| http://purl.uniprot.org/unirules/MF_00583#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:227851 up:source unirule:MF_00583 .
_:227852 up:source unirule:MF_00583 .
_:227853 up:source unirule:MF_00583 .
_:227854 up:source unirule:MF_00583 .
_:227855 up:source unirule:MF_00583 .
_:227856 up:source unirule:MF_00583 .
_:227857 up:source unirule:MF_00583 .
_:227858 up:source unirule:MF_00583 .
_:227859 up:source unirule:MF_00583 .
_:227860 up:source unirule:MF_00583 .
_:227861 up:source unirule:MF_00583 .
_:227862 up:source unirule:MF_00583 .
_:227863 up:source unirule:MF_00583 .
_:227864 up:source unirule:MF_00583 .
_:227865 up:source unirule:MF_00583 .
_:227866 up:source unirule:MF_00583 .
_:227867 up:source unirule:MF_00583 .
_:227868 up:source unirule:MF_00583 .
_:227869 up:source unirule:MF_00583 .
_:227870 up:source unirule:MF_00583 .
_:227871 up:source unirule:MF_00583 .
_:227872 up:source unirule:MF_00583 .
_:227873 up:source unirule:MF_00583 .
_:227874 up:source unirule:MF_00583 .
_:227875 up:source unirule:MF_00583 .
_:227876 up:source unirule:MF_00583 .
_:227877 up:source unirule:MF_00583 .
_:227878 up:source unirule:MF_00583 .
_:227879 up:source unirule:MF_00583 .
_:227880 up:source unirule:MF_00583 .
_:227881 up:source unirule:MF_00583 .
_:227882 up:source unirule:MF_00583 .
_:227883 up:source unirule:MF_00583 .
_:227884 up:source unirule:MF_00583 .
_:227885 up:source unirule:MF_00583 .
_:227886 up:source unirule:MF_00583 .
_:227887 up:source unirule:MF_00583 .
_:227888 up:source unirule:MF_00583 .
?this up:alternativeName ?name0 ,
?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0000287 ,
GO:0004749 ,
GO:0005737 ,
GO:0006015 ,
keyword:418 ,
keyword:460 ,
keyword:479 ,
keyword:545 ,
keyword:547 ,
keyword:67 ,
keyword:808 ,
keyword:963 .
?name0 up:fullName '5-phospho-D-ribosyl alpha-1-diphosphate synthase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Phosphoribosyl diphosphate synthase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Phosphoribosyl pyrophosphate synthase' ;
up:shortName 'P-Rib-PP synthase' ,
'PRPP synthase' ,
'PRPPase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'prs' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P).' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Metabolic intermediate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate biosynthesis; 5-phospho-alpha-D-ribose 1-diphosphate from D-ribose 5-phosphate (route I): step 1/1.' .
?annotation8 a up:Subcellular_Location_Annotation .
?annotation8li9 up:cellularComponent .
?case13 up:recommendedName ?name14 .
?name14 up:ecName '2.7.6.1' ;
up:fullName 'Ribose-phosphate pyrophosphokinase' ;
up:shortName 'RPPK' ;
rdf:type up:Structured_Name .
?case15 up:recommendedName ?name16 .
?name16 up:ecName '2.7.6.1' ;
up:fullName 'Putative ribose-phosphate pyrophosphokinase' ;
up:shortName 'RPPK' ;
rdf:type up:Structured_Name .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:18420 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
rdf:type up:Active_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:30616 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:30616 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf chebi:78346 .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
rdf:type up:Active_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
up:ligand ?ligand63 ;
rdf:type up:Binding_Site_Annotation .
?pfsb61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand63 rdfs:subClassOf chebi:18420 .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
up:ligand ?ligand70 ;
rdf:type up:Binding_Site_Annotation .
?pfsb68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?ligand70 rdfs:subClassOf chebi:18420 .
?pfs73 up:annotation ?annotation74 .
?annotation74 faldo:begin ?pfsb75 ;
faldo:end ?pfse76 ;
up:ligand ?ligand77 ;
rdf:type up:Binding_Site_Annotation .
?pfsb75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfse76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?ligand77 rdfs:subClassOf chebi:78346 .
?pfs80 up:annotation ?annotation81 .
?annotation81 faldo:begin ?pfsb82 ;
faldo:end ?pfse83 ;
up:ligand ?ligand84 ;
rdf:type up:Binding_Site_Annotation .
?pfsb82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfse83 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?ligand84 rdfs:subClassOf chebi:78346 .
?pfs87 up:annotation ?annotation88 .
?annotation88 faldo:begin ?pfsb89 ;
faldo:end ?pfse90 ;
up:ligand ?ligand91 ;
rdf:type up:Binding_Site_Annotation .
?pfsb89 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfse90 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?ligand91 rdfs:subClassOf chebi:30616 .
?pfs94 up:annotation ?annotation95 .
?annotation95 faldo:begin ?pfsb96 ;
faldo:end ?pfse97 ;
up:ligand ?ligand98 ;
rdf:type up:Binding_Site_Annotation .
