| http://purl.uniprot.org/unirules/MF_00804#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:287511 up:source unirule:MF_00804 .
_:287512 up:source unirule:MF_00804 .
_:287513 up:source unirule:MF_00804 .
_:287514 up:source unirule:MF_00804 .
_:287515 up:source unirule:MF_00804 .
_:287516 up:source unirule:MF_00804 .
_:287517 up:source unirule:MF_00804 .
_:287518 up:source unirule:MF_00804 .
_:287519 up:source unirule:MF_00804 .
_:287520 up:source unirule:MF_00804 .
_:287521 up:source unirule:MF_00804 .
_:287522 up:source unirule:MF_00804 .
_:287523 up:source unirule:MF_00804 .
_:287524 up:source unirule:MF_00804 .
_:287525 up:source unirule:MF_00804 .
_:287526 up:source unirule:MF_00804 .
_:287527 up:source unirule:MF_00804 .
_:287528 up:source unirule:MF_00804 .
_:287529 up:source unirule:MF_00804 .
_:287530 up:source unirule:MF_00804 .
_:287531 up:source unirule:MF_00804 .
_:287532 up:source unirule:MF_00804 .
_:287533 up:source unirule:MF_00804 .
_:287534 up:source unirule:MF_00804 .
_:287535 up:source unirule:MF_00804 .
_:287536 up:source unirule:MF_00804 .
_:287537 up:source unirule:MF_00804 .
_:287538 up:source unirule:MF_00804 .
_:287539 up:source unirule:MF_00804 .
_:287540 up:source unirule:MF_00804 .
_:287541 up:source unirule:MF_00804 .
_:287542 up:source unirule:MF_00804 .
_:287543 up:source unirule:MF_00804 .
_:287544 up:source unirule:MF_00804 .
_:287545 up:source unirule:MF_00804 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0008802 ,
GO:0019285 ,
keyword:479 ,
keyword:520 ,
keyword:521 ,
keyword:558 ,
keyword:560 ,
keyword:630 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.2.1.8' ;
up:fullName 'Betaine aldehyde dehydrogenase' ;
up:shortName 'BADH' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'betB' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the irreversible oxidation of betaine aldehyde to the corresponding acid.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:29103 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 potassium ions per subunit.' .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Amine and polyamine biosynthesis; betaine biosynthesis via choline pathway; betaine from betaine aldehyde: step 1/1.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Dimer of dimers.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the aldehyde dehydrogenase family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:57540 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:57540 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:57540 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Charge relay system' .
?pfsb32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Charge relay system' .
?pfsb50 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:29103 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf chebi:29103 .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf chebi:29103 .
?pfs75 up:annotation ?annotation76 .
?annotation76 faldo:begin ?pfsb77 ;
faldo:end ?pfse78 ;
up:ligand ?ligand79 ;
rdf:type up:Binding_Site_Annotation .
?pfsb77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?ligand79 rdfs:subClassOf chebi:29103 .
?pfs82 up:annotation ?annotation83 .
?annotation83 faldo:begin ?pfsb84 ;
faldo:end ?pfse85 ;
up:ligand ?ligand86 ;
rdf:type up:Binding_Site_Annotation .
?pfsb84 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfse85 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?ligand86 rdfs:subClassOf chebi:29103 .
?pfs89 up:annotation ?annotation90 .
?annotation90 faldo:begin ?pfsb91 ;
faldo:end ?pfse92 ;
up:ligand ?ligand93 ;
rdf:type up:Binding_Site_Annotation .
?pfsb91 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?pfse92 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?ligand93 rdfs:subClassOf chebi:29103 .
?pfs96 up:annotation ?annotation97 .
?annotation97 faldo:begin ?pfsb98 ;
faldo:end ?pfse99 ;
up:ligand ?ligand100 ;
rdf:type up:Binding_Site_Annotation .
?pfsb98 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?pfse99 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?ligand100 rdfs:subClassOf chebi:29103 .
?pfs103 up:annotation ?annotation104 .
?annotation104 faldo:begin ?pfsb105 ;
faldo:end ?pfse106 ;
up:ligand ?ligand107 ;
rdf:type up:Binding_Site_Annotation .
?pfsb105 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?pfse106 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?ligand107 rdfs:subClassOf chebi:57540 .
?pfs110 up:annotation ?annotation111 .
?annotation111 faldo:begin ?pfsb112 ;
faldo:end ?pfse113 ;
up:ligand ?ligand114 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'covalent' .
?pfsb112 faldo:position ?thisPositionOn115 ;
rdf:type faldo:ExactPosition .
?pfse113 faldo:position ?thisPositionOn116 ;
rdf:type faldo:ExactPosition .
?ligand114 rdfs:subClassOf chebi:57540 .
?pfs117 up:annotation ?annotation118 .
?annotation118 faldo:begin ?pfsb119 ;
faldo:end ?pfse120 ;
up:ligand ?ligand121 ;
rdf:type up:Binding_Site_Annotation .
?pfsb119 faldo:position ?thisPositionOn122 ;
rdf:type faldo:ExactPosition .
