| http://purl.uniprot.org/unirules/MF_00235#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:99387 up:source unirule:MF_00235 .
_:99388 up:source unirule:MF_00235 .
_:99389 up:source unirule:MF_00235 .
_:99390 up:source unirule:MF_00235 .
_:99391 up:source unirule:MF_00235 .
_:99392 up:source unirule:MF_00235 .
_:99393 up:source unirule:MF_00235 .
_:99394 up:source unirule:MF_00235 .
_:99395 up:source unirule:MF_00235 .
_:99396 up:source unirule:MF_00235 .
_:99397 up:source unirule:MF_00235 .
_:99398 up:source unirule:MF_00235 .
_:99399 up:source unirule:MF_00235 .
_:99400 up:source unirule:MF_00235 .
_:99401 up:source unirule:MF_00235 .
_:99402 up:source unirule:MF_00235 .
_:99403 up:source unirule:MF_00235 .
_:99404 up:source unirule:MF_00235 .
_:99405 up:source unirule:MF_00235 .
_:99406 up:source unirule:MF_00235 .
_:99407 up:source unirule:MF_00235 .
_:99408 up:source unirule:MF_00235 .
_:99409 up:source unirule:MF_00235 .
_:99410 up:source unirule:MF_00235 .
_:99411 up:source unirule:MF_00235 .
_:99412 up:source unirule:MF_00235 .
_:99413 up:source unirule:MF_00235 .
_:99414 up:source unirule:MF_00235 .
_:99415 up:source unirule:MF_00235 .
_:99416 up:source unirule:MF_00235 .
_:99417 up:source unirule:MF_00235 .
_:99418 up:source unirule:MF_00235 .
_:99419 up:source unirule:MF_00235 .
_:99420 up:source unirule:MF_00235 .
_:99421 up:source unirule:MF_00235 .
_:99422 up:source unirule:MF_00235 .
_:99423 up:source unirule:MF_00235 .
_:99424 up:source unirule:MF_00235 .
_:99425 up:source unirule:MF_00235 .
_:99426 up:source unirule:MF_00235 .
_:99427 up:source unirule:MF_00235 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation12 ;
up:classifiedWith GO:0004017 ,
GO:0005524 ,
GO:0005737 ,
GO:0044209 ,
keyword:418 ,
keyword:545 ,
keyword:547 ,
keyword:67 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.4.3' ;
up:fullName 'Adenylate kinase' ;
up:shortName 'AK' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'ATP-AMP transphosphorylase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'ATP:AMP phosphotransferase' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'Adenylate monophosphate kinase' ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'adk' .
?annotation5 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism.' .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Purine metabolism; AMP biosynthesis via salvage pathway; AMP from ADP: step 1/1.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation10 a up:Subcellular_Location_Annotation .
?annotation10li11 up:cellularComponent .
?annotation12 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the adenylate kinase family.' .
?case13 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?pfs15 up:annotation ?annotation16 ,
?annotation22 ,
?annotation28 ,
?annotation34 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:29105 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:29105 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf chebi:29105 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:29105 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'NMP' .
?pfsb42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'LID' .
?pfsb48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf chebi:30616 .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
up:ligand ?ligand63 ;
rdf:type up:Binding_Site_Annotation .
?pfsb61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand63 rdfs:subClassOf chebi:30616 .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
up:ligand ?ligand70 ;
rdf:type up:Binding_Site_Annotation .
?pfsb68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?ligand70 rdfs:subClassOf chebi:456215 .
?pfs73 up:annotation ?annotation74 .
?annotation74 faldo:begin ?pfsb75 ;
faldo:end ?pfse76 ;
up:ligand ?ligand77 ;
rdf:type up:Binding_Site_Annotation .
?pfsb75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfse76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?ligand77 rdfs:subClassOf chebi:456215 .
?pfs80 up:annotation ?annotation81 .
?annotation81 faldo:begin ?pfsb82 ;
faldo:end ?pfse83 ;
up:ligand ?ligand84 ;
rdf:type up:Binding_Site_Annotation .
?pfsb82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfse83 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?ligand84 rdfs:subClassOf chebi:30616 .
?pfs87 up:annotation ?annotation88 .
?annotation88 faldo:begin ?pfsb89 ;
faldo:end ?pfse90 ;
up:ligand ?ligand91 ;
rdf:type up:Binding_Site_Annotation .
?pfsb89 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfse90 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?ligand91 rdfs:subClassOf chebi:456215 .
?pfs94 up:annotation ?annotation95 .