?pfsb96 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?pfse97 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?ligand98 rdfs:subClassOf chebi:30616 .
?pfs101 up:annotation ?annotation102 .
?annotation102 faldo:begin ?pfsb103 ;
faldo:end ?pfse104 ;
up:ligand ?ligand105 ;
rdf:type up:Binding_Site_Annotation .
?pfsb103 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?pfse104 faldo:position ?thisPositionOn107 ;
rdf:type faldo:ExactPosition .
?ligand105 rdfs:subClassOf chebi:78346 .
?pfs108 up:annotation ?annotation109 .
?annotation109 faldo:begin ?pfsb110 ;
faldo:end ?pfse111 ;
up:ligand ?ligand112 ;
rdf:type up:Binding_Site_Annotation .
?pfsb110 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?pfse111 faldo:position ?thisPositionOn114 ;
rdf:type faldo:ExactPosition .
?ligand112 rdfs:subClassOf chebi:18420 .
?pfs115 up:annotation ?annotation116 .
?annotation116 faldo:begin ?pfsb117 ;
faldo:end ?pfse118 ;
up:ligand ?ligand119 ;
rdf:type up:Binding_Site_Annotation .
?pfsb117 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?pfse118 faldo:position ?thisPositionOn121 ;
rdf:type faldo:ExactPosition .
?ligand119 rdfs:subClassOf chebi:78346 .
?pfs122 up:annotation ?annotation123 .
?annotation123 faldo:begin ?pfsb124 ;
faldo:end ?pfse125 ;
up:ligand ?ligand126 ;
rdf:type up:Binding_Site_Annotation .
?pfsb124 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
?pfse125 faldo:position ?thisPositionOn128 ;
rdf:type faldo:ExactPosition .
?ligand126 rdfs:subClassOf chebi:78346 .
_:227889 a rdf:Statement ;
up:attribution _:227851 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name0 .
_:227890 a rdf:Statement ;
up:attribution _:227852 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:227891 a rdf:Statement ;
up:attribution _:227853 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:227892 a rdf:Statement ;
up:attribution _:227854 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:227893 a rdf:Statement ;
up:attribution _:227855 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:227894 a rdf:Statement ;
up:attribution _:227856 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:227895 a rdf:Statement ;
up:attribution _:227857 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:227896 a rdf:Statement ;
up:attribution _:227858 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:227897 a rdf:Statement ;
up:attribution _:227859 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:227898 a rdf:Statement ;
up:attribution _:227860 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:227899 a rdf:Statement ;
up:attribution _:227861 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:227900 a rdf:Statement ;
up:attribution _:227862 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:227901 a rdf:Statement ;
up:attribution _:227863 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:227902 a rdf:Statement ;
up:attribution _:227864 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:227903 a rdf:Statement ;
up:attribution _:227865 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:545 .
_:227904 a rdf:Statement ;
up:attribution _:227866 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:227905 a rdf:Statement ;
up:attribution _:227867 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:227906 a rdf:Statement ;
up:attribution _:227868 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004749 .
_:227907 a rdf:Statement ;
up:attribution _:227869 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006015 .
_:227908 a rdf:Statement ;
up:attribution _:227870 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:227909 a rdf:Statement ;
up:attribution _:227871 ;
rdf:subject ?case13 ;
rdf:predicate up:recommendedName ;
rdf:object ?name14 .
_:227910 a rdf:Statement ;
up:attribution _:227872 ;
rdf:subject ?case15 ;
rdf:predicate up:recommendedName ;
rdf:object ?name16 .
_:227911 a rdf:Statement ;
up:source unirule:MF_00583 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:227912 a rdf:Statement ;
up:attribution _:227873 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:227913 a rdf:Statement ;
up:source unirule:MF_00583 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:227914 a rdf:Statement ;
up:attribution _:227874 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:227915 a rdf:Statement ;
up:source unirule:MF_00583 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:227916 a rdf:Statement ;
up:attribution _:227875 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:227917 a rdf:Statement ;
up:source unirule:MF_00583 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:227918 a rdf:Statement ;
up:attribution _:227876 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:227919 a rdf:Statement ;
up:source unirule:MF_00583 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:227920 a rdf:Statement ;
up:attribution _:227877 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:227921 a rdf:Statement ;
up:source unirule:MF_00583 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:227922 a rdf:Statement ;
up:attribution _:227878 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:227923 a rdf:Statement ;
up:source unirule:MF_00583 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:227924 a rdf:Statement ;
up:attribution _:227879 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:227925 a rdf:Statement ;
up:source unirule:MF_00583 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:227926 a rdf:Statement ;
up:attribution _:227880 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:227927 a rdf:Statement ;
up:source unirule:MF_00583 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:227928 a rdf:Statement ;
up:attribution _:227881 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:227929 a rdf:Statement ;
up:source unirule:MF_00583 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:227930 a rdf:Statement ;
up:attribution _:227882 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:227931 a rdf:Statement ;
up:source unirule:MF_00583 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:227932 a rdf:Statement ;
up:attribution _:227883 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:227933 a rdf:Statement ;
up:source unirule:MF_00583 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:227934 a rdf:Statement ;
up:attribution _:227884 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:227935 a rdf:Statement ;
up:source unirule:MF_00583 ;
rdf:subject ?pfs101 ;
rdf:predicate up:annotation ;
rdf:object ?annotation102 .
