| http://purl.uniprot.org/unirules/MF_04101#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:953368 up:source unirule:MF_04101 .
_:953369 up:source unirule:MF_04101 .
_:953370 up:source unirule:MF_04101 .
_:953371 up:source unirule:MF_04101 .
_:953372 up:source unirule:MF_04101 .
_:953373 up:source unirule:MF_04101 .
_:953374 up:source unirule:MF_04101 .
_:953375 up:source unirule:MF_04101 .
_:953376 up:source unirule:MF_04101 .
_:953377 up:source unirule:MF_04101 .
_:953378 up:source unirule:MF_04101 .
_:953379 up:source unirule:MF_04101 .
_:953380 up:source unirule:MF_04101 .
_:953381 up:source unirule:MF_04101 .
_:953382 up:source unirule:MF_04101 .
_:953383 up:source unirule:MF_04101 .
_:953384 up:source unirule:MF_04101 .
_:953385 up:source unirule:MF_04101 .
_:953386 up:source unirule:MF_04101 .
_:953387 up:source unirule:MF_04101 .
_:953388 up:source unirule:MF_04101 .
_:953389 up:source unirule:MF_04101 .
_:953390 up:source unirule:MF_04101 .
_:953391 up:source unirule:MF_04101 .
_:953392 up:source unirule:MF_04101 .
_:953393 up:source unirule:MF_04101 .
_:953394 up:source unirule:MF_04101 .
_:953395 up:source unirule:MF_04101 .
_:953396 up:source unirule:MF_04101 .
_:953397 up:source unirule:MF_04101 .
_:953398 up:source unirule:MF_04101 .
_:953399 up:source unirule:MF_04101 .
_:953400 up:source unirule:MF_04101 .
_:953401 up:source unirule:MF_04101 .
_:953402 up:source unirule:MF_04101 .
_:953403 up:source unirule:MF_04101 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation5 ;
up:classifiedWith GO:0000166 ,
GO:0003677 ,
GO:0003887 ,
GO:0008408 ,
keyword:1194 ,
keyword:235 ,
keyword:238 ,
keyword:239 ,
keyword:269 ,
keyword:378 ,
keyword:460 ,
keyword:479 ,
keyword:511 ,
keyword:540 ,
keyword:548 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.7.7' ,
'3.1.11.-' ;
up:fullName 'DNA-directed DNA polymerase' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment "Replicates viral genomic DNA. This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction." .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the DNA polymerase type-A family.' .
?pfs6 up:annotation ?annotation7 .
?annotation7 faldo:begin ?pfsb8 ;
faldo:end ?pfse9 ;
rdf:type up:Region_Annotation ;
rdfs:comment "3'-5'exonuclease" .
?pfsb8 faldo:position ?thisPositionOn10 ;
rdf:type faldo:ExactPosition .
?pfse9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Polymerase' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:18420 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:18420 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:18420 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:18420 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf chebi:18420 .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf chebi:18420 .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf chebi:18420 .
?pfs67 up:annotation ?annotation68 .
?annotation68 faldo:begin ?pfsb69 ;
faldo:end ?pfse70 ;
up:ligand ?ligand71 ;
rdf:type up:Binding_Site_Annotation .
?pfsb69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?ligand71 rdfs:subClassOf chebi:18420 .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
up:ligand ?ligand78 ;
rdf:type up:Binding_Site_Annotation .
?pfsb76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?ligand78 rdfs:subClassOf chebi:18420 .
?pfs81 up:annotation ?annotation82 .
?annotation82 faldo:begin ?pfsb83 ;
faldo:end ?pfse84 ;
up:ligand ?ligand85 ;
rdf:type up:Binding_Site_Annotation .
?pfsb83 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfse84 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?ligand85 rdfs:subClassOf ?molecule86 .
?molecule86 rdfs:label 'substrate' .
?pfs89 up:annotation ?annotation90 .