?annotation95 faldo:begin ?pfsb96 ;
faldo:end ?pfse97 ;
up:ligand ?ligand98 ;
rdf:type up:Binding_Site_Annotation .
?pfsb96 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?pfse97 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?ligand98 rdfs:subClassOf chebi:456215 .
?pfs101 up:annotation ?annotation102 .
?annotation102 faldo:begin ?pfsb103 ;
faldo:end ?pfse104 ;
up:ligand ?ligand105 ;
rdf:type up:Binding_Site_Annotation .
?pfsb103 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?pfse104 faldo:position ?thisPositionOn107 ;
rdf:type faldo:ExactPosition .
?ligand105 rdfs:subClassOf chebi:456215 .
?pfs108 up:annotation ?annotation109 .
?annotation109 faldo:begin ?pfsb110 ;
faldo:end ?pfse111 ;
up:ligand ?ligand112 ;
rdf:type up:Binding_Site_Annotation .
?pfsb110 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?pfse111 faldo:position ?thisPositionOn114 ;
rdf:type faldo:ExactPosition .
?ligand112 rdfs:subClassOf chebi:30616 .
?pfs115 up:annotation ?annotation116 .
?annotation116 faldo:begin ?pfsb117 ;
faldo:end ?pfse118 ;
up:ligand ?ligand119 ;
rdf:type up:Binding_Site_Annotation .
?pfsb117 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?pfse118 faldo:position ?thisPositionOn121 ;
rdf:type faldo:ExactPosition .
?ligand119 rdfs:subClassOf chebi:456215 .
?pfs122 up:annotation ?annotation123 .
?annotation123 faldo:begin ?pfsb124 ;
faldo:end ?pfse125 ;
up:ligand ?ligand126 ;
rdf:type up:Binding_Site_Annotation .
?pfsb124 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
?pfse125 faldo:position ?thisPositionOn128 ;
rdf:type faldo:ExactPosition .
?ligand126 rdfs:subClassOf chebi:456215 .
_:99428 a rdf:Statement ;
up:attribution _:99387 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:99429 a rdf:Statement ;
up:attribution _:99388 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:99430 a rdf:Statement ;
up:attribution _:99389 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:99431 a rdf:Statement ;
up:attribution _:99390 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:99432 a rdf:Statement ;
up:attribution _:99391 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:99433 a rdf:Statement ;
up:attribution _:99392 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:99434 a rdf:Statement ;
up:attribution _:99393 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:99435 a rdf:Statement ;
up:attribution _:99394 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:99436 a rdf:Statement ;
up:attribution _:99395 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:99437 a rdf:Statement ;
up:attribution _:99396 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:99438 a rdf:Statement ;
up:attribution _:99397 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:99439 a rdf:Statement ;
up:attribution _:99398 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:99440 a rdf:Statement ;
up:attribution _:99399 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:99441 a rdf:Statement ;
up:attribution _:99400 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:99442 a rdf:Statement ;
up:attribution _:99401 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:99443 a rdf:Statement ;
up:attribution _:99402 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:99444 a rdf:Statement ;
up:attribution _:99403 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:545 .
_:99445 a rdf:Statement ;
up:attribution _:99404 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004017 .
_:99446 a rdf:Statement ;
up:attribution _:99405 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:99447 a rdf:Statement ;
up:attribution _:99406 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044209 .
_:99448 a rdf:Statement ;
up:attribution _:99407 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:99449 a rdf:Statement ;
up:attribution _:99408 ;
rdf:subject ?case13 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:99450 a rdf:Statement ;
up:attribution _:99409 ;
rdf:subject ?case13 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:99451 a rdf:Statement ;
up:attribution _:99410 ;
rdf:subject ?case13 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:99452 a rdf:Statement ;
up:source unirule:MF_00235 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:99453 a rdf:Statement ;
up:attribution _:99411 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:99454 a rdf:Statement ;
up:source unirule:MF_00235 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:99455 a rdf:Statement ;
up:attribution _:99412 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:99456 a rdf:Statement ;
up:source unirule:MF_00235 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:99457 a rdf:Statement ;
up:attribution _:99413 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:99458 a rdf:Statement ;
up:source unirule:MF_00235 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:99459 a rdf:Statement ;
up:attribution _:99414 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:99460 a rdf:Statement ;
up:source unirule:MF_00235 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:99461 a rdf:Statement ;
up:attribution _:99415 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:99462 a rdf:Statement ;
up:source unirule:MF_00235 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:99463 a rdf:Statement ;
up:attribution _:99416 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:99464 a rdf:Statement ;
up:source unirule:MF_00235 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:99465 a rdf:Statement ;
up:attribution _:99417 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:99466 a rdf:Statement ;
up:source unirule:MF_00235 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:99467 a rdf:Statement ;
up:attribution _:99418 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:99468 a rdf:Statement ;
up:source unirule:MF_00235 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:99469 a rdf:Statement ;
up:attribution _:99419 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:99470 a rdf:Statement ;
up:source unirule:MF_00235 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:99471 a rdf:Statement ;
up:attribution _:99420 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:99472 a rdf:Statement ;
up:source unirule:MF_00235 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:99473 a rdf:Statement ;
up:attribution _:99421 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:99474 a rdf:Statement ;
up:source unirule:MF_00235 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:99475 a rdf:Statement ;
up:attribution _:99422 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:99476 a rdf:Statement ;
up:source unirule:MF_00235 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:99477 a rdf:Statement ;
up:attribution _:99423 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:99478 a rdf:Statement ;
up:source unirule:MF_00235 ;
rdf:subject ?pfs101 ;
rdf:predicate up:annotation ;
rdf:object ?annotation102 .
