| http://purl.uniprot.org/unirules/MF_03171#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:858494 up:source unirule:MF_03171 .
_:858495 up:source unirule:MF_03171 .
_:858496 up:source unirule:MF_03171 .
_:858497 up:source unirule:MF_03171 .
_:858498 up:source unirule:MF_03171 .
_:858499 up:source unirule:MF_03171 .
_:858500 up:source unirule:MF_03171 .
_:858501 up:source unirule:MF_03171 .
_:858502 up:source unirule:MF_03171 .
_:858503 up:source unirule:MF_03171 .
_:858504 up:source unirule:MF_03171 .
_:858505 up:source unirule:MF_03171 .
_:858506 up:source unirule:MF_03171 .
_:858507 up:source unirule:MF_03171 .
_:858508 up:source unirule:MF_03171 .
_:858509 up:source unirule:MF_03171 .
_:858510 up:source unirule:MF_03171 .
_:858511 up:source unirule:MF_03171 .
_:858512 up:source unirule:MF_03171 .
_:858513 up:source unirule:MF_03171 .
_:858514 up:source unirule:MF_03171 .
_:858515 up:source unirule:MF_03171 .
_:858516 up:source unirule:MF_03171 .
_:858517 up:source unirule:MF_03171 .
_:858518 up:source unirule:MF_03171 .
_:858519 up:source unirule:MF_03171 .
_:858520 up:source unirule:MF_03171 .
_:858521 up:source unirule:MF_03171 .
_:858522 up:source unirule:MF_03171 .
_:858523 up:source unirule:MF_03171 .
_:858524 up:source unirule:MF_03171 .
_:858525 up:source unirule:MF_03171 .
_:858526 up:source unirule:MF_03171 .
_:858527 up:source unirule:MF_03171 .
_:858528 up:source unirule:MF_03171 .
_:858529 up:source unirule:MF_03171 .
_:858530 up:source unirule:MF_03171 .
_:858531 up:source unirule:MF_03171 .
?this up:annotation ?annotation0 ,
?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0004017 ,
GO:0005737 ,
GO:0006172 ,
GO:0046033 ,
GO:0046034 ,
keyword:418 ,
keyword:547 ,
keyword:67 ,
keyword:808 ,
keyword:963 .
?annotation0 up:activity ?activity1 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity1 up:catalyticActivity ;
up:enzymeClass .
?annotation2 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation5 a up:Domain_Annotation ;
rdfs:comment 'Consists of three domains, a large central CORE domain and two small peripheral domains, NMPbind and LID, which undergo movements during catalysis. The LID domain closes over the site of phosphoryl transfer upon ATP binding. Assembling and disassembling the active center during each catalytic cycle provides an effective means to prevent ATP hydrolysis.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the adenylate kinase family. AK1 subfamily.' .
?case7 up:classifiedWith keyword:7 .
?case8 up:alternativeName ?name10 ,
?name11 ,
?name12 ,
?name13 ;
up:recommendedName ?name9 .
?name9 up:ecName '2.7.4.3' ,
'2.7.4.6' ;
up:fullName 'Adenylate kinase isoenzyme 1' ;
up:shortName 'AK 1' ;
rdf:type up:Structured_Name .
?name10 up:fullName 'ATP-AMP transphosphorylase 1' ;
rdf:type up:Structured_Name .
?name11 up:fullName 'ATP:AMP phosphotransferase' ;
rdf:type up:Structured_Name .
?name12 up:fullName 'Adenylate monophosphate kinase' ;
rdf:type up:Structured_Name .
?name13 up:fullName 'Myokinase' ;
rdf:type up:Structured_Name .
?case14 up:alternativeName ?name16 ,
?name17 ,
?name18 ;
up:recommendedName ?name15 .
?name15 up:ecName '2.7.4.3' ;
up:fullName 'Adenylate kinase isoenzyme 1' ;
up:shortName 'AK 1' ;
rdf:type up:Structured_Name .
