object ?name7 .
_:734839 a rdf:Statement ;
up:attribution _:734800 ;
rdf:subject ?case5 ;
rdf:predicate up:alternativeName ;
rdf:object ?name8 .
_:734840 a rdf:Statement ;
up:attribution _:734801 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:734841 a rdf:Statement ;
up:attribution _:734802 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:734842 a rdf:Statement ;
up:attribution _:734803 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:734843 a rdf:Statement ;
up:attribution _:734804 ;
rdf:subject ?case12 ;
rdf:predicate up:recommendedName ;
rdf:object ?name13 .
_:734844 a rdf:Statement ;
up:attribution _:734805 ;
rdf:subject ?case12 ;
rdf:predicate up:alternativeName ;
rdf:object ?name14 .
_:734845 a rdf:Statement ;
up:attribution _:734806 ;
rdf:subject ?case12 ;
rdf:predicate up:alternativeName ;
rdf:object ?name15 .
_:734846 a rdf:Statement ;
up:attribution _:734807 ;
rdf:subject ?case16 ;
rdf:predicate up:recommendedName ;
rdf:object ?name17 .
_:734847 a rdf:Statement ;
up:attribution _:734808 ;
rdf:subject ?case16 ;
rdf:predicate up:alternativeName ;
rdf:object ?name18 .
_:734848 a rdf:Statement ;
up:source unirule:MF_02075 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:734849 a rdf:Statement ;
up:attribution _:734809 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:734850 a rdf:Statement ;
up:source unirule:MF_02075 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:734851 a rdf:Statement ;
up:attribution _:734810 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:734852 a rdf:Statement ;
up:source unirule:MF_02075 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:734853 a rdf:Statement ;
up:attribution _:734811 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:734854 a rdf:Statement ;
up:source unirule:MF_02075 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:734855 a rdf:Statement ;
up:attribution _:734812 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:734856 a rdf:Statement ;
up:source unirule:MF_02075 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:734857 a rdf:Statement ;
up:attribution _:734813 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:734858 a rdf:Statement ;
up:source unirule:MF_02075 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:734859 a rdf:Statement ;
up:attribution _:734814 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:734860 a rdf:Statement ;
up:source unirule:MF_02075 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:734861 a rdf:Statement ;
up:attribution _:734815 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:734862 a rdf:Statement ;
up:source unirule:MF_02075 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:734863 a rdf:Statement ;
up:attribution _:734816 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:734864 a rdf:Statement ;
up:source unirule:MF_02075 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:734865 a rdf:Statement ;
up:attribution _:734817 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:734866 a rdf:Statement ;
up:source unirule:MF_02075 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:734867 a rdf:Statement ;
up:attribution _:734818 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:734868 a rdf:Statement ;
up:source unirule:MF_02075 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:734869 a rdf:Statement ;
up:attribution _:734819 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:734870 a rdf:Statement ;
up:source unirule:MF_02075 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:734871 a rdf:Statement ;
up:attribution _:734820 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:734872 a rdf:Statement ;
up:source unirule:MF_02075 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:734873 a rdf:Statement ;
up:attribution _:734821 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:734874 a rdf:Statement ;
up:source unirule:MF_02075 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:734875 a rdf:Statement ;
up:attribution _:734822 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02075
#Rule MF_02075 Created by:? on:2016-09-29 Modified by:Edouard de Castro on:2024-09-03
VALUES ?supertaxon114 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02075 .
?thisOrganism rdfs:subClassOf+ ?supertaxon114 .
BIND(URI(CONCAT(STR(?this), '#MF_02075a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_02075a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02075a4')) AS ?annotation4) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch119 faldo:location ?templateMotifSequenceMatchRegionQ9RVH4120 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9RVH4122 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9RVH4MF_02075115 .
?templateMotifSequenceMatchRegionQ9RVH4120 faldo:begin ?templateMotifSequenceMatchBeginQ9RVH4121 .
?templateMotifSequenceMatchBeginQ9RVH4121 faldo:position ?templateMotifSequenceMatchBeginPositionQ9RVH4116 ;
faldo:reference isoform:Q9RVH4-1 .
?templateMotifSequenceProfileAlignmentOperationQ9RVH4122 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch123 faldo:location ?targetMotifMatchRegionMatch124 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075126 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9RVH4MF_02075117 .
