| http://purl.uniprot.org/unirules/MF_00210#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:88222 up:source unirule:MF_00210 .
_:88223 up:source unirule:MF_00210 .
_:88224 up:source unirule:MF_00210 .
_:88225 up:source unirule:MF_00210 .
_:88226 up:source unirule:MF_00210 .
_:88227 up:source unirule:MF_00210 .
_:88228 up:source unirule:MF_00210 .
_:88229 up:source unirule:MF_00210 .
_:88230 up:source unirule:MF_00210 .
_:88231 up:source unirule:MF_00210 .
_:88232 up:source unirule:MF_00210 .
_:88233 up:source unirule:MF_00210 .
_:88234 up:source unirule:MF_00210 .
_:88235 up:source unirule:MF_00210 .
_:88236 up:source unirule:MF_00210 .
_:88237 up:source unirule:MF_00210 .
_:88238 up:source unirule:MF_00210 .
_:88239 up:source unirule:MF_00210 .
_:88240 up:source unirule:MF_00210 .
_:88241 up:source unirule:MF_00210 .
_:88242 up:source unirule:MF_00210 .
_:88243 up:source unirule:MF_00210 .
_:88244 up:source unirule:MF_00210 .
_:88245 up:source unirule:MF_00210 .
_:88246 up:source unirule:MF_00210 .
_:88247 up:source unirule:MF_00210 .
_:88248 up:source unirule:MF_00210 .
_:88249 up:source unirule:MF_00210 .
_:88250 up:source unirule:MF_00210 .
_:88251 up:source unirule:MF_00210 .
_:88252 up:source unirule:MF_00210 .
_:88253 up:source unirule:MF_00210 .
_:88254 up:source unirule:MF_00210 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0003866 ,
GO:0005737 ,
GO:0009423 ,
keyword:28 ,
keyword:57 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.5.1.19' ;
up:fullName '3-phosphoshikimate 1-carboxyvinyltransferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName '5-enolpyruvylshikimate-3-phosphate synthase' ;
up:shortName 'EPSP synthase' ,
'EPSPS' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'aroA' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the EPSP synthase family.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:145989 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:58702 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:145989 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:145989 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf chebi:58702 .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf chebi:58702 .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
up:ligand ?ligand64 ;
rdf:type up:Binding_Site_Annotation .
?pfsb62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?ligand64 rdfs:subClassOf chebi:145989 .
?pfs67 up:annotation ?annotation68 .
?annotation68 faldo:begin ?pfsb69 ;
faldo:end ?pfse70 ;
up:ligand ?ligand71 ;
rdf:type up:Binding_Site_Annotation .
?pfsb69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?ligand71 rdfs:subClassOf chebi:145989 .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
up:ligand ?ligand78 ;
rdf:type up:Binding_Site_Annotation .
?pfsb76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?ligand78 rdfs:subClassOf chebi:145989 .
?pfs81 up:annotation ?annotation82 .
?annotation82 faldo:begin ?pfsb83 ;
faldo:end ?pfse84 ;
up:ligand ?ligand85 ;
rdf:type up:Binding_Site_Annotation .
?pfsb83 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfse84 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?ligand85 rdfs:subClassOf chebi:58702 .
?pfs88 up:annotation ?annotation89 .
?annotation89 faldo:begin ?pfsb90 ;
faldo:end ?pfse91 ;
up:ligand ?ligand92 ;
rdf:type up:Binding_Site_Annotation .
?pfsb90 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?pfse91 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?ligand92 rdfs:subClassOf chebi:145989 .
?pfs95 up:annotation ?annotation96 .
?annotation96 faldo:begin ?pfsb97 ;
faldo:end ?pfse98 ;
up:ligand ?ligand99 ;
rdf:type up:Binding_Site_Annotation .
?pfsb97 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?pfse98 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?ligand99 rdfs:subClassOf chebi:145989 .
?pfs102 up:annotation ?annotation103 .
?annotation103 faldo:begin ?pfsb104 ;
faldo:end ?pfse105 ;
up:ligand ?ligand106 ;
rdf:type up:Binding_Site_Annotation .
?pfsb104 faldo:position ?thisPositionOn107 ;
rdf:type faldo:ExactPosition .
?pfse105 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?ligand106 rdfs:subClassOf chebi:145989 .
?pfs109 up:annotation ?annotation110 .
?annotation110 faldo:begin ?pfsb111 ;
faldo:end ?pfse112 ;
up:ligand ?ligand113 ;
rdf:type up:Binding_Site_Annotation .