?name16 up:fullName 'ATP-AMP transphosphorylase 1' ;
rdf:type up:Structured_Name .
?name17 up:fullName 'ATP:AMP phosphotransferase' ;
rdf:type up:Structured_Name .
?name18 up:fullName 'Adenylate monophosphate kinase' ;
rdf:type up:Structured_Name .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N-acetylmethionine' .
?pfsb21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'NMPbind' .
?pfsb27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'LID' .
?pfsb33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:30616 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:30616 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:456215 .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf chebi:456215 .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
up:ligand ?ligand69 ;
rdf:type up:Binding_Site_Annotation .
?pfsb67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?ligand69 rdfs:subClassOf chebi:456215 .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
up:ligand ?ligand76 ;
rdf:type up:Binding_Site_Annotation .
?pfsb74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand76 rdfs:subClassOf chebi:456215 .
?pfs79 up:annotation ?annotation80 .
?annotation80 faldo:begin ?pfsb81 ;
faldo:end ?pfse82 ;
up:ligand ?ligand83 ;
rdf:type up:Binding_Site_Annotation .
?pfsb81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?ligand83 rdfs:subClassOf chebi:456215 .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
up:ligand ?ligand90 ;
rdf:type up:Binding_Site_Annotation .
?pfsb88 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?ligand90 rdfs:subClassOf chebi:30616 .
?pfs93 up:annotation ?annotation94 .
?annotation94 faldo:begin ?pfsb95 ;
faldo:end ?pfse96 ;
up:ligand ?ligand97 ;
rdf:type up:Binding_Site_Annotation .
?pfsb95 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?pfse96 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?ligand97 rdfs:subClassOf chebi:456215 .
?pfs100 up:annotation ?annotation101 .
?annotation101 faldo:begin ?pfsb102 ;
faldo:end ?pfse103 ;
up:ligand ?ligand104 ;
rdf:type up:Binding_Site_Annotation .
?pfsb102 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?pfse103 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?ligand104 rdfs:subClassOf chebi:456215 .
_:858532 a rdf:Statement ;
up:attribution _:858494 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:858533 a rdf:Statement ;
up:attribution _:858495 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:858534 a rdf:Statement ;
up:attribution _:858496 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:858535 a rdf:Statement ;
up:attribution _:858497 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:858536 a rdf:Statement ;
up:attribution _:858498 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:858537 a rdf:Statement ;
up:attribution _:858499 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:858538 a rdf:Statement ;
up:attribution _:858500 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:858539 a rdf:Statement ;
up:attribution _:858501 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:858540 a rdf:Statement ;
up:attribution _:858502 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:858541 a rdf:Statement ;
up:attribution _:858503 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:858542 a rdf:Statement ;
up:attribution _:858504 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:858543 a rdf:Statement ;
up:attribution _:858505 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004017 .
_:858544 a rdf:Statement ;
up:attribution _:858506 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006172 .
_:858545 a rdf:Statement ;
up:attribution _:858507 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046033 .
_:858546 a rdf:Statement ;
up:attribution _:858508 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046034 .
_:858547 a rdf:Statement ;
up:attribution _:858509 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
_:858548 a rdf:Statement ;
up:attribution _:858510 ;
rdf:subject ?case8 ;
rdf:predicate up:recommendedName ;
rdf:object ?name9 .
_:858549 a rdf:Statement ;
up:attribution _:858511 ;
rdf:subject ?case8 ;
rdf:predicate up:alternativeName ;
rdf:object ?name10 .
_:858550 a rdf:Statement ;
up:attribution _:858512 ;
rdf:subject ?case8 ;
rdf:predicate up:alternativeName ;
rdf:object ?name11 .
_:858551 a rdf:Statement ;
up:attribution _:858513 ;
rdf:subject ?case8 ;
rdf:predicate up:alternativeName ;
rdf:object ?name12 .
