| http://purl.uniprot.org/unirules/MF_01106#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:384391 up:source unirule:MF_01106 .
_:384392 up:source unirule:MF_01106 .
_:384393 up:source unirule:MF_01106 .
_:384394 up:source unirule:MF_01106 .
_:384395 up:source unirule:MF_01106 .
_:384396 up:source unirule:MF_01106 .
_:384397 up:source unirule:MF_01106 .
_:384398 up:source unirule:MF_01106 .
_:384399 up:source unirule:MF_01106 .
_:384400 up:source unirule:MF_01106 .
_:384401 up:source unirule:MF_01106 .
_:384402 up:fullName 'Glutamate N-acetyltransferase alpha chain' ;
rdf:type up:Structured_Name .
_:384403 up:source unirule:MF_01106 .
_:384404 up:fullName 'Glutamate N-acetyltransferase beta chain' ;
rdf:type up:Structured_Name .
_:384405 up:source unirule:MF_01106 .
_:384406 up:ecName '2.3.1.35' ;
up:fullName 'Glutamate N-acetyltransferase' ;
rdf:type up:Structured_Name .
_:384407 up:fullName 'Ornithine acetyltransferase' ;
up:shortName 'OATase' ;
rdf:type up:Structured_Name .
_:384408 up:fullName 'Ornithine transacetylase' ;
rdf:type up:Structured_Name .
_:384409 up:source unirule:MF_01106 .
_:384410 up:ecName '2.3.1.1' ;
up:fullName 'Amino-acid acetyltransferase' ;
rdf:type up:Structured_Name .
_:384411 up:fullName 'N-acetylglutamate synthase' ;
up:shortName 'AGSase' ;
rdf:type up:Structured_Name .
_:384412 up:source unirule:MF_01106 .
_:384413 up:fullName 'Arginine biosynthesis bifunctional protein ArgJ alpha chain' ;
rdf:type up:Structured_Name .
_:384414 up:source unirule:MF_01106 .
_:384415 up:fullName 'Arginine biosynthesis bifunctional protein ArgJ beta chain' ;
rdf:type up:Structured_Name .
_:384416 up:source unirule:MF_01106 .
_:384417 up:source unirule:MF_01106 .
_:384418 up:source unirule:MF_01106 .
_:384419 up:source unirule:MF_01106 .
_:384420 up:source unirule:MF_01106 .
_:384421 up:source unirule:MF_01106 .
_:384422 up:source unirule:MF_01106 .
_:384423 up:source unirule:MF_01106 .
_:384424 up:source unirule:MF_01106 .
_:384425 up:source unirule:MF_01106 .
_:384426 up:source unirule:MF_01106 .
_:384427 up:source unirule:MF_01106 .
_:384428 up:source unirule:MF_01106 .
_:384429 up:source unirule:MF_01106 .
_:384430 up:source unirule:MF_01106 .
_:384431 up:source unirule:MF_01106 .
_:384432 up:source unirule:MF_01106 .
_:384433 up:source unirule:MF_01106 .
_:384434 up:source unirule:MF_01106 .
_:384435 up:source unirule:MF_01106 .
_:384436 up:source unirule:MF_01106 .
_:384437 up:source unirule:MF_01106 .
?this up:annotation ?annotation0 ,
?annotation1 ,
?annotation3 ;
up:classifiedWith GO:0005737 ,
GO:0006526 ,
keyword:12 ,
keyword:28 ,
keyword:55 ,
keyword:68 ,
keyword:808 ,
keyword:963 ;
up:component ?namedpart4 ,
?namedpart5 ,
?namedpart8 ,
?namedpart9 ;
up:domain ?namedpart6 ,
?namedpart7 .
?annotation0 a up:Subunit_Annotation ;
rdfs:comment 'Heterotetramer of two alpha and two beta chains.' .
?annotation1 a up:Subcellular_Location_Annotation .
?annotation1li2 up:cellularComponent .