_:227936 a rdf:Statement ;
up:attribution _:227885 ;
rdf:subject ?pfs101 ;
rdf:predicate up:annotation ;
rdf:object ?annotation102 .
_:227937 a rdf:Statement ;
up:source unirule:MF_00583 ;
rdf:subject ?pfs108 ;
rdf:predicate up:annotation ;
rdf:object ?annotation109 .
_:227938 a rdf:Statement ;
up:attribution _:227886 ;
rdf:subject ?pfs108 ;
rdf:predicate up:annotation ;
rdf:object ?annotation109 .
_:227939 a rdf:Statement ;
up:source unirule:MF_00583 ;
rdf:subject ?pfs115 ;
rdf:predicate up:annotation ;
rdf:object ?annotation116 .
_:227940 a rdf:Statement ;
up:attribution _:227887 ;
rdf:subject ?pfs115 ;
rdf:predicate up:annotation ;
rdf:object ?annotation116 .
_:227941 a rdf:Statement ;
up:source unirule:MF_00583 ;
rdf:subject ?pfs122 ;
rdf:predicate up:annotation ;
rdf:object ?annotation123 .
_:227942 a rdf:Statement ;
up:attribution _:227888 ;
rdf:subject ?pfs122 ;
rdf:predicate up:annotation ;
rdf:object ?annotation123 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00583
#Rule MF_00583 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00583_B .
?thisOrganism rdfs:subClassOf+ taxon:2 .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00583_A .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
}
BIND(URI(CONCAT(STR(?this), '#MF_00583a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00583a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00583a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00583a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00583a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00583a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00583a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionP14193134 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP14193136 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP14193MF_00583_B129 .
?templateMotifSequenceMatchRegionP14193134 faldo:begin ?templateMotifSequenceMatchBeginP14193135 .
?templateMotifSequenceMatchBeginP14193135 faldo:position ?templateMotifSequenceMatchBeginPositionP14193130 ;
faldo:reference isoform:P14193-1 .
?templateMotifSequenceProfileAlignmentOperationP14193136 edam:has_input signature:MF_00583_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_B140 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP14193MF_00583_B131 .
?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_B139 .
?targetMotifMatchRegionMatchBeginMF_00583_B139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_B132 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00583_B140 edam:has_input signature:MF_00583_B ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagMetal) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14193MF_00583_B129, 1, (STRLEN(?templateMotifCigarP14193MF_00583_B129) - STRLEN(REPLACE(?templateMotifCigarP14193MF_00583_B129, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionP14193130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B131, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B131) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B131, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B131) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_B132) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00583a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionP14193149 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP14193151 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP14193MF_00583_B144 .
?templateMotifSequenceMatchRegionP14193149 faldo:begin ?templateMotifSequenceMatchBeginP14193150 .
?templateMotifSequenceMatchBeginP14193150 faldo:position ?templateMotifSequenceMatchBeginPositionP14193145 ;
faldo:reference isoform:P14193-1 .
?templateMotifSequenceProfileAlignmentOperationP14193151 edam:has_input signature:MF_00583_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_B155 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP14193MF_00583_B146 .
?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_B154 .
?targetMotifMatchRegionMatchBeginMF_00583_B154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_B147 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00583_B155 edam:has_input signature:MF_00583_B ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagDiv) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14193MF_00583_B144, 1, (STRLEN(?templateMotifCigarP14193MF_00583_B144) - STRLEN(REPLACE(?templateMotifCigarP14193MF_00583_B144, CONCAT('^(?:-*[^-]){', STR(((198 - ?templateMotifSequenceMatchBeginPositionP14193145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B146, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B146) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B146, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B146) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) .
BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_B147) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs2t158) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00583a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch163 faldo:location ?templateMotifSequenceMatchRegionQ97CA5164 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97CA5166 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ97CA5MF_00583_A159 .
?templateMotifSequenceMatchRegionQ97CA5164 faldo:begin ?templateMotifSequenceMatchBeginQ97CA5165 .
?templateMotifSequenceMatchBeginQ97CA5165 faldo:position ?templateMotifSequenceMatchBeginPositionQ97CA5160 ;
faldo:reference isoform:Q97CA5-1 .
?templateMotifSequenceProfileAlignmentOperationQ97CA5166 edam:has_input signature:MF_00583_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch167 faldo:location ?targetMotifMatchRegionMatch168 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_A170 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ97CA5MF_00583_A161 .
?targetMotifMatchRegionMatch168 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_A169 .
?targetMotifMatchRegionMatchBeginMF_00583_A169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_A162 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00583_A170 edam:has_input signature:MF_00583_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97CA5MF_00583_A159, 1, (STRLEN(?templateMotifCigarQ97CA5MF_00583_A159) - STRLEN(REPLACE(?templateMotifCigarQ97CA5MF_00583_A159, CONCAT('^(?:-*[^-]){', STR(((34 - ?templateMotifSequenceMatchBeginPositionQ97CA5160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A161, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A161) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A161, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A161) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) .
BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_A162) - 1) AS ?thisPositionOn37) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97CA5MF_00583_A159, 1, (STRLEN(?templateMotifCigarQ97CA5MF_00583_A159) - STRLEN(REPLACE(?templateMotifCigarQ97CA5MF_00583_A159, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionQ97CA5160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A161, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A161) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A161, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A161) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) .
BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_A162) - 1) AS ?thisPositionOn38) .
BIND(?this AS ?pfs3t175) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER (REGEX('D[ARNDCQEGHILKMFPSTWYVBZJUOX]E', SUBSTR(?thisSequenceValue, ?thisPositionOn37, (?thisPositionOn38 - ?thisPositionOn37)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00583a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch180 faldo:location ?templateMotifSequenceMatchRegionQ97CA5181 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97CA5183 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ97CA5MF_00583_A176 .
?templateMotifSequenceMatchRegionQ97CA5181 faldo:begin ?templateMotifSequenceMatchBeginQ97CA5182 .
?templateMotifSequenceMatchBeginQ97CA5182 faldo:position ?templateMotifSequenceMatchBeginPositionQ97CA5177 ;
faldo:reference isoform:Q97CA5-1 .
?templateMotifSequenceProfileAlignmentOperationQ97CA5183 edam:has_input signature:MF_00583_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch184 faldo:location ?targetMotifMatchRegionMatch185 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_A187 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ97CA5MF_00583_A178 .
?targetMotifMatchRegionMatch185 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_A186 .
?targetMotifMatchRegionMatchBeginMF_00583_A186 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_A179 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00583_A187 edam:has_input signature:MF_00583_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97CA5MF_00583_A176, 1, (STRLEN(?templateMotifCigarQ97CA5MF_00583_A176) - STRLEN(REPLACE(?templateMotifCigarQ97CA5MF_00583_A176, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionQ97CA5177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A178, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A178) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A178, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A178) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) .
BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_A179) - 1) AS ?thisPositionOn44) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97CA5MF_00583_A176, 1, (STRLEN(?templateMotifCigarQ97CA5MF_00583_A176) - STRLEN(REPLACE(?templateMotifCigarQ97CA5MF_00583_A176, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionQ97CA5177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A178, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A178) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A178, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A178) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) .
BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_A179) - 1) AS ?thisPositionOn45) .
BIND(?this AS ?pfs3t192) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, (?thisPositionOn45 - ?thisPositionOn44)) = 'RQ')) .
BIND(URI(CONCAT(STR(?this), '#MF_00583a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch197 faldo:location ?templateMotifSequenceMatchRegionQ97CA5198 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97CA5200 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ97CA5MF_00583_A193 .
?templateMotifSequenceMatchRegionQ97CA5198 faldo:begin ?templateMotifSequenceMatchBeginQ97CA5199 .
?templateMotifSequenceMatchBeginQ97CA5199 faldo:position ?templateMotifSequenceMatchBeginPositionQ97CA5194 ;
faldo:reference isoform:Q97CA5-1 .
?templateMotifSequenceProfileAlignmentOperationQ97CA5200 edam:has_input signature:MF_00583_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch201 faldo:location ?targetMotifMatchRegionMatch202 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_A204 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ97CA5MF_00583_A195 .
?targetMotifMatchRegionMatch202 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_A203 .
?targetMotifMatchRegionMatchBeginMF_00583_A203 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_A196 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00583_A204 edam:has_input signature:MF_00583_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97CA5MF_00583_A193, 1, (STRLEN(?templateMotifCigarQ97CA5MF_00583_A193) - STRLEN(REPLACE(?templateMotifCigarQ97CA5MF_00583_A193, CONCAT('^(?:-*[^-]){', STR(((214 - ?templateMotifSequenceMatchBeginPositionQ97CA5194) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1205) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A195, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A195) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A195, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A195) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), '')))), '[^-]', ''))) AS ?step2206) .
BIND(((?step2206 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_A196) - 1) AS ?thisPositionOn51) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97CA5MF_00583_A193, 1, (STRLEN(?templateMotifCigarQ97CA5MF_00583_A193) - STRLEN(REPLACE(?templateMotifCigarQ97CA5MF_00583_A193, CONCAT('^(?:-*[^-]){', STR(((218 - ?templateMotifSequenceMatchBeginPositionQ97CA5194) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1207) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A195, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A195) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A195, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A195) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A195, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), '')))), '[^-]', ''))) AS ?step2208) .
BIND(((?step2208 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_A196) - 1) AS ?thisPositionOn52) .
BIND(?this AS ?pfs3t209) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) .
FILTER (REGEX('STG[ARNDCQEGHILKMFPSTWYVBZJUOX]T', SUBSTR(?thisSequenceValue, ?thisPositionOn51, (?thisPositionOn52 - ?thisPositionOn51)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00583a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch214 faldo:location ?templateMotifSequenceMatchRegionQ97CA5215 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97CA5217 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ97CA5MF_00583_A210 .