?annotation90 faldo:begin ?pfsb91 ;
faldo:end ?pfse92 ;
up:ligand ?ligand93 ;
rdf:type up:Binding_Site_Annotation .
?pfsb91 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?pfse92 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?ligand93 rdfs:subClassOf ?molecule94 .
?molecule94 rdfs:label 'substrate' .
?pfs97 up:annotation ?annotation98 .
?annotation98 faldo:begin ?pfsb99 ;
faldo:end ?pfse100 ;
up:ligand ?ligand101 ;
rdf:type up:Binding_Site_Annotation .
?pfsb99 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfse100 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
?ligand101 rdfs:subClassOf ?molecule102 .
?molecule102 rdfs:label 'substrate' .
?pfs105 up:annotation ?annotation106 .
?annotation106 faldo:begin ?pfsb107 ;
faldo:end ?pfse108 ;
up:ligand ?ligand109 ;
rdf:type up:Binding_Site_Annotation .
?pfsb107 faldo:position ?thisPositionOn111 ;
rdf:type faldo:ExactPosition .
?pfse108 faldo:position ?thisPositionOn112 ;
rdf:type faldo:ExactPosition .
?ligand109 rdfs:subClassOf ?molecule110 .
?molecule110 rdfs:label 'substrate' .
_:953404 a rdf:Statement ;
up:attribution _:953368 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:953405 a rdf:Statement ;
up:attribution _:953369 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:953406 a rdf:Statement ;
up:attribution _:953370 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:953407 a rdf:Statement ;
up:attribution _:953371 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:953408 a rdf:Statement ;
up:attribution _:953372 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:953409 a rdf:Statement ;
up:attribution _:953373 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:235 .
_:953410 a rdf:Statement ;
up:attribution _:953374 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:953411 a rdf:Statement ;
up:attribution _:953375 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:239 .
_:953412 a rdf:Statement ;
up:attribution _:953376 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:269 .
_:953413 a rdf:Statement ;
up:attribution _:953377 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:953414 a rdf:Statement ;
up:attribution _:953378 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:953415 a rdf:Statement ;
up:attribution _:953379 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:953416 a rdf:Statement ;
up:attribution _:953380 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:511 .
_:953417 a rdf:Statement ;
up:attribution _:953381 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:540 .
_:953418 a rdf:Statement ;
up:attribution _:953382 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:953419 a rdf:Statement ;
up:attribution _:953383 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:953420 a rdf:Statement ;
up:attribution _:953384 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1194 .
_:953421 a rdf:Statement ;
up:attribution _:953385 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008408 .
_:953422 a rdf:Statement ;
up:attribution _:953386 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:953423 a rdf:Statement ;
up:attribution _:953387 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003887 .
_:953424 a rdf:Statement ;
up:attribution _:953388 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000166 .
_:953425 a rdf:Statement ;
up:source unirule:MF_04101 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:953426 a rdf:Statement ;
up:attribution _:953389 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:953427 a rdf:Statement ;
up:source unirule:MF_04101 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:953428 a rdf:Statement ;
up:attribution _:953390 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:953429 a rdf:Statement ;
up:source unirule:MF_04101 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:953430 a rdf:Statement ;
up:attribution _:953391 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:953431 a rdf:Statement ;
up:source unirule:MF_04101 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:953432 a rdf:Statement ;
up:attribution _:953392 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:953433 a rdf:Statement ;
up:source unirule:MF_04101 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:953434 a rdf:Statement ;
up:attribution _:953393 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:953435 a rdf:Statement ;
up:source unirule:MF_04101 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:953436 a rdf:Statement ;
up:attribution _:953394 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:953437 a rdf:Statement ;
up:source unirule:MF_04101 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:953438 a rdf:Statement ;
up:attribution _:953395 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:953439 a rdf:Statement ;
up:source unirule:MF_04101 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:953440 a rdf:Statement ;
up:attribution _:953396 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:953441 a rdf:Statement ;
up:source unirule:MF_04101 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:953442 a rdf:Statement ;
up:attribution _:953397 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:953443 a rdf:Statement ;
up:source unirule:MF_04101 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:953444 a rdf:Statement ;
up:attribution _:953398 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:953445 a rdf:Statement ;
up:source unirule:MF_04101 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:953446 a rdf:Statement ;
up:attribution _:953399 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:953447 a rdf:Statement ;
up:source unirule:MF_04101 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:953448 a rdf:Statement ;
up:attribution _:953400 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:953449 a rdf:Statement ;
up:source unirule:MF_04101 ;
rdf:subject ?pfs89 ;
rdf:predicate up:annotation ;
rdf:object ?annotation90 .