?annotation3 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the ArgJ family.' .
?namedpart4 up:recommendedName _:384402 .
?namedpart5 up:recommendedName _:384404 .
?namedpart6 up:alternativeName _:384407 ,
_:384408 ;
up:recommendedName _:384406 .
?namedpart7 up:alternativeName _:384411 ;
up:recommendedName _:384410 .
?namedpart8 up:recommendedName _:384413 .
?namedpart9 up:recommendedName _:384415 .
?case10 up:alternativeName ?name12 ,
?name13 ;
up:classifiedWith GO:0004358 ;
up:recommendedName ?name11 .
?name11 up:ecName '2.3.1.35' ;
up:fullName 'Glutamate N-acetyltransferase' ;
rdf:type up:Structured_Name .
?name12 up:fullName 'Ornithine acetyltransferase' ;
up:shortName 'OATase' ;
rdf:type up:Structured_Name .
?name13 up:fullName 'Ornithine transacetylase' ;
rdf:type up:Structured_Name .
?case14 up:classifiedWith GO:0004042 ,
GO:0004358 ,
keyword:511 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf ?molecule26 .
?molecule26 rdfs:label 'substrate' .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf ?molecule34 .
?molecule34 rdfs:label 'substrate' .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf ?molecule42 .
?molecule42 rdfs:label 'substrate' .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf ?molecule50 .
?molecule50 rdfs:label 'substrate' .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf ?molecule58 .
?molecule58 rdfs:label 'substrate' .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf ?molecule66 .
?molecule66 rdfs:label 'substrate' .
?pfs69 up:annotation ?annotation70 .
?annotation70 faldo:begin ?pfsb71 ;
faldo:end ?pfse72 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Involved in the stabilization of negative charge on the oxyanion by the formation of the oxyanion hole' .
?pfsb71 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse72 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfs75 up:annotation ?annotation76 .
?annotation76 faldo:begin ?pfsb77 ;
faldo:end ?pfse78 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Involved in the stabilization of negative charge on the oxyanion by the formation of the oxyanion hole' .
?pfsb77 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse78 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfs81 up:annotation ?annotation82 .
?annotation82 faldo:begin ?pfsb83 ;
faldo:end ?pfse84 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage; by autolysis' .
?pfsb83 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfse84 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?pfs87 up:annotation ?annotation88 .
?annotation88 faldo:begin ?pfsb89 ;
faldo:end ?pfse90 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Arginine biosynthesis bifunctional protein ArgJ alpha chain' .
?pfsb89 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse90 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfs93 up:annotation ?annotation94 .
?annotation94 faldo:begin ?pfsb95 ;
faldo:end ?pfse96 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Arginine biosynthesis bifunctional protein ArgJ beta chain' .
?pfsb95 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?pfse96 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?pfs99 up:annotation ?annotation100 .
?annotation100 faldo:begin ?pfsb101 ;
faldo:end ?pfse102 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Glutamate N-acetyltransferase alpha chain' .
?pfsb101 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfse102 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
?pfs105 up:annotation ?annotation106 .
?annotation106 faldo:begin ?pfsb107 ;
faldo:end ?pfse108 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Glutamate N-acetyltransferase beta chain' .
?pfsb107 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?pfse108 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
_:384438 a rdf:Statement ;
up:attribution _:384391 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:384439 a rdf:Statement ;
up:attribution _:384392 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:384440 a rdf:Statement ;
up:attribution _:384393 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:384441 a rdf:Statement ;
up:attribution _:384394 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:384442 a rdf:Statement ;
up:attribution _:384395 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:384443 a rdf:Statement ;
up:attribution _:384396 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:55 .
_:384444 a rdf:Statement ;
up:attribution _:384397 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:68 .
_:384445 a rdf:Statement ;
up:attribution _:384398 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:384446 a rdf:Statement ;
up:attribution _:384399 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:12 .
