| http://purl.uniprot.org/unirules/MF_00850#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:303394 up:source unirule:MF_00850 .
_:303395 up:source unirule:MF_00850 .
_:303396 up:source unirule:MF_00850 .
_:303397 up:source unirule:MF_00850 .
_:303398 up:source unirule:MF_00850 .
_:303399 up:source unirule:MF_00850 .
_:303400 up:source unirule:MF_00850 .
_:303401 up:source unirule:MF_00850 .
_:303402 up:source unirule:MF_00850 .
_:303403 up:source unirule:MF_00850 .
_:303404 up:source unirule:MF_00850 .
_:303405 up:source unirule:MF_00850 .
_:303406 up:source unirule:MF_00850 .
_:303407 up:source unirule:MF_00850 .
_:303408 up:source unirule:MF_00850 .
_:303409 up:source unirule:MF_00850 .
_:303410 up:source unirule:MF_00850 .
_:303411 up:source unirule:MF_00850 .
_:303412 up:source unirule:MF_00850 .
_:303413 up:source unirule:MF_00850 .
_:303414 up:source unirule:MF_00850 .
_:303415 up:source unirule:MF_00850 .
_:303416 up:source unirule:MF_00850 .
_:303417 up:source unirule:MF_00850 .
_:303418 up:source unirule:MF_00850 .
_:303419 up:source unirule:MF_00850 .
_:303420 up:source unirule:MF_00850 .
_:303421 up:source unirule:MF_00850 .
_:303422 up:source unirule:MF_00850 .
_:303423 up:source unirule:MF_00850 .
_:303424 up:source unirule:MF_00850 .
_:303425 up:source unirule:MF_00850 .
_:303426 up:source unirule:MF_00850 .
_:303427 up:source unirule:MF_00850 .
_:303428 up:source unirule:MF_00850 .
_:303429 up:source unirule:MF_00850 .
_:303430 up:source unirule:MF_00850 .
_:303431 up:source unirule:MF_00850 .
_:303432 up:source unirule:MF_00850 .
_:303433 up:source unirule:MF_00850 .
_:303434 up:source unirule:MF_00850 .
_:303435 up:source unirule:MF_00850 .
_:303436 up:source unirule:MF_00850 .
_:303437 up:source unirule:MF_00850 .
_:303438 up:source unirule:MF_00850 .
_:303439 up:source unirule:MF_00850 .
_:303440 up:source unirule:MF_00850 .
_:303441 up:source unirule:MF_00850 .
_:303442 up:source unirule:MF_00850 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation11 ,
?annotation12 ,
?annotation13 ;
up:classifiedWith GO:0000287 ,
GO:0005886 ,
GO:0008289 ,
GO:0030976 ,
GO:0042867 ,
GO:0048039 ,
GO:0050660 ,
GO:0052737 ,
keyword:1003 ,
keyword:274 ,
keyword:285 ,
keyword:446 ,
keyword:460 ,
keyword:472 ,
keyword:479 ,
keyword:547 ,
keyword:560 ,
keyword:670 ,
keyword:786 ,
keyword:830 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.2.5.1' ;
up:fullName 'Pyruvate dehydrogenase [ubiquinone]' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Pyruvate oxidase' ;
up:shortName 'POX' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Pyruvate:ubiquinone-8 oxidoreductase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'poxB' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'A peripheral cell membrane enzyme that catalyzes the oxidative decarboxylation of pyruvate to form acetate and CO(2). It channels electrons from the cytoplasm to the respiratory chain at the cell membrane via ubiquinone.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:57692 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 FAD per subunit.' .
?annotation8 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 Mg(2+) ion per subunit.' .
?annotation9 up:cofactor chebi:58937 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 thiamine pyrophosphate per subunit.' .
?annotation10 a up:Activity_Regulation_Annotation ;
rdfs:comment 'The C-terminus inhibits activity; it has to move for the enzyme to be active. Activated by lipid-binding, which occurs via the C-terminus.' .
?annotation11 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation12 a up:Domain_Annotation ;
rdfs:comment 'Has 4 domains; the Pyr domain which binds the pyrimidine moiety of the thiamine pyrophosphate cofactor, the FAD-binding domain, the PP-binding domain which binds the pyrophosphate portion of thiamine pyrophosphate and the C-terminal membrane binding region. The C-terminus is held closely against the rest of the protein and covers the active site; during activation it unfolds from the rest of the protein and forms an amphipathic helix upon membrane binding, exposing the active site.' .
?annotation13 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the TPP enzyme family.' .
?case14 up:classifiedWith keyword:997 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Pyr domain' .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'FAD-binding domain' .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'PP-binding domain' .
?pfsb30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf chebi:58937 .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Membrane-binding domain' .
?pfsb43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:57692 .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:57692 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf chebi:58937 .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf chebi:58937 .
