| http://purl.uniprot.org/unirules/MF_01261#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:445826 up:source unirule:MF_01261 .
_:445827 up:ecName '2.7.7.72' ;
up:fullName 'CCA-adding enzyme' ;
rdf:type up:Structured_Name .
_:445828 up:fullName 'CCA tRNA nucleotidyltransferase' ;
rdf:type up:Structured_Name .
_:445829 up:fullName 'tRNA CCA-pyrophosphorylase' ;
rdf:type up:Structured_Name .
_:445830 up:fullName 'tRNA adenylyl-/cytidylyl-transferase' ;
rdf:type up:Structured_Name .
_:445831 up:fullName 'tRNA nucleotidyltransferase' ;
rdf:type up:Structured_Name .
_:445832 up:fullName 'tRNA-NT' ;
rdf:type up:Structured_Name .
_:445833 up:source unirule:MF_01261 .
_:445834 up:ecName '3.1.3.-' ;
up:fullName "2'-nucleotidase" ;
rdf:type up:Structured_Name .
_:445835 up:source unirule:MF_01261 .
_:445836 up:ecName '3.1.4.-' ;
up:fullName "2',3'-cyclic phosphodiesterase" ;
rdf:type up:Structured_Name .
_:445837 up:source unirule:MF_01261 .
_:445838 up:ecName '3.1.3.-' ;
up:fullName 'Phosphatase' ;
rdf:type up:Structured_Name .
_:445839 up:source unirule:MF_01261 .
_:445840 up:source unirule:MF_01261 .
_:445841 up:source unirule:MF_01261 .
_:445842 up:source unirule:MF_01261 .
_:445843 up:source unirule:MF_01261 .
_:445844 up:source unirule:MF_01261 .
_:445845 up:source unirule:MF_01261 .
_:445846 up:source unirule:MF_01261 .
_:445847 up:source unirule:MF_01261 .
_:445848 up:source unirule:MF_01261 .
_:445849 up:source unirule:MF_01261 .
_:445850 up:source unirule:MF_01261 .
_:445851 up:source unirule:MF_01261 .
_:445852 up:source unirule:MF_01261 .
_:445853 up:source unirule:MF_01261 .
_:445854 up:source unirule:MF_01261 .
_:445855 up:source unirule:MF_01261 .
_:445856 up:source unirule:MF_01261 .
_:445857 up:source unirule:MF_01261 .
_:445858 up:source unirule:MF_01261 .
_:445859 up:source unirule:MF_01261 .
_:445860 up:source unirule:MF_01261 .
_:445861 up:source unirule:MF_01261 .
_:445862 up:source unirule:MF_01261 .
_:445863 up:source unirule:MF_01261 .
_:445864 up:source unirule:MF_01261 .
_:445865 up:source unirule:MF_01261 .
_:445866 up:source unirule:MF_01261 .
_:445867 up:source unirule:MF_01261 .
_:445868 up:source unirule:MF_01261 .
_:445869 up:source unirule:MF_01261 .
_:445870 up:source unirule:MF_01261 .
_:445871 up:source unirule:MF_01261 .
_:445872 up:source unirule:MF_01261 .
_:445873 up:source unirule:MF_01261 .
_:445874 up:source unirule:MF_01261 .
_:445875 up:source unirule:MF_01261 .
_:445876 up:source unirule:MF_01261 .
_:445877 up:source unirule:MF_01261 .
_:445878 up:source unirule:MF_01261 .
_:445879 up:source unirule:MF_01261 .
_:445880 up:source unirule:MF_01261 .
_:445881 up:source unirule:MF_01261 .
?this up:annotation ?annotation6 ,
?annotation7 ,
?annotation9 ,
?annotation11 ,
?annotation12 ,
?annotation13 ,
?annotation14 ,
?annotation15 ,
?annotation16 ;
up:classifiedWith GO:0000049 ,
GO:0000166 ,
GO:0000287 ,
GO:0001680 ,
GO:0004112 ,
GO:0004810 ,
GO:0005524 ,
GO:0016791 ,
keyword:378 ,
keyword:460 ,
keyword:479 ,
keyword:511 ,
keyword:533 ,
keyword:547 ,
keyword:548 ,
keyword:67 ,
keyword:692 ,
keyword:694 ,
keyword:808 ,
keyword:819 ;
up:domain ?namedpart1 ,
?namedpart2 ,
?namedpart3 ,
?namedpart4 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Multifunctional CCA protein' ;
rdf:type up:Structured_Name .