_:99479 a rdf:Statement ;
up:attribution _:99424 ;
rdf:subject ?pfs101 ;
rdf:predicate up:annotation ;
rdf:object ?annotation102 .
_:99480 a rdf:Statement ;
up:source unirule:MF_00235 ;
rdf:subject ?pfs108 ;
rdf:predicate up:annotation ;
rdf:object ?annotation109 .
_:99481 a rdf:Statement ;
up:attribution _:99425 ;
rdf:subject ?pfs108 ;
rdf:predicate up:annotation ;
rdf:object ?annotation109 .
_:99482 a rdf:Statement ;
up:source unirule:MF_00235 ;
rdf:subject ?pfs115 ;
rdf:predicate up:annotation ;
rdf:object ?annotation116 .
_:99483 a rdf:Statement ;
up:attribution _:99426 ;
rdf:subject ?pfs115 ;
rdf:predicate up:annotation ;
rdf:object ?annotation116 .
_:99484 a rdf:Statement ;
up:source unirule:MF_00235 ;
rdf:subject ?pfs122 ;
rdf:predicate up:annotation ;
rdf:object ?annotation123 .
_:99485 a rdf:Statement ;
up:attribution _:99427 ;
rdf:subject ?pfs122 ;
rdf:predicate up:annotation ;
rdf:object ?annotation123 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00235
#Rule MF_00235 Created by:? on:2005-02-28 Modified by:Andrea Auchincloss on:2025-08-19
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00235 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03172 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00235 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03172 .
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2759 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00235 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03171 .
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2759 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00235 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03170 .
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2759 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00235 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03169 .
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2759 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00235 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03168 .
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2759 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00235 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2759 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00235 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03172 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00235 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03172 .
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2759 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00235 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03171 .
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2759 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00235 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03170 .
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2759 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00235 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03169 .
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2759 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00235 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_03168 .
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2759 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00235 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2759 .
})) .
}
BIND(URI(CONCAT(STR(?this), '#MF_00235a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00235a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00235a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00235a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_00235a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00235a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00235a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00235a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00235a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_00235a12')) AS ?annotation12) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionP16304134 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP16304136 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP16304MF_00235129 .
?templateMotifSequenceMatchRegionP16304134 faldo:begin ?templateMotifSequenceMatchBeginP16304135 .
?templateMotifSequenceMatchBeginP16304135 faldo:position ?templateMotifSequenceMatchBeginPositionP16304130 ;
faldo:reference isoform:P16304-1 .
?templateMotifSequenceProfileAlignmentOperationP16304136 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235140 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP16304MF_00235131 .
?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235139 .