?pfs75 up:annotation ?annotation76 .
?annotation76 faldo:begin ?pfsb77 ;
faldo:end ?pfse78 ;
up:ligand ?ligand79 ;
rdf:type up:Binding_Site_Annotation .
?pfsb77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?ligand79 rdfs:subClassOf chebi:18420 .
?pfs82 up:annotation ?annotation83 .
?annotation83 faldo:begin ?pfsb84 ;
faldo:end ?pfse85 ;
up:ligand ?ligand86 ;
rdf:type up:Binding_Site_Annotation .
?pfsb84 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfse85 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?ligand86 rdfs:subClassOf chebi:18420 .
?pfs89 up:annotation ?annotation90 .
?annotation90 faldo:begin ?pfsb91 ;
faldo:end ?pfse92 ;
up:ligand ?ligand93 ;
rdf:type up:Binding_Site_Annotation .
?pfsb91 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?pfse92 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?ligand93 rdfs:subClassOf chebi:58937 .
?pfs96 up:annotation ?annotation97 .
?annotation97 faldo:begin ?pfsb98 ;
faldo:end ?pfse99 ;
up:ligand ?ligand100 ;
rdf:type up:Binding_Site_Annotation .
?pfsb98 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?pfse99 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?ligand100 rdfs:subClassOf chebi:57692 .
?pfs103 up:annotation ?annotation104 .
?annotation104 faldo:begin ?pfsb105 ;
faldo:end ?pfse106 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Moves into active site upon enzyme activation, plays a role in electron transfer' .
?pfsb105 faldo:position ?thisPositionOn107 ;
rdf:type faldo:ExactPosition .
?pfse106 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?sam109 up:classifiedWith keyword:175 .
?coiledCoil110 faldo:begin ?coiledCoilb111 ;
faldo:end ?coiledCoile112 .
?coiledCoilb111 faldo:position ?coiledCoilbp113 .
?coiledCoile112 faldo:position ?coiledCoilep114 .
?keyword115 up:range ?coiledCoil110 .
_:303443 a rdf:Statement ;
up:attribution _:303394 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:303444 a rdf:Statement ;
up:attribution _:303395 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:303445 a rdf:Statement ;
up:attribution _:303396 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:303446 a rdf:Statement ;
up:attribution _:303397 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:303447 a rdf:Statement ;
up:attribution _:303398 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:303448 a rdf:Statement ;
up:attribution _:303399 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:303449 a rdf:Statement ;
up:attribution _:303400 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:303450 a rdf:Statement ;
up:attribution _:303401 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:303451 a rdf:Statement ;
up:attribution _:303402 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:303452 a rdf:Statement ;
up:attribution _:303403 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:303453 a rdf:Statement ;
up:attribution _:303404 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:303454 a rdf:Statement ;
up:attribution _:303405 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:303455 a rdf:Statement ;
up:attribution _:303406 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:303456 a rdf:Statement ;
up:attribution _:303407 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:303457 a rdf:Statement ;
up:attribution _:303408 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:274 .
_:303458 a rdf:Statement ;
up:attribution _:303409 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:303459 a rdf:Statement ;
up:attribution _:303410 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:446 .
_:303460 a rdf:Statement ;
up:attribution _:303411 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:303461 a rdf:Statement ;
up:attribution _:303412 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:303462 a rdf:Statement ;
up:attribution _:303413 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:303463 a rdf:Statement ;
up:attribution _:303414 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:303464 a rdf:Statement ;
up:attribution _:303415 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:303465 a rdf:Statement ;
up:attribution _:303416 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:670 .
_:303466 a rdf:Statement ;
up:attribution _:303417 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:786 .
_:303467 a rdf:Statement ;
up:attribution _:303418 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:830 .
_:303468 a rdf:Statement ;
up:attribution _:303419 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:303469 a rdf:Statement ;
up:attribution _:303420 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050660 .
_:303470 a rdf:Statement ;
up:attribution _:303421 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008289 .
_:303471 a rdf:Statement ;
up:attribution _:303422 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:303472 a rdf:Statement ;
up:attribution _:303423 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0052737 .
_:303473 a rdf:Statement ;
up:attribution _:303424 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030976 .
_:303474 a rdf:Statement ;
up:attribution _:303425 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042867 .
_:303475 a rdf:Statement ;
up:attribution _:303426 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0048039 .