?templateMotifSequenceMatchRegionQ97CA5215 faldo:begin ?templateMotifSequenceMatchBeginQ97CA5216 .
?templateMotifSequenceMatchBeginQ97CA5216 faldo:position ?templateMotifSequenceMatchBeginPositionQ97CA5211 ;
faldo:reference isoform:Q97CA5-1 .
?templateMotifSequenceProfileAlignmentOperationQ97CA5217 edam:has_input signature:MF_00583_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch218 faldo:location ?targetMotifMatchRegionMatch219 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_A221 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ97CA5MF_00583_A212 .
?targetMotifMatchRegionMatch219 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_A220 .
?targetMotifMatchRegionMatchBeginMF_00583_A220 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_A213 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00583_A221 edam:has_input signature:MF_00583_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97CA5MF_00583_A210, 1, (STRLEN(?templateMotifCigarQ97CA5MF_00583_A210) - STRLEN(REPLACE(?templateMotifCigarQ97CA5MF_00583_A210, CONCAT('^(?:-*[^-]){', STR(((184 - ?templateMotifSequenceMatchBeginPositionQ97CA5211) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1222) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A212, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A212) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A212, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A212) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A212, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), '')))), '[^-]', ''))) AS ?step2223) .
BIND(((?step2223 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_A213) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs3t224) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00583a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch229 faldo:location ?templateMotifSequenceMatchRegionQ97CA5230 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97CA5232 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ97CA5MF_00583_A225 .
?templateMotifSequenceMatchRegionQ97CA5230 faldo:begin ?templateMotifSequenceMatchBeginQ97CA5231 .
?templateMotifSequenceMatchBeginQ97CA5231 faldo:position ?templateMotifSequenceMatchBeginPositionQ97CA5226 ;
faldo:reference isoform:Q97CA5-1 .
?templateMotifSequenceProfileAlignmentOperationQ97CA5232 edam:has_input signature:MF_00583_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch233 faldo:location ?targetMotifMatchRegionMatch234 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_A236 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ97CA5MF_00583_A227 .
?targetMotifMatchRegionMatch234 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_A235 .
?targetMotifMatchRegionMatchBeginMF_00583_A235 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_A228 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00583_A236 edam:has_input signature:MF_00583_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97CA5MF_00583_A225, 1, (STRLEN(?templateMotifCigarQ97CA5MF_00583_A225) - STRLEN(REPLACE(?templateMotifCigarQ97CA5MF_00583_A225, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionQ97CA5226) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1237) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A227, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A227) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A227, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A227) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), '')))), '[^-]', ''))) AS ?step2238) .
BIND(((?step2238 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_A228) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs3t239) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00583a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch244 faldo:location ?templateMotifSequenceMatchRegionQ97CA5245 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97CA5247 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ97CA5MF_00583_A240 .
?templateMotifSequenceMatchRegionQ97CA5245 faldo:begin ?templateMotifSequenceMatchBeginQ97CA5246 .
?templateMotifSequenceMatchBeginQ97CA5246 faldo:position ?templateMotifSequenceMatchBeginPositionQ97CA5241 ;
faldo:reference isoform:Q97CA5-1 .
?templateMotifSequenceProfileAlignmentOperationQ97CA5247 edam:has_input signature:MF_00583_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch248 faldo:location ?targetMotifMatchRegionMatch249 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_A251 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ97CA5MF_00583_A242 .
?targetMotifMatchRegionMatch249 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_A250 .
?targetMotifMatchRegionMatchBeginMF_00583_A250 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_A243 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00583_A251 edam:has_input signature:MF_00583_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97CA5MF_00583_A240, 1, (STRLEN(?templateMotifCigarQ97CA5MF_00583_A240) - STRLEN(REPLACE(?templateMotifCigarQ97CA5MF_00583_A240, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionQ97CA5241) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1252) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A242, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A242) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A242, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A242) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), '')))), '[^-]', ''))) AS ?step2253) .
BIND(((?step2253 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_A243) - 1) AS ?thisPositionOn71) .
BIND(?thisPositionOn71 AS ?thisPositionOn72) .
BIND(?this AS ?pfs3t254) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse69) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00583a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch259 faldo:location ?templateMotifSequenceMatchRegionQ97CA5260 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97CA5262 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ97CA5MF_00583_A255 .
?templateMotifSequenceMatchRegionQ97CA5260 faldo:begin ?templateMotifSequenceMatchBeginQ97CA5261 .
?templateMotifSequenceMatchBeginQ97CA5261 faldo:position ?templateMotifSequenceMatchBeginPositionQ97CA5256 ;
faldo:reference isoform:Q97CA5-1 .
?templateMotifSequenceProfileAlignmentOperationQ97CA5262 edam:has_input signature:MF_00583_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch263 faldo:location ?targetMotifMatchRegionMatch264 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_A266 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ97CA5MF_00583_A257 .
?targetMotifMatchRegionMatch264 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_A265 .