?namedpart1 up:alternativeName _:445828 ,
_:445829 ,
_:445830 ,
_:445831 ,
_:445832 ;
up:recommendedName _:445827 .
?namedpart2 up:recommendedName _:445834 .
?namedpart3 up:recommendedName _:445836 .
?namedpart4 up:recommendedName _:445838 .
?gene5 skos:prefLabel 'cca' .
?annotation6 a up:Function_Annotation ;
rdfs:comment "Catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. tRNA 3'-terminal CCA addition is required both for tRNA processing and repair. Also involved in tRNA surveillance by mediating tandem CCA addition to generate a CCACCA at the 3' terminus of unstable tRNAs. While stable tRNAs receive only 3'-terminal CCA, unstable tRNAs are marked with CCACCA and rapidly degraded." .
?annotation7 up:activity ?activity8 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity8 up:catalyticActivity ;
up:enzymeClass .
?annotation9 up:activity ?activity10 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity10 up:catalyticActivity .
?annotation11 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Magnesium is required for nucleotidyltransferase activity.' .
?annotation12 up:cofactor chebi:49786 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Nickel for phosphatase activity.' .
?annotation13 a up:Subunit_Annotation ;
rdfs:comment 'Monomer. Can also form homodimers and oligomers.' .
?annotation14 a up:Domain_Annotation ;
rdfs:comment 'Comprises two domains: an N-terminal domain containing the nucleotidyltransferase activity and a C-terminal HD domain associated with both phosphodiesterase and phosphatase activities.' .
?annotation15 a up:Annotation ;
rdfs:comment 'A single active site specifically recognizes both ATP and CTP and is responsible for their addition.' .
?annotation16 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. Bacterial CCA-adding enzyme type 1 subfamily.' .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:18420 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:18420 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:30616 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:37563 .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:30616 .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf chebi:37563 .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
up:ligand ?ligand63 ;
rdf:type up:Binding_Site_Annotation .
?pfsb61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand63 rdfs:subClassOf chebi:30616 .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
up:ligand ?ligand70 ;
rdf:type up:Binding_Site_Annotation .
?pfsb68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?ligand70 rdfs:subClassOf chebi:37563 .
?pfs73 up:annotation ?annotation74 .
?annotation74 faldo:begin ?pfsb75 ;
faldo:end ?pfse76 ;
up:ligand ?ligand77 ;
rdf:type up:Binding_Site_Annotation .
?pfsb75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfse76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?ligand77 rdfs:subClassOf chebi:30616 .
?pfs80 up:annotation ?annotation81 .
?annotation81 faldo:begin ?pfsb82 ;
faldo:end ?pfse83 ;
up:ligand ?ligand84 ;
rdf:type up:Binding_Site_Annotation .
?pfsb82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfse83 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?ligand84 rdfs:subClassOf chebi:37563 .
?pfs87 up:annotation ?annotation88 .
?annotation88 faldo:begin ?pfsb89 ;
faldo:end ?pfse90 ;
up:ligand ?ligand91 ;
rdf:type up:Binding_Site_Annotation .
?pfsb89 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfse90 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?ligand91 rdfs:subClassOf chebi:30616 .
?pfs94 up:annotation ?annotation95 .
?annotation95 faldo:begin ?pfsb96 ;
faldo:end ?pfse97 ;
up:ligand ?ligand98 ;
rdf:type up:Binding_Site_Annotation .
?pfsb96 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?pfse97 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?ligand98 rdfs:subClassOf chebi:37563 .
_:445882 a rdf:Statement ;
up:attribution _:445826 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:445883 a rdf:Statement ;
up:attribution _:445833 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart1 .
_:445884 a rdf:Statement ;
up:attribution _:445835 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart2 .
_:445885 a rdf:Statement ;
up:attribution _:445837 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart3 .
_:445886 a rdf:Statement ;
up:attribution _:445839 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart4 .
_:445887 a rdf:Statement ;
up:attribution _:445840 ;
rdf:subject ?gene5 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene5 .