_:858552 a rdf:Statement ;
up:attribution _:858514 ;
rdf:subject ?case8 ;
rdf:predicate up:alternativeName ;
rdf:object ?name13 .
_:858553 a rdf:Statement ;
up:attribution _:858515 ;
rdf:subject ?case14 ;
rdf:predicate up:recommendedName ;
rdf:object ?name15 .
_:858554 a rdf:Statement ;
up:attribution _:858516 ;
rdf:subject ?case14 ;
rdf:predicate up:alternativeName ;
rdf:object ?name16 .
_:858555 a rdf:Statement ;
up:attribution _:858517 ;
rdf:subject ?case14 ;
rdf:predicate up:alternativeName ;
rdf:object ?name17 .
_:858556 a rdf:Statement ;
up:attribution _:858518 ;
rdf:subject ?case14 ;
rdf:predicate up:alternativeName ;
rdf:object ?name18 .
_:858557 a rdf:Statement ;
up:source unirule:MF_03171 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:858558 a rdf:Statement ;
up:attribution _:858519 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:858559 a rdf:Statement ;
up:source unirule:MF_03171 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:858560 a rdf:Statement ;
up:attribution _:858520 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:858561 a rdf:Statement ;
up:source unirule:MF_03171 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:858562 a rdf:Statement ;
up:attribution _:858521 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:858563 a rdf:Statement ;
up:source unirule:MF_03171 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:858564 a rdf:Statement ;
up:attribution _:858522 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:858565 a rdf:Statement ;
up:source unirule:MF_03171 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:858566 a rdf:Statement ;
up:attribution _:858523 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:858567 a rdf:Statement ;
up:source unirule:MF_03171 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:858568 a rdf:Statement ;
up:attribution _:858524 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:858569 a rdf:Statement ;
up:source unirule:MF_03171 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:858570 a rdf:Statement ;
up:attribution _:858525 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:858571 a rdf:Statement ;
up:source unirule:MF_03171 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:858572 a rdf:Statement ;
up:attribution _:858526 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:858573 a rdf:Statement ;
up:source unirule:MF_03171 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:858574 a rdf:Statement ;
up:attribution _:858527 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:858575 a rdf:Statement ;
up:source unirule:MF_03171 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:858576 a rdf:Statement ;
up:attribution _:858528 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:858577 a rdf:Statement ;
up:source unirule:MF_03171 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:858578 a rdf:Statement ;
up:attribution _:858529 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:858579 a rdf:Statement ;
up:source unirule:MF_03171 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:858580 a rdf:Statement ;
up:attribution _:858530 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:858581 a rdf:Statement ;
up:source unirule:MF_03171 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:858582 a rdf:Statement ;
up:attribution _:858531 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03171
#Rule MF_03171 Created by:? on:2013-03-11 Modified by:Andrea Auchincloss on:2025-08-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03171 .
?thisOrganism rdfs:subClassOf+ taxon:33208 .
BIND(URI(CONCAT(STR(?this), '#MF_03171a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch111 faldo:location ?templateMotifSequenceMatchRegionP00568112 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00568114 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00568MF_03171107 .
?templateMotifSequenceMatchRegionP00568112 faldo:begin ?templateMotifSequenceMatchBeginP00568113 .
?templateMotifSequenceMatchBeginP00568113 faldo:position ?templateMotifSequenceMatchBeginPositionP00568108 ;
faldo:reference isoform:P00568-1 .
?templateMotifSequenceProfileAlignmentOperationP00568114 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
?targetMotifMatch115 faldo:location ?targetMotifMatchRegionMatch116 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03171118 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00568MF_03171109 .
?targetMotifMatchRegionMatch116 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03171117 .
?targetMotifMatchRegionMatchBeginMF_03171117 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03171110 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03171118 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagacetyl) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00568MF_03171107, 1, (STRLEN(?templateMotifCigarP00568MF_03171107) - STRLEN(REPLACE(?templateMotifCigarP00568MF_03171107, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP00568108) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00568MF_03171109, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171109) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00568MF_03171109, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171109) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171109, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) .
BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_03171110) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch126 faldo:location ?templateMotifSequenceMatchRegionP00568127 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00568129 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00568MF_03171122 .
?templateMotifSequenceMatchRegionP00568127 faldo:begin ?templateMotifSequenceMatchBeginP00568128 .
?templateMotifSequenceMatchBeginP00568128 faldo:position ?templateMotifSequenceMatchBeginPositionP00568123 ;
faldo:reference isoform:P00568-1 .
?templateMotifSequenceProfileAlignmentOperationP00568129 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
?targetMotifMatch130 faldo:location ?targetMotifMatchRegionMatch131 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03171133 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00568MF_03171124 .
?targetMotifMatchRegionMatch131 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03171132 .
?targetMotifMatchRegionMatchBeginMF_03171132 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03171125 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03171133 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00568MF_03171122, 1, (STRLEN(?templateMotifCigarP00568MF_03171122) - STRLEN(REPLACE(?templateMotifCigarP00568MF_03171122, CONCAT('^(?:-*[^-]){', STR(((38 - ?templateMotifSequenceMatchBeginPositionP00568123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00568MF_03171124, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171124) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00568MF_03171124, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171124) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) .
BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_03171125) - 1) AS ?thisPositionOn29) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00568MF_03171122, 1, (STRLEN(?templateMotifCigarP00568MF_03171122) - STRLEN(REPLACE(?templateMotifCigarP00568MF_03171122, CONCAT('^(?:-*[^-]){', STR(((67 - ?templateMotifSequenceMatchBeginPositionP00568123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00568MF_03171124, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171124) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00568MF_03171124, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171124) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) .
BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_03171125) - 1) AS ?thisPositionOn30) .
BIND(?this AS ?pfs2t138) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse28) .
FILTER ((BOUND(?thisPositionOn29) && BOUND(?thisPositionOn30))) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch143 faldo:location ?templateMotifSequenceMatchRegionP00568144 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00568146 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00568MF_03171139 .
?templateMotifSequenceMatchRegionP00568144 faldo:begin ?templateMotifSequenceMatchBeginP00568145 .
?templateMotifSequenceMatchBeginP00568145 faldo:position ?templateMotifSequenceMatchBeginPositionP00568140 ;
faldo:reference isoform:P00568-1 .
?templateMotifSequenceProfileAlignmentOperationP00568146 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
?targetMotifMatch147 faldo:location ?targetMotifMatchRegionMatch148 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03171150 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00568MF_03171141 .
?targetMotifMatchRegionMatch148 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03171149 .
?targetMotifMatchRegionMatchBeginMF_03171149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03171142 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03171150 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00568MF_03171139, 1, (STRLEN(?templateMotifCigarP00568MF_03171139) - STRLEN(REPLACE(?templateMotifCigarP00568MF_03171139, CONCAT('^(?:-*[^-]){', STR(((131 - ?templateMotifSequenceMatchBeginPositionP00568140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00568MF_03171141, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171141) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00568MF_03171141, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171141) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) .
BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_03171142) - 1) AS ?thisPositionOn35) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00568MF_03171139, 1, (STRLEN(?templateMotifCigarP00568MF_03171139) - STRLEN(REPLACE(?templateMotifCigarP00568MF_03171139, CONCAT('^(?:-*[^-]){', STR(((141 - ?templateMotifSequenceMatchBeginPositionP00568140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00568MF_03171141, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171141) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00568MF_03171141, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171141) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) .
BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_03171142) - 1) AS ?thisPositionOn36) .
BIND(?this AS ?pfs2t155) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse34) .
FILTER ((BOUND(?thisPositionOn35) && BOUND(?thisPositionOn36))) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch160 faldo:location ?templateMotifSequenceMatchRegionP00568161 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00568163 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00568MF_03171156 .