?targetMotifMatchRegionMatchBeginMF_00235139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235132 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00235140 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16304MF_00235129, 1, (STRLEN(?templateMotifCigarP16304MF_00235129) - STRLEN(REPLACE(?templateMotifCigarP16304MF_00235129, CONCAT('^(?:-*[^-]){', STR(((130 - ?templateMotifSequenceMatchBeginPositionP16304130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16304MF_00235131, 1, (STRLEN(?targetMotifMatchCigarP16304MF_00235131) - STRLEN(REPLACE(?targetMotifMatchCigarP16304MF_00235131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16304MF_00235131, 1, (STRLEN(?targetMotifMatchCigarP16304MF_00235131) - STRLEN(REPLACE(?targetMotifMatchCigarP16304MF_00235131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_00235132) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16304MF_00235129, 1, (STRLEN(?templateMotifCigarP16304MF_00235129) - STRLEN(REPLACE(?templateMotifCigarP16304MF_00235129, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionP16304130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16304MF_00235131, 1, (STRLEN(?targetMotifMatchCigarP16304MF_00235131) - STRLEN(REPLACE(?targetMotifMatchCigarP16304MF_00235131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16304MF_00235131, 1, (STRLEN(?targetMotifMatchCigarP16304MF_00235131) - STRLEN(REPLACE(?targetMotifMatchCigarP16304MF_00235131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_00235132) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t146) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16304MF_00235129, 1, (STRLEN(?templateMotifCigarP16304MF_00235129) - STRLEN(REPLACE(?templateMotifCigarP16304MF_00235129, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionP16304130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16304MF_00235131, 1, (STRLEN(?targetMotifMatchCigarP16304MF_00235131) - STRLEN(REPLACE(?targetMotifMatchCigarP16304MF_00235131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16304MF_00235131, 1, (STRLEN(?targetMotifMatchCigarP16304MF_00235131) - STRLEN(REPLACE(?targetMotifMatchCigarP16304MF_00235131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) .
BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_00235132) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP16304MF_00235129, 1, (STRLEN(?templateMotifCigarP16304MF_00235129) - STRLEN(REPLACE(?templateMotifCigarP16304MF_00235129, CONCAT('^(?:-*[^-]){', STR(((153 - ?templateMotifSequenceMatchBeginPositionP16304130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP16304MF_00235131, 1, (STRLEN(?targetMotifMatchCigarP16304MF_00235131) - STRLEN(REPLACE(?targetMotifMatchCigarP16304MF_00235131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP16304MF_00235131, 1, (STRLEN(?targetMotifMatchCigarP16304MF_00235131) - STRLEN(REPLACE(?targetMotifMatchCigarP16304MF_00235131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_00235132) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER (REGEX('[CD]', SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1))) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionP69441158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69441MF_00235153 .
?templateMotifSequenceMatchRegionP69441158 faldo:begin ?templateMotifSequenceMatchBeginP69441159 .
?templateMotifSequenceMatchBeginP69441159 faldo:position ?templateMotifSequenceMatchBeginPositionP69441154 ;
faldo:reference isoform:P69441-1 .
?templateMotifSequenceProfileAlignmentOperationP69441160 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235164 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69441MF_00235155 .
?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235163 .
?targetMotifMatchRegionMatchBeginMF_00235163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235156 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00235164 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235153, 1, (STRLEN(?templateMotifCigarP69441MF_00235153) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235153, CONCAT('^(?:-*[^-]){', STR(((30 - ?templateMotifSequenceMatchBeginPositionP69441154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235155, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235155) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235155, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235155) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_00235156) - 1) AS ?thisPositionOn44) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235153, 1, (STRLEN(?templateMotifCigarP69441MF_00235153) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235153, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionP69441154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235155, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235155) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235155, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235155) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) .
BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_00235156) - 1) AS ?thisPositionOn45) .
BIND(?this AS ?pfs2t169) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse43) .
FILTER ((BOUND(?thisPositionOn44) && BOUND(?thisPositionOn45))) .
BIND(URI(CONCAT(STR(?this), '#MF_00235a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch174 faldo:location ?templateMotifSequenceMatchRegionP69441175 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441177 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69441MF_00235170 .
?templateMotifSequenceMatchRegionP69441175 faldo:begin ?templateMotifSequenceMatchBeginP69441176 .
?templateMotifSequenceMatchBeginP69441176 faldo:position ?templateMotifSequenceMatchBeginPositionP69441171 ;
faldo:reference isoform:P69441-1 .
?templateMotifSequenceProfileAlignmentOperationP69441177 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
?targetMotifMatch178 faldo:location ?targetMotifMatchRegionMatch179 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235181 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69441MF_00235172 .
?targetMotifMatchRegionMatch179 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235180 .
?targetMotifMatchRegionMatchBeginMF_00235180 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235173 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00235181 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235170, 1, (STRLEN(?templateMotifCigarP69441MF_00235170) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235170, CONCAT('^(?:-*[^-]){', STR(((122 - ?templateMotifSequenceMatchBeginPositionP69441171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235172, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235172) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235172, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235172) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) .
BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_00235173) - 1) AS ?thisPositionOn50) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235170, 1, (STRLEN(?templateMotifCigarP69441MF_00235170) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235170, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionP69441171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235172, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235172) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235172, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235172) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), '')))), '[^-]', ''))) AS ?step2185) .
BIND(((?step2185 + ?targetMotifMatchRegionMatchBeginPositionMF_00235173) - 1) AS ?thisPositionOn51) .