?pfsb111 faldo:position ?thisPositionOn114 ;
rdf:type faldo:ExactPosition .
?pfse112 faldo:position ?thisPositionOn115 ;
rdf:type faldo:ExactPosition .
?ligand113 rdfs:subClassOf chebi:145989 .
?pfs116 up:annotation ?annotation117 .
?annotation117 faldo:begin ?pfsb118 ;
faldo:end ?pfse119 ;
up:ligand ?ligand120 ;
rdf:type up:Binding_Site_Annotation .
?pfsb118 faldo:position ?thisPositionOn121 ;
rdf:type faldo:ExactPosition .
?pfse119 faldo:position ?thisPositionOn122 ;
rdf:type faldo:ExactPosition .
?ligand120 rdfs:subClassOf chebi:58702 .
?pfs123 up:annotation ?annotation124 .
?annotation124 faldo:begin ?pfsb125 ;
faldo:end ?pfse126 ;
up:ligand ?ligand127 ;
rdf:type up:Binding_Site_Annotation .
?pfsb125 faldo:position ?thisPositionOn128 ;
rdf:type faldo:ExactPosition .
?pfse126 faldo:position ?thisPositionOn129 ;
rdf:type faldo:ExactPosition .
?ligand127 rdfs:subClassOf chebi:58702 .
?pfs130 up:annotation ?annotation131 .
?annotation131 faldo:begin ?pfsb132 ;
faldo:end ?pfse133 ;
up:ligand ?ligand134 ;
rdf:type up:Binding_Site_Annotation .
?pfsb132 faldo:position ?thisPositionOn135 ;
rdf:type faldo:ExactPosition .
?pfse133 faldo:position ?thisPositionOn136 ;
rdf:type faldo:ExactPosition .
?ligand134 rdfs:subClassOf chebi:58702 .
_:88255 a rdf:Statement ;
up:attribution _:88222 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:88256 a rdf:Statement ;
up:attribution _:88223 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:88257 a rdf:Statement ;
up:attribution _:88224 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:88258 a rdf:Statement ;
up:attribution _:88225 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:88259 a rdf:Statement ;
up:attribution _:88226 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:88260 a rdf:Statement ;
up:attribution _:88227 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:88261 a rdf:Statement ;
up:attribution _:88228 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:88262 a rdf:Statement ;
up:attribution _:88229 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:88263 a rdf:Statement ;
up:attribution _:88230 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:88264 a rdf:Statement ;
up:attribution _:88231 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:57 .
_:88265 a rdf:Statement ;
up:attribution _:88232 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:88266 a rdf:Statement ;
up:attribution _:88233 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:88267 a rdf:Statement ;
up:attribution _:88234 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003866 .
_:88268 a rdf:Statement ;
up:attribution _:88235 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009423 .
_:88269 a rdf:Statement ;
up:attribution _:88236 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:88270 a rdf:Statement ;
up:source unirule:MF_00210 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:88271 a rdf:Statement ;
up:attribution _:88237 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:88272 a rdf:Statement ;
up:source unirule:MF_00210 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:88273 a rdf:Statement ;
up:attribution _:88238 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:88274 a rdf:Statement ;
up:source unirule:MF_00210 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:88275 a rdf:Statement ;
up:attribution _:88239 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:88276 a rdf:Statement ;
up:source unirule:MF_00210 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:88277 a rdf:Statement ;
up:attribution _:88240 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:88278 a rdf:Statement ;
up:source unirule:MF_00210 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:88279 a rdf:Statement ;
up:attribution _:88241 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:88280 a rdf:Statement ;
up:source unirule:MF_00210 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:88281 a rdf:Statement ;
up:attribution _:88242 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:88282 a rdf:Statement ;
up:source unirule:MF_00210 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:88283 a rdf:Statement ;
up:attribution _:88243 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:88284 a rdf:Statement ;
up:source unirule:MF_00210 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:88285 a rdf:Statement ;
up:attribution _:88244 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:88286 a rdf:Statement ;
up:source unirule:MF_00210 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:88287 a rdf:Statement ;
up:attribution _:88245 ;
rdf:subject ?pfs67 ;
rdf:predicate up:annotation ;
rdf:object ?annotation68 .
_:88288 a rdf:Statement ;
up:source unirule:MF_00210 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:88289 a rdf:Statement ;
up:attribution _:88246 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:88290 a rdf:Statement ;
up:source unirule:MF_00210 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:88291 a rdf:Statement ;
up:attribution _:88247 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:88292 a rdf:Statement ;
up:source unirule:MF_00210 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:88293 a rdf:Statement ;
up:attribution _:88248 ;
rdf:subject ?pfs88 ;
rdf:predicate up:annotation ;
rdf:object ?annotation89 .