?targetMotifMatchRegionMatchBeginMF_00583_A265 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_A258 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00583_A266 edam:has_input signature:MF_00583_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97CA5MF_00583_A255, 1, (STRLEN(?templateMotifCigarQ97CA5MF_00583_A255) - STRLEN(REPLACE(?templateMotifCigarQ97CA5MF_00583_A255, CONCAT('^(?:-*[^-]){', STR(((186 - ?templateMotifSequenceMatchBeginPositionQ97CA5256) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1267) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A257, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A257) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A257, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A257) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), '')))), '[^-]', ''))) AS ?step2268) .
BIND(((?step2268 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_A258) - 1) AS ?thisPositionOn78) .
BIND(?thisPositionOn78 AS ?thisPositionOn79) .
BIND(?this AS ?pfs3t269) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse76) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00583a74')) AS ?annotation74) .
BIND(?this AS ?pfs73) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch274 faldo:location ?templateMotifSequenceMatchRegionQ97CA5275 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97CA5277 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ97CA5MF_00583_A270 .
?templateMotifSequenceMatchRegionQ97CA5275 faldo:begin ?templateMotifSequenceMatchBeginQ97CA5276 .
?templateMotifSequenceMatchBeginQ97CA5276 faldo:position ?templateMotifSequenceMatchBeginPositionQ97CA5271 ;
faldo:reference isoform:Q97CA5-1 .
?templateMotifSequenceProfileAlignmentOperationQ97CA5277 edam:has_input signature:MF_00583_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch278 faldo:location ?targetMotifMatchRegionMatch279 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_A281 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ97CA5MF_00583_A272 .
?targetMotifMatchRegionMatch279 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_A280 .
?targetMotifMatchRegionMatchBeginMF_00583_A280 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_A273 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00583_A281 edam:has_input signature:MF_00583_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97CA5MF_00583_A270, 1, (STRLEN(?templateMotifCigarQ97CA5MF_00583_A270) - STRLEN(REPLACE(?templateMotifCigarQ97CA5MF_00583_A270, CONCAT('^(?:-*[^-]){', STR(((210 - ?templateMotifSequenceMatchBeginPositionQ97CA5271) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1282) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A272, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A272) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97CA5MF_00583_A272, 1, (STRLEN(?targetMotifMatchCigarQ97CA5MF_00583_A272) - STRLEN(REPLACE(?targetMotifMatchCigarQ97CA5MF_00583_A272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), '')))), '[^-]', ''))) AS ?step2283) .
BIND(((?step2283 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_A273) - 1) AS ?thisPositionOn85) .
BIND(?thisPositionOn85 AS ?thisPositionOn86) .
BIND(?this AS ?pfs3t284) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse83) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn85, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00583a81')) AS ?annotation81) .
BIND(?this AS ?pfs80) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch289 faldo:location ?templateMotifSequenceMatchRegionP14193290 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP14193292 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP14193MF_00583_B285 .
?templateMotifSequenceMatchRegionP14193290 faldo:begin ?templateMotifSequenceMatchBeginP14193291 .
?templateMotifSequenceMatchBeginP14193291 faldo:position ?templateMotifSequenceMatchBeginPositionP14193286 ;
faldo:reference isoform:P14193-1 .
?templateMotifSequenceProfileAlignmentOperationP14193292 edam:has_input signature:MF_00583_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch293 faldo:location ?targetMotifMatchRegionMatch294 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_B296 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP14193MF_00583_B287 .
?targetMotifMatchRegionMatch294 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_B295 .
?targetMotifMatchRegionMatchBeginMF_00583_B295 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_B288 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00583_B296 edam:has_input signature:MF_00583_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14193MF_00583_B285, 1, (STRLEN(?templateMotifCigarP14193MF_00583_B285) - STRLEN(REPLACE(?templateMotifCigarP14193MF_00583_B285, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionP14193286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1297) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B287, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B287) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B287, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B287) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), '')))), '[^-]', ''))) AS ?step2298) .
BIND(((?step2298 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_B288) - 1) AS ?thisPositionOn92) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14193MF_00583_B285, 1, (STRLEN(?templateMotifCigarP14193MF_00583_B285) - STRLEN(REPLACE(?templateMotifCigarP14193MF_00583_B285, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionP14193286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1299) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B287, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B287) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1299), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B287, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B287) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1299), '}'), '')))), '[^-]', ''))) AS ?step2300) .
BIND(((?step2300 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_B288) - 1) AS ?thisPositionOn93) .
BIND(?this AS ?pfs4t301) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse90) .
FILTER (REGEX('[DN][ARNDCQEGHILKMFPSTWYVBZJUOX][EN]', SUBSTR(?thisSequenceValue, ?thisPositionOn92, (?thisPositionOn93 - ?thisPositionOn92)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00583a88')) AS ?annotation88) .
BIND(?this AS ?pfs87) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch306 faldo:location ?templateMotifSequenceMatchRegionP14193307 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP14193309 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP14193MF_00583_B302 .
?templateMotifSequenceMatchRegionP14193307 faldo:begin ?templateMotifSequenceMatchBeginP14193308 .