BIND(?this AS ?pfs2t186) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse49) .
FILTER ((BOUND(?thisPositionOn50) && BOUND(?thisPositionOn51))) .
BIND(URI(CONCAT(STR(?this), '#MF_00235a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch191 faldo:location ?templateMotifSequenceMatchRegionP69441192 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441194 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69441MF_00235187 .
?templateMotifSequenceMatchRegionP69441192 faldo:begin ?templateMotifSequenceMatchBeginP69441193 .
?templateMotifSequenceMatchBeginP69441193 faldo:position ?templateMotifSequenceMatchBeginPositionP69441188 ;
faldo:reference isoform:P69441-1 .
?templateMotifSequenceProfileAlignmentOperationP69441194 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
?targetMotifMatch195 faldo:location ?targetMotifMatchRegionMatch196 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235198 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69441MF_00235189 .
?targetMotifMatchRegionMatch196 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235197 .
?targetMotifMatchRegionMatchBeginMF_00235197 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235190 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00235198 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235187, 1, (STRLEN(?templateMotifCigarP69441MF_00235187) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235187, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP69441188) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235189, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235189) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235189, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235189) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), '')))), '[^-]', ''))) AS ?step2200) .
BIND(((?step2200 + ?targetMotifMatchRegionMatchBeginPositionMF_00235190) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs2t201) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) .
FILTER (BOUND(?thisPositionOn57)) .
BIND(URI(CONCAT(STR(?this), '#MF_00235a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch206 faldo:location ?templateMotifSequenceMatchRegionP69441207 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441209 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69441MF_00235202 .
?templateMotifSequenceMatchRegionP69441207 faldo:begin ?templateMotifSequenceMatchBeginP69441208 .
?templateMotifSequenceMatchBeginP69441208 faldo:position ?templateMotifSequenceMatchBeginPositionP69441203 ;
faldo:reference isoform:P69441-1 .
?templateMotifSequenceProfileAlignmentOperationP69441209 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
?targetMotifMatch210 faldo:location ?targetMotifMatchRegionMatch211 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235213 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69441MF_00235204 .
?targetMotifMatchRegionMatch211 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235212 .
?targetMotifMatchRegionMatchBeginMF_00235212 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235205 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00235213 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235202, 1, (STRLEN(?templateMotifCigarP69441MF_00235202) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235202, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionP69441203) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1214) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235204, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235204) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235204, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235204) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), '')))), '[^-]', ''))) AS ?step2215) .
BIND(((?step2215 + ?targetMotifMatchRegionMatchBeginPositionMF_00235205) - 1) AS ?thisPositionOn64) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235202, 1, (STRLEN(?templateMotifCigarP69441MF_00235202) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235202, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionP69441203) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1216) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235204, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235204) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235204, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235204) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), '')))), '[^-]', ''))) AS ?step2217) .
BIND(((?step2217 + ?targetMotifMatchRegionMatchBeginPositionMF_00235205) - 1) AS ?thisPositionOn65) .
BIND(?this AS ?pfs2t218) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) .
FILTER (REGEX('[GA][ARNDCQEGHILKMFPSTWYVBZJUOX]GK[GST][ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn64, (?thisPositionOn65 - ?thisPositionOn64)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00235a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch223 faldo:location ?templateMotifSequenceMatchRegionP69441224 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441226 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69441MF_00235219 .
?templateMotifSequenceMatchRegionP69441224 faldo:begin ?templateMotifSequenceMatchBeginP69441225 .
?templateMotifSequenceMatchBeginP69441225 faldo:position ?templateMotifSequenceMatchBeginPositionP69441220 ;
faldo:reference isoform:P69441-1 .
?templateMotifSequenceProfileAlignmentOperationP69441226 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
?targetMotifMatch227 faldo:location ?targetMotifMatchRegionMatch228 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235230 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69441MF_00235221 .
?targetMotifMatchRegionMatch228 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235229 .
?targetMotifMatchRegionMatchBeginMF_00235229 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235222 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00235230 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235219, 1, (STRLEN(?templateMotifCigarP69441MF_00235219) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235219, CONCAT('^(?:-*[^-]){', STR(((57 - ?templateMotifSequenceMatchBeginPositionP69441220) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1231) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235221, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235221) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235221, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235221) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), '')))), '[^-]', ''))) AS ?step2232) .