?pfse120 faldo:position ?thisPositionOn123 ;
rdf:type faldo:ExactPosition .
?ligand121 rdfs:subClassOf chebi:57540 .
?pfs124 up:annotation ?annotation125 .
?annotation125 faldo:begin ?pfsb126 ;
faldo:end ?pfse127 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Seems to be a necessary countercharge to the potassium cations' .
?pfsb126 faldo:position ?thisPositionOn128 ;
rdf:type faldo:ExactPosition .
?pfse127 faldo:position ?thisPositionOn129 ;
rdf:type faldo:ExactPosition .
?pfs130 up:annotation ?annotation131 .
?annotation131 faldo:begin ?pfsb132 ;
faldo:end ?pfse133 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Cysteine sulfenic acid (-SOH)' .
?pfsb132 faldo:position ?thisPositionOn134 ;
rdf:type faldo:ExactPosition .
?pfse133 faldo:position ?thisPositionOn135 ;
rdf:type faldo:ExactPosition .
_:287546 a rdf:Statement ;
up:attribution _:287511 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:287547 a rdf:Statement ;
up:attribution _:287512 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:287548 a rdf:Statement ;
up:attribution _:287513 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:287549 a rdf:Statement ;
up:attribution _:287514 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:287550 a rdf:Statement ;
up:attribution _:287515 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:287551 a rdf:Statement ;
up:attribution _:287516 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:287552 a rdf:Statement ;
up:attribution _:287517 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:287553 a rdf:Statement ;
up:attribution _:287518 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:287554 a rdf:Statement ;
up:attribution _:287519 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:287555 a rdf:Statement ;
up:attribution _:287520 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:287556 a rdf:Statement ;
up:attribution _:287521 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:287557 a rdf:Statement ;
up:attribution _:287522 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:558 .
_:287558 a rdf:Statement ;
up:attribution _:287523 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:287559 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:630 .
_:287560 a rdf:Statement ;
up:attribution _:287525 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008802 .
_:287561 a rdf:Statement ;
up:attribution _:287526 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019285 .
_:287562 a rdf:Statement ;
up:source unirule:MF_00804 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:287563 a rdf:Statement ;
up:attribution _:287527 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:287564 a rdf:Statement ;
up:source unirule:MF_00804 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:287565 a rdf:Statement ;
up:attribution _:287528 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:287566 a rdf:Statement ;
up:source unirule:MF_00804 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:287567 a rdf:Statement ;
up:attribution _:287529 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:287568 a rdf:Statement ;
up:source unirule:MF_00804 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:287569 a rdf:Statement ;
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rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:287570 a rdf:Statement ;
up:source unirule:MF_00804 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:287571 a rdf:Statement ;
up:attribution _:287531 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:287572 a rdf:Statement ;
up:source unirule:MF_00804 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:287573 a rdf:Statement ;
up:attribution _:287532 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:287574 a rdf:Statement ;
up:source unirule:MF_00804 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:287575 a rdf:Statement ;
up:attribution _:287533 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:287576 a rdf:Statement ;
up:source unirule:MF_00804 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:287577 a rdf:Statement ;
up:attribution _:287534 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:287578 a rdf:Statement ;
up:source unirule:MF_00804 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:287579 a rdf:Statement ;
up:attribution _:287535 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:287580 a rdf:Statement ;
up:source unirule:MF_00804 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:287581 a rdf:Statement ;
up:attribution _:287536 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:287582 a rdf:Statement ;
up:source unirule:MF_00804 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:287583 a rdf:Statement ;
up:attribution _:287537 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:287584 a rdf:Statement ;
up:source unirule:MF_00804 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:287585 a rdf:Statement ;
up:attribution _:287538 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:287586 a rdf:Statement ;
up:source unirule:MF_00804 ;
rdf:subject ?pfs89 ;
rdf:predicate up:annotation ;
rdf:object ?annotation90 .
_:287587 a rdf:Statement ;
up:attribution _:287539 ;
rdf:subject ?pfs89 ;
rdf:predicate up:annotation ;
rdf:object ?annotation90 .
_:287588 a rdf:Statement ;
up:source unirule:MF_00804 ;
rdf:subject ?pfs96 ;
rdf:predicate up:annotation ;
rdf:object ?annotation97 .
_:287589 a rdf:Statement ;
up:attribution _:287540 ;
rdf:subject ?pfs96 ;
rdf:predicate up:annotation ;
rdf:object ?annotation97 .
_:287590 a rdf:Statement ;
up:source unirule:MF_00804 ;
rdf:subject ?pfs103 ;
rdf:predicate up:annotation ;
rdf:object ?annotation104 .
_:287591 a rdf:Statement ;
up:attribution _:287541 ;
rdf:subject ?pfs103 ;
rdf:predicate up:annotation ;
rdf:object ?annotation104 .
_:287592 a rdf:Statement ;
up:source unirule:MF_00804 ;
rdf:subject ?pfs110 ;
rdf:predicate up:annotation ;
rdf:object ?annotation111 .
_:287593 a rdf:Statement ;
up:attribution _:287542 ;
rdf:subject ?pfs110 ;
rdf:predicate up:annotation ;
rdf:object ?annotation111 .