_:445888 a rdf:Statement ;
up:attribution _:445841 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:445889 a rdf:Statement ;
up:attribution _:445842 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:445890 a rdf:Statement ;
up:attribution _:445843 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:445891 a rdf:Statement ;
up:attribution _:445844 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:445892 a rdf:Statement ;
up:attribution _:445845 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:445893 a rdf:Statement ;
up:attribution _:445846 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:445894 a rdf:Statement ;
up:attribution _:445847 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:445895 a rdf:Statement ;
up:attribution _:445848 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:445896 a rdf:Statement ;
up:attribution _:445849 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:445897 a rdf:Statement ;
up:attribution _:445850 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:445898 a rdf:Statement ;
up:attribution _:445851 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:445899 a rdf:Statement ;
up:attribution _:445852 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:445900 a rdf:Statement ;
up:attribution _:445853 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:445901 a rdf:Statement ;
up:attribution _:445854 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:511 .
_:445902 a rdf:Statement ;
up:attribution _:445855 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:533 .
_:445903 a rdf:Statement ;
up:attribution _:445856 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:445904 a rdf:Statement ;
up:attribution _:445857 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:445905 a rdf:Statement ;
up:attribution _:445858 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:692 .
_:445906 a rdf:Statement ;
up:attribution _:445859 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:445907 a rdf:Statement ;
up:attribution _:445860 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:445908 a rdf:Statement ;
up:attribution _:445861 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:445909 a rdf:Statement ;
up:attribution _:445862 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000049 .
_:445910 a rdf:Statement ;
up:attribution _:445863 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000166 .
_:445911 a rdf:Statement ;
up:attribution _:445864 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:445912 a rdf:Statement ;
up:attribution _:445865 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004112 .
_:445913 a rdf:Statement ;
up:attribution _:445866 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004810 .
_:445914 a rdf:Statement ;
up:attribution _:445867 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:445915 a rdf:Statement ;
up:attribution _:445868 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016791 .
_:445916 a rdf:Statement ;
up:attribution _:445869 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0001680 .
_:445917 a rdf:Statement ;
up:source unirule:MF_01261 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:445918 a rdf:Statement ;
up:attribution _:445870 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:445919 a rdf:Statement ;
up:source unirule:MF_01261 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:445920 a rdf:Statement ;
up:attribution _:445871 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:445921 a rdf:Statement ;
up:source unirule:MF_01261 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:445922 a rdf:Statement ;
up:attribution _:445872 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:445923 a rdf:Statement ;
up:source unirule:MF_01261 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:445924 a rdf:Statement ;
up:attribution _:445873 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:445925 a rdf:Statement ;
up:source unirule:MF_01261 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:445926 a rdf:Statement ;
up:attribution _:445874 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:445927 a rdf:Statement ;
up:source unirule:MF_01261 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:445928 a rdf:Statement ;
up:attribution _:445875 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:445929 a rdf:Statement ;
up:source unirule:MF_01261 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:445930 a rdf:Statement ;
up:attribution _:445876 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:445931 a rdf:Statement ;
up:source unirule:MF_01261 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:445932 a rdf:Statement ;
up:attribution _:445877 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:445933 a rdf:Statement ;
up:source unirule:MF_01261 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:445934 a rdf:Statement ;
up:attribution _:445878 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:445935 a rdf:Statement ;
up:source unirule:MF_01261 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:445936 a rdf:Statement ;
up:attribution _:445879 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:445937 a rdf:Statement ;
up:source unirule:MF_01261 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:445938 a rdf:Statement ;
up:attribution _:445880 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:445939 a rdf:Statement ;
up:source unirule:MF_01261 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:445940 a rdf:Statement ;
up:attribution _:445881 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01261
#Rule MF_01261 Created by:? on:2005-07-29 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01261 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_01261a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a1')) AS ?namedpart1) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a2')) AS ?namedpart2) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a3')) AS ?namedpart3) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a4')) AS ?namedpart4) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a13')) AS ?annotation13) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a14')) AS ?annotation14) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a15')) AS ?annotation15) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a16')) AS ?annotation16) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionP06961106 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06961108 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06961MF_01261101 .
?templateMotifSequenceMatchRegionP06961106 faldo:begin ?templateMotifSequenceMatchBeginP06961107 .