_:384447 a rdf:Statement ;
up:attribution _:384400 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006526 .
_:384448 a rdf:Statement ;
up:attribution _:384401 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:384449 a rdf:Statement ;
up:attribution _:384403 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart4 .
_:384450 a rdf:Statement ;
up:attribution _:384405 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart5 .
_:384451 a rdf:Statement ;
up:attribution _:384409 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart6 .
_:384452 a rdf:Statement ;
up:attribution _:384412 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart7 .
_:384453 a rdf:Statement ;
up:attribution _:384414 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart8 .
_:384454 a rdf:Statement ;
up:attribution _:384416 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart9 .
_:384455 a rdf:Statement ;
up:attribution _:384417 ;
rdf:subject ?case10 ;
rdf:predicate up:recommendedName ;
rdf:object ?name11 .
_:384456 a rdf:Statement ;
up:attribution _:384418 ;
rdf:subject ?case10 ;
rdf:predicate up:alternativeName ;
rdf:object ?name12 .
_:384457 a rdf:Statement ;
up:attribution _:384419 ;
rdf:subject ?case10 ;
rdf:predicate up:alternativeName ;
rdf:object ?name13 .
_:384458 a rdf:Statement ;
up:attribution _:384420 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004358 .
_:384459 a rdf:Statement ;
up:attribution _:384421 ;
rdf:subject ?case14 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:511 .
_:384460 a rdf:Statement ;
up:attribution _:384422 ;
rdf:subject ?case14 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004358 .
_:384461 a rdf:Statement ;
up:attribution _:384423 ;
rdf:subject ?case14 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004042 .
_:384462 a rdf:Statement ;
up:source unirule:MF_01106 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:384463 a rdf:Statement ;
up:attribution _:384424 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:384464 a rdf:Statement ;
up:source unirule:MF_01106 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:384465 a rdf:Statement ;
up:attribution _:384425 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:384466 a rdf:Statement ;
up:source unirule:MF_01106 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:384467 a rdf:Statement ;
up:attribution _:384426 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:384468 a rdf:Statement ;
up:source unirule:MF_01106 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:384469 a rdf:Statement ;
up:attribution _:384427 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:384470 a rdf:Statement ;
up:source unirule:MF_01106 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:384471 a rdf:Statement ;
up:attribution _:384428 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:384472 a rdf:Statement ;
up:source unirule:MF_01106 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:384473 a rdf:Statement ;
up:attribution _:384429 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:384474 a rdf:Statement ;
up:source unirule:MF_01106 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:384475 a rdf:Statement ;
up:attribution _:384430 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:384476 a rdf:Statement ;
up:source unirule:MF_01106 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:384477 a rdf:Statement ;
up:attribution _:384431 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:384478 a rdf:Statement ;
up:source unirule:MF_01106 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:384479 a rdf:Statement ;
up:attribution _:384432 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:384480 a rdf:Statement ;
up:source unirule:MF_01106 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:384481 a rdf:Statement ;
up:attribution _:384433 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:384482 a rdf:Statement ;
up:source unirule:MF_01106 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:384483 a rdf:Statement ;
up:attribution _:384434 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:384484 a rdf:Statement ;
up:source unirule:MF_01106 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:384485 a rdf:Statement ;
up:attribution _:384435 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:384486 a rdf:Statement ;
up:source unirule:MF_01106 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
_:384487 a rdf:Statement ;
up:attribution _:384436 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
_:384488 a rdf:Statement ;
up:source unirule:MF_01106 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:384489 a rdf:Statement ;
up:attribution _:384437 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01106
#Rule MF_01106 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-06-12
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01106 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01106 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
}
BIND(URI(CONCAT(STR(?this), '#MF_01106a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a4')) AS ?namedpart4) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a5')) AS ?namedpart5) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a6')) AS ?namedpart6) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a7')) AS ?namedpart7) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a8')) AS ?namedpart8) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a9')) AS ?namedpart9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch115 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3116 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3118 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPZ3MF_01106111 .