_:287594 a rdf:Statement ;
up:source unirule:MF_00804 ;
rdf:subject ?pfs117 ;
rdf:predicate up:annotation ;
rdf:object ?annotation118 .
_:287595 a rdf:Statement ;
up:attribution _:287543 ;
rdf:subject ?pfs117 ;
rdf:predicate up:annotation ;
rdf:object ?annotation118 .
_:287596 a rdf:Statement ;
up:source unirule:MF_00804 ;
rdf:subject ?pfs124 ;
rdf:predicate up:annotation ;
rdf:object ?annotation125 .
_:287597 a rdf:Statement ;
up:attribution _:287544 ;
rdf:subject ?pfs124 ;
rdf:predicate up:annotation ;
rdf:object ?annotation125 .
_:287598 a rdf:Statement ;
up:source unirule:MF_00804 ;
rdf:subject ?pfs130 ;
rdf:predicate up:annotation ;
rdf:object ?annotation131 .
_:287599 a rdf:Statement ;
up:attribution _:287545 ;
rdf:subject ?pfs130 ;
rdf:predicate up:annotation ;
rdf:object ?annotation131 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00804
#Rule MF_00804 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00804 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_00804a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch140 faldo:location ?templateMotifSequenceMatchRegionP17445141 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17445143 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17445MF_00804136 .
?templateMotifSequenceMatchRegionP17445141 faldo:begin ?templateMotifSequenceMatchBeginP17445142 .
?templateMotifSequenceMatchBeginP17445142 faldo:position ?templateMotifSequenceMatchBeginPositionP17445137 ;
faldo:reference isoform:P17445-1 .
?templateMotifSequenceProfileAlignmentOperationP17445143 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
?targetMotifMatch144 faldo:location ?targetMotifMatchRegionMatch145 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00804147 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17445MF_00804138 .
?targetMotifMatchRegionMatch145 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00804146 .
?targetMotifMatchRegionMatchBeginMF_00804146 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00804139 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00804147 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17445MF_00804136, 1, (STRLEN(?templateMotifCigarP17445MF_00804136) - STRLEN(REPLACE(?templateMotifCigarP17445MF_00804136, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionP17445137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17445MF_00804138, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804138) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17445MF_00804138, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804138) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), '')))), '[^-]', ''))) AS ?step2149) .
BIND(((?step2149 + ?targetMotifMatchRegionMatchBeginPositionMF_00804139) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17445MF_00804136, 1, (STRLEN(?templateMotifCigarP17445MF_00804136) - STRLEN(REPLACE(?templateMotifCigarP17445MF_00804136, CONCAT('^(?:-*[^-]){', STR(((152 - ?templateMotifSequenceMatchBeginPositionP17445137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17445MF_00804138, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804138) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17445MF_00804138, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804138) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1150), '}'), '')))), '[^-]', ''))) AS ?step2151) .
BIND(((?step2151 + ?targetMotifMatchRegionMatchBeginPositionMF_00804139) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t152) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)) = 'GAW')) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch157 faldo:location ?templateMotifSequenceMatchRegionP17445158 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17445160 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17445MF_00804153 .
?templateMotifSequenceMatchRegionP17445158 faldo:begin ?templateMotifSequenceMatchBeginP17445159 .
?templateMotifSequenceMatchBeginP17445159 faldo:position ?templateMotifSequenceMatchBeginPositionP17445154 ;
faldo:reference isoform:P17445-1 .
?templateMotifSequenceProfileAlignmentOperationP17445160 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
?targetMotifMatch161 faldo:location ?targetMotifMatchRegionMatch162 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00804164 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17445MF_00804155 .
?targetMotifMatchRegionMatch162 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00804163 .
?targetMotifMatchRegionMatchBeginMF_00804163 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00804156 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00804164 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17445MF_00804153, 1, (STRLEN(?templateMotifCigarP17445MF_00804153) - STRLEN(REPLACE(?templateMotifCigarP17445MF_00804153, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionP17445154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17445MF_00804155, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804155) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17445MF_00804155, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804155) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_00804156) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17445MF_00804153, 1, (STRLEN(?templateMotifCigarP17445MF_00804153) - STRLEN(REPLACE(?templateMotifCigarP17445MF_00804153, CONCAT('^(?:-*[^-]){', STR(((179 - ?templateMotifSequenceMatchBeginPositionP17445154) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17445MF_00804155, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804155) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17445MF_00804155, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804155) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804155, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) .
BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_00804156) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t169) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)) = 'KPSE')) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch174 faldo:location ?templateMotifSequenceMatchRegionP17445175 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17445177 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17445MF_00804170 .
?templateMotifSequenceMatchRegionP17445175 faldo:begin ?templateMotifSequenceMatchBeginP17445176 .
?templateMotifSequenceMatchBeginP17445176 faldo:position ?templateMotifSequenceMatchBeginPositionP17445171 ;
faldo:reference isoform:P17445-1 .
?templateMotifSequenceProfileAlignmentOperationP17445177 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
?targetMotifMatch178 faldo:location ?targetMotifMatchRegionMatch179 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00804181 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17445MF_00804172 .