_:88294 a rdf:Statement ;
up:source unirule:MF_00210 ;
rdf:subject ?pfs95 ;
rdf:predicate up:annotation ;
rdf:object ?annotation96 .
_:88295 a rdf:Statement ;
up:attribution _:88249 ;
rdf:subject ?pfs95 ;
rdf:predicate up:annotation ;
rdf:object ?annotation96 .
_:88296 a rdf:Statement ;
up:source unirule:MF_00210 ;
rdf:subject ?pfs102 ;
rdf:predicate up:annotation ;
rdf:object ?annotation103 .
_:88297 a rdf:Statement ;
up:attribution _:88250 ;
rdf:subject ?pfs102 ;
rdf:predicate up:annotation ;
rdf:object ?annotation103 .
_:88298 a rdf:Statement ;
up:source unirule:MF_00210 ;
rdf:subject ?pfs109 ;
rdf:predicate up:annotation ;
rdf:object ?annotation110 .
_:88299 a rdf:Statement ;
up:attribution _:88251 ;
rdf:subject ?pfs109 ;
rdf:predicate up:annotation ;
rdf:object ?annotation110 .
_:88300 a rdf:Statement ;
up:source unirule:MF_00210 ;
rdf:subject ?pfs116 ;
rdf:predicate up:annotation ;
rdf:object ?annotation117 .
_:88301 a rdf:Statement ;
up:attribution _:88252 ;
rdf:subject ?pfs116 ;
rdf:predicate up:annotation ;
rdf:object ?annotation117 .
_:88302 a rdf:Statement ;
up:source unirule:MF_00210 ;
rdf:subject ?pfs123 ;
rdf:predicate up:annotation ;
rdf:object ?annotation124 .
_:88303 a rdf:Statement ;
up:attribution _:88253 ;
rdf:subject ?pfs123 ;
rdf:predicate up:annotation ;
rdf:object ?annotation124 .
_:88304 a rdf:Statement ;
up:source unirule:MF_00210 ;
rdf:subject ?pfs130 ;
rdf:predicate up:annotation ;
rdf:object ?annotation131 .
_:88305 a rdf:Statement ;
up:attribution _:88254 ;
rdf:subject ?pfs130 ;
rdf:predicate up:annotation ;
rdf:object ?annotation131 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00210
#Rule MF_00210 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-03-12
VALUES ?supertaxon137 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00210 .
?thisOrganism rdfs:subClassOf+ ?supertaxon137 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03143 .
})) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch142 faldo:location ?templateMotifSequenceMatchRegionP0A6D3143 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D3145 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D3MF_00210138 .
?templateMotifSequenceMatchRegionP0A6D3143 faldo:begin ?templateMotifSequenceMatchBeginP0A6D3144 .
?templateMotifSequenceMatchBeginP0A6D3144 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D3139 ;
faldo:reference isoform:P0A6D3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D3145 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch146 faldo:location ?targetMotifMatchRegionMatch147 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00210149 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D3MF_00210140 .
?targetMotifMatchRegionMatch147 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00210148 .
?targetMotifMatchRegionMatchBeginMF_00210148 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00210141 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00210149 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D3MF_00210138, 1, (STRLEN(?templateMotifCigarP0A6D3MF_00210138) - STRLEN(REPLACE(?templateMotifCigarP0A6D3MF_00210138, CONCAT('^(?:-*[^-]){', STR(((313 - ?templateMotifSequenceMatchBeginPositionP0A6D3139) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210140, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210140) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210140, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210140) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210140, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_00210141) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionP0A6D3158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D3160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D3MF_00210153 .
?templateMotifSequenceMatchRegionP0A6D3158 faldo:begin ?templateMotifSequenceMatchBeginP0A6D3159 .
?templateMotifSequenceMatchBeginP0A6D3159 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D3154 ;
faldo:reference isoform:P0A6D3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D3160 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00210164 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D3MF_00210155 .
?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00210163 .
?targetMotifMatchRegionMatchBeginMF_00210163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00210156 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00210164 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D3MF_00210153, 1, (STRLEN(?templateMotifCigarP0A6D3MF_00210153) - STRLEN(REPLACE(?templateMotifCigarP0A6D3MF_00210153, CONCAT('^(?:-*[^-]){', STR(((22 - ?templateMotifSequenceMatchBeginPositionP0A6D3154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210155, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210155) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210155, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210155) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_00210156) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t167) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch172 faldo:location ?templateMotifSequenceMatchRegionP0A6D3173 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D3175 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D3MF_00210168 .