_:953450 a rdf:Statement ;
up:attribution _:953401 ;
rdf:subject ?pfs89 ;
rdf:predicate up:annotation ;
rdf:object ?annotation90 .
_:953451 a rdf:Statement ;
up:source unirule:MF_04101 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:953452 a rdf:Statement ;
up:attribution _:953402 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:953453 a rdf:Statement ;
up:source unirule:MF_04101 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:953454 a rdf:Statement ;
up:attribution _:953403 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04101
#Rule MF_04101 Created by:? on:2016-06-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04101 .
?thisOrganism rdfs:subClassOf+ taxon:2731619 .
BIND(URI(CONCAT(STR(?this), '#MF_04101a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04101a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_04101a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_04101a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04101a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionP00581118 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581120 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00581MF_04101113 .
?templateMotifSequenceMatchRegionP00581118 faldo:begin ?templateMotifSequenceMatchBeginP00581119 .
?templateMotifSequenceMatchBeginP00581119 faldo:position ?templateMotifSequenceMatchBeginPositionP00581114 ;
faldo:reference isoform:P00581-1 .
?templateMotifSequenceProfileAlignmentOperationP00581120 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101124 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00581MF_04101115 .
?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101123 .
?targetMotifMatchRegionMatchBeginMF_04101123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101116 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04101124 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101113, 1, (STRLEN(?templateMotifCigarP00581MF_04101113) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101113, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP00581114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101115, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101115) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101115, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101115) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_04101116) - 1) AS ?thisPositionOn10) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101113, 1, (STRLEN(?templateMotifCigarP00581MF_04101113) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101113, CONCAT('^(?:-*[^-]){', STR(((187 - ?templateMotifSequenceMatchBeginPositionP00581114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101115, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101115) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101115, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101115) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) .
BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_04101116) - 1) AS ?thisPositionOn11) .
BIND(?this AS ?pfs1t129) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb8) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse9) .
FILTER ((BOUND(?thisPositionOn10) && BOUND(?thisPositionOn11))) .
BIND(URI(CONCAT(STR(?this), '#MF_04101a7')) AS ?annotation7) .
BIND(?this AS ?pfs6) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionP00581135 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581137 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00581MF_04101130 .
?templateMotifSequenceMatchRegionP00581135 faldo:begin ?templateMotifSequenceMatchBeginP00581136 .
?templateMotifSequenceMatchBeginP00581136 faldo:position ?templateMotifSequenceMatchBeginPositionP00581131 ;
faldo:reference isoform:P00581-1 .
?templateMotifSequenceProfileAlignmentOperationP00581137 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101141 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00581MF_04101132 .
?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101140 .
?targetMotifMatchRegionMatchBeginMF_04101140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101133 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04101141 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101130, 1, (STRLEN(?templateMotifCigarP00581MF_04101130) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101130, CONCAT('^(?:-*[^-]){', STR(((202 - ?templateMotifSequenceMatchBeginPositionP00581131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101132, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101132) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101132, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101132) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) .
BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_04101133) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((BOUND(?thisPositionOn16) && BOUND(?thisPositionOn17))) .