?targetMotifMatchRegionMatch179 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00804180 .
?targetMotifMatchRegionMatchBeginMF_00804180 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00804173 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00804181 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17445MF_00804170, 1, (STRLEN(?templateMotifCigarP17445MF_00804170) - STRLEN(REPLACE(?templateMotifCigarP17445MF_00804170, CONCAT('^(?:-*[^-]){', STR(((230 - ?templateMotifSequenceMatchBeginPositionP17445171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17445MF_00804172, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804172) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17445MF_00804172, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804172) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) .
BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_00804173) - 1) AS ?thisPositionOn28) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17445MF_00804170, 1, (STRLEN(?templateMotifCigarP17445MF_00804170) - STRLEN(REPLACE(?templateMotifCigarP17445MF_00804170, CONCAT('^(?:-*[^-]){', STR(((233 - ?templateMotifSequenceMatchBeginPositionP17445171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17445MF_00804172, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804172) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17445MF_00804172, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804172) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), '')))), '[^-]', ''))) AS ?step2185) .
BIND(((?step2185 + ?targetMotifMatchRegionMatchBeginPositionMF_00804173) - 1) AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t186) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn28, (?thisPositionOn29 - ?thisPositionOn28)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch191 faldo:location ?templateMotifSequenceMatchRegionP17445192 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17445194 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17445MF_00804187 .
?templateMotifSequenceMatchRegionP17445192 faldo:begin ?templateMotifSequenceMatchBeginP17445193 .
?templateMotifSequenceMatchBeginP17445193 faldo:position ?templateMotifSequenceMatchBeginPositionP17445188 ;
faldo:reference isoform:P17445-1 .
?templateMotifSequenceProfileAlignmentOperationP17445194 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
?targetMotifMatch195 faldo:location ?targetMotifMatchRegionMatch196 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00804198 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17445MF_00804189 .
?targetMotifMatchRegionMatch196 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00804197 .
?targetMotifMatchRegionMatchBeginMF_00804197 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00804190 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00804198 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17445MF_00804187, 1, (STRLEN(?templateMotifCigarP17445MF_00804187) - STRLEN(REPLACE(?templateMotifCigarP17445MF_00804187, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionP17445188) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17445MF_00804189, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804189) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17445MF_00804189, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804189) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), '')))), '[^-]', ''))) AS ?step2200) .
BIND(((?step2200 + ?targetMotifMatchRegionMatchBeginPositionMF_00804190) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t201) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch206 faldo:location ?templateMotifSequenceMatchRegionP17445207 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17445209 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17445MF_00804202 .
?templateMotifSequenceMatchRegionP17445207 faldo:begin ?templateMotifSequenceMatchBeginP17445208 .
?templateMotifSequenceMatchBeginP17445208 faldo:position ?templateMotifSequenceMatchBeginPositionP17445203 ;
faldo:reference isoform:P17445-1 .
?templateMotifSequenceProfileAlignmentOperationP17445209 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
?targetMotifMatch210 faldo:location ?targetMotifMatchRegionMatch211 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00804213 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17445MF_00804204 .
?targetMotifMatchRegionMatch211 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00804212 .
?targetMotifMatchRegionMatchBeginMF_00804212 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00804205 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00804213 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17445MF_00804202, 1, (STRLEN(?templateMotifCigarP17445MF_00804202) - STRLEN(REPLACE(?templateMotifCigarP17445MF_00804202, CONCAT('^(?:-*[^-]){', STR(((252 - ?templateMotifSequenceMatchBeginPositionP17445203) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1214) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17445MF_00804204, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804204) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17445MF_00804204, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804204) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), '')))), '[^-]', ''))) AS ?step2215) .
BIND(((?step2215 + ?targetMotifMatchRegionMatchBeginPositionMF_00804205) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t216) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch221 faldo:location ?templateMotifSequenceMatchRegionP17445222 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17445224 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17445MF_00804217 .
?templateMotifSequenceMatchRegionP17445222 faldo:begin ?templateMotifSequenceMatchBeginP17445223 .
?templateMotifSequenceMatchBeginP17445223 faldo:position ?templateMotifSequenceMatchBeginPositionP17445218 ;
faldo:reference isoform:P17445-1 .
?templateMotifSequenceProfileAlignmentOperationP17445224 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
?targetMotifMatch225 faldo:location ?targetMotifMatchRegionMatch226 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00804228 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17445MF_00804219 .
?targetMotifMatchRegionMatch226 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00804227 .
?targetMotifMatchRegionMatchBeginMF_00804227 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00804220 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00804228 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17445MF_00804217, 1, (STRLEN(?templateMotifCigarP17445MF_00804217) - STRLEN(REPLACE(?templateMotifCigarP17445MF_00804217, CONCAT('^(?:-*[^-]){', STR(((286 - ?templateMotifSequenceMatchBeginPositionP17445218) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1229) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17445MF_00804219, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804219) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17445MF_00804219, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804219) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804219, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1229), '}'), '')))), '[^-]', ''))) AS ?step2230) .