_:303476 a rdf:Statement ;
up:attribution _:303427 ;
rdf:subject ?case14 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:303477 a rdf:Statement ;
up:source unirule:MF_00850 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:303478 a rdf:Statement ;
up:attribution _:303428 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:303479 a rdf:Statement ;
up:source unirule:MF_00850 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:303480 a rdf:Statement ;
up:attribution _:303429 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:303481 a rdf:Statement ;
up:source unirule:MF_00850 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:303482 a rdf:Statement ;
up:attribution _:303430 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:303483 a rdf:Statement ;
up:source unirule:MF_00850 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:303484 a rdf:Statement ;
up:attribution _:303431 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:303485 a rdf:Statement ;
up:source unirule:MF_00850 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:303486 a rdf:Statement ;
up:attribution _:303432 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:303487 a rdf:Statement ;
up:source unirule:MF_00850 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:303488 a rdf:Statement ;
up:attribution _:303433 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:303489 a rdf:Statement ;
up:source unirule:MF_00850 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:303490 a rdf:Statement ;
up:attribution _:303434 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:303491 a rdf:Statement ;
up:source unirule:MF_00850 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:303492 a rdf:Statement ;
up:attribution _:303435 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:303493 a rdf:Statement ;
up:source unirule:MF_00850 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:303494 a rdf:Statement ;
up:attribution _:303436 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:303495 a rdf:Statement ;
up:source unirule:MF_00850 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:303496 a rdf:Statement ;
up:attribution _:303437 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:303497 a rdf:Statement ;
up:source unirule:MF_00850 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:303498 a rdf:Statement ;
up:attribution _:303438 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:303499 a rdf:Statement ;
up:source unirule:MF_00850 ;
rdf:subject ?pfs89 ;
rdf:predicate up:annotation ;
rdf:object ?annotation90 .
_:303500 a rdf:Statement ;
up:attribution _:303439 ;
rdf:subject ?pfs89 ;
rdf:predicate up:annotation ;
rdf:object ?annotation90 .
_:303501 a rdf:Statement ;
up:source unirule:MF_00850 ;
rdf:subject ?pfs96 ;
rdf:predicate up:annotation ;
rdf:object ?annotation97 .
_:303502 a rdf:Statement ;
up:attribution _:303440 ;
rdf:subject ?pfs96 ;
rdf:predicate up:annotation ;
rdf:object ?annotation97 .
_:303503 a rdf:Statement ;
up:source unirule:MF_00850 ;
rdf:subject ?pfs103 ;
rdf:predicate up:annotation ;
rdf:object ?annotation104 .
_:303504 a rdf:Statement ;
up:attribution _:303441 ;
rdf:subject ?pfs103 ;
rdf:predicate up:annotation ;
rdf:object ?annotation104 .
_:303505 a rdf:Statement ;
up:attribution _:303442 ;
rdf:subject ?sam109 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:175 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00850
#Rule MF_00850 Created by:? on:2020-03-23 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00850 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00850a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a13')) AS ?annotation13) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch120 faldo:location ?templateMotifSequenceMatchRegionP07003121 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07003123 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07003MF_00850116 .
?templateMotifSequenceMatchRegionP07003121 faldo:begin ?templateMotifSequenceMatchBeginP07003122 .
?templateMotifSequenceMatchBeginP07003122 faldo:position ?templateMotifSequenceMatchBeginPositionP07003117 ;
faldo:reference isoform:P07003-1 .
?templateMotifSequenceProfileAlignmentOperationP07003123 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
?targetMotifMatch124 faldo:location ?targetMotifMatchRegionMatch125 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00850127 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07003MF_00850118 .
?targetMotifMatchRegionMatch125 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00850126 .
?targetMotifMatchRegionMatchBeginMF_00850126 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00850119 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00850127 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07003MF_00850116, 1, (STRLEN(?templateMotifCigarP07003MF_00850116) - STRLEN(REPLACE(?templateMotifCigarP07003MF_00850116, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP07003117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07003MF_00850118, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850118) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07003MF_00850118, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850118) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) .
BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_00850119) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07003MF_00850116, 1, (STRLEN(?templateMotifCigarP07003MF_00850116) - STRLEN(REPLACE(?templateMotifCigarP07003MF_00850116, CONCAT('^(?:-*[^-]){', STR(((182 - ?templateMotifSequenceMatchBeginPositionP07003117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07003MF_00850118, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850118) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07003MF_00850118, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850118) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) .
BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_00850119) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t132) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER ((BOUND(?thisPositionOn20) && BOUND(?thisPositionOn21))) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch137 faldo:location ?templateMotifSequenceMatchRegionP07003138 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07003140 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07003MF_00850133 .
?templateMotifSequenceMatchRegionP07003138 faldo:begin ?templateMotifSequenceMatchBeginP07003139 .
?templateMotifSequenceMatchBeginP07003139 faldo:position ?templateMotifSequenceMatchBeginPositionP07003134 ;
faldo:reference isoform:P07003-1 .
?templateMotifSequenceProfileAlignmentOperationP07003140 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
?targetMotifMatch141 faldo:location ?targetMotifMatchRegionMatch142 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00850144 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07003MF_00850135 .
?targetMotifMatchRegionMatch142 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00850143 .