?targetMotifMatchRegionMatch124 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075125 .
?targetMotifMatchRegionMatchBeginMF_02075125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075118 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02075126 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagNonDiscr_arch) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9RVH4MF_02075115, 1, (STRLEN(?templateMotifCigarQ9RVH4MF_02075115) - STRLEN(REPLACE(?templateMotifCigarQ9RVH4MF_02075115, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionQ9RVH4116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9RVH4MF_02075117, 1, (STRLEN(?targetMotifMatchCigarQ9RVH4MF_02075117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9RVH4MF_02075117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9RVH4MF_02075117, 1, (STRLEN(?targetMotifMatchCigarQ9RVH4MF_02075117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9RVH4MF_02075117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) .
BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_02075118) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t129) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'P')) .
BIND(URI(CONCAT(STR(?this), '#MF_02075a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionQ52428135 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428137 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ52428MF_02075130 .
?templateMotifSequenceMatchRegionQ52428135 faldo:begin ?templateMotifSequenceMatchBeginQ52428136 .
?templateMotifSequenceMatchBeginQ52428136 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428131 ;
faldo:reference isoform:Q52428-1 .
?templateMotifSequenceProfileAlignmentOperationQ52428137 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075141 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ52428MF_02075132 .
?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075140 .
?targetMotifMatchRegionMatchBeginMF_02075140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075133 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02075141 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagDiscr_arch) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075130, 1, (STRLEN(?templateMotifCigarQ52428MF_02075130) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075130, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionQ52428131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075132, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075132) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075132, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075132) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) .
BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_02075133) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs2t144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02075a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch149 faldo:location ?templateMotifSequenceMatchRegionQ52428150 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428152 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ52428MF_02075145 .
?templateMotifSequenceMatchRegionQ52428150 faldo:begin ?templateMotifSequenceMatchBeginQ52428151 .
?templateMotifSequenceMatchBeginQ52428151 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428146 ;
faldo:reference isoform:Q52428-1 .
?templateMotifSequenceProfileAlignmentOperationQ52428152 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch153 faldo:location ?targetMotifMatchRegionMatch154 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075156 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ52428MF_02075147 .
?targetMotifMatchRegionMatch154 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075155 .
?targetMotifMatchRegionMatchBeginMF_02075155 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075148 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02075156 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075145, 1, (STRLEN(?templateMotifCigarQ52428MF_02075145) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075145, CONCAT('^(?:-*[^-]){', STR(((214 - ?templateMotifSequenceMatchBeginPositionQ52428146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075147, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075147) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075147, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075147) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) .
BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_02075148) - 1) AS ?thisPositionOn36) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075145, 1, (STRLEN(?templateMotifCigarQ52428MF_02075145) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075145, CONCAT('^(?:-*[^-]){', STR(((216 - ?templateMotifSequenceMatchBeginPositionQ52428146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075147, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075147) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075147, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075147) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) .
BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_02075148) - 1) AS ?thisPositionOn37) .
BIND(?this AS ?pfs3t161) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER (REGEX('R[ARNDCQEGHILKMFPSTWYVBZJUOX]E', SUBSTR(?thisSequenceValue, ?thisPositionOn36, (?thisPositionOn37 - ?thisPositionOn36)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02075a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch166 faldo:location ?templateMotifSequenceMatchRegionQ52428167 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428169 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ52428MF_02075162 .
?templateMotifSequenceMatchRegionQ52428167 faldo:begin ?templateMotifSequenceMatchBeginQ52428168 .
?templateMotifSequenceMatchBeginQ52428168 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428163 ;
faldo:reference isoform:Q52428-1 .
?templateMotifSequenceProfileAlignmentOperationQ52428169 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch170 faldo:location ?targetMotifMatchRegionMatch171 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075173 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ52428MF_02075164 .
?targetMotifMatchRegionMatch171 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075172 .
?targetMotifMatchRegionMatchBeginMF_02075172 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075165 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02075173 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075162, 1, (STRLEN(?templateMotifCigarQ52428MF_02075162) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075162, CONCAT('^(?:-*[^-]){', STR(((222 - ?templateMotifSequenceMatchBeginPositionQ52428163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075164, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075164) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075164, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075164) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), '')))), '[^-]', ''))) AS ?step2175) .