?templateMotifSequenceMatchRegionP00568161 faldo:begin ?templateMotifSequenceMatchBeginP00568162 .
?templateMotifSequenceMatchBeginP00568162 faldo:position ?templateMotifSequenceMatchBeginPositionP00568157 ;
faldo:reference isoform:P00568-1 .
?templateMotifSequenceProfileAlignmentOperationP00568163 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
?targetMotifMatch164 faldo:location ?targetMotifMatchRegionMatch165 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03171167 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00568MF_03171158 .
?targetMotifMatchRegionMatch165 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03171166 .
?targetMotifMatchRegionMatchBeginMF_03171166 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03171159 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03171167 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00568MF_03171156, 1, (STRLEN(?templateMotifCigarP00568MF_03171156) - STRLEN(REPLACE(?templateMotifCigarP00568MF_03171156, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionP00568157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00568MF_03171158, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171158) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00568MF_03171158, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171158) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) .
BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_03171159) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs2t170) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER (BOUND(?thisPositionOn42)) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch175 faldo:location ?templateMotifSequenceMatchRegionP00568176 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00568178 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00568MF_03171171 .
?templateMotifSequenceMatchRegionP00568176 faldo:begin ?templateMotifSequenceMatchBeginP00568177 .
?templateMotifSequenceMatchBeginP00568177 faldo:position ?templateMotifSequenceMatchBeginPositionP00568172 ;
faldo:reference isoform:P00568-1 .
?templateMotifSequenceProfileAlignmentOperationP00568178 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
?targetMotifMatch179 faldo:location ?targetMotifMatchRegionMatch180 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03171182 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00568MF_03171173 .
?targetMotifMatchRegionMatch180 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03171181 .
?targetMotifMatchRegionMatchBeginMF_03171181 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03171174 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03171182 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00568MF_03171171, 1, (STRLEN(?templateMotifCigarP00568MF_03171171) - STRLEN(REPLACE(?templateMotifCigarP00568MF_03171171, CONCAT('^(?:-*[^-]){', STR(((18 - ?templateMotifSequenceMatchBeginPositionP00568172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00568MF_03171173, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171173) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00568MF_03171173, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171173) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), '')))), '[^-]', ''))) AS ?step2184) .
BIND(((?step2184 + ?targetMotifMatchRegionMatchBeginPositionMF_03171174) - 1) AS ?thisPositionOn49) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00568MF_03171171, 1, (STRLEN(?templateMotifCigarP00568MF_03171171) - STRLEN(REPLACE(?templateMotifCigarP00568MF_03171171, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionP00568172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00568MF_03171173, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171173) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00568MF_03171173, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171173) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) .
BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_03171174) - 1) AS ?thisPositionOn50) .
BIND(?this AS ?pfs2t187) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, (?thisPositionOn50 - ?thisPositionOn49)) = 'GSGKGT')) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch192 faldo:location ?templateMotifSequenceMatchRegionP00568193 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00568195 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00568MF_03171188 .
?templateMotifSequenceMatchRegionP00568193 faldo:begin ?templateMotifSequenceMatchBeginP00568194 .
?templateMotifSequenceMatchBeginP00568194 faldo:position ?templateMotifSequenceMatchBeginPositionP00568189 ;
faldo:reference isoform:P00568-1 .
?templateMotifSequenceProfileAlignmentOperationP00568195 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
?targetMotifMatch196 faldo:location ?targetMotifMatchRegionMatch197 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03171199 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00568MF_03171190 .
?targetMotifMatchRegionMatch197 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03171198 .
?targetMotifMatchRegionMatchBeginMF_03171198 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03171191 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03171199 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00568MF_03171188, 1, (STRLEN(?templateMotifCigarP00568MF_03171188) - STRLEN(REPLACE(?templateMotifCigarP00568MF_03171188, CONCAT('^(?:-*[^-]){', STR(((65 - ?templateMotifSequenceMatchBeginPositionP00568189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1200) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00568MF_03171190, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171190) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00568MF_03171190, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171190) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), '')))), '[^-]', ''))) AS ?step2201) .