?targetMotifMatchRegionMatchBeginMF_00850143 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00850136 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00850144 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07003MF_00850133, 1, (STRLEN(?templateMotifCigarP07003MF_00850133) - STRLEN(REPLACE(?templateMotifCigarP07003MF_00850133, CONCAT('^(?:-*[^-]){', STR(((183 - ?templateMotifSequenceMatchBeginPositionP07003134) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07003MF_00850135, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850135) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07003MF_00850135, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850135) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), '')))), '[^-]', ''))) AS ?step2146) .
BIND(((?step2146 + ?targetMotifMatchRegionMatchBeginPositionMF_00850136) - 1) AS ?thisPositionOn26) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07003MF_00850133, 1, (STRLEN(?templateMotifCigarP07003MF_00850133) - STRLEN(REPLACE(?templateMotifCigarP07003MF_00850133, CONCAT('^(?:-*[^-]){', STR(((334 - ?templateMotifSequenceMatchBeginPositionP07003134) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07003MF_00850135, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850135) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07003MF_00850135, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850135) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) .
BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_00850136) - 1) AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER ((BOUND(?thisPositionOn26) && BOUND(?thisPositionOn27))) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionP07003155 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07003157 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07003MF_00850150 .
?templateMotifSequenceMatchRegionP07003155 faldo:begin ?templateMotifSequenceMatchBeginP07003156 .
?templateMotifSequenceMatchBeginP07003156 faldo:position ?templateMotifSequenceMatchBeginPositionP07003151 ;
faldo:reference isoform:P07003-1 .
?templateMotifSequenceProfileAlignmentOperationP07003157 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00850161 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07003MF_00850152 .
?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00850160 .
?targetMotifMatchRegionMatchBeginMF_00850160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00850153 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00850161 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07003MF_00850150, 1, (STRLEN(?templateMotifCigarP07003MF_00850150) - STRLEN(REPLACE(?templateMotifCigarP07003MF_00850150, CONCAT('^(?:-*[^-]){', STR(((335 - ?templateMotifSequenceMatchBeginPositionP07003151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07003MF_00850152, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850152) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07003MF_00850152, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850152) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) .
BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_00850153) - 1) AS ?thisPositionOn32) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07003MF_00850150, 1, (STRLEN(?templateMotifCigarP07003MF_00850150) - STRLEN(REPLACE(?templateMotifCigarP07003MF_00850150, CONCAT('^(?:-*[^-]){', STR(((530 - ?templateMotifSequenceMatchBeginPositionP07003151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07003MF_00850152, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850152) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07003MF_00850152, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850152) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) .
BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_00850153) - 1) AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t166) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) .
FILTER ((BOUND(?thisPositionOn32) && BOUND(?thisPositionOn33))) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch171 faldo:location ?templateMotifSequenceMatchRegionP07003172 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07003174 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07003MF_00850167 .
?templateMotifSequenceMatchRegionP07003172 faldo:begin ?templateMotifSequenceMatchBeginP07003173 .
?templateMotifSequenceMatchBeginP07003173 faldo:position ?templateMotifSequenceMatchBeginPositionP07003168 ;
faldo:reference isoform:P07003-1 .
?templateMotifSequenceProfileAlignmentOperationP07003174 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
?targetMotifMatch175 faldo:location ?targetMotifMatchRegionMatch176 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00850178 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07003MF_00850169 .
?targetMotifMatchRegionMatch176 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00850177 .
?targetMotifMatchRegionMatchBeginMF_00850177 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00850170 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00850178 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07003MF_00850167, 1, (STRLEN(?templateMotifCigarP07003MF_00850167) - STRLEN(REPLACE(?templateMotifCigarP07003MF_00850167, CONCAT('^(?:-*[^-]){', STR(((460 - ?templateMotifSequenceMatchBeginPositionP07003168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07003MF_00850169, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850169) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07003MF_00850169, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850169) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), '')))), '[^-]', ''))) AS ?step2180) .
BIND(((?step2180 + ?targetMotifMatchRegionMatchBeginPositionMF_00850170) - 1) AS ?thisPositionOn39) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07003MF_00850167, 1, (STRLEN(?templateMotifCigarP07003MF_00850167) - STRLEN(REPLACE(?templateMotifCigarP07003MF_00850167, CONCAT('^(?:-*[^-]){', STR(((466 - ?templateMotifSequenceMatchBeginPositionP07003168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07003MF_00850169, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850169) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07003MF_00850169, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850169) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) .
BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_00850170) - 1) AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t183) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) .
FILTER ((BOUND(?thisPositionOn39) && BOUND(?thisPositionOn40))) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch188 faldo:location ?templateMotifSequenceMatchRegionP07003189 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07003191 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07003MF_00850184 .
?templateMotifSequenceMatchRegionP07003189 faldo:begin ?templateMotifSequenceMatchBeginP07003190 .