BIND(((?step2175 + ?targetMotifMatchRegionMatchBeginPositionMF_02075165) - 1) AS ?thisPositionOn43) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075162, 1, (STRLEN(?templateMotifCigarQ52428MF_02075162) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075162, CONCAT('^(?:-*[^-]){', STR(((224 - ?templateMotifSequenceMatchBeginPositionQ52428163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075164, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075164) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075164, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075164) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075164, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) .
BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_02075165) - 1) AS ?thisPositionOn44) .
BIND(?this AS ?pfs3t178) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER (REGEX('[RK]H[LV]', SUBSTR(?thisSequenceValue, ?thisPositionOn43, (?thisPositionOn44 - ?thisPositionOn43)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02075a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch183 faldo:location ?templateMotifSequenceMatchRegionQ52428184 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428186 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ52428MF_02075179 .
?templateMotifSequenceMatchRegionQ52428184 faldo:begin ?templateMotifSequenceMatchBeginQ52428185 .
?templateMotifSequenceMatchBeginQ52428185 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428180 ;
faldo:reference isoform:Q52428-1 .
?templateMotifSequenceProfileAlignmentOperationQ52428186 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch187 faldo:location ?targetMotifMatchRegionMatch188 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075190 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ52428MF_02075181 .
?targetMotifMatchRegionMatch188 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075189 .
?targetMotifMatchRegionMatchBeginMF_02075189 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075182 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02075190 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075179, 1, (STRLEN(?templateMotifCigarQ52428MF_02075179) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075179, CONCAT('^(?:-*[^-]){', STR(((409 - ?templateMotifSequenceMatchBeginPositionQ52428180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075181, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075181) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075181, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075181) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), '')))), '[^-]', ''))) AS ?step2192) .
BIND(((?step2192 + ?targetMotifMatchRegionMatchBeginPositionMF_02075182) - 1) AS ?thisPositionOn50) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075179, 1, (STRLEN(?templateMotifCigarQ52428MF_02075179) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075179, CONCAT('^(?:-*[^-]){', STR(((412 - ?templateMotifSequenceMatchBeginPositionQ52428180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075181, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075181) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075181, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075181) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), '')))), '[^-]', ''))) AS ?step2194) .
BIND(((?step2194 + ?targetMotifMatchRegionMatchBeginPositionMF_02075182) - 1) AS ?thisPositionOn51) .
BIND(?this AS ?pfs3t195) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn50, (?thisPositionOn51 - ?thisPositionOn50)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02075a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch200 faldo:location ?templateMotifSequenceMatchRegionQ52428201 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428203 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ52428MF_02075196 .
?templateMotifSequenceMatchRegionQ52428201 faldo:begin ?templateMotifSequenceMatchBeginQ52428202 .
?templateMotifSequenceMatchBeginQ52428202 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428197 ;
faldo:reference isoform:Q52428-1 .
?templateMotifSequenceProfileAlignmentOperationQ52428203 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch204 faldo:location ?targetMotifMatchRegionMatch205 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075207 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ52428MF_02075198 .
?targetMotifMatchRegionMatch205 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075206 .
?targetMotifMatchRegionMatchBeginMF_02075206 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075199 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02075207 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075196, 1, (STRLEN(?templateMotifCigarQ52428MF_02075196) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075196, CONCAT('^(?:-*[^-]){', STR(((192 - ?templateMotifSequenceMatchBeginPositionQ52428197) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1208) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075198, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075198) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1208), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075198, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075198) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1208), '}'), '')))), '[^-]', ''))) AS ?step2209) .
BIND(((?step2209 + ?targetMotifMatchRegionMatchBeginPositionMF_02075199) - 1) AS ?thisPositionOn56) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075196, 1, (STRLEN(?templateMotifCigarQ52428MF_02075196) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075196, CONCAT('^(?:-*[^-]){', STR(((195 - ?templateMotifSequenceMatchBeginPositionQ52428197) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075198, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075198) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075198, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075198) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) .
BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_02075199) - 1) AS ?thisPositionOn57) .
BIND(?this AS ?pfs3t212) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse55) .