BIND(URI(CONCAT(STR(?this), '#MF_04101a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch149 faldo:location ?templateMotifSequenceMatchRegionP00581150 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581152 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00581MF_04101145 .
?templateMotifSequenceMatchRegionP00581150 faldo:begin ?templateMotifSequenceMatchBeginP00581151 .
?templateMotifSequenceMatchBeginP00581151 faldo:position ?templateMotifSequenceMatchBeginPositionP00581146 ;
faldo:reference isoform:P00581-1 .
?templateMotifSequenceProfileAlignmentOperationP00581152 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch153 faldo:location ?targetMotifMatchRegionMatch154 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101156 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00581MF_04101147 .
?targetMotifMatchRegionMatch154 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101155 .
?targetMotifMatchRegionMatchBeginMF_04101155 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101148 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04101156 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101145, 1, (STRLEN(?templateMotifCigarP00581MF_04101145) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101145, CONCAT('^(?:-*[^-]){', STR(((5 - ?templateMotifSequenceMatchBeginPositionP00581146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101147, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101147) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101147, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101147) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) .
BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_04101148) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t159) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04101a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionP00581165 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581167 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00581MF_04101160 .
?templateMotifSequenceMatchRegionP00581165 faldo:begin ?templateMotifSequenceMatchBeginP00581166 .
?templateMotifSequenceMatchBeginP00581166 faldo:position ?templateMotifSequenceMatchBeginPositionP00581161 ;
faldo:reference isoform:P00581-1 .
?templateMotifSequenceProfileAlignmentOperationP00581167 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101171 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00581MF_04101162 .
?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101170 .
?targetMotifMatchRegionMatchBeginMF_04101170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101163 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04101171 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101160, 1, (STRLEN(?templateMotifCigarP00581MF_04101160) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101160, CONCAT('^(?:-*[^-]){', STR(((5 - ?templateMotifSequenceMatchBeginPositionP00581161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101162, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101162) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101162, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101162) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) .
BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_04101163) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t174) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04101a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionP00581180 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581182 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00581MF_04101175 .
?templateMotifSequenceMatchRegionP00581180 faldo:begin ?templateMotifSequenceMatchBeginP00581181 .
?templateMotifSequenceMatchBeginP00581181 faldo:position ?templateMotifSequenceMatchBeginPositionP00581176 ;
faldo:reference isoform:P00581-1 .
?templateMotifSequenceProfileAlignmentOperationP00581182 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101186 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00581MF_04101177 .
?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101185 .
?targetMotifMatchRegionMatchBeginMF_04101185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101178 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04101186 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101175, 1, (STRLEN(?templateMotifCigarP00581MF_04101175) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101175, CONCAT('^(?:-*[^-]){', STR(((7 - ?templateMotifSequenceMatchBeginPositionP00581176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101177, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101177) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101177, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101177) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) .
BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_04101178) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t189) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_04101a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionP00581195 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581197 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00581MF_04101190 .
?templateMotifSequenceMatchRegionP00581195 faldo:begin ?templateMotifSequenceMatchBeginP00581196 .
?templateMotifSequenceMatchBeginP00581196 faldo:position ?templateMotifSequenceMatchBeginPositionP00581191 ;
faldo:reference isoform:P00581-1 .
?templateMotifSequenceProfileAlignmentOperationP00581197 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101201 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00581MF_04101192 .
?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101200 .
?targetMotifMatchRegionMatchBeginMF_04101200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101193 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04101201 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101190, 1, (STRLEN(?templateMotifCigarP00581MF_04101190) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101190, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionP00581191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101192, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101192) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101192, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101192) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_04101193) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04101a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionP00581210 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581212 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00581MF_04101205 .
?templateMotifSequenceMatchRegionP00581210 faldo:begin ?templateMotifSequenceMatchBeginP00581211 .
?templateMotifSequenceMatchBeginP00581211 faldo:position ?templateMotifSequenceMatchBeginPositionP00581206 ;
faldo:reference isoform:P00581-1 .