?templateMotifSequenceMatchRegionP9WPZ3116 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3117 .
?templateMotifSequenceMatchBeginP9WPZ3117 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3112 ;
faldo:reference isoform:P9WPZ3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPZ3118 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch119 faldo:location ?targetMotifMatchRegionMatch120 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106122 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106113 .
?targetMotifMatchRegionMatch120 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106121 .
?targetMotifMatchRegionMatchBeginMF_01106121 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106114 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106122 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106111, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106111) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106111, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP9WPZ3112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106113, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106113) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106113, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106113) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) .
BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_01106114) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch130 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3131 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3133 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPZ3MF_01106126 .
?templateMotifSequenceMatchRegionP9WPZ3131 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3132 .
?templateMotifSequenceMatchBeginP9WPZ3132 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3127 ;
faldo:reference isoform:P9WPZ3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPZ3133 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch134 faldo:location ?targetMotifMatchRegionMatch135 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106137 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106128 .
?targetMotifMatchRegionMatch135 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106136 .
?targetMotifMatchRegionMatchBeginMF_01106136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106129 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106137 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106126, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106126) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106126, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionP9WPZ3127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106128, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106128) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106128, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106128) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) .
BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_01106129) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t140) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch145 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3146 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3148 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPZ3MF_01106141 .
?templateMotifSequenceMatchRegionP9WPZ3146 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3147 .
?templateMotifSequenceMatchBeginP9WPZ3147 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3142 ;
faldo:reference isoform:P9WPZ3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPZ3148 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch149 faldo:location ?targetMotifMatchRegionMatch150 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106152 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106143 .
?targetMotifMatchRegionMatch150 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106151 .
?targetMotifMatchRegionMatchBeginMF_01106151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106144 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106152 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106141, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106141) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106141, CONCAT('^(?:-*[^-]){', STR(((189 - ?templateMotifSequenceMatchBeginPositionP9WPZ3142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106143, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106143) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106143, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106143) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) .
BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_01106144) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t155) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch160 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3161 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3163 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPZ3MF_01106156 .
?templateMotifSequenceMatchRegionP9WPZ3161 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3162 .
?templateMotifSequenceMatchBeginP9WPZ3162 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3157 ;
faldo:reference isoform:P9WPZ3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPZ3163 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch164 faldo:location ?targetMotifMatchRegionMatch165 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106167 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106158 .
?targetMotifMatchRegionMatch165 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106166 .
?targetMotifMatchRegionMatchBeginMF_01106166 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106159 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106167 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106156, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106156) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106156, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP9WPZ3157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106158, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106158) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106158, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106158) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) .
BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_01106159) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t170) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse40) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch175 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3176 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3178 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPZ3MF_01106171 .
?templateMotifSequenceMatchRegionP9WPZ3176 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3177 .
?templateMotifSequenceMatchBeginP9WPZ3177 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3172 ;
faldo:reference isoform:P9WPZ3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPZ3178 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch179 faldo:location ?targetMotifMatchRegionMatch180 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106182 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106173 .
?targetMotifMatchRegionMatch180 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106181 .
?targetMotifMatchRegionMatchBeginMF_01106181 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106174 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106182 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106171, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106171) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106171, CONCAT('^(?:-*[^-]){', STR(((280 - ?templateMotifSequenceMatchBeginPositionP9WPZ3172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106173, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106173) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106173, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106173) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), '')))), '[^-]', ''))) AS ?step2184) .
BIND(((?step2184 + ?targetMotifMatchRegionMatchBeginPositionMF_01106174) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t185) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch190 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3191 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3193 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPZ3MF_01106186 .
?templateMotifSequenceMatchRegionP9WPZ3191 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3192 .
?templateMotifSequenceMatchBeginP9WPZ3192 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3187 ;
faldo:reference isoform:P9WPZ3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPZ3193 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch194 faldo:location ?targetMotifMatchRegionMatch195 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106197 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106188 .