?templateMotifSequenceMatchBeginP14193308 faldo:position ?templateMotifSequenceMatchBeginPositionP14193303 ;
faldo:reference isoform:P14193-1 .
?templateMotifSequenceProfileAlignmentOperationP14193309 edam:has_input signature:MF_00583_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch310 faldo:location ?targetMotifMatchRegionMatch311 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_B313 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP14193MF_00583_B304 .
?targetMotifMatchRegionMatch311 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_B312 .
?targetMotifMatchRegionMatchBeginMF_00583_B312 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_B305 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00583_B313 edam:has_input signature:MF_00583_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14193MF_00583_B302, 1, (STRLEN(?templateMotifCigarP14193MF_00583_B302) - STRLEN(REPLACE(?templateMotifCigarP14193MF_00583_B302, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP14193303) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1314) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B304, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B304) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1314), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B304, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B304) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1314), '}'), '')))), '[^-]', ''))) AS ?step2315) .
BIND(((?step2315 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_B305) - 1) AS ?thisPositionOn99) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14193MF_00583_B302, 1, (STRLEN(?templateMotifCigarP14193MF_00583_B302) - STRLEN(REPLACE(?templateMotifCigarP14193MF_00583_B302, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionP14193303) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1316) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B304, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B304) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1316), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B304, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B304) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B304, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1316), '}'), '')))), '[^-]', ''))) AS ?step2317) .
BIND(((?step2317 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_B305) - 1) AS ?thisPositionOn100) .
BIND(?this AS ?pfs4t318) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfsb96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfse97) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn99, (?thisPositionOn100 - ?thisPositionOn99)) = 'RQ')) .
BIND(URI(CONCAT(STR(?this), '#MF_00583a95')) AS ?annotation95) .
BIND(?this AS ?pfs94) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch323 faldo:location ?templateMotifSequenceMatchRegionP14193324 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP14193326 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP14193MF_00583_B319 .
?templateMotifSequenceMatchRegionP14193324 faldo:begin ?templateMotifSequenceMatchBeginP14193325 .
?templateMotifSequenceMatchBeginP14193325 faldo:position ?templateMotifSequenceMatchBeginPositionP14193320 ;
faldo:reference isoform:P14193-1 .
?templateMotifSequenceProfileAlignmentOperationP14193326 edam:has_input signature:MF_00583_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch327 faldo:location ?targetMotifMatchRegionMatch328 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_B330 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP14193MF_00583_B321 .
?targetMotifMatchRegionMatch328 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_B329 .
?targetMotifMatchRegionMatchBeginMF_00583_B329 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_B322 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00583_B330 edam:has_input signature:MF_00583_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14193MF_00583_B319, 1, (STRLEN(?templateMotifCigarP14193MF_00583_B319) - STRLEN(REPLACE(?templateMotifCigarP14193MF_00583_B319, CONCAT('^(?:-*[^-]){', STR(((228 - ?templateMotifSequenceMatchBeginPositionP14193320) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1331) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B321, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B321) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1331), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B321, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B321) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1331), '}'), '')))), '[^-]', ''))) AS ?step2332) .
BIND(((?step2332 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_B322) - 1) AS ?thisPositionOn106) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14193MF_00583_B319, 1, (STRLEN(?templateMotifCigarP14193MF_00583_B319) - STRLEN(REPLACE(?templateMotifCigarP14193MF_00583_B319, CONCAT('^(?:-*[^-]){', STR(((232 - ?templateMotifSequenceMatchBeginPositionP14193320) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1333) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B321, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B321) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1333), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B321, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B321) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1333), '}'), '')))), '[^-]', ''))) AS ?step2334) .
BIND(((?step2334 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_B322) - 1) AS ?thisPositionOn107) .
BIND(?this AS ?pfs4t335) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfsb103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfse104) .
FILTER (REGEX('[DN][TS][AG][ARNDCQEGHILKMFPSTWYVBZJUOX][TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn106, (?thisPositionOn107 - ?thisPositionOn106)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00583a102')) AS ?annotation102) .
BIND(?this AS ?pfs101) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch340 faldo:location ?templateMotifSequenceMatchRegionP14193341 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP14193343 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP14193MF_00583_B336 .
?templateMotifSequenceMatchRegionP14193341 faldo:begin ?templateMotifSequenceMatchBeginP14193342 .
?templateMotifSequenceMatchBeginP14193342 faldo:position ?templateMotifSequenceMatchBeginPositionP14193337 ;
faldo:reference isoform:P14193-1 .
?templateMotifSequenceProfileAlignmentOperationP14193343 edam:has_input signature:MF_00583_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch344 faldo:location ?targetMotifMatchRegionMatch345 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_B347 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP14193MF_00583_B338 .
?targetMotifMatchRegionMatch345 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_B346 .
?targetMotifMatchRegionMatchBeginMF_00583_B346 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_B339 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00583_B347 edam:has_input signature:MF_00583_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14193MF_00583_B336, 1, (STRLEN(?templateMotifCigarP14193MF_00583_B336) - STRLEN(REPLACE(?templateMotifCigarP14193MF_00583_B336, CONCAT('^(?:-*[^-]){', STR(((136 - ?templateMotifSequenceMatchBeginPositionP14193337) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1348) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B338, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B338) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B338, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1348), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B338, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B338) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B338, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1348), '}'), '')))), '[^-]', ''))) AS ?step2349) .