BIND(((?step2201 + ?targetMotifMatchRegionMatchBeginPositionMF_03171191) - 1) AS ?thisPositionOn56) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00568MF_03171188, 1, (STRLEN(?templateMotifCigarP00568MF_03171188) - STRLEN(REPLACE(?templateMotifCigarP00568MF_03171188, CONCAT('^(?:-*[^-]){', STR(((67 - ?templateMotifSequenceMatchBeginPositionP00568189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00568MF_03171190, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171190) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00568MF_03171190, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171190) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_03171191) - 1) AS ?thisPositionOn57) .
BIND(?this AS ?pfs2t204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX]LV', SUBSTR(?thisSequenceValue, ?thisPositionOn56, (?thisPositionOn57 - ?thisPositionOn56)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionP00568210 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00568212 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00568MF_03171205 .
?templateMotifSequenceMatchRegionP00568210 faldo:begin ?templateMotifSequenceMatchBeginP00568211 .
?templateMotifSequenceMatchBeginP00568211 faldo:position ?templateMotifSequenceMatchBeginPositionP00568206 ;
faldo:reference isoform:P00568-1 .
?templateMotifSequenceProfileAlignmentOperationP00568212 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03171216 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00568MF_03171207 .
?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03171215 .
?targetMotifMatchRegionMatchBeginMF_03171215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03171208 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03171216 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00568MF_03171205, 1, (STRLEN(?templateMotifCigarP00568MF_03171205) - STRLEN(REPLACE(?templateMotifCigarP00568MF_03171205, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionP00568206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00568MF_03171207, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171207) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00568MF_03171207, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171207) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) .
BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_03171208) - 1) AS ?thisPositionOn63) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00568MF_03171205, 1, (STRLEN(?templateMotifCigarP00568MF_03171205) - STRLEN(REPLACE(?templateMotifCigarP00568MF_03171205, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionP00568206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1219) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00568MF_03171207, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171207) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00568MF_03171207, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171207) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), '')))), '[^-]', ''))) AS ?step2220) .
BIND(((?step2220 + ?targetMotifMatchRegionMatchBeginPositionMF_03171208) - 1) AS ?thisPositionOn64) .
BIND(?this AS ?pfs2t221) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, (?thisPositionOn64 - ?thisPositionOn63)) = 'GYPR')) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch226 faldo:location ?templateMotifSequenceMatchRegionP00568227 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00568229 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00568MF_03171222 .
?templateMotifSequenceMatchRegionP00568227 faldo:begin ?templateMotifSequenceMatchBeginP00568228 .
?templateMotifSequenceMatchBeginP00568228 faldo:position ?templateMotifSequenceMatchBeginPositionP00568223 ;
faldo:reference isoform:P00568-1 .
?templateMotifSequenceProfileAlignmentOperationP00568229 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
?targetMotifMatch230 faldo:location ?targetMotifMatchRegionMatch231 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03171233 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00568MF_03171224 .
?targetMotifMatchRegionMatch231 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03171232 .
?targetMotifMatchRegionMatchBeginMF_03171232 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03171225 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03171233 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00568MF_03171222, 1, (STRLEN(?templateMotifCigarP00568MF_03171222) - STRLEN(REPLACE(?templateMotifCigarP00568MF_03171222, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionP00568223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00568MF_03171224, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171224) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00568MF_03171224, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171224) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) .
BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_03171225) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs2t236) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch241 faldo:location ?templateMotifSequenceMatchRegionP00568242 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00568244 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00568MF_03171237 .
?templateMotifSequenceMatchRegionP00568242 faldo:begin ?templateMotifSequenceMatchBeginP00568243 .