?templateMotifSequenceMatchBeginP07003190 faldo:position ?templateMotifSequenceMatchBeginPositionP07003185 ;
faldo:reference isoform:P07003-1 .
?templateMotifSequenceProfileAlignmentOperationP07003191 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
?targetMotifMatch192 faldo:location ?targetMotifMatchRegionMatch193 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00850195 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07003MF_00850186 .
?targetMotifMatchRegionMatch193 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00850194 .
?targetMotifMatchRegionMatchBeginMF_00850194 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00850187 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00850195 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07003MF_00850184, 1, (STRLEN(?templateMotifCigarP07003MF_00850184) - STRLEN(REPLACE(?templateMotifCigarP07003MF_00850184, CONCAT('^(?:-*[^-]){', STR(((531 - ?templateMotifSequenceMatchBeginPositionP07003185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07003MF_00850186, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850186) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07003MF_00850186, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850186) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), '')))), '[^-]', ''))) AS ?step2197) .
BIND(((?step2197 + ?targetMotifMatchRegionMatchBeginPositionMF_00850187) - 1) AS ?thisPositionOn45) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07003MF_00850184, 1, (STRLEN(?templateMotifCigarP07003MF_00850184) - STRLEN(REPLACE(?templateMotifCigarP07003MF_00850184, CONCAT('^(?:-*[^-]){', STR(((572 - ?templateMotifSequenceMatchBeginPositionP07003185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07003MF_00850186, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850186) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07003MF_00850186, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850186) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), '')))), '[^-]', ''))) AS ?step2199) .
BIND(((?step2199 + ?targetMotifMatchRegionMatchBeginPositionMF_00850187) - 1) AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t200) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse44) .
FILTER ((BOUND(?thisPositionOn45) && BOUND(?thisPositionOn46))) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch205 faldo:location ?templateMotifSequenceMatchRegionP07003206 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07003208 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07003MF_00850201 .
?templateMotifSequenceMatchRegionP07003206 faldo:begin ?templateMotifSequenceMatchBeginP07003207 .
?templateMotifSequenceMatchBeginP07003207 faldo:position ?templateMotifSequenceMatchBeginPositionP07003202 ;
faldo:reference isoform:P07003-1 .
?templateMotifSequenceProfileAlignmentOperationP07003208 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
?targetMotifMatch209 faldo:location ?targetMotifMatchRegionMatch210 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00850212 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07003MF_00850203 .
?targetMotifMatchRegionMatch210 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00850211 .
?targetMotifMatchRegionMatchBeginMF_00850211 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00850204 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00850212 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07003MF_00850201, 1, (STRLEN(?templateMotifCigarP07003MF_00850201) - STRLEN(REPLACE(?templateMotifCigarP07003MF_00850201, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionP07003202) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1213) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07003MF_00850203, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850203) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07003MF_00850203, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850203) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), '')))), '[^-]', ''))) AS ?step2214) .
BIND(((?step2214 + ?targetMotifMatchRegionMatchBeginPositionMF_00850204) - 1) AS ?thisPositionOn52) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07003MF_00850201, 1, (STRLEN(?templateMotifCigarP07003MF_00850201) - STRLEN(REPLACE(?templateMotifCigarP07003MF_00850201, CONCAT('^(?:-*[^-]){', STR(((254 - ?templateMotifSequenceMatchBeginPositionP07003202) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1215) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07003MF_00850203, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850203) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07003MF_00850203, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850203) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), '')))), '[^-]', ''))) AS ?step2216) .
BIND(((?step2216 + ?targetMotifMatchRegionMatchBeginPositionMF_00850204) - 1) AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t217) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER (REGEX('TGL[IL]', SUBSTR(?thisSequenceValue, ?thisPositionOn52, (?thisPositionOn53 - ?thisPositionOn52)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch222 faldo:location ?templateMotifSequenceMatchRegionP07003223 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07003225 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07003MF_00850218 .
?templateMotifSequenceMatchRegionP07003223 faldo:begin ?templateMotifSequenceMatchBeginP07003224 .
?templateMotifSequenceMatchBeginP07003224 faldo:position ?templateMotifSequenceMatchBeginPositionP07003219 ;
faldo:reference isoform:P07003-1 .
?templateMotifSequenceProfileAlignmentOperationP07003225 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
?targetMotifMatch226 faldo:location ?targetMotifMatchRegionMatch227 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00850229 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07003MF_00850220 .
?targetMotifMatchRegionMatch227 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00850228 .
?targetMotifMatchRegionMatchBeginMF_00850228 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00850221 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00850229 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07003MF_00850218, 1, (STRLEN(?templateMotifCigarP07003MF_00850218) - STRLEN(REPLACE(?templateMotifCigarP07003MF_00850218, CONCAT('^(?:-*[^-]){', STR(((274 - ?templateMotifSequenceMatchBeginPositionP07003219) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1230) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07003MF_00850220, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850220) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07003MF_00850220, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850220) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), '')))), '[^-]', ''))) AS ?step2231) .