?templateMotifSequenceMatchRegionP0A6D3173 faldo:begin ?templateMotifSequenceMatchBeginP0A6D3174 .
?templateMotifSequenceMatchBeginP0A6D3174 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D3169 ;
faldo:reference isoform:P0A6D3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D3175 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch176 faldo:location ?targetMotifMatchRegionMatch177 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00210179 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D3MF_00210170 .
?targetMotifMatchRegionMatch177 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00210178 .
?targetMotifMatchRegionMatchBeginMF_00210178 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00210171 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00210179 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D3MF_00210168, 1, (STRLEN(?templateMotifCigarP0A6D3MF_00210168) - STRLEN(REPLACE(?templateMotifCigarP0A6D3MF_00210168, CONCAT('^(?:-*[^-]){', STR(((22 - ?templateMotifSequenceMatchBeginPositionP0A6D3169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210170, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210170) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210170, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210170) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) .
BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_00210171) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch187 faldo:location ?templateMotifSequenceMatchRegionP0A6D3188 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D3190 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D3MF_00210183 .
?templateMotifSequenceMatchRegionP0A6D3188 faldo:begin ?templateMotifSequenceMatchBeginP0A6D3189 .
?templateMotifSequenceMatchBeginP0A6D3189 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D3184 ;
faldo:reference isoform:P0A6D3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D3190 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch191 faldo:location ?targetMotifMatchRegionMatch192 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00210194 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D3MF_00210185 .
?targetMotifMatchRegionMatch192 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00210193 .
?targetMotifMatchRegionMatchBeginMF_00210193 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00210186 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00210194 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D3MF_00210183, 1, (STRLEN(?templateMotifCigarP0A6D3MF_00210183) - STRLEN(REPLACE(?templateMotifCigarP0A6D3MF_00210183, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionP0A6D3184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210185, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210185) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210185, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210185) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210185, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1195), '}'), '')))), '[^-]', ''))) AS ?step2196) .
BIND(((?step2196 + ?targetMotifMatchRegionMatchBeginPositionMF_00210186) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t197) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch202 faldo:location ?templateMotifSequenceMatchRegionP0A6D3203 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D3205 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D3MF_00210198 .
?templateMotifSequenceMatchRegionP0A6D3203 faldo:begin ?templateMotifSequenceMatchBeginP0A6D3204 .
?templateMotifSequenceMatchBeginP0A6D3204 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D3199 ;
faldo:reference isoform:P0A6D3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D3205 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch206 faldo:location ?targetMotifMatchRegionMatch207 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00210209 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D3MF_00210200 .
?targetMotifMatchRegionMatch207 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00210208 .
?targetMotifMatchRegionMatchBeginMF_00210208 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00210201 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00210209 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D3MF_00210198, 1, (STRLEN(?templateMotifCigarP0A6D3MF_00210198) - STRLEN(REPLACE(?templateMotifCigarP0A6D3MF_00210198, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionP0A6D3199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1210) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210200, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210200) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210200, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210200) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210200, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1210), '}'), '')))), '[^-]', ''))) AS ?step2211) .
BIND(((?step2211 + ?targetMotifMatchRegionMatchBeginPositionMF_00210201) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t212) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch217 faldo:location ?templateMotifSequenceMatchRegionP0A6D3218 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D3220 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D3MF_00210213 .
?templateMotifSequenceMatchRegionP0A6D3218 faldo:begin ?templateMotifSequenceMatchBeginP0A6D3219 .
?templateMotifSequenceMatchBeginP0A6D3219 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D3214 ;
faldo:reference isoform:P0A6D3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D3220 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch221 faldo:location ?targetMotifMatchRegionMatch222 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00210224 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D3MF_00210215 .
?targetMotifMatchRegionMatch222 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00210223 .
?targetMotifMatchRegionMatchBeginMF_00210223 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00210216 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00210224 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D3MF_00210213, 1, (STRLEN(?templateMotifCigarP0A6D3MF_00210213) - STRLEN(REPLACE(?templateMotifCigarP0A6D3MF_00210213, CONCAT('^(?:-*[^-]){', STR(((96 - ?templateMotifSequenceMatchBeginPositionP0A6D3214) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1225) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210215, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210215) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210215, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210215) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210215, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1225), '}'), '')))), '[^-]', ''))) AS ?step2226) .