?templateMotifSequenceMatchBeginP00568243 faldo:position ?templateMotifSequenceMatchBeginPositionP00568238 ;
faldo:reference isoform:P00568-1 .
?templateMotifSequenceProfileAlignmentOperationP00568244 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
?targetMotifMatch245 faldo:location ?targetMotifMatchRegionMatch246 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03171248 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00568MF_03171239 .
?targetMotifMatchRegionMatch246 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03171247 .
?targetMotifMatchRegionMatchBeginMF_03171247 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03171240 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03171248 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00568MF_03171237, 1, (STRLEN(?templateMotifCigarP00568MF_03171237) - STRLEN(REPLACE(?templateMotifCigarP00568MF_03171237, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionP00568238) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1249) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00568MF_03171239, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171239) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00568MF_03171239, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171239) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), '')))), '[^-]', ''))) AS ?step2250) .
BIND(((?step2250 + ?targetMotifMatchRegionMatchBeginPositionMF_03171240) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs2t251) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch256 faldo:location ?templateMotifSequenceMatchRegionP00568257 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00568259 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00568MF_03171252 .
?templateMotifSequenceMatchRegionP00568257 faldo:begin ?templateMotifSequenceMatchBeginP00568258 .
?templateMotifSequenceMatchBeginP00568258 faldo:position ?templateMotifSequenceMatchBeginPositionP00568253 ;
faldo:reference isoform:P00568-1 .
?templateMotifSequenceProfileAlignmentOperationP00568259 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
?targetMotifMatch260 faldo:location ?targetMotifMatchRegionMatch261 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03171263 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00568MF_03171254 .
?targetMotifMatchRegionMatch261 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03171262 .
?targetMotifMatchRegionMatchBeginMF_03171262 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03171255 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03171263 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00568MF_03171252, 1, (STRLEN(?templateMotifCigarP00568MF_03171252) - STRLEN(REPLACE(?templateMotifCigarP00568MF_03171252, CONCAT('^(?:-*[^-]){', STR(((101 - ?templateMotifSequenceMatchBeginPositionP00568253) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1264) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00568MF_03171254, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171254) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00568MF_03171254, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171254) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), '')))), '[^-]', ''))) AS ?step2265) .
BIND(((?step2265 + ?targetMotifMatchRegionMatchBeginPositionMF_03171255) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs2t266) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse82) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a80')) AS ?annotation80) .
BIND(?this AS ?pfs79) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch271 faldo:location ?templateMotifSequenceMatchRegionP00568272 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00568274 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00568MF_03171267 .
?templateMotifSequenceMatchRegionP00568272 faldo:begin ?templateMotifSequenceMatchBeginP00568273 .
?templateMotifSequenceMatchBeginP00568273 faldo:position ?templateMotifSequenceMatchBeginPositionP00568268 ;
faldo:reference isoform:P00568-1 .
?templateMotifSequenceProfileAlignmentOperationP00568274 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
?targetMotifMatch275 faldo:location ?targetMotifMatchRegionMatch276 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03171278 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00568MF_03171269 .
?targetMotifMatchRegionMatch276 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03171277 .
?targetMotifMatchRegionMatchBeginMF_03171277 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03171270 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03171278 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00568MF_03171267, 1, (STRLEN(?templateMotifCigarP00568MF_03171267) - STRLEN(REPLACE(?templateMotifCigarP00568MF_03171267, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionP00568268) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1279) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00568MF_03171269, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171269) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00568MF_03171269, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171269) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), '')))), '[^-]', ''))) AS ?step2280) .
BIND(((?step2280 + ?targetMotifMatchRegionMatchBeginPositionMF_03171270) - 1) AS ?thisPositionOn91) .
BIND(?thisPositionOn91 AS ?thisPositionOn92) .
BIND(?this AS ?pfs2t281) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse89) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch286 faldo:location ?templateMotifSequenceMatchRegionP00568287 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00568289 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00568MF_03171282 .