BIND(((?step2231 + ?targetMotifMatchRegionMatchBeginPositionMF_00850221) - 1) AS ?thisPositionOn59) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07003MF_00850218, 1, (STRLEN(?templateMotifCigarP07003MF_00850218) - STRLEN(REPLACE(?templateMotifCigarP07003MF_00850218, CONCAT('^(?:-*[^-]){', STR(((278 - ?templateMotifSequenceMatchBeginPositionP07003219) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07003MF_00850220, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850220) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07003MF_00850220, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850220) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) .
BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_00850221) - 1) AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t234) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER (REGEX('[TS][ARNDCQEGHILKMFPSTWYVBZJUOX][FL]P[YF]', SUBSTR(?thisSequenceValue, ?thisPositionOn59, (?thisPositionOn60 - ?thisPositionOn59)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch239 faldo:location ?templateMotifSequenceMatchRegionP07003240 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07003242 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07003MF_00850235 .
?templateMotifSequenceMatchRegionP07003240 faldo:begin ?templateMotifSequenceMatchBeginP07003241 .
?templateMotifSequenceMatchBeginP07003241 faldo:position ?templateMotifSequenceMatchBeginPositionP07003236 ;
faldo:reference isoform:P07003-1 .
?templateMotifSequenceProfileAlignmentOperationP07003242 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
?targetMotifMatch243 faldo:location ?targetMotifMatchRegionMatch244 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00850246 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07003MF_00850237 .
?targetMotifMatchRegionMatch244 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00850245 .
?targetMotifMatchRegionMatchBeginMF_00850245 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00850238 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00850246 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07003MF_00850235, 1, (STRLEN(?templateMotifCigarP07003MF_00850235) - STRLEN(REPLACE(?templateMotifCigarP07003MF_00850235, CONCAT('^(?:-*[^-]){', STR(((406 - ?templateMotifSequenceMatchBeginPositionP07003236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1247) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07003MF_00850237, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850237) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07003MF_00850237, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850237) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), '')))), '[^-]', ''))) AS ?step2248) .
BIND(((?step2248 + ?targetMotifMatchRegionMatchBeginPositionMF_00850238) - 1) AS ?thisPositionOn66) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07003MF_00850235, 1, (STRLEN(?templateMotifCigarP07003MF_00850235) - STRLEN(REPLACE(?templateMotifCigarP07003MF_00850235, CONCAT('^(?:-*[^-]){', STR(((408 - ?templateMotifSequenceMatchBeginPositionP07003236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1249) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07003MF_00850237, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850237) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07003MF_00850237, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850237) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), '')))), '[^-]', ''))) AS ?step2250) .
BIND(((?step2250 + ?targetMotifMatchRegionMatchBeginPositionMF_00850238) - 1) AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t251) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) .
FILTER (REGEX('[GA][ST]M', SUBSTR(?thisSequenceValue, ?thisPositionOn66, (?thisPositionOn67 - ?thisPositionOn66)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch256 faldo:location ?templateMotifSequenceMatchRegionP07003257 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07003259 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07003MF_00850252 .
?templateMotifSequenceMatchRegionP07003257 faldo:begin ?templateMotifSequenceMatchBeginP07003258 .
?templateMotifSequenceMatchBeginP07003258 faldo:position ?templateMotifSequenceMatchBeginPositionP07003253 ;
faldo:reference isoform:P07003-1 .
?templateMotifSequenceProfileAlignmentOperationP07003259 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
?targetMotifMatch260 faldo:location ?targetMotifMatchRegionMatch261 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00850263 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07003MF_00850254 .
?targetMotifMatchRegionMatch261 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00850262 .
?targetMotifMatchRegionMatchBeginMF_00850262 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00850255 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00850263 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07003MF_00850252, 1, (STRLEN(?templateMotifCigarP07003MF_00850252) - STRLEN(REPLACE(?templateMotifCigarP07003MF_00850252, CONCAT('^(?:-*[^-]){', STR(((433 - ?templateMotifSequenceMatchBeginPositionP07003253) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1264) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07003MF_00850254, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850254) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07003MF_00850254, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850254) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), '')))), '[^-]', ''))) AS ?step2265) .
BIND(((?step2265 + ?targetMotifMatchRegionMatchBeginPositionMF_00850255) - 1) AS ?thisPositionOn73) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07003MF_00850252, 1, (STRLEN(?templateMotifCigarP07003MF_00850252) - STRLEN(REPLACE(?templateMotifCigarP07003MF_00850252, CONCAT('^(?:-*[^-]){', STR(((435 - ?templateMotifSequenceMatchBeginPositionP07003253) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1266) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07003MF_00850254, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850254) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1266), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07003MF_00850254, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850254) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1266), '}'), '')))), '[^-]', ''))) AS ?step2267) .