BIND(((?step2226 + ?targetMotifMatchRegionMatchBeginPositionMF_00210216) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t227) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch232 faldo:location ?templateMotifSequenceMatchRegionP0A6D3233 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D3235 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D3MF_00210228 .
?templateMotifSequenceMatchRegionP0A6D3233 faldo:begin ?templateMotifSequenceMatchBeginP0A6D3234 .
?templateMotifSequenceMatchBeginP0A6D3234 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D3229 ;
faldo:reference isoform:P0A6D3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D3235 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch236 faldo:location ?targetMotifMatchRegionMatch237 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00210239 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D3MF_00210230 .
?targetMotifMatchRegionMatch237 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00210238 .
?targetMotifMatchRegionMatchBeginMF_00210238 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00210231 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00210239 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D3MF_00210228, 1, (STRLEN(?templateMotifCigarP0A6D3MF_00210228) - STRLEN(REPLACE(?templateMotifCigarP0A6D3MF_00210228, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP0A6D3229) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1240) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210230, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210230) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210230, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210230) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210230, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1240), '}'), '')))), '[^-]', ''))) AS ?step2241) .
BIND(((?step2241 + ?targetMotifMatchRegionMatchBeginPositionMF_00210231) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t242) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch247 faldo:location ?templateMotifSequenceMatchRegionP0A6D3248 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D3250 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D3MF_00210243 .
?templateMotifSequenceMatchRegionP0A6D3248 faldo:begin ?templateMotifSequenceMatchBeginP0A6D3249 .
?templateMotifSequenceMatchBeginP0A6D3249 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D3244 ;
faldo:reference isoform:P0A6D3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D3250 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch251 faldo:location ?targetMotifMatchRegionMatch252 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00210254 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D3MF_00210245 .
?targetMotifMatchRegionMatch252 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00210253 .
?targetMotifMatchRegionMatchBeginMF_00210253 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00210246 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00210254 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D3MF_00210243, 1, (STRLEN(?templateMotifCigarP0A6D3MF_00210243) - STRLEN(REPLACE(?templateMotifCigarP0A6D3MF_00210243, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionP0A6D3244) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1255) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210245, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210245) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210245, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210245) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1255), '}'), '')))), '[^-]', ''))) AS ?step2256) .
BIND(((?step2256 + ?targetMotifMatchRegionMatchBeginPositionMF_00210246) - 1) AS ?thisPositionOn65) .
BIND(?thisPositionOn65 AS ?thisPositionOn66) .
BIND(?this AS ?pfs1t257) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfse63) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn65, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch262 faldo:location ?templateMotifSequenceMatchRegionP0A6D3263 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D3265 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D3MF_00210258 .
?templateMotifSequenceMatchRegionP0A6D3263 faldo:begin ?templateMotifSequenceMatchBeginP0A6D3264 .
?templateMotifSequenceMatchBeginP0A6D3264 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D3259 ;
faldo:reference isoform:P0A6D3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D3265 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch266 faldo:location ?targetMotifMatchRegionMatch267 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00210269 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D3MF_00210260 .
?targetMotifMatchRegionMatch267 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00210268 .
?targetMotifMatchRegionMatchBeginMF_00210268 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00210261 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00210269 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D3MF_00210258, 1, (STRLEN(?templateMotifCigarP0A6D3MF_00210258) - STRLEN(REPLACE(?templateMotifCigarP0A6D3MF_00210258, CONCAT('^(?:-*[^-]){', STR(((170 - ?templateMotifSequenceMatchBeginPositionP0A6D3259) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1270) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210260, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210260) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210260, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210260) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), '')))), '[^-]', ''))) AS ?step2271) .
BIND(((?step2271 + ?targetMotifMatchRegionMatchBeginPositionMF_00210261) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs1t272) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse70) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a68')) AS ?annotation68) .
BIND(?this AS ?pfs67) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch277 faldo:location ?templateMotifSequenceMatchRegionP0A6D3278 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D3280 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D3MF_00210273 .
?templateMotifSequenceMatchRegionP0A6D3278 faldo:begin ?templateMotifSequenceMatchBeginP0A6D3279 .
?templateMotifSequenceMatchBeginP0A6D3279 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D3274 ;
faldo:reference isoform:P0A6D3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D3280 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch281 faldo:location ?targetMotifMatchRegionMatch282 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00210284 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D3MF_00210275 .
?targetMotifMatchRegionMatch282 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00210283 .