?targetMotifMatchRegionMatch195 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106196 .
?targetMotifMatchRegionMatchBeginMF_01106196 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106189 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106197 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106186, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106186) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106186, CONCAT('^(?:-*[^-]){', STR(((399 - ?templateMotifSequenceMatchBeginPositionP9WPZ3187) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106188, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106188) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106188, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106188) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), '')))), '[^-]', ''))) AS ?step2199) .
BIND(((?step2199 + ?targetMotifMatchRegionMatchBeginPositionMF_01106189) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t200) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch205 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3206 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3208 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPZ3MF_01106201 .
?templateMotifSequenceMatchRegionP9WPZ3206 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3207 .
?templateMotifSequenceMatchBeginP9WPZ3207 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3202 ;
faldo:reference isoform:P9WPZ3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPZ3208 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch209 faldo:location ?targetMotifMatchRegionMatch210 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106212 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106203 .
?targetMotifMatchRegionMatch210 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106211 .
?targetMotifMatchRegionMatchBeginMF_01106211 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106204 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106212 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106201, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106201) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106201, CONCAT('^(?:-*[^-]){', STR(((404 - ?templateMotifSequenceMatchBeginPositionP9WPZ3202) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1213) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106203, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106203) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106203, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106203) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), '')))), '[^-]', ''))) AS ?step2214) .
BIND(((?step2214 + ?targetMotifMatchRegionMatchBeginPositionMF_01106204) - 1) AS ?thisPositionOn67) .
BIND(?thisPositionOn67 AS ?thisPositionOn68) .
BIND(?this AS ?pfs1t215) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse64) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch220 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3221 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3223 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPZ3MF_01106216 .
?templateMotifSequenceMatchRegionP9WPZ3221 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3222 .
?templateMotifSequenceMatchBeginP9WPZ3222 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3217 ;
faldo:reference isoform:P9WPZ3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPZ3223 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch224 faldo:location ?targetMotifMatchRegionMatch225 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106227 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106218 .
?targetMotifMatchRegionMatch225 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106226 .
?targetMotifMatchRegionMatchBeginMF_01106226 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106219 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106227 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106216, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106216) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106216, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionP9WPZ3217) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1228) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106218, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106218) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1228), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106218, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106218) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1228), '}'), '')))), '[^-]', ''))) AS ?step2229) .
BIND(((?step2229 + ?targetMotifMatchRegionMatchBeginPositionMF_01106219) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs1t230) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse72) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch235 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3236 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3238 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPZ3MF_01106231 .
?templateMotifSequenceMatchRegionP9WPZ3236 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3237 .
?templateMotifSequenceMatchBeginP9WPZ3237 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3232 ;
faldo:reference isoform:P9WPZ3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPZ3238 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch239 faldo:location ?targetMotifMatchRegionMatch240 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106242 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106233 .
?targetMotifMatchRegionMatch240 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106241 .
?targetMotifMatchRegionMatchBeginMF_01106241 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106234 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106242 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106231, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106231) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106231, CONCAT('^(?:-*[^-]){', STR(((128 - ?templateMotifSequenceMatchBeginPositionP9WPZ3232) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1243) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106233, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106233) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106233, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106233, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106233) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106233, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), '')))), '[^-]', ''))) AS ?step2244) .
BIND(((?step2244 + ?targetMotifMatchRegionMatchBeginPositionMF_01106234) - 1) AS ?thisPositionOn79) .
BIND(?thisPositionOn79 AS ?thisPositionOn80) .
BIND(?this AS ?pfs1t245) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse78) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch250 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3251 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3253 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPZ3MF_01106246 .
?templateMotifSequenceMatchRegionP9WPZ3251 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3252 .