?templateMotifSequenceProfileAlignmentOperationP00581212 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101216 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00581MF_04101207 .
?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101215 .
?targetMotifMatchRegionMatchBeginMF_04101215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101208 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04101216 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101205, 1, (STRLEN(?templateMotifCigarP00581MF_04101205) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101205, CONCAT('^(?:-*[^-]){', STR(((475 - ?templateMotifSequenceMatchBeginPositionP00581206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101207, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101207) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101207, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101207) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) .
BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_04101208) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t219) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04101a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionP00581225 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581227 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00581MF_04101220 .
?templateMotifSequenceMatchRegionP00581225 faldo:begin ?templateMotifSequenceMatchBeginP00581226 .
?templateMotifSequenceMatchBeginP00581226 faldo:position ?templateMotifSequenceMatchBeginPositionP00581221 ;
faldo:reference isoform:P00581-1 .
?templateMotifSequenceProfileAlignmentOperationP00581227 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101231 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00581MF_04101222 .
?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101230 .
?targetMotifMatchRegionMatchBeginMF_04101230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101223 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04101231 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101220, 1, (STRLEN(?templateMotifCigarP00581MF_04101220) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101220, CONCAT('^(?:-*[^-]){', STR(((475 - ?templateMotifSequenceMatchBeginPositionP00581221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101222, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101222) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101222, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101222) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) .
BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_04101223) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t234) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04101a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch239 faldo:location ?templateMotifSequenceMatchRegionP00581240 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581242 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00581MF_04101235 .
?templateMotifSequenceMatchRegionP00581240 faldo:begin ?templateMotifSequenceMatchBeginP00581241 .
?templateMotifSequenceMatchBeginP00581241 faldo:position ?templateMotifSequenceMatchBeginPositionP00581236 ;
faldo:reference isoform:P00581-1 .
?templateMotifSequenceProfileAlignmentOperationP00581242 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch243 faldo:location ?targetMotifMatchRegionMatch244 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101246 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00581MF_04101237 .
?targetMotifMatchRegionMatch244 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101245 .
?targetMotifMatchRegionMatchBeginMF_04101245 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101238 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04101246 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101235, 1, (STRLEN(?templateMotifCigarP00581MF_04101235) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101235, CONCAT('^(?:-*[^-]){', STR(((476 - ?templateMotifSequenceMatchBeginPositionP00581236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1247) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101237, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101237) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101237, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101237) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), '')))), '[^-]', ''))) AS ?step2248) .
BIND(((?step2248 + ?targetMotifMatchRegionMatchBeginPositionMF_04101238) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs1t249) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1) = 'A')) .
BIND(URI(CONCAT(STR(?this), '#MF_04101a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch254 faldo:location ?templateMotifSequenceMatchRegionP00581255 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581257 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00581MF_04101250 .
?templateMotifSequenceMatchRegionP00581255 faldo:begin ?templateMotifSequenceMatchBeginP00581256 .
?templateMotifSequenceMatchBeginP00581256 faldo:position ?templateMotifSequenceMatchBeginPositionP00581251 ;
faldo:reference isoform:P00581-1 .
?templateMotifSequenceProfileAlignmentOperationP00581257 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch258 faldo:location ?targetMotifMatchRegionMatch259 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101261 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00581MF_04101252 .
?targetMotifMatchRegionMatch259 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101260 .
?targetMotifMatchRegionMatchBeginMF_04101260 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101253 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04101261 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101250, 1, (STRLEN(?templateMotifCigarP00581MF_04101250) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101250, CONCAT('^(?:-*[^-]){', STR(((654 - ?templateMotifSequenceMatchBeginPositionP00581251) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1262) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101252, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101252) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101252, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101252) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), '')))), '[^-]', ''))) AS ?step2263) .