?templateMotifSequenceMatchBeginP06961107 faldo:position ?templateMotifSequenceMatchBeginPositionP06961102 ;
faldo:reference isoform:P06961-1 .
?templateMotifSequenceProfileAlignmentOperationP06961108 edam:has_input signature:MF_01261 ;
rdf:type edam:operation_0300 .
?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01261112 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06961MF_01261103 .
?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01261111 .
?targetMotifMatchRegionMatchBeginMF_01261111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01261104 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01261112 edam:has_input signature:MF_01261 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06961MF_01261101, 1, (STRLEN(?templateMotifCigarP06961MF_01261101) - STRLEN(REPLACE(?templateMotifCigarP06961MF_01261101, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionP06961102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06961MF_01261103, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261103) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06961MF_01261103, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261103) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) .
BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_01261104) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t115) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch120 faldo:location ?templateMotifSequenceMatchRegionP06961121 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06961123 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06961MF_01261116 .
?templateMotifSequenceMatchRegionP06961121 faldo:begin ?templateMotifSequenceMatchBeginP06961122 .
?templateMotifSequenceMatchBeginP06961122 faldo:position ?templateMotifSequenceMatchBeginPositionP06961117 ;
faldo:reference isoform:P06961-1 .
?templateMotifSequenceProfileAlignmentOperationP06961123 edam:has_input signature:MF_01261 ;
rdf:type edam:operation_0300 .
?targetMotifMatch124 faldo:location ?targetMotifMatchRegionMatch125 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01261127 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06961MF_01261118 .
?targetMotifMatchRegionMatch125 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01261126 .
?targetMotifMatchRegionMatchBeginMF_01261126 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01261119 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01261127 edam:has_input signature:MF_01261 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06961MF_01261116, 1, (STRLEN(?templateMotifCigarP06961MF_01261116) - STRLEN(REPLACE(?templateMotifCigarP06961MF_01261116, CONCAT('^(?:-*[^-]){', STR(((23 - ?templateMotifSequenceMatchBeginPositionP06961117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06961MF_01261118, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261118) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06961MF_01261118, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261118) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) .
BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_01261119) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch135 faldo:location ?templateMotifSequenceMatchRegionP06961136 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06961138 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06961MF_01261131 .
?templateMotifSequenceMatchRegionP06961136 faldo:begin ?templateMotifSequenceMatchBeginP06961137 .
?templateMotifSequenceMatchBeginP06961137 faldo:position ?templateMotifSequenceMatchBeginPositionP06961132 ;
faldo:reference isoform:P06961-1 .
?templateMotifSequenceProfileAlignmentOperationP06961138 edam:has_input signature:MF_01261 ;
rdf:type edam:operation_0300 .
?targetMotifMatch139 faldo:location ?targetMotifMatchRegionMatch140 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01261142 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06961MF_01261133 .
?targetMotifMatchRegionMatch140 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01261141 .
?targetMotifMatchRegionMatchBeginMF_01261141 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01261134 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01261142 edam:has_input signature:MF_01261 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06961MF_01261131, 1, (STRLEN(?templateMotifCigarP06961MF_01261131) - STRLEN(REPLACE(?templateMotifCigarP06961MF_01261131, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionP06961132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06961MF_01261133, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261133) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06961MF_01261133, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261133) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) .
BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_01261134) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t145) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch150 faldo:location ?templateMotifSequenceMatchRegionP06961151 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06961153 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06961MF_01261146 .
?templateMotifSequenceMatchRegionP06961151 faldo:begin ?templateMotifSequenceMatchBeginP06961152 .
?templateMotifSequenceMatchBeginP06961152 faldo:position ?templateMotifSequenceMatchBeginPositionP06961147 ;
faldo:reference isoform:P06961-1 .
?templateMotifSequenceProfileAlignmentOperationP06961153 edam:has_input signature:MF_01261 ;
rdf:type edam:operation_0300 .
?targetMotifMatch154 faldo:location ?targetMotifMatchRegionMatch155 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01261157 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06961MF_01261148 .
?targetMotifMatchRegionMatch155 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01261156 .
?targetMotifMatchRegionMatchBeginMF_01261156 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01261149 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01261157 edam:has_input signature:MF_01261 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06961MF_01261146, 1, (STRLEN(?templateMotifCigarP06961MF_01261146) - STRLEN(REPLACE(?templateMotifCigarP06961MF_01261146, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionP06961147) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06961MF_01261148, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261148) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06961MF_01261148, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261148) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) .
BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_01261149) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t160) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch165 faldo:location ?templateMotifSequenceMatchRegionP06961166 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06961168 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06961MF_01261161 .
?templateMotifSequenceMatchRegionP06961166 faldo:begin ?templateMotifSequenceMatchBeginP06961167 .
?templateMotifSequenceMatchBeginP06961167 faldo:position ?templateMotifSequenceMatchBeginPositionP06961162 ;
faldo:reference isoform:P06961-1 .
?templateMotifSequenceProfileAlignmentOperationP06961168 edam:has_input signature:MF_01261 ;
rdf:type edam:operation_0300 .
?targetMotifMatch169 faldo:location ?targetMotifMatchRegionMatch170 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01261172 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06961MF_01261163 .
?targetMotifMatchRegionMatch170 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01261171 .
?targetMotifMatchRegionMatchBeginMF_01261171 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01261164 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01261172 edam:has_input signature:MF_01261 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06961MF_01261161, 1, (STRLEN(?templateMotifCigarP06961MF_01261161) - STRLEN(REPLACE(?templateMotifCigarP06961MF_01261161, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP06961162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06961MF_01261163, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261163) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06961MF_01261163, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261163) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) .
BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_01261164) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t175) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch180 faldo:location ?templateMotifSequenceMatchRegionP06961181 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06961183 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06961MF_01261176 .
?templateMotifSequenceMatchRegionP06961181 faldo:begin ?templateMotifSequenceMatchBeginP06961182 .
?templateMotifSequenceMatchBeginP06961182 faldo:position ?templateMotifSequenceMatchBeginPositionP06961177 ;
faldo:reference isoform:P06961-1 .
?templateMotifSequenceProfileAlignmentOperationP06961183 edam:has_input signature:MF_01261 ;
rdf:type edam:operation_0300 .
?targetMotifMatch184 faldo:location ?targetMotifMatchRegionMatch185 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01261187 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06961MF_01261178 .
?targetMotifMatchRegionMatch185 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01261186 .
?targetMotifMatchRegionMatchBeginMF_01261186 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01261179 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01261187 edam:has_input signature:MF_01261 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06961MF_01261176, 1, (STRLEN(?templateMotifCigarP06961MF_01261176) - STRLEN(REPLACE(?templateMotifCigarP06961MF_01261176, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP06961177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06961MF_01261178, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261178) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06961MF_01261178, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261178) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) .
BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_01261179) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs1t190) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch195 faldo:location ?templateMotifSequenceMatchRegionP06961196 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06961198 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06961MF_01261191 .
?templateMotifSequenceMatchRegionP06961196 faldo:begin ?templateMotifSequenceMatchBeginP06961197 .
?templateMotifSequenceMatchBeginP06961197 faldo:position ?templateMotifSequenceMatchBeginPositionP06961192 ;
faldo:reference isoform:P06961-1 .
?templateMotifSequenceProfileAlignmentOperationP06961198 edam:has_input signature:MF_01261 ;
rdf:type edam:operation_0300 .
?targetMotifMatch199 faldo:location ?targetMotifMatchRegionMatch200 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01261202 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06961MF_01261193 .
?targetMotifMatchRegionMatch200 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01261201 .
?targetMotifMatchRegionMatchBeginMF_01261201 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01261194 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01261202 edam:has_input signature:MF_01261 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06961MF_01261191, 1, (STRLEN(?templateMotifCigarP06961MF_01261191) - STRLEN(REPLACE(?templateMotifCigarP06961MF_01261191, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionP06961192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1203) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06961MF_01261193, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261193) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06961MF_01261193, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261193) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), '')))), '[^-]', ''))) AS ?step2204) .
BIND(((?step2204 + ?targetMotifMatchRegionMatchBeginPositionMF_01261194) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs1t205) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch210 faldo:location ?templateMotifSequenceMatchRegionP06961211 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06961213 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06961MF_01261206 .
?templateMotifSequenceMatchRegionP06961211 faldo:begin ?templateMotifSequenceMatchBeginP06961212 .