?templateMotifSequenceMatchRegionP00568287 faldo:begin ?templateMotifSequenceMatchBeginP00568288 .
?templateMotifSequenceMatchBeginP00568288 faldo:position ?templateMotifSequenceMatchBeginPositionP00568283 ;
faldo:reference isoform:P00568-1 .
?templateMotifSequenceProfileAlignmentOperationP00568289 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
?targetMotifMatch290 faldo:location ?targetMotifMatchRegionMatch291 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03171293 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00568MF_03171284 .
?targetMotifMatchRegionMatch291 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03171292 .
?targetMotifMatchRegionMatchBeginMF_03171292 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03171285 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03171293 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00568MF_03171282, 1, (STRLEN(?templateMotifCigarP00568MF_03171282) - STRLEN(REPLACE(?templateMotifCigarP00568MF_03171282, CONCAT('^(?:-*[^-]){', STR(((138 - ?templateMotifSequenceMatchBeginPositionP00568283) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1294) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00568MF_03171284, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171284) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00568MF_03171284, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171284) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171284, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1294), '}'), '')))), '[^-]', ''))) AS ?step2295) .
BIND(((?step2295 + ?targetMotifMatchRegionMatchBeginPositionMF_03171285) - 1) AS ?thisPositionOn98) .
BIND(?thisPositionOn98 AS ?thisPositionOn99) .
BIND(?this AS ?pfs2t296) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfsb95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfse96) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn98, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a94')) AS ?annotation94) .
BIND(?this AS ?pfs93) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch301 faldo:location ?templateMotifSequenceMatchRegionP00568302 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00568304 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00568MF_03171297 .
?templateMotifSequenceMatchRegionP00568302 faldo:begin ?templateMotifSequenceMatchBeginP00568303 .
?templateMotifSequenceMatchBeginP00568303 faldo:position ?templateMotifSequenceMatchBeginPositionP00568298 ;
faldo:reference isoform:P00568-1 .
?templateMotifSequenceProfileAlignmentOperationP00568304 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
?targetMotifMatch305 faldo:location ?targetMotifMatchRegionMatch306 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03171308 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00568MF_03171299 .
?targetMotifMatchRegionMatch306 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03171307 .
?targetMotifMatchRegionMatchBeginMF_03171307 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03171300 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03171308 edam:has_input signature:MF_03171 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00568MF_03171297, 1, (STRLEN(?templateMotifCigarP00568MF_03171297) - STRLEN(REPLACE(?templateMotifCigarP00568MF_03171297, CONCAT('^(?:-*[^-]){', STR(((149 - ?templateMotifSequenceMatchBeginPositionP00568298) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1309) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00568MF_03171299, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171299) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00568MF_03171299, 1, (STRLEN(?targetMotifMatchCigarP00568MF_03171299) - STRLEN(REPLACE(?targetMotifMatchCigarP00568MF_03171299, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1309), '}'), '')))), '[^-]', ''))) AS ?step2310) .
BIND(((?step2310 + ?targetMotifMatchRegionMatchBeginPositionMF_03171300) - 1) AS ?thisPositionOn105) .
BIND(?thisPositionOn105 AS ?thisPositionOn106) .
BIND(?this AS ?pfs2t311) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse103) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a101')) AS ?annotation101) .
BIND(?this AS ?pfs100) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag312) .
}
BIND(IF(BOUND(?tagacetyl), ?caseWithTag312, ?UNBOUND_VARIABLE) AS ?case7) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case8) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a9')) AS ?name9) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a10')) AS ?name10) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a11')) AS ?name11) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a12')) AS ?name12) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a13')) AS ?name13) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:7742 .
})) .
BIND(?this AS ?case14) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a15')) AS ?name15) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a16')) AS ?name16) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a17')) AS ?name17) .
BIND(URI(CONCAT(STR(?this), '#MF_03171a18')) AS ?name18) .
}
}
"xsd:string |