BIND(((?step2230 + ?targetMotifMatchRegionMatchBeginPositionMF_00804220) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t231) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch236 faldo:location ?templateMotifSequenceMatchRegionP17445237 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17445239 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17445MF_00804232 .
?templateMotifSequenceMatchRegionP17445237 faldo:begin ?templateMotifSequenceMatchBeginP17445238 .
?templateMotifSequenceMatchBeginP17445238 faldo:position ?templateMotifSequenceMatchBeginPositionP17445233 ;
faldo:reference isoform:P17445-1 .
?templateMotifSequenceProfileAlignmentOperationP17445239 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
?targetMotifMatch240 faldo:location ?targetMotifMatchRegionMatch241 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00804243 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17445MF_00804234 .
?targetMotifMatchRegionMatch241 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00804242 .
?targetMotifMatchRegionMatchBeginMF_00804242 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00804235 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00804243 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17445MF_00804232, 1, (STRLEN(?templateMotifCigarP17445MF_00804232) - STRLEN(REPLACE(?templateMotifCigarP17445MF_00804232, CONCAT('^(?:-*[^-]){', STR(((464 - ?templateMotifSequenceMatchBeginPositionP17445233) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1244) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17445MF_00804234, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804234) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1244), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17445MF_00804234, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804234) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804234, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1244), '}'), '')))), '[^-]', ''))) AS ?step2245) .
BIND(((?step2245 + ?targetMotifMatchRegionMatchBeginPositionMF_00804235) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t246) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch251 faldo:location ?templateMotifSequenceMatchRegionP17445252 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17445254 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17445MF_00804247 .
?templateMotifSequenceMatchRegionP17445252 faldo:begin ?templateMotifSequenceMatchBeginP17445253 .
?templateMotifSequenceMatchBeginP17445253 faldo:position ?templateMotifSequenceMatchBeginPositionP17445248 ;
faldo:reference isoform:P17445-1 .
?templateMotifSequenceProfileAlignmentOperationP17445254 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
?targetMotifMatch255 faldo:location ?targetMotifMatchRegionMatch256 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00804258 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17445MF_00804249 .
?targetMotifMatchRegionMatch256 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00804257 .
?targetMotifMatchRegionMatchBeginMF_00804257 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00804250 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00804258 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17445MF_00804247, 1, (STRLEN(?templateMotifCigarP17445MF_00804247) - STRLEN(REPLACE(?templateMotifCigarP17445MF_00804247, CONCAT('^(?:-*[^-]){', STR(((26 - ?templateMotifSequenceMatchBeginPositionP17445248) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1259) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17445MF_00804249, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804249) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804249, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1259), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17445MF_00804249, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804249) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804249, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1259), '}'), '')))), '[^-]', ''))) AS ?step2260) .
BIND(((?step2260 + ?targetMotifMatchRegionMatchBeginPositionMF_00804250) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t261) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch266 faldo:location ?templateMotifSequenceMatchRegionP17445267 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17445269 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17445MF_00804262 .
?templateMotifSequenceMatchRegionP17445267 faldo:begin ?templateMotifSequenceMatchBeginP17445268 .
?templateMotifSequenceMatchBeginP17445268 faldo:position ?templateMotifSequenceMatchBeginPositionP17445263 ;
faldo:reference isoform:P17445-1 .
?templateMotifSequenceProfileAlignmentOperationP17445269 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
?targetMotifMatch270 faldo:location ?targetMotifMatchRegionMatch271 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00804273 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17445MF_00804264 .
?targetMotifMatchRegionMatch271 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00804272 .
?targetMotifMatchRegionMatchBeginMF_00804272 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00804265 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00804273 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17445MF_00804262, 1, (STRLEN(?templateMotifCigarP17445MF_00804262) - STRLEN(REPLACE(?templateMotifCigarP17445MF_00804262, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionP17445263) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1274) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17445MF_00804264, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804264) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1274), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17445MF_00804264, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804264) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1274), '}'), '')))), '[^-]', ''))) AS ?step2275) .
BIND(((?step2275 + ?targetMotifMatchRegionMatchBeginPositionMF_00804265) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t276) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) .
FILTER (REGEX('[IV]', SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch281 faldo:location ?templateMotifSequenceMatchRegionP17445282 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17445284 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17445MF_00804277 .
?templateMotifSequenceMatchRegionP17445282 faldo:begin ?templateMotifSequenceMatchBeginP17445283 .
?templateMotifSequenceMatchBeginP17445283 faldo:position ?templateMotifSequenceMatchBeginPositionP17445278 ;
faldo:reference isoform:P17445-1 .
?templateMotifSequenceProfileAlignmentOperationP17445284 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
?targetMotifMatch285 faldo:location ?targetMotifMatchRegionMatch286 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00804288 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17445MF_00804279 .
?targetMotifMatchRegionMatch286 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00804287 .
?targetMotifMatchRegionMatchBeginMF_00804287 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00804280 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00804288 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17445MF_00804277, 1, (STRLEN(?templateMotifCigarP17445MF_00804277) - STRLEN(REPLACE(?templateMotifCigarP17445MF_00804277, CONCAT('^(?:-*[^-]){', STR(((93 - ?templateMotifSequenceMatchBeginPositionP17445278) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1289) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17445MF_00804279, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804279) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804279, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1289), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17445MF_00804279, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804279) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804279, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1289), '}'), '')))), '[^-]', ''))) AS ?step2290) .