?targetMotifMatchRegionMatchBeginMF_00210283 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00210276 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00210284 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D3MF_00210273, 1, (STRLEN(?templateMotifCigarP0A6D3MF_00210273) - STRLEN(REPLACE(?templateMotifCigarP0A6D3MF_00210273, CONCAT('^(?:-*[^-]){', STR(((171 - ?templateMotifSequenceMatchBeginPositionP0A6D3274) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1285) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210275, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210275) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1285), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210275, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210275) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1285), '}'), '')))), '[^-]', ''))) AS ?step2286) .
BIND(((?step2286 + ?targetMotifMatchRegionMatchBeginPositionMF_00210276) - 1) AS ?thisPositionOn79) .
BIND(?thisPositionOn79 AS ?thisPositionOn80) .
BIND(?this AS ?pfs1t287) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse77) .
FILTER (REGEX('[QN]', SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch292 faldo:location ?templateMotifSequenceMatchRegionP0A6D3293 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D3295 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D3MF_00210288 .
?templateMotifSequenceMatchRegionP0A6D3293 faldo:begin ?templateMotifSequenceMatchBeginP0A6D3294 .
?templateMotifSequenceMatchBeginP0A6D3294 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D3289 ;
faldo:reference isoform:P0A6D3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D3295 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch296 faldo:location ?targetMotifMatchRegionMatch297 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00210299 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D3MF_00210290 .
?targetMotifMatchRegionMatch297 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00210298 .
?targetMotifMatchRegionMatchBeginMF_00210298 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00210291 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00210299 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D3MF_00210288, 1, (STRLEN(?templateMotifCigarP0A6D3MF_00210288) - STRLEN(REPLACE(?templateMotifCigarP0A6D3MF_00210288, CONCAT('^(?:-*[^-]){', STR(((171 - ?templateMotifSequenceMatchBeginPositionP0A6D3289) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1300) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210290, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210290) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210290, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1300), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210290, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210290) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210290, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1300), '}'), '')))), '[^-]', ''))) AS ?step2301) .
BIND(((?step2301 + ?targetMotifMatchRegionMatchBeginPositionMF_00210291) - 1) AS ?thisPositionOn86) .
BIND(?thisPositionOn86 AS ?thisPositionOn87) .
BIND(?this AS ?pfs1t302) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfsb83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfse84) .
FILTER (REGEX('[QN]', SUBSTR(?thisSequenceValue, ?thisPositionOn86, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a82')) AS ?annotation82) .
BIND(?this AS ?pfs81) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch307 faldo:location ?templateMotifSequenceMatchRegionP0A6D3308 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D3310 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D3MF_00210303 .
?templateMotifSequenceMatchRegionP0A6D3308 faldo:begin ?templateMotifSequenceMatchBeginP0A6D3309 .
?templateMotifSequenceMatchBeginP0A6D3309 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D3304 ;
faldo:reference isoform:P0A6D3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D3310 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch311 faldo:location ?targetMotifMatchRegionMatch312 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00210314 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D3MF_00210305 .
?targetMotifMatchRegionMatch312 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00210313 .
?targetMotifMatchRegionMatchBeginMF_00210313 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00210306 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00210314 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D3MF_00210303, 1, (STRLEN(?templateMotifCigarP0A6D3MF_00210303) - STRLEN(REPLACE(?templateMotifCigarP0A6D3MF_00210303, CONCAT('^(?:-*[^-]){', STR(((197 - ?templateMotifSequenceMatchBeginPositionP0A6D3304) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1315) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210305, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210305) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210305, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1315), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210305, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210305) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210305, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1315), '}'), '')))), '[^-]', ''))) AS ?step2316) .
BIND(((?step2316 + ?targetMotifMatchRegionMatchBeginPositionMF_00210306) - 1) AS ?thisPositionOn93) .
BIND(?thisPositionOn93 AS ?thisPositionOn94) .
BIND(?this AS ?pfs1t317) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfsb90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfse91) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn93, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a89')) AS ?annotation89) .
BIND(?this AS ?pfs88) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch322 faldo:location ?templateMotifSequenceMatchRegionP0A6D3323 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D3325 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D3MF_00210318 .
?templateMotifSequenceMatchRegionP0A6D3323 faldo:begin ?templateMotifSequenceMatchBeginP0A6D3324 .
?templateMotifSequenceMatchBeginP0A6D3324 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D3319 ;
faldo:reference isoform:P0A6D3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D3325 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch326 faldo:location ?targetMotifMatchRegionMatch327 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00210329 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D3MF_00210320 .
?targetMotifMatchRegionMatch327 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00210328 .