FILTER (REGEX('Q[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]K', SUBSTR(?thisSequenceValue, ?thisPositionOn56, (?thisPositionOn57 - ?thisPositionOn56)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02075a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch217 faldo:location ?templateMotifSequenceMatchRegionQ52428218 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428220 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ52428MF_02075213 .
?templateMotifSequenceMatchRegionQ52428218 faldo:begin ?templateMotifSequenceMatchBeginQ52428219 .
?templateMotifSequenceMatchBeginQ52428219 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428214 ;
faldo:reference isoform:Q52428-1 .
?templateMotifSequenceProfileAlignmentOperationQ52428220 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch221 faldo:location ?targetMotifMatchRegionMatch222 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075224 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ52428MF_02075215 .
?targetMotifMatchRegionMatch222 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075223 .
?targetMotifMatchRegionMatchBeginMF_02075223 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075216 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02075224 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075213, 1, (STRLEN(?templateMotifCigarQ52428MF_02075213) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075213, CONCAT('^(?:-*[^-]){', STR(((170 - ?templateMotifSequenceMatchBeginPositionQ52428214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1225) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075215, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075215) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075215, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075215) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), '')))), '[^-]', ''))) AS ?step2226) .
BIND(((?step2226 + ?targetMotifMatchRegionMatchBeginPositionMF_02075216) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs3t227) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02075a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch232 faldo:location ?templateMotifSequenceMatchRegionQ52428233 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428235 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ52428MF_02075228 .
?templateMotifSequenceMatchRegionQ52428233 faldo:begin ?templateMotifSequenceMatchBeginQ52428234 .
?templateMotifSequenceMatchBeginQ52428234 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428229 ;
faldo:reference isoform:Q52428-1 .
?templateMotifSequenceProfileAlignmentOperationQ52428235 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch236 faldo:location ?targetMotifMatchRegionMatch237 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075239 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ52428MF_02075230 .
?targetMotifMatchRegionMatch237 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075238 .
?targetMotifMatchRegionMatchBeginMF_02075238 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075231 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02075239 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075228, 1, (STRLEN(?templateMotifCigarQ52428MF_02075228) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075228, CONCAT('^(?:-*[^-]){', STR(((214 - ?templateMotifSequenceMatchBeginPositionQ52428229) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1240) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075230, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075230) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075230, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075230) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), '')))), '[^-]', ''))) AS ?step2241) .
BIND(((?step2241 + ?targetMotifMatchRegionMatchBeginPositionMF_02075231) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs3t242) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02075a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch247 faldo:location ?templateMotifSequenceMatchRegionQ52428248 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428250 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ52428MF_02075243 .
?templateMotifSequenceMatchRegionQ52428248 faldo:begin ?templateMotifSequenceMatchBeginQ52428249 .
?templateMotifSequenceMatchBeginQ52428249 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428244 ;
faldo:reference isoform:Q52428-1 .
?templateMotifSequenceProfileAlignmentOperationQ52428250 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch251 faldo:location ?targetMotifMatchRegionMatch252 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075254 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ52428MF_02075245 .
?targetMotifMatchRegionMatch252 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075253 .
?targetMotifMatchRegionMatchBeginMF_02075253 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075246 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02075254 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075243, 1, (STRLEN(?templateMotifCigarQ52428MF_02075243) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075243, CONCAT('^(?:-*[^-]){', STR(((361 - ?templateMotifSequenceMatchBeginPositionQ52428244) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1255) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075245, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075245) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075245, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075245) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), '')))), '[^-]', ''))) AS ?step2256) .
BIND(((?step2256 + ?targetMotifMatchRegionMatchBeginPositionMF_02075246) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs3t257) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02075a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch262 faldo:location ?templateMotifSequenceMatchRegionQ52428263 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428265 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ52428MF_02075258 .
?templateMotifSequenceMatchRegionQ52428263 faldo:begin ?templateMotifSequenceMatchBeginQ52428264 .
?templateMotifSequenceMatchBeginQ52428264 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428259 ;
faldo:reference isoform:Q52428-1 .
?templateMotifSequenceProfileAlignmentOperationQ52428265 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch266 faldo:location ?targetMotifMatchRegionMatch267 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075269 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ52428MF_02075260 .
?targetMotifMatchRegionMatch267 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075268 .