BIND(((?step2290 + ?targetMotifMatchRegionMatchBeginPositionMF_00804280) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs1t291) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) .
FILTER (REGEX('[DN]', SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch296 faldo:location ?templateMotifSequenceMatchRegionP17445297 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17445299 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17445MF_00804292 .
?templateMotifSequenceMatchRegionP17445297 faldo:begin ?templateMotifSequenceMatchBeginP17445298 .
?templateMotifSequenceMatchBeginP17445298 faldo:position ?templateMotifSequenceMatchBeginPositionP17445293 ;
faldo:reference isoform:P17445-1 .
?templateMotifSequenceProfileAlignmentOperationP17445299 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
?targetMotifMatch300 faldo:location ?targetMotifMatchRegionMatch301 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00804303 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17445MF_00804294 .
?targetMotifMatchRegionMatch301 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00804302 .
?targetMotifMatchRegionMatchBeginMF_00804302 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00804295 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00804303 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17445MF_00804292, 1, (STRLEN(?templateMotifCigarP17445MF_00804292) - STRLEN(REPLACE(?templateMotifCigarP17445MF_00804292, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionP17445293) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1304) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17445MF_00804294, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804294) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1304), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17445MF_00804294, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804294) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1304), '}'), '')))), '[^-]', ''))) AS ?step2305) .
BIND(((?step2305 + ?targetMotifMatchRegionMatchBeginPositionMF_00804295) - 1) AS ?thisPositionOn80) .
BIND(?thisPositionOn80 AS ?thisPositionOn81) .
BIND(?this AS ?pfs1t306) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse78) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1) = 'I')) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch311 faldo:location ?templateMotifSequenceMatchRegionP17445312 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17445314 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17445MF_00804307 .
?templateMotifSequenceMatchRegionP17445312 faldo:begin ?templateMotifSequenceMatchBeginP17445313 .
?templateMotifSequenceMatchBeginP17445313 faldo:position ?templateMotifSequenceMatchBeginPositionP17445308 ;
faldo:reference isoform:P17445-1 .
?templateMotifSequenceProfileAlignmentOperationP17445314 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
?targetMotifMatch315 faldo:location ?targetMotifMatchRegionMatch316 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00804318 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17445MF_00804309 .
?targetMotifMatchRegionMatch316 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00804317 .
?targetMotifMatchRegionMatchBeginMF_00804317 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00804310 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00804318 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17445MF_00804307, 1, (STRLEN(?templateMotifCigarP17445MF_00804307) - STRLEN(REPLACE(?templateMotifCigarP17445MF_00804307, CONCAT('^(?:-*[^-]){', STR(((246 - ?templateMotifSequenceMatchBeginPositionP17445308) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1319) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17445MF_00804309, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804309) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804309, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1319), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17445MF_00804309, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804309) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804309, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1319), '}'), '')))), '[^-]', ''))) AS ?step2320) .
BIND(((?step2320 + ?targetMotifMatchRegionMatchBeginPositionMF_00804310) - 1) AS ?thisPositionOn87) .
BIND(?thisPositionOn87 AS ?thisPositionOn88) .
BIND(?this AS ?pfs1t321) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse85) .
FILTER (REGEX('[LVI]', SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch326 faldo:location ?templateMotifSequenceMatchRegionP17445327 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17445329 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17445MF_00804322 .
?templateMotifSequenceMatchRegionP17445327 faldo:begin ?templateMotifSequenceMatchBeginP17445328 .
?templateMotifSequenceMatchBeginP17445328 faldo:position ?templateMotifSequenceMatchBeginPositionP17445323 ;
faldo:reference isoform:P17445-1 .
?templateMotifSequenceProfileAlignmentOperationP17445329 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
?targetMotifMatch330 faldo:location ?targetMotifMatchRegionMatch331 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00804333 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17445MF_00804324 .
?targetMotifMatchRegionMatch331 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00804332 .
?targetMotifMatchRegionMatchBeginMF_00804332 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00804325 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00804333 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17445MF_00804322, 1, (STRLEN(?templateMotifCigarP17445MF_00804322) - STRLEN(REPLACE(?templateMotifCigarP17445MF_00804322, CONCAT('^(?:-*[^-]){', STR(((457 - ?templateMotifSequenceMatchBeginPositionP17445323) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1334) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17445MF_00804324, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804324) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804324, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1334), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17445MF_00804324, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804324) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804324, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1334), '}'), '')))), '[^-]', ''))) AS ?step2335) .
BIND(((?step2335 + ?targetMotifMatchRegionMatchBeginPositionMF_00804325) - 1) AS ?thisPositionOn94) .
BIND(?thisPositionOn94 AS ?thisPositionOn95) .
BIND(?this AS ?pfs1t336) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse92) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn94, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a90')) AS ?annotation90) .