BIND(((?step2232 + ?targetMotifMatchRegionMatchBeginPositionMF_00235222) - 1) AS ?thisPositionOn71) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235219, 1, (STRLEN(?templateMotifCigarP69441MF_00235219) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235219, CONCAT('^(?:-*[^-]){', STR(((59 - ?templateMotifSequenceMatchBeginPositionP69441220) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1233) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235221, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235221) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235221, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235221) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), '')))), '[^-]', ''))) AS ?step2234) .
BIND(((?step2234 + ?targetMotifMatchRegionMatchBeginPositionMF_00235222) - 1) AS ?thisPositionOn72) .
BIND(?this AS ?pfs2t235) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse69) .
FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX][LYF][VILM]', SUBSTR(?thisSequenceValue, ?thisPositionOn71, (?thisPositionOn72 - ?thisPositionOn71)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00235a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch240 faldo:location ?templateMotifSequenceMatchRegionP69441241 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441243 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69441MF_00235236 .
?templateMotifSequenceMatchRegionP69441241 faldo:begin ?templateMotifSequenceMatchBeginP69441242 .
?templateMotifSequenceMatchBeginP69441242 faldo:position ?templateMotifSequenceMatchBeginPositionP69441237 ;
faldo:reference isoform:P69441-1 .
?templateMotifSequenceProfileAlignmentOperationP69441243 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
?targetMotifMatch244 faldo:location ?targetMotifMatchRegionMatch245 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235247 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69441MF_00235238 .
?targetMotifMatchRegionMatch245 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235246 .
?targetMotifMatchRegionMatchBeginMF_00235246 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235239 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00235247 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235236, 1, (STRLEN(?templateMotifCigarP69441MF_00235236) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235236, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionP69441237) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1248) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235238, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235238) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235238, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235238) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), '')))), '[^-]', ''))) AS ?step2249) .
BIND(((?step2249 + ?targetMotifMatchRegionMatchBeginPositionMF_00235239) - 1) AS ?thisPositionOn78) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235236, 1, (STRLEN(?templateMotifCigarP69441MF_00235236) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235236, CONCAT('^(?:-*[^-]){', STR(((88 - ?templateMotifSequenceMatchBeginPositionP69441237) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1250) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235238, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235238) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1250), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235238, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235238) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1250), '}'), '')))), '[^-]', ''))) AS ?step2251) .
BIND(((?step2251 + ?targetMotifMatchRegionMatchBeginPositionMF_00235239) - 1) AS ?thisPositionOn79) .
BIND(?this AS ?pfs2t252) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse76) .
FILTER (REGEX('G[FY]PR', SUBSTR(?thisSequenceValue, ?thisPositionOn78, (?thisPositionOn79 - ?thisPositionOn78)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00235a74')) AS ?annotation74) .
BIND(?this AS ?pfs73) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch257 faldo:location ?templateMotifSequenceMatchRegionP69441258 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441260 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69441MF_00235253 .
?templateMotifSequenceMatchRegionP69441258 faldo:begin ?templateMotifSequenceMatchBeginP69441259 .
?templateMotifSequenceMatchBeginP69441259 faldo:position ?templateMotifSequenceMatchBeginPositionP69441254 ;
faldo:reference isoform:P69441-1 .
?templateMotifSequenceProfileAlignmentOperationP69441260 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
?targetMotifMatch261 faldo:location ?targetMotifMatchRegionMatch262 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235264 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69441MF_00235255 .
?targetMotifMatchRegionMatch262 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235263 .
?targetMotifMatchRegionMatchBeginMF_00235263 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235256 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00235264 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235253, 1, (STRLEN(?templateMotifCigarP69441MF_00235253) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235253, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionP69441254) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1265) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235255, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235255) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1265), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235255, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235255) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1265), '}'), '')))), '[^-]', ''))) AS ?step2266) .
BIND(((?step2266 + ?targetMotifMatchRegionMatchBeginPositionMF_00235256) - 1) AS ?thisPositionOn85) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235253, 1, (STRLEN(?templateMotifCigarP69441MF_00235253) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235253, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionP69441254) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1267) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235255, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235255) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235255, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235255) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), '')))), '[^-]', ''))) AS ?step2268) .
BIND(((?step2268 + ?targetMotifMatchRegionMatchBeginPositionMF_00235256) - 1) AS ?thisPositionOn86) .
BIND(?this AS ?pfs2t269) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse83) .
FILTER (REGEX('[STVI][YFH]', SUBSTR(?thisSequenceValue, ?thisPositionOn85, (?thisPositionOn86 - ?thisPositionOn85)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00235a81')) AS ?annotation81) .
BIND(?this AS ?pfs80) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch274 faldo:location ?templateMotifSequenceMatchRegionP69441275 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441277 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69441MF_00235270 .