BIND(((?step2349 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_B339) - 1) AS ?thisPositionOn113) .
BIND(?thisPositionOn113 AS ?thisPositionOn114) .
BIND(?this AS ?pfs4t350) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfsb110) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfse111) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn113, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00583a109')) AS ?annotation109) .
BIND(?this AS ?pfs108) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch355 faldo:location ?templateMotifSequenceMatchRegionP14193356 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP14193358 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP14193MF_00583_B351 .
?templateMotifSequenceMatchRegionP14193356 faldo:begin ?templateMotifSequenceMatchBeginP14193357 .
?templateMotifSequenceMatchBeginP14193357 faldo:position ?templateMotifSequenceMatchBeginPositionP14193352 ;
faldo:reference isoform:P14193-1 .
?templateMotifSequenceProfileAlignmentOperationP14193358 edam:has_input signature:MF_00583_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch359 faldo:location ?targetMotifMatchRegionMatch360 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_B362 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP14193MF_00583_B353 .
?targetMotifMatchRegionMatch360 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_B361 .
?targetMotifMatchRegionMatchBeginMF_00583_B361 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_B354 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00583_B362 edam:has_input signature:MF_00583_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14193MF_00583_B351, 1, (STRLEN(?templateMotifCigarP14193MF_00583_B351) - STRLEN(REPLACE(?templateMotifCigarP14193MF_00583_B351, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP14193352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1363) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B353, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B353) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1363), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B353, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B353) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1363), '}'), '')))), '[^-]', ''))) AS ?step2364) .
BIND(((?step2364 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_B354) - 1) AS ?thisPositionOn120) .
BIND(?thisPositionOn120 AS ?thisPositionOn121) .
BIND(?this AS ?pfs4t365) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfsb117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfse118) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn120, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00583a116')) AS ?annotation116) .
BIND(?this AS ?pfs115) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch370 faldo:location ?templateMotifSequenceMatchRegionP14193371 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP14193373 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP14193MF_00583_B366 .
?templateMotifSequenceMatchRegionP14193371 faldo:begin ?templateMotifSequenceMatchBeginP14193372 .
?templateMotifSequenceMatchBeginP14193372 faldo:position ?templateMotifSequenceMatchBeginPositionP14193367 ;
faldo:reference isoform:P14193-1 .
?templateMotifSequenceProfileAlignmentOperationP14193373 edam:has_input signature:MF_00583_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch374 faldo:location ?targetMotifMatchRegionMatch375 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00583_B377 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP14193MF_00583_B368 .
?targetMotifMatchRegionMatch375 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00583_B376 .
?targetMotifMatchRegionMatchBeginMF_00583_B376 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00583_B369 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00583_B377 edam:has_input signature:MF_00583_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP14193MF_00583_B366, 1, (STRLEN(?templateMotifCigarP14193MF_00583_B366) - STRLEN(REPLACE(?templateMotifCigarP14193MF_00583_B366, CONCAT('^(?:-*[^-]){', STR(((224 - ?templateMotifSequenceMatchBeginPositionP14193367) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1378) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B368, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B368) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B368, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1378), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP14193MF_00583_B368, 1, (STRLEN(?targetMotifMatchCigarP14193MF_00583_B368) - STRLEN(REPLACE(?targetMotifMatchCigarP14193MF_00583_B368, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1378), '}'), '')))), '[^-]', ''))) AS ?step2379) .
BIND(((?step2379 + ?targetMotifMatchRegionMatchBeginPositionMF_00583_B369) - 1) AS ?thisPositionOn127) .
BIND(?thisPositionOn127 AS ?thisPositionOn128) .
BIND(?this AS ?pfs4t380) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfsb124) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfse125) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn127, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00583a123')) AS ?annotation123) .
BIND(?this AS ?pfs122) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2157 .
})) .
BIND(?this AS ?case12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2 .
})) .
BIND(?this AS ?caseWithTag381) .
BIND(URI(CONCAT(STR(?this), '#MF_00583a14')) AS ?name14) .
}
BIND(IF(BOUND(?tagDiv), ?caseWithTag381, ?UNBOUND_VARIABLE) AS ?case13) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(?this AS ?caseWithTag382) .
BIND(URI(CONCAT(STR(?this), '#MF_00583a16')) AS ?name16) .
}
BIND(IF(BOUND(?tagDiv), ?caseWithTag382, ?UNBOUND_VARIABLE) AS ?case15) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2 .
})) .
BIND(?this AS ?caseWithTag383) .
}
BIND(IF(BOUND(?tagMetal), ?caseWithTag383, ?UNBOUND_VARIABLE) AS ?case17) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(?this AS ?caseWithTag384) .
}
BIND(IF(BOUND(?tagMetal), ?caseWithTag384, ?UNBOUND_VARIABLE) AS ?case18) .
}
"xsd:string |