BIND(?this AS ?pfs89) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch341 faldo:location ?templateMotifSequenceMatchRegionP17445342 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17445344 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17445MF_00804337 .
?templateMotifSequenceMatchRegionP17445342 faldo:begin ?templateMotifSequenceMatchBeginP17445343 .
?templateMotifSequenceMatchBeginP17445343 faldo:position ?templateMotifSequenceMatchBeginPositionP17445338 ;
faldo:reference isoform:P17445-1 .
?templateMotifSequenceProfileAlignmentOperationP17445344 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
?targetMotifMatch345 faldo:location ?targetMotifMatchRegionMatch346 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00804348 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17445MF_00804339 .
?targetMotifMatchRegionMatch346 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00804347 .
?targetMotifMatchRegionMatchBeginMF_00804347 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00804340 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00804348 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17445MF_00804337, 1, (STRLEN(?templateMotifCigarP17445MF_00804337) - STRLEN(REPLACE(?templateMotifCigarP17445MF_00804337, CONCAT('^(?:-*[^-]){', STR(((460 - ?templateMotifSequenceMatchBeginPositionP17445338) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1349) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17445MF_00804339, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804339) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804339, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1349), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17445MF_00804339, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804339) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804339, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1349), '}'), '')))), '[^-]', ''))) AS ?step2350) .
BIND(((?step2350 + ?targetMotifMatchRegionMatchBeginPositionMF_00804340) - 1) AS ?thisPositionOn101) .
BIND(?thisPositionOn101 AS ?thisPositionOn102) .
BIND(?this AS ?pfs1t351) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfsb98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfse99) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn101, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a97')) AS ?annotation97) .
BIND(?this AS ?pfs96) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch356 faldo:location ?templateMotifSequenceMatchRegionP17445357 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17445359 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17445MF_00804352 .
?templateMotifSequenceMatchRegionP17445357 faldo:begin ?templateMotifSequenceMatchBeginP17445358 .
?templateMotifSequenceMatchBeginP17445358 faldo:position ?templateMotifSequenceMatchBeginPositionP17445353 ;
faldo:reference isoform:P17445-1 .
?templateMotifSequenceProfileAlignmentOperationP17445359 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
?targetMotifMatch360 faldo:location ?targetMotifMatchRegionMatch361 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00804363 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17445MF_00804354 .
?targetMotifMatchRegionMatch361 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00804362 .
?targetMotifMatchRegionMatchBeginMF_00804362 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00804355 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00804363 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17445MF_00804352, 1, (STRLEN(?templateMotifCigarP17445MF_00804352) - STRLEN(REPLACE(?templateMotifCigarP17445MF_00804352, CONCAT('^(?:-*[^-]){', STR(((254 - ?templateMotifSequenceMatchBeginPositionP17445353) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1364) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17445MF_00804354, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804354) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804354, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1364), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17445MF_00804354, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804354) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804354, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1364), '}'), '')))), '[^-]', ''))) AS ?step2365) .
BIND(((?step2365 + ?targetMotifMatchRegionMatchBeginPositionMF_00804355) - 1) AS ?thisPositionOn108) .
BIND(?thisPositionOn108 AS ?thisPositionOn109) .
BIND(?this AS ?pfs1t366) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfsb105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfse106) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn108, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a104')) AS ?annotation104) .
BIND(?this AS ?pfs103) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch371 faldo:location ?templateMotifSequenceMatchRegionP17445372 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17445374 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17445MF_00804367 .
?templateMotifSequenceMatchRegionP17445372 faldo:begin ?templateMotifSequenceMatchBeginP17445373 .
?templateMotifSequenceMatchBeginP17445373 faldo:position ?templateMotifSequenceMatchBeginPositionP17445368 ;
faldo:reference isoform:P17445-1 .
?templateMotifSequenceProfileAlignmentOperationP17445374 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
?targetMotifMatch375 faldo:location ?targetMotifMatchRegionMatch376 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00804378 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17445MF_00804369 .
?targetMotifMatchRegionMatch376 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00804377 .
?targetMotifMatchRegionMatchBeginMF_00804377 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00804370 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00804378 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17445MF_00804367, 1, (STRLEN(?templateMotifCigarP17445MF_00804367) - STRLEN(REPLACE(?templateMotifCigarP17445MF_00804367, CONCAT('^(?:-*[^-]){', STR(((286 - ?templateMotifSequenceMatchBeginPositionP17445368) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1379) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17445MF_00804369, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804369) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804369, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1379), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17445MF_00804369, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804369) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804369, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1379), '}'), '')))), '[^-]', ''))) AS ?step2380) .
BIND(((?step2380 + ?targetMotifMatchRegionMatchBeginPositionMF_00804370) - 1) AS ?thisPositionOn115) .
BIND(?thisPositionOn115 AS ?thisPositionOn116) .
BIND(?this AS ?pfs1t381) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfsb112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfse113) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn115, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a111')) AS ?annotation111) .
BIND(?this AS ?pfs110) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch386 faldo:location ?templateMotifSequenceMatchRegionP17445387 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17445389 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17445MF_00804382 .