?targetMotifMatchRegionMatchBeginMF_02075268 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075261 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02075269 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075258, 1, (STRLEN(?templateMotifCigarQ52428MF_02075258) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075258, CONCAT('^(?:-*[^-]){', STR(((364 - ?templateMotifSequenceMatchBeginPositionQ52428259) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1270) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075260, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075260) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075260, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075260) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), '')))), '[^-]', ''))) AS ?step2271) .
BIND(((?step2271 + ?targetMotifMatchRegionMatchBeginPositionMF_02075261) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs3t272) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse82) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02075a80')) AS ?annotation80) .
BIND(?this AS ?pfs79) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch277 faldo:location ?templateMotifSequenceMatchRegionQ52428278 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428280 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ52428MF_02075273 .
?templateMotifSequenceMatchRegionQ52428278 faldo:begin ?templateMotifSequenceMatchBeginQ52428279 .
?templateMotifSequenceMatchBeginQ52428279 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428274 ;
faldo:reference isoform:Q52428-1 .
?templateMotifSequenceProfileAlignmentOperationQ52428280 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch281 faldo:location ?targetMotifMatchRegionMatch282 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075284 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ52428MF_02075275 .
?targetMotifMatchRegionMatch282 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075283 .
?targetMotifMatchRegionMatchBeginMF_02075283 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075276 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02075284 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075273, 1, (STRLEN(?templateMotifCigarQ52428MF_02075273) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075273, CONCAT('^(?:-*[^-]){', STR(((368 - ?templateMotifSequenceMatchBeginPositionQ52428274) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1285) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075275, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075275) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1285), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075275, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075275) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1285), '}'), '')))), '[^-]', ''))) AS ?step2286) .
BIND(((?step2286 + ?targetMotifMatchRegionMatchBeginPositionMF_02075276) - 1) AS ?thisPositionOn91) .
BIND(?thisPositionOn91 AS ?thisPositionOn92) .
BIND(?this AS ?pfs3t287) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse89) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02075a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch292 faldo:location ?templateMotifSequenceMatchRegionQ52428293 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428295 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ52428MF_02075288 .
?templateMotifSequenceMatchRegionQ52428293 faldo:begin ?templateMotifSequenceMatchBeginQ52428294 .
?templateMotifSequenceMatchBeginQ52428294 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428289 ;
faldo:reference isoform:Q52428-1 .
?templateMotifSequenceProfileAlignmentOperationQ52428295 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch296 faldo:location ?targetMotifMatchRegionMatch297 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075299 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ52428MF_02075290 .
?targetMotifMatchRegionMatch297 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075298 .
?targetMotifMatchRegionMatchBeginMF_02075298 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075291 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02075299 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075288, 1, (STRLEN(?templateMotifCigarQ52428MF_02075288) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075288, CONCAT('^(?:-*[^-]){', STR(((361 - ?templateMotifSequenceMatchBeginPositionQ52428289) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1300) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075290, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075290) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075290, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1300), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075290, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075290) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075290, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1300), '}'), '')))), '[^-]', ''))) AS ?step2301) .
BIND(((?step2301 + ?targetMotifMatchRegionMatchBeginPositionMF_02075291) - 1) AS ?thisPositionOn98) .
BIND(?thisPositionOn98 AS ?thisPositionOn99) .
BIND(?this AS ?pfs4t302) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfsb95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfse96) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn98, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02075a94')) AS ?annotation94) .
BIND(?this AS ?pfs93) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch307 faldo:location ?templateMotifSequenceMatchRegionQ52428308 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428310 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ52428MF_02075303 .
?templateMotifSequenceMatchRegionQ52428308 faldo:begin ?templateMotifSequenceMatchBeginQ52428309 .
?templateMotifSequenceMatchBeginQ52428309 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428304 ;
faldo:reference isoform:Q52428-1 .
?templateMotifSequenceProfileAlignmentOperationQ52428310 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch311 faldo:location ?targetMotifMatchRegionMatch312 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075314 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ52428MF_02075305 .
?targetMotifMatchRegionMatch312 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075313 .