?templateMotifSequenceMatchBeginP9WPZ3252 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3247 ;
faldo:reference isoform:P9WPZ3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPZ3253 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch254 faldo:location ?targetMotifMatchRegionMatch255 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106257 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106248 .
?targetMotifMatchRegionMatch255 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106256 .
?targetMotifMatchRegionMatchBeginMF_01106256 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106249 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106257 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106246, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106246) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106246, CONCAT('^(?:-*[^-]){', STR(((199 - ?templateMotifSequenceMatchBeginPositionP9WPZ3247) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1258) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106248, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106248) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106248, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106248) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), '')))), '[^-]', ''))) AS ?step2259) .
BIND(((?step2259 + ?targetMotifMatchRegionMatchBeginPositionMF_01106249) - 1) AS ?thisPositionOn85) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106246, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106246) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106246, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP9WPZ3247) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1260) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106248, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106248) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106248, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106248) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), '')))), '[^-]', ''))) AS ?step2261) .
BIND(((?step2261 + ?targetMotifMatchRegionMatchBeginPositionMF_01106249) - 1) AS ?thisPositionOn86) .
BIND(?this AS ?pfs1t262) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse84) .
FILTER (REGEX('[AG][TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn85, (?thisPositionOn86 - ?thisPositionOn85)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a82')) AS ?annotation82) .
BIND(?this AS ?pfs81) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch268 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3269 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3271 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPZ3MF_01106264 .
?templateMotifSequenceMatchRegionP9WPZ3269 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3270 .
?templateMotifSequenceMatchBeginP9WPZ3270 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3265 ;
faldo:reference isoform:P9WPZ3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPZ3271 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch272 faldo:location ?targetMotifMatchRegionMatch273 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106275 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106266 .
?targetMotifMatchRegionMatch273 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106274 .
?targetMotifMatchRegionMatchBeginMF_01106274 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106267 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106275 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon263 {taxon:183925 taxon:183939 taxon:224756 taxon:183988}
?thisOrganism rdfs:subClassOf+ ?supertaxon263 .
})) .
BIND(1 AS ?thisPositionOn91) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106264, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106264) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106264, CONCAT('^(?:-*[^-]){', STR(((199 - ?templateMotifSequenceMatchBeginPositionP9WPZ3265) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1276) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106266, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106266) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106266, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106266) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), '')))), '[^-]', ''))) AS ?step2277) .
BIND(((?step2277 + ?targetMotifMatchRegionMatchBeginPositionMF_01106267) - 1) AS ?thisPositionOn92) .
BIND(?this AS ?pfs2t278) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse90) .
FILTER ((BOUND(?thisPositionOn91) && BOUND(?thisPositionOn92))) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a88')) AS ?annotation88) .
BIND(?this AS ?pfs87) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch284 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3285 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3287 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPZ3MF_01106280 .
?templateMotifSequenceMatchRegionP9WPZ3285 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3286 .
?templateMotifSequenceMatchBeginP9WPZ3286 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3281 ;
faldo:reference isoform:P9WPZ3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPZ3287 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch288 faldo:location ?targetMotifMatchRegionMatch289 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106291 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106282 .
?targetMotifMatchRegionMatch289 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106290 .
?targetMotifMatchRegionMatchBeginMF_01106290 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106283 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106291 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon279 {taxon:183925 taxon:183939 taxon:224756 taxon:183988}
?thisOrganism rdfs:subClassOf+ ?supertaxon279 .
})) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106280, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106280) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106280, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP9WPZ3281) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1292) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106282, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106282) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106282, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106282) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), '')))), '[^-]', ''))) AS ?step2293) .
BIND(((?step2293 + ?targetMotifMatchRegionMatchBeginPositionMF_01106283) - 1) AS ?thisPositionOn97) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn98) .
BIND(?this AS ?pfs2t294) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfsb95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfse96) .
FILTER ((BOUND(?thisPositionOn97) && BOUND(?thisPositionOn98))) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a94')) AS ?annotation94) .