?templateMotifSequenceMatchRegionP69441275 faldo:begin ?templateMotifSequenceMatchBeginP69441276 .
?templateMotifSequenceMatchBeginP69441276 faldo:position ?templateMotifSequenceMatchBeginPositionP69441271 ;
faldo:reference isoform:P69441-1 .
?templateMotifSequenceProfileAlignmentOperationP69441277 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
?targetMotifMatch278 faldo:location ?targetMotifMatchRegionMatch279 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235281 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69441MF_00235272 .
?targetMotifMatchRegionMatch279 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235280 .
?targetMotifMatchRegionMatchBeginMF_00235280 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235273 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00235281 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235270, 1, (STRLEN(?templateMotifCigarP69441MF_00235270) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235270, CONCAT('^(?:-*[^-]){', STR(((31 - ?templateMotifSequenceMatchBeginPositionP69441271) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1282) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235272, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235272) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235272, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235272) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), '')))), '[^-]', ''))) AS ?step2283) .
BIND(((?step2283 + ?targetMotifMatchRegionMatchBeginPositionMF_00235273) - 1) AS ?thisPositionOn92) .
BIND(?thisPositionOn92 AS ?thisPositionOn93) .
BIND(?this AS ?pfs2t284) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse90) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00235a88')) AS ?annotation88) .
BIND(?this AS ?pfs87) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch289 faldo:location ?templateMotifSequenceMatchRegionP69441290 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441292 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69441MF_00235285 .
?templateMotifSequenceMatchRegionP69441290 faldo:begin ?templateMotifSequenceMatchBeginP69441291 .
?templateMotifSequenceMatchBeginP69441291 faldo:position ?templateMotifSequenceMatchBeginPositionP69441286 ;
faldo:reference isoform:P69441-1 .
?templateMotifSequenceProfileAlignmentOperationP69441292 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
?targetMotifMatch293 faldo:location ?targetMotifMatchRegionMatch294 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235296 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69441MF_00235287 .
?targetMotifMatchRegionMatch294 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235295 .
?targetMotifMatchRegionMatchBeginMF_00235295 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235288 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00235296 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235285, 1, (STRLEN(?templateMotifCigarP69441MF_00235285) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235285, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionP69441286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1297) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235287, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235287) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235287, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235287) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), '')))), '[^-]', ''))) AS ?step2298) .
BIND(((?step2298 + ?targetMotifMatchRegionMatchBeginPositionMF_00235288) - 1) AS ?thisPositionOn99) .
BIND(?thisPositionOn99 AS ?thisPositionOn100) .
BIND(?this AS ?pfs2t299) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfsb96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfse97) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn99, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00235a95')) AS ?annotation95) .
BIND(?this AS ?pfs94) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch304 faldo:location ?templateMotifSequenceMatchRegionP69441305 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441307 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69441MF_00235300 .
?templateMotifSequenceMatchRegionP69441305 faldo:begin ?templateMotifSequenceMatchBeginP69441306 .
?templateMotifSequenceMatchBeginP69441306 faldo:position ?templateMotifSequenceMatchBeginPositionP69441301 ;
faldo:reference isoform:P69441-1 .
?templateMotifSequenceProfileAlignmentOperationP69441307 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
?targetMotifMatch308 faldo:location ?targetMotifMatchRegionMatch309 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235311 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69441MF_00235302 .
?targetMotifMatchRegionMatch309 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235310 .
?targetMotifMatchRegionMatchBeginMF_00235310 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235303 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00235311 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235300, 1, (STRLEN(?templateMotifCigarP69441MF_00235300) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235300, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionP69441301) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1312) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235302, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235302) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235302, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235302, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235302) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235302, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), '')))), '[^-]', ''))) AS ?step2313) .
BIND(((?step2313 + ?targetMotifMatchRegionMatchBeginPositionMF_00235303) - 1) AS ?thisPositionOn106) .
BIND(?thisPositionOn106 AS ?thisPositionOn107) .
BIND(?this AS ?pfs2t314) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfsb103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfse104) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn106, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_00235a102')) AS ?annotation102) .
BIND(?this AS ?pfs101) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch319 faldo:location ?templateMotifSequenceMatchRegionP69441320 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441322 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69441MF_00235315 .
?templateMotifSequenceMatchRegionP69441320 faldo:begin ?templateMotifSequenceMatchBeginP69441321 .
?templateMotifSequenceMatchBeginP69441321 faldo:position ?templateMotifSequenceMatchBeginPositionP69441316 ;
faldo:reference isoform:P69441-1 .