?targetMotifMatchRegionMatchBeginMF_00210328 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00210321 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00210329 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D3MF_00210318, 1, (STRLEN(?templateMotifCigarP0A6D3MF_00210318) - STRLEN(REPLACE(?templateMotifCigarP0A6D3MF_00210318, CONCAT('^(?:-*[^-]){', STR(((313 - ?templateMotifSequenceMatchBeginPositionP0A6D3319) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1330) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210320, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210320) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210320, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1330), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210320, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210320) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210320, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1330), '}'), '')))), '[^-]', ''))) AS ?step2331) .
BIND(((?step2331 + ?targetMotifMatchRegionMatchBeginPositionMF_00210321) - 1) AS ?thisPositionOn100) .
BIND(?thisPositionOn100 AS ?thisPositionOn101) .
BIND(?this AS ?pfs1t332) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfsb97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfse98) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn100, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a96')) AS ?annotation96) .
BIND(?this AS ?pfs95) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch337 faldo:location ?templateMotifSequenceMatchRegionP0A6D3338 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D3340 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D3MF_00210333 .
?templateMotifSequenceMatchRegionP0A6D3338 faldo:begin ?templateMotifSequenceMatchBeginP0A6D3339 .
?templateMotifSequenceMatchBeginP0A6D3339 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D3334 ;
faldo:reference isoform:P0A6D3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D3340 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch341 faldo:location ?targetMotifMatchRegionMatch342 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00210344 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D3MF_00210335 .
?targetMotifMatchRegionMatch342 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00210343 .
?targetMotifMatchRegionMatchBeginMF_00210343 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00210336 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00210344 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D3MF_00210333, 1, (STRLEN(?templateMotifCigarP0A6D3MF_00210333) - STRLEN(REPLACE(?templateMotifCigarP0A6D3MF_00210333, CONCAT('^(?:-*[^-]){', STR(((336 - ?templateMotifSequenceMatchBeginPositionP0A6D3334) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1345) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210335, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210335) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210335, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1345), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210335, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210335) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210335, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1345), '}'), '')))), '[^-]', ''))) AS ?step2346) .
BIND(((?step2346 + ?targetMotifMatchRegionMatchBeginPositionMF_00210336) - 1) AS ?thisPositionOn107) .
BIND(?thisPositionOn107 AS ?thisPositionOn108) .
BIND(?this AS ?pfs1t347) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfsb104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfse105) .
FILTER (REGEX('[NQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn107, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a103')) AS ?annotation103) .
BIND(?this AS ?pfs102) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch352 faldo:location ?templateMotifSequenceMatchRegionP0A6D3353 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D3355 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D3MF_00210348 .
?templateMotifSequenceMatchRegionP0A6D3353 faldo:begin ?templateMotifSequenceMatchBeginP0A6D3354 .
?templateMotifSequenceMatchBeginP0A6D3354 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D3349 ;
faldo:reference isoform:P0A6D3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D3355 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch356 faldo:location ?targetMotifMatchRegionMatch357 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00210359 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D3MF_00210350 .
?targetMotifMatchRegionMatch357 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00210358 .
?targetMotifMatchRegionMatchBeginMF_00210358 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00210351 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00210359 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D3MF_00210348, 1, (STRLEN(?templateMotifCigarP0A6D3MF_00210348) - STRLEN(REPLACE(?templateMotifCigarP0A6D3MF_00210348, CONCAT('^(?:-*[^-]){', STR(((340 - ?templateMotifSequenceMatchBeginPositionP0A6D3349) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1360) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210350, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210350) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210350, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1360), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210350, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210350) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210350, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1360), '}'), '')))), '[^-]', ''))) AS ?step2361) .
BIND(((?step2361 + ?targetMotifMatchRegionMatchBeginPositionMF_00210351) - 1) AS ?thisPositionOn114) .
BIND(?thisPositionOn114 AS ?thisPositionOn115) .
BIND(?this AS ?pfs1t362) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfsb111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfse112) .
FILTER (REGEX('[KHQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn114, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a110')) AS ?annotation110) .
BIND(?this AS ?pfs109) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch367 faldo:location ?templateMotifSequenceMatchRegionP0A6D3368 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D3370 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D3MF_00210363 .
?templateMotifSequenceMatchRegionP0A6D3368 faldo:begin ?templateMotifSequenceMatchBeginP0A6D3369 .
?templateMotifSequenceMatchBeginP0A6D3369 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D3364 ;
faldo:reference isoform:P0A6D3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D3370 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch371 faldo:location ?targetMotifMatchRegionMatch372 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00210374 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D3MF_00210365 .