BIND(((?step2263 + ?targetMotifMatchRegionMatchBeginPositionMF_04101253) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs1t264) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse70) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04101a68')) AS ?annotation68) .
BIND(?this AS ?pfs67) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch269 faldo:location ?templateMotifSequenceMatchRegionP00581270 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581272 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00581MF_04101265 .
?templateMotifSequenceMatchRegionP00581270 faldo:begin ?templateMotifSequenceMatchBeginP00581271 .
?templateMotifSequenceMatchBeginP00581271 faldo:position ?templateMotifSequenceMatchBeginPositionP00581266 ;
faldo:reference isoform:P00581-1 .
?templateMotifSequenceProfileAlignmentOperationP00581272 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch273 faldo:location ?targetMotifMatchRegionMatch274 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101276 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00581MF_04101267 .
?targetMotifMatchRegionMatch274 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101275 .
?targetMotifMatchRegionMatchBeginMF_04101275 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101268 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04101276 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101265, 1, (STRLEN(?templateMotifCigarP00581MF_04101265) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101265, CONCAT('^(?:-*[^-]){', STR(((654 - ?templateMotifSequenceMatchBeginPositionP00581266) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1277) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101267, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101267) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101267, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101267) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), '')))), '[^-]', ''))) AS ?step2278) .
BIND(((?step2278 + ?targetMotifMatchRegionMatchBeginPositionMF_04101268) - 1) AS ?thisPositionOn79) .
BIND(?thisPositionOn79 AS ?thisPositionOn80) .
BIND(?this AS ?pfs1t279) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse77) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04101a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch284 faldo:location ?templateMotifSequenceMatchRegionP00581285 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581287 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00581MF_04101280 .
?templateMotifSequenceMatchRegionP00581285 faldo:begin ?templateMotifSequenceMatchBeginP00581286 .
?templateMotifSequenceMatchBeginP00581286 faldo:position ?templateMotifSequenceMatchBeginPositionP00581281 ;
faldo:reference isoform:P00581-1 .
?templateMotifSequenceProfileAlignmentOperationP00581287 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch288 faldo:location ?targetMotifMatchRegionMatch289 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101291 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00581MF_04101282 .
?targetMotifMatchRegionMatch289 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101290 .
?targetMotifMatchRegionMatchBeginMF_04101290 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101283 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04101291 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101280, 1, (STRLEN(?templateMotifCigarP00581MF_04101280) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101280, CONCAT('^(?:-*[^-]){', STR(((506 - ?templateMotifSequenceMatchBeginPositionP00581281) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1292) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101282, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101282) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101282, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101282) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), '')))), '[^-]', ''))) AS ?step2293) .
BIND(((?step2293 + ?targetMotifMatchRegionMatchBeginPositionMF_04101283) - 1) AS ?thisPositionOn87) .
BIND(?thisPositionOn87 AS ?thisPositionOn88) .
BIND(?this AS ?pfs1t294) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse84) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_04101a82')) AS ?annotation82) .
BIND(?this AS ?pfs81) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch299 faldo:location ?templateMotifSequenceMatchRegionP00581300 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581302 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00581MF_04101295 .
?templateMotifSequenceMatchRegionP00581300 faldo:begin ?templateMotifSequenceMatchBeginP00581301 .
?templateMotifSequenceMatchBeginP00581301 faldo:position ?templateMotifSequenceMatchBeginPositionP00581296 ;
faldo:reference isoform:P00581-1 .
?templateMotifSequenceProfileAlignmentOperationP00581302 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch303 faldo:location ?targetMotifMatchRegionMatch304 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101306 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00581MF_04101297 .
?targetMotifMatchRegionMatch304 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101305 .
?targetMotifMatchRegionMatchBeginMF_04101305 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101298 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04101306 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101295, 1, (STRLEN(?templateMotifCigarP00581MF_04101295) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101295, CONCAT('^(?:-*[^-]){', STR(((518 - ?templateMotifSequenceMatchBeginPositionP00581296) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1307) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101297, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101297) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101297, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101297) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), '')))), '[^-]', ''))) AS ?step2308) .