?templateMotifSequenceProfileAlignmentOperationP69441322 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
?targetMotifMatch323 faldo:location ?targetMotifMatchRegionMatch324 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235326 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69441MF_00235317 .
?targetMotifMatchRegionMatch324 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235325 .
?targetMotifMatchRegionMatchBeginMF_00235325 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235318 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00235326 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235315, 1, (STRLEN(?templateMotifCigarP69441MF_00235315) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235315, CONCAT('^(?:-*[^-]){', STR(((123 - ?templateMotifSequenceMatchBeginPositionP69441316) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1327) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235317, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235317) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235317, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235317) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), '')))), '[^-]', ''))) AS ?step2328) .
BIND(((?step2328 + ?targetMotifMatchRegionMatchBeginPositionMF_00235318) - 1) AS ?thisPositionOn113) .
BIND(?thisPositionOn113 AS ?thisPositionOn114) .
BIND(?this AS ?pfs2t329) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfsb110) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfse111) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn113, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00235a109')) AS ?annotation109) .
BIND(?this AS ?pfs108) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch334 faldo:location ?templateMotifSequenceMatchRegionP69441335 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441337 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69441MF_00235330 .
?templateMotifSequenceMatchRegionP69441335 faldo:begin ?templateMotifSequenceMatchBeginP69441336 .
?templateMotifSequenceMatchBeginP69441336 faldo:position ?templateMotifSequenceMatchBeginPositionP69441331 ;
faldo:reference isoform:P69441-1 .
?templateMotifSequenceProfileAlignmentOperationP69441337 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
?targetMotifMatch338 faldo:location ?targetMotifMatchRegionMatch339 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235341 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69441MF_00235332 .
?targetMotifMatchRegionMatch339 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235340 .
?targetMotifMatchRegionMatchBeginMF_00235340 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235333 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00235341 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235330, 1, (STRLEN(?templateMotifCigarP69441MF_00235330) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235330, CONCAT('^(?:-*[^-]){', STR(((156 - ?templateMotifSequenceMatchBeginPositionP69441331) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1342) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235332, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235332) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235332, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235332) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), '')))), '[^-]', ''))) AS ?step2343) .
BIND(((?step2343 + ?targetMotifMatchRegionMatchBeginPositionMF_00235333) - 1) AS ?thisPositionOn120) .
BIND(?thisPositionOn120 AS ?thisPositionOn121) .
BIND(?this AS ?pfs2t344) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfsb117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfse118) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn120, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00235a116')) AS ?annotation116) .
BIND(?this AS ?pfs115) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch349 faldo:location ?templateMotifSequenceMatchRegionP69441350 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP69441352 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP69441MF_00235345 .
?templateMotifSequenceMatchRegionP69441350 faldo:begin ?templateMotifSequenceMatchBeginP69441351 .
?templateMotifSequenceMatchBeginP69441351 faldo:position ?templateMotifSequenceMatchBeginPositionP69441346 ;
faldo:reference isoform:P69441-1 .
?templateMotifSequenceProfileAlignmentOperationP69441352 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
?targetMotifMatch353 faldo:location ?targetMotifMatchRegionMatch354 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00235356 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP69441MF_00235347 .
?targetMotifMatchRegionMatch354 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00235355 .
?targetMotifMatchRegionMatchBeginMF_00235355 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00235348 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00235356 edam:has_input signature:MF_00235 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP69441MF_00235345, 1, (STRLEN(?templateMotifCigarP69441MF_00235345) - STRLEN(REPLACE(?templateMotifCigarP69441MF_00235345, CONCAT('^(?:-*[^-]){', STR(((167 - ?templateMotifSequenceMatchBeginPositionP69441346) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1357) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP69441MF_00235347, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235347) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235347, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1357), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP69441MF_00235347, 1, (STRLEN(?targetMotifMatchCigarP69441MF_00235347) - STRLEN(REPLACE(?targetMotifMatchCigarP69441MF_00235347, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1357), '}'), '')))), '[^-]', ''))) AS ?step2358) .
BIND(((?step2358 + ?targetMotifMatchRegionMatchBeginPositionMF_00235348) - 1) AS ?thisPositionOn127) .
BIND(?thisPositionOn127 AS ?thisPositionOn128) .
BIND(?this AS ?pfs2t359) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfsb124) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfse125) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn127, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00235a123')) AS ?annotation123) .
BIND(?this AS ?pfs122) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag360) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag360, ?UNBOUND_VARIABLE) AS ?case13) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag361) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag361, ?UNBOUND_VARIABLE) AS ?case14) .
}
"xsd:string |