?targetMotifMatchRegionMatch372 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00210373 .
?targetMotifMatchRegionMatchBeginMF_00210373 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00210366 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00210374 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D3MF_00210363, 1, (STRLEN(?templateMotifCigarP0A6D3MF_00210363) - STRLEN(REPLACE(?templateMotifCigarP0A6D3MF_00210363, CONCAT('^(?:-*[^-]){', STR(((344 - ?templateMotifSequenceMatchBeginPositionP0A6D3364) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1375) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210365, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210365) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210365, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1375), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210365, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210365) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210365, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1375), '}'), '')))), '[^-]', ''))) AS ?step2376) .
BIND(((?step2376 + ?targetMotifMatchRegionMatchBeginPositionMF_00210366) - 1) AS ?thisPositionOn121) .
BIND(?thisPositionOn121 AS ?thisPositionOn122) .
BIND(?this AS ?pfs1t377) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfsb118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn122))) AS ?pfse119) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn121, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a117')) AS ?annotation117) .
BIND(?this AS ?pfs116) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch382 faldo:location ?templateMotifSequenceMatchRegionP0A6D3383 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D3385 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D3MF_00210378 .
?templateMotifSequenceMatchRegionP0A6D3383 faldo:begin ?templateMotifSequenceMatchBeginP0A6D3384 .
?templateMotifSequenceMatchBeginP0A6D3384 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D3379 ;
faldo:reference isoform:P0A6D3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D3385 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch386 faldo:location ?targetMotifMatchRegionMatch387 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00210389 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D3MF_00210380 .
?targetMotifMatchRegionMatch387 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00210388 .
?targetMotifMatchRegionMatchBeginMF_00210388 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00210381 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00210389 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D3MF_00210378, 1, (STRLEN(?templateMotifCigarP0A6D3MF_00210378) - STRLEN(REPLACE(?templateMotifCigarP0A6D3MF_00210378, CONCAT('^(?:-*[^-]){', STR(((386 - ?templateMotifSequenceMatchBeginPositionP0A6D3379) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1390) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210380, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210380) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210380, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1390), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210380, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210380) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210380, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1390), '}'), '')))), '[^-]', ''))) AS ?step2391) .
BIND(((?step2391 + ?targetMotifMatchRegionMatchBeginPositionMF_00210381) - 1) AS ?thisPositionOn128) .
BIND(?thisPositionOn128 AS ?thisPositionOn129) .
BIND(?this AS ?pfs1t392) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfsb125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn129))) AS ?pfse126) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn128, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a124')) AS ?annotation124) .
BIND(?this AS ?pfs123) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch397 faldo:location ?templateMotifSequenceMatchRegionP0A6D3398 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6D3400 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6D3MF_00210393 .
?templateMotifSequenceMatchRegionP0A6D3398 faldo:begin ?templateMotifSequenceMatchBeginP0A6D3399 .
?templateMotifSequenceMatchBeginP0A6D3399 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6D3394 ;
faldo:reference isoform:P0A6D3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6D3400 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
?targetMotifMatch401 faldo:location ?targetMotifMatchRegionMatch402 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00210404 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6D3MF_00210395 .
?targetMotifMatchRegionMatch402 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00210403 .
?targetMotifMatchRegionMatchBeginMF_00210403 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00210396 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00210404 edam:has_input signature:MF_00210 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6D3MF_00210393, 1, (STRLEN(?templateMotifCigarP0A6D3MF_00210393) - STRLEN(REPLACE(?templateMotifCigarP0A6D3MF_00210393, CONCAT('^(?:-*[^-]){', STR(((411 - ?templateMotifSequenceMatchBeginPositionP0A6D3394) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1405) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210395, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210395) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210395, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1405), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6D3MF_00210395, 1, (STRLEN(?targetMotifMatchCigarP0A6D3MF_00210395) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6D3MF_00210395, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1405), '}'), '')))), '[^-]', ''))) AS ?step2406) .
BIND(((?step2406 + ?targetMotifMatchRegionMatchBeginPositionMF_00210396) - 1) AS ?thisPositionOn135) .
BIND(?thisPositionOn135 AS ?thisPositionOn136) .
BIND(?this AS ?pfs1t407) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn135))) AS ?pfsb132) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn136))) AS ?pfse133) .
FILTER (REGEX('[KQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn135, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00210a131')) AS ?annotation131) .
BIND(?this AS ?pfs130) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(?this AS ?case11) .
}
}
"xsd:string |