?targetMotifMatchRegionMatchBeginMF_02075313 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075306 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02075314 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075303, 1, (STRLEN(?templateMotifCigarQ52428MF_02075303) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075303, CONCAT('^(?:-*[^-]){', STR(((361 - ?templateMotifSequenceMatchBeginPositionQ52428304) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1315) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075305, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075305) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075305, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1315), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075305, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075305) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075305, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1315), '}'), '')))), '[^-]', ''))) AS ?step2316) .
BIND(((?step2316 + ?targetMotifMatchRegionMatchBeginPositionMF_02075306) - 1) AS ?thisPositionOn105) .
BIND(?thisPositionOn105 AS ?thisPositionOn106) .
BIND(?this AS ?pfs4t317) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse103) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02075a101')) AS ?annotation101) .
BIND(?this AS ?pfs100) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch322 faldo:location ?templateMotifSequenceMatchRegionQ52428323 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ52428325 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ52428MF_02075318 .
?templateMotifSequenceMatchRegionQ52428323 faldo:begin ?templateMotifSequenceMatchBeginQ52428324 .
?templateMotifSequenceMatchBeginQ52428324 faldo:position ?templateMotifSequenceMatchBeginPositionQ52428319 ;
faldo:reference isoform:Q52428-1 .
?templateMotifSequenceProfileAlignmentOperationQ52428325 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
?targetMotifMatch326 faldo:location ?targetMotifMatchRegionMatch327 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02075329 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ52428MF_02075320 .
?targetMotifMatchRegionMatch327 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02075328 .
?targetMotifMatchRegionMatchBeginMF_02075328 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02075321 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02075329 edam:has_input signature:MF_02075 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ52428MF_02075318, 1, (STRLEN(?templateMotifCigarQ52428MF_02075318) - STRLEN(REPLACE(?templateMotifCigarQ52428MF_02075318, CONCAT('^(?:-*[^-]){', STR(((364 - ?templateMotifSequenceMatchBeginPositionQ52428319) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1330) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ52428MF_02075320, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075320) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075320, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1330), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ52428MF_02075320, 1, (STRLEN(?targetMotifMatchCigarQ52428MF_02075320) - STRLEN(REPLACE(?targetMotifMatchCigarQ52428MF_02075320, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1330), '}'), '')))), '[^-]', ''))) AS ?step2331) .
BIND(((?step2331 + ?targetMotifMatchRegionMatchBeginPositionMF_02075321) - 1) AS ?thisPositionOn112) .
BIND(?thisPositionOn112 AS ?thisPositionOn113) .
BIND(?this AS ?pfs4t332) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfsb109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfse110) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn112, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02075a108')) AS ?annotation108) .
BIND(?this AS ?pfs107) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag333) .
BIND(URI(CONCAT(STR(?this), '#MF_02075a6')) AS ?name6) .
BIND(URI(CONCAT(STR(?this), '#MF_02075a7')) AS ?name7) .
BIND(URI(CONCAT(STR(?this), '#MF_02075a8')) AS ?name8) .
}
BIND(IF(BOUND(?tagDiscr_arch), ?caseWithTag333, ?UNBOUND_VARIABLE) AS ?case5) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag334) .
}
BIND(IF(BOUND(?tagNonDiscr_arch), ?caseWithTag334, ?UNBOUND_VARIABLE) AS ?case9) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag335) .
}
BIND(IF(BOUND(?tagNonDiscr_arch), ?caseWithTag335, ?UNBOUND_VARIABLE) AS ?case10) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag336) .
BIND(URI(CONCAT(STR(?this), '#MF_02075a13')) AS ?name13) .
BIND(URI(CONCAT(STR(?this), '#MF_02075a14')) AS ?name14) .
BIND(URI(CONCAT(STR(?this), '#MF_02075a15')) AS ?name15) .
}
BIND(IF((BOUND(?tagNonDiscr_arch) || BOUND(?tagDiscr_arch)), ?caseWithTag336, ?UNBOUND_VARIABLE) AS ?case12) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag337) .
BIND(URI(CONCAT(STR(?this), '#MF_02075a17')) AS ?name17) .
BIND(URI(CONCAT(STR(?this), '#MF_02075a18')) AS ?name18) .
}
BIND(IF((BOUND(?tagNonDiscr_arch) || BOUND(?tagDiscr_arch)), ?caseWithTag337, ?UNBOUND_VARIABLE) AS ?case16) .
}
"xsd:string |