BIND(((?step2267 + ?targetMotifMatchRegionMatchBeginPositionMF_00850255) - 1) AS ?thisPositionOn74) .
BIND(?this AS ?pfs1t268) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, (?thisPositionOn74 - ?thisPositionOn73)) = 'DGG')) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch273 faldo:location ?templateMotifSequenceMatchRegionP07003274 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07003276 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07003MF_00850269 .
?templateMotifSequenceMatchRegionP07003274 faldo:begin ?templateMotifSequenceMatchBeginP07003275 .
?templateMotifSequenceMatchBeginP07003275 faldo:position ?templateMotifSequenceMatchBeginPositionP07003270 ;
faldo:reference isoform:P07003-1 .
?templateMotifSequenceProfileAlignmentOperationP07003276 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
?targetMotifMatch277 faldo:location ?targetMotifMatchRegionMatch278 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00850280 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07003MF_00850271 .
?targetMotifMatchRegionMatch278 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00850279 .
?targetMotifMatchRegionMatchBeginMF_00850279 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00850272 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00850280 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07003MF_00850269, 1, (STRLEN(?templateMotifCigarP07003MF_00850269) - STRLEN(REPLACE(?templateMotifCigarP07003MF_00850269, CONCAT('^(?:-*[^-]){', STR(((433 - ?templateMotifSequenceMatchBeginPositionP07003270) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1281) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07003MF_00850271, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850271) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850271, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1281), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07003MF_00850271, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850271) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850271, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1281), '}'), '')))), '[^-]', ''))) AS ?step2282) .
BIND(((?step2282 + ?targetMotifMatchRegionMatchBeginPositionMF_00850272) - 1) AS ?thisPositionOn80) .
BIND(?thisPositionOn80 AS ?thisPositionOn81) .
BIND(?this AS ?pfs1t283) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse78) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch288 faldo:location ?templateMotifSequenceMatchRegionP07003289 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07003291 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07003MF_00850284 .
?templateMotifSequenceMatchRegionP07003289 faldo:begin ?templateMotifSequenceMatchBeginP07003290 .
?templateMotifSequenceMatchBeginP07003290 faldo:position ?templateMotifSequenceMatchBeginPositionP07003285 ;
faldo:reference isoform:P07003-1 .
?templateMotifSequenceProfileAlignmentOperationP07003291 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
?targetMotifMatch292 faldo:location ?targetMotifMatchRegionMatch293 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00850295 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07003MF_00850286 .
?targetMotifMatchRegionMatch293 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00850294 .
?targetMotifMatchRegionMatchBeginMF_00850294 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00850287 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00850295 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07003MF_00850284, 1, (STRLEN(?templateMotifCigarP07003MF_00850284) - STRLEN(REPLACE(?templateMotifCigarP07003MF_00850284, CONCAT('^(?:-*[^-]){', STR(((460 - ?templateMotifSequenceMatchBeginPositionP07003285) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1296) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07003MF_00850286, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850286) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850286, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1296), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07003MF_00850286, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850286) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850286, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1296), '}'), '')))), '[^-]', ''))) AS ?step2297) .
BIND(((?step2297 + ?targetMotifMatchRegionMatchBeginPositionMF_00850287) - 1) AS ?thisPositionOn87) .
BIND(?thisPositionOn87 AS ?thisPositionOn88) .
BIND(?this AS ?pfs1t298) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse85) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch303 faldo:location ?templateMotifSequenceMatchRegionP07003304 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07003306 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07003MF_00850299 .
?templateMotifSequenceMatchRegionP07003304 faldo:begin ?templateMotifSequenceMatchBeginP07003305 .
?templateMotifSequenceMatchBeginP07003305 faldo:position ?templateMotifSequenceMatchBeginPositionP07003300 ;
faldo:reference isoform:P07003-1 .
?templateMotifSequenceProfileAlignmentOperationP07003306 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
?targetMotifMatch307 faldo:location ?targetMotifMatchRegionMatch308 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00850310 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07003MF_00850301 .
?targetMotifMatchRegionMatch308 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00850309 .
?targetMotifMatchRegionMatchBeginMF_00850309 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00850302 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00850310 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07003MF_00850299, 1, (STRLEN(?templateMotifCigarP07003MF_00850299) - STRLEN(REPLACE(?templateMotifCigarP07003MF_00850299, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionP07003300) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1311) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07003MF_00850301, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850301) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850301, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1311), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07003MF_00850301, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850301) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850301, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1311), '}'), '')))), '[^-]', ''))) AS ?step2312) .
BIND(((?step2312 + ?targetMotifMatchRegionMatchBeginPositionMF_00850302) - 1) AS ?thisPositionOn94) .
BIND(?thisPositionOn94 AS ?thisPositionOn95) .