?templateMotifSequenceMatchRegionP17445387 faldo:begin ?templateMotifSequenceMatchBeginP17445388 .
?templateMotifSequenceMatchBeginP17445388 faldo:position ?templateMotifSequenceMatchBeginPositionP17445383 ;
faldo:reference isoform:P17445-1 .
?templateMotifSequenceProfileAlignmentOperationP17445389 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
?targetMotifMatch390 faldo:location ?targetMotifMatchRegionMatch391 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00804393 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17445MF_00804384 .
?targetMotifMatchRegionMatch391 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00804392 .
?targetMotifMatchRegionMatchBeginMF_00804392 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00804385 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00804393 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17445MF_00804382, 1, (STRLEN(?templateMotifCigarP17445MF_00804382) - STRLEN(REPLACE(?templateMotifCigarP17445MF_00804382, CONCAT('^(?:-*[^-]){', STR(((387 - ?templateMotifSequenceMatchBeginPositionP17445383) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1394) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17445MF_00804384, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804384) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1394), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17445MF_00804384, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804384) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1394), '}'), '')))), '[^-]', ''))) AS ?step2395) .
BIND(((?step2395 + ?targetMotifMatchRegionMatchBeginPositionMF_00804385) - 1) AS ?thisPositionOn122) .
BIND(?thisPositionOn122 AS ?thisPositionOn123) .
BIND(?this AS ?pfs1t396) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn122))) AS ?pfsb119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn123))) AS ?pfse120) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn122, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a118')) AS ?annotation118) .
BIND(?this AS ?pfs117) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch401 faldo:location ?templateMotifSequenceMatchRegionP17445402 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17445404 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17445MF_00804397 .
?templateMotifSequenceMatchRegionP17445402 faldo:begin ?templateMotifSequenceMatchBeginP17445403 .
?templateMotifSequenceMatchBeginP17445403 faldo:position ?templateMotifSequenceMatchBeginPositionP17445398 ;
faldo:reference isoform:P17445-1 .
?templateMotifSequenceProfileAlignmentOperationP17445404 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
?targetMotifMatch405 faldo:location ?targetMotifMatchRegionMatch406 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00804408 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17445MF_00804399 .
?targetMotifMatchRegionMatch406 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00804407 .
?targetMotifMatchRegionMatchBeginMF_00804407 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00804400 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00804408 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17445MF_00804397, 1, (STRLEN(?templateMotifCigarP17445MF_00804397) - STRLEN(REPLACE(?templateMotifCigarP17445MF_00804397, CONCAT('^(?:-*[^-]){', STR(((248 - ?templateMotifSequenceMatchBeginPositionP17445398) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1409) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17445MF_00804399, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804399) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804399, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1409), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17445MF_00804399, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804399) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804399, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1409), '}'), '')))), '[^-]', ''))) AS ?step2410) .
BIND(((?step2410 + ?targetMotifMatchRegionMatchBeginPositionMF_00804400) - 1) AS ?thisPositionOn128) .
BIND(?thisPositionOn128 AS ?thisPositionOn129) .
BIND(?this AS ?pfs1t411) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfsb126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn129))) AS ?pfse127) .
FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn128, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a125')) AS ?annotation125) .
BIND(?this AS ?pfs124) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch416 faldo:location ?templateMotifSequenceMatchRegionP17445417 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP17445419 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP17445MF_00804412 .
?templateMotifSequenceMatchRegionP17445417 faldo:begin ?templateMotifSequenceMatchBeginP17445418 .
?templateMotifSequenceMatchBeginP17445418 faldo:position ?templateMotifSequenceMatchBeginPositionP17445413 ;
faldo:reference isoform:P17445-1 .
?templateMotifSequenceProfileAlignmentOperationP17445419 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
?targetMotifMatch420 faldo:location ?targetMotifMatchRegionMatch421 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00804423 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP17445MF_00804414 .
?targetMotifMatchRegionMatch421 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00804422 .
?targetMotifMatchRegionMatchBeginMF_00804422 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00804415 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00804423 edam:has_input signature:MF_00804 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP17445MF_00804412, 1, (STRLEN(?templateMotifCigarP17445MF_00804412) - STRLEN(REPLACE(?templateMotifCigarP17445MF_00804412, CONCAT('^(?:-*[^-]){', STR(((286 - ?templateMotifSequenceMatchBeginPositionP17445413) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1424) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP17445MF_00804414, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804414) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804414, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1424), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP17445MF_00804414, 1, (STRLEN(?targetMotifMatchCigarP17445MF_00804414) - STRLEN(REPLACE(?targetMotifMatchCigarP17445MF_00804414, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1424), '}'), '')))), '[^-]', ''))) AS ?step2425) .
BIND(((?step2425 + ?targetMotifMatchRegionMatchBeginPositionMF_00804415) - 1) AS ?thisPositionOn134) .
BIND(?thisPositionOn134 AS ?thisPositionOn135) .
BIND(?this AS ?pfs1t426) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn134))) AS ?pfsb132) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn135))) AS ?pfse133) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn134, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00804a131')) AS ?annotation131) .
BIND(?this AS ?pfs130) .
}
}
"xsd:string |