BIND(?this AS ?pfs93) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch300 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3301 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3303 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPZ3MF_01106296 .
?templateMotifSequenceMatchRegionP9WPZ3301 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3302 .
?templateMotifSequenceMatchBeginP9WPZ3302 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3297 ;
faldo:reference isoform:P9WPZ3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPZ3303 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch304 faldo:location ?targetMotifMatchRegionMatch305 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106307 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106298 .
?targetMotifMatchRegionMatch305 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106306 .
?targetMotifMatchRegionMatchBeginMF_01106306 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106299 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106307 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon295 {taxon:224756 taxon:183939 taxon:183925 taxon:183988}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon295 .
BIND(1 AS ?thisPositionOn103) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106296, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106296) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106296, CONCAT('^(?:-*[^-]){', STR(((199 - ?templateMotifSequenceMatchBeginPositionP9WPZ3297) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1308) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106298, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106298) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1308), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106298, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106298) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1308), '}'), '')))), '[^-]', ''))) AS ?step2309) .
BIND(((?step2309 + ?targetMotifMatchRegionMatchBeginPositionMF_01106299) - 1) AS ?thisPositionOn104) .
BIND(?this AS ?pfs3t310) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse102) .
FILTER ((BOUND(?thisPositionOn103) && BOUND(?thisPositionOn104))) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a100')) AS ?annotation100) .
BIND(?this AS ?pfs99) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch316 faldo:location ?templateMotifSequenceMatchRegionP9WPZ3317 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WPZ3319 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP9WPZ3MF_01106312 .
?templateMotifSequenceMatchRegionP9WPZ3317 faldo:begin ?templateMotifSequenceMatchBeginP9WPZ3318 .
?templateMotifSequenceMatchBeginP9WPZ3318 faldo:position ?templateMotifSequenceMatchBeginPositionP9WPZ3313 ;
faldo:reference isoform:P9WPZ3-1 .
?templateMotifSequenceProfileAlignmentOperationP9WPZ3319 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
?targetMotifMatch320 faldo:location ?targetMotifMatchRegionMatch321 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01106323 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP9WPZ3MF_01106314 .
?targetMotifMatchRegionMatch321 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01106322 .
?targetMotifMatchRegionMatchBeginMF_01106322 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01106315 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01106323 edam:has_input signature:MF_01106 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon311 {taxon:224756 taxon:183939 taxon:183925 taxon:183988}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon311 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WPZ3MF_01106312, 1, (STRLEN(?templateMotifCigarP9WPZ3MF_01106312) - STRLEN(REPLACE(?templateMotifCigarP9WPZ3MF_01106312, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP9WPZ3313) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1324) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106314, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106314) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WPZ3MF_01106314, 1, (STRLEN(?targetMotifMatchCigarP9WPZ3MF_01106314) - STRLEN(REPLACE(?targetMotifMatchCigarP9WPZ3MF_01106314, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), '')))), '[^-]', ''))) AS ?step2325) .
BIND(((?step2325 + ?targetMotifMatchRegionMatchBeginPositionMF_01106315) - 1) AS ?thisPositionOn109) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn110) .
BIND(?this AS ?pfs3t326) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfsb107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfse108) .
FILTER ((BOUND(?thisPositionOn109) && BOUND(?thisPositionOn110))) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a106')) AS ?annotation106) .
BIND(?this AS ?pfs105) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon327 {taxon:183925 taxon:183939 taxon:224756 taxon:183988}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon327 .
BIND(?this AS ?case10) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a11')) AS ?name11) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a12')) AS ?name12) .
BIND(URI(CONCAT(STR(?this), '#MF_01106a13')) AS ?name13) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon328 {taxon:183925 taxon:183939 taxon:224756 taxon:183988}
?thisOrganism rdfs:subClassOf+ ?supertaxon328 .
})) .
BIND(?this AS ?case14) .
}
}
"xsd:string |