BIND(?this AS ?pfs1t313) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse92) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn94, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a90')) AS ?annotation90) .
BIND(?this AS ?pfs89) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch318 faldo:location ?templateMotifSequenceMatchRegionP07003319 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07003321 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07003MF_00850314 .
?templateMotifSequenceMatchRegionP07003319 faldo:begin ?templateMotifSequenceMatchBeginP07003320 .
?templateMotifSequenceMatchBeginP07003320 faldo:position ?templateMotifSequenceMatchBeginPositionP07003315 ;
faldo:reference isoform:P07003-1 .
?templateMotifSequenceProfileAlignmentOperationP07003321 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
?targetMotifMatch322 faldo:location ?targetMotifMatchRegionMatch323 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00850325 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07003MF_00850316 .
?targetMotifMatchRegionMatch323 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00850324 .
?targetMotifMatchRegionMatchBeginMF_00850324 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00850317 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00850325 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07003MF_00850314, 1, (STRLEN(?templateMotifCigarP07003MF_00850314) - STRLEN(REPLACE(?templateMotifCigarP07003MF_00850314, CONCAT('^(?:-*[^-]){', STR(((292 - ?templateMotifSequenceMatchBeginPositionP07003315) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1326) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07003MF_00850316, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850316) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850316, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1326), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07003MF_00850316, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850316) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850316, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1326), '}'), '')))), '[^-]', ''))) AS ?step2327) .
BIND(((?step2327 + ?targetMotifMatchRegionMatchBeginPositionMF_00850317) - 1) AS ?thisPositionOn101) .
BIND(?thisPositionOn101 AS ?thisPositionOn102) .
BIND(?this AS ?pfs1t328) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfsb98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfse99) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn101, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a97')) AS ?annotation97) .
BIND(?this AS ?pfs96) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch333 faldo:location ?templateMotifSequenceMatchRegionP07003334 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP07003336 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP07003MF_00850329 .
?templateMotifSequenceMatchRegionP07003334 faldo:begin ?templateMotifSequenceMatchBeginP07003335 .
?templateMotifSequenceMatchBeginP07003335 faldo:position ?templateMotifSequenceMatchBeginPositionP07003330 ;
faldo:reference isoform:P07003-1 .
?templateMotifSequenceProfileAlignmentOperationP07003336 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
?targetMotifMatch337 faldo:location ?targetMotifMatchRegionMatch338 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00850340 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP07003MF_00850331 .
?targetMotifMatchRegionMatch338 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00850339 .
?targetMotifMatchRegionMatchBeginMF_00850339 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00850332 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00850340 edam:has_input signature:MF_00850 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP07003MF_00850329, 1, (STRLEN(?templateMotifCigarP07003MF_00850329) - STRLEN(REPLACE(?templateMotifCigarP07003MF_00850329, CONCAT('^(?:-*[^-]){', STR(((465 - ?templateMotifSequenceMatchBeginPositionP07003330) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1341) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP07003MF_00850331, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850331) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850331, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1341), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP07003MF_00850331, 1, (STRLEN(?targetMotifMatchCigarP07003MF_00850331) - STRLEN(REPLACE(?targetMotifMatchCigarP07003MF_00850331, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1341), '}'), '')))), '[^-]', ''))) AS ?step2342) .
BIND(((?step2342 + ?targetMotifMatchRegionMatchBeginPositionMF_00850332) - 1) AS ?thisPositionOn107) .
BIND(?thisPositionOn107 AS ?thisPositionOn108) .
BIND(?this AS ?pfs1t343) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfsb105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfse106) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn107, 1) = 'F')) .
BIND(URI(CONCAT(STR(?this), '#MF_00850a104')) AS ?annotation104) .
BIND(?this AS ?pfs103) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:proteome .
} UNION {
?this up:proteome ?p344 .
?p344 skos:narrower .
}
BIND(?this AS ?case14) .
}
OPTIONAL {
?this a up:Protein .
{
FILTER (! (EXISTS {
{
?this up:proteome .
} UNION {
?this up:proteome ?p345 .
?p345 skos:narrower .
}
})) .
} UNION {
{
?this up:proteome .
} UNION {
?this up:proteome ?p346 .
?p346 skos:narrower .
}
}
BIND(?this AS ?case15) .
}
OPTIONAL {
?this up:annotation ?samcc347 ;
up:sequence ?thisSequence .
?samcc347 up:range ?samccr348 ;
rdf:type up:Coiled_Coil_Annotation .
?samccr348 faldo:begin ?samccb349 ;
faldo:end ?samcce350 .
?samccb349 faldo:position ?samccbp351 ;
faldo:reference ?thisSequence .
?samcce350 faldo:position ?samccep352 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam109) .
}
BIND(URI(CONCAT(STR(?this), '#MF_00850a115')) AS ?keyword115) .
}
"xsd:string |