BIND(((?step2308 + ?targetMotifMatchRegionMatchBeginPositionMF_04101298) - 1) AS ?thisPositionOn95) .
BIND(?thisPositionOn95 AS ?thisPositionOn96) .
BIND(?this AS ?pfs1t309) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfsb91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfse92) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn95, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_04101a90')) AS ?annotation90) .
BIND(?this AS ?pfs89) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch314 faldo:location ?templateMotifSequenceMatchRegionP00581315 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581317 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00581MF_04101310 .
?templateMotifSequenceMatchRegionP00581315 faldo:begin ?templateMotifSequenceMatchBeginP00581316 .
?templateMotifSequenceMatchBeginP00581316 faldo:position ?templateMotifSequenceMatchBeginPositionP00581311 ;
faldo:reference isoform:P00581-1 .
?templateMotifSequenceProfileAlignmentOperationP00581317 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch318 faldo:location ?targetMotifMatchRegionMatch319 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101321 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00581MF_04101312 .
?targetMotifMatchRegionMatch319 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101320 .
?targetMotifMatchRegionMatchBeginMF_04101320 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101313 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04101321 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101310, 1, (STRLEN(?templateMotifCigarP00581MF_04101310) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101310, CONCAT('^(?:-*[^-]){', STR(((522 - ?templateMotifSequenceMatchBeginPositionP00581311) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1322) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101312, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101312) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1322), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101312, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101312) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1322), '}'), '')))), '[^-]', ''))) AS ?step2323) .
BIND(((?step2323 + ?targetMotifMatchRegionMatchBeginPositionMF_04101313) - 1) AS ?thisPositionOn103) .
BIND(?thisPositionOn103 AS ?thisPositionOn104) .
BIND(?this AS ?pfs1t324) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse100) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn103, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_04101a98')) AS ?annotation98) .
BIND(?this AS ?pfs97) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch329 faldo:location ?templateMotifSequenceMatchRegionP00581330 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00581332 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00581MF_04101325 .
?templateMotifSequenceMatchRegionP00581330 faldo:begin ?templateMotifSequenceMatchBeginP00581331 .
?templateMotifSequenceMatchBeginP00581331 faldo:position ?templateMotifSequenceMatchBeginPositionP00581326 ;
faldo:reference isoform:P00581-1 .
?templateMotifSequenceProfileAlignmentOperationP00581332 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
?targetMotifMatch333 faldo:location ?targetMotifMatchRegionMatch334 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04101336 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00581MF_04101327 .
?targetMotifMatchRegionMatch334 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04101335 .
?targetMotifMatchRegionMatchBeginMF_04101335 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04101328 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04101336 edam:has_input signature:MF_04101 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00581MF_04101325, 1, (STRLEN(?templateMotifCigarP00581MF_04101325) - STRLEN(REPLACE(?templateMotifCigarP00581MF_04101325, CONCAT('^(?:-*[^-]){', STR(((526 - ?templateMotifSequenceMatchBeginPositionP00581326) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1337) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00581MF_04101327, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101327) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1337), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00581MF_04101327, 1, (STRLEN(?targetMotifMatchCigarP00581MF_04101327) - STRLEN(REPLACE(?targetMotifMatchCigarP00581MF_04101327, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1337), '}'), '')))), '[^-]', ''))) AS ?step2338) .
BIND(((?step2338 + ?targetMotifMatchRegionMatchBeginPositionMF_04101328) - 1) AS ?thisPositionOn111) .
BIND(?thisPositionOn111 AS ?thisPositionOn112) .
BIND(?this AS ?pfs1t339) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfsb107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfse108) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn111, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_04101a106')) AS ?annotation106) .
BIND(?this AS ?pfs105) .
}
}
"xsd:string |