?templateMotifSequenceMatchBeginP06961212 faldo:position ?templateMotifSequenceMatchBeginPositionP06961207 ;
faldo:reference isoform:P06961-1 .
?templateMotifSequenceProfileAlignmentOperationP06961213 edam:has_input signature:MF_01261 ;
rdf:type edam:operation_0300 .
?targetMotifMatch214 faldo:location ?targetMotifMatchRegionMatch215 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01261217 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06961MF_01261208 .
?targetMotifMatchRegionMatch215 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01261216 .
?targetMotifMatchRegionMatchBeginMF_01261216 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01261209 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01261217 edam:has_input signature:MF_01261 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06961MF_01261206, 1, (STRLEN(?templateMotifCigarP06961MF_01261206) - STRLEN(REPLACE(?templateMotifCigarP06961MF_01261206, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionP06961207) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1218) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06961MF_01261208, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261208) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06961MF_01261208, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261208) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), '')))), '[^-]', ''))) AS ?step2219) .
BIND(((?step2219 + ?targetMotifMatchRegionMatchBeginPositionMF_01261209) - 1) AS ?thisPositionOn71) .
BIND(?thisPositionOn71 AS ?thisPositionOn72) .
BIND(?this AS ?pfs1t220) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse69) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch225 faldo:location ?templateMotifSequenceMatchRegionP06961226 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06961228 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06961MF_01261221 .
?templateMotifSequenceMatchRegionP06961226 faldo:begin ?templateMotifSequenceMatchBeginP06961227 .
?templateMotifSequenceMatchBeginP06961227 faldo:position ?templateMotifSequenceMatchBeginPositionP06961222 ;
faldo:reference isoform:P06961-1 .
?templateMotifSequenceProfileAlignmentOperationP06961228 edam:has_input signature:MF_01261 ;
rdf:type edam:operation_0300 .
?targetMotifMatch229 faldo:location ?targetMotifMatchRegionMatch230 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01261232 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06961MF_01261223 .
?targetMotifMatchRegionMatch230 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01261231 .
?targetMotifMatchRegionMatchBeginMF_01261231 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01261224 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01261232 edam:has_input signature:MF_01261 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06961MF_01261221, 1, (STRLEN(?templateMotifCigarP06961MF_01261221) - STRLEN(REPLACE(?templateMotifCigarP06961MF_01261221, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionP06961222) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1233) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06961MF_01261223, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261223) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06961MF_01261223, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261223) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), '')))), '[^-]', ''))) AS ?step2234) .
BIND(((?step2234 + ?targetMotifMatchRegionMatchBeginPositionMF_01261224) - 1) AS ?thisPositionOn78) .
BIND(?thisPositionOn78 AS ?thisPositionOn79) .
BIND(?this AS ?pfs1t235) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse76) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a74')) AS ?annotation74) .
BIND(?this AS ?pfs73) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch240 faldo:location ?templateMotifSequenceMatchRegionP06961241 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06961243 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06961MF_01261236 .
?templateMotifSequenceMatchRegionP06961241 faldo:begin ?templateMotifSequenceMatchBeginP06961242 .
?templateMotifSequenceMatchBeginP06961242 faldo:position ?templateMotifSequenceMatchBeginPositionP06961237 ;
faldo:reference isoform:P06961-1 .
?templateMotifSequenceProfileAlignmentOperationP06961243 edam:has_input signature:MF_01261 ;
rdf:type edam:operation_0300 .
?targetMotifMatch244 faldo:location ?targetMotifMatchRegionMatch245 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01261247 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06961MF_01261238 .
?targetMotifMatchRegionMatch245 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01261246 .
?targetMotifMatchRegionMatchBeginMF_01261246 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01261239 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01261247 edam:has_input signature:MF_01261 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06961MF_01261236, 1, (STRLEN(?templateMotifCigarP06961MF_01261236) - STRLEN(REPLACE(?templateMotifCigarP06961MF_01261236, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionP06961237) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1248) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06961MF_01261238, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261238) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06961MF_01261238, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261238) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), '')))), '[^-]', ''))) AS ?step2249) .
BIND(((?step2249 + ?targetMotifMatchRegionMatchBeginPositionMF_01261239) - 1) AS ?thisPositionOn85) .
BIND(?thisPositionOn85 AS ?thisPositionOn86) .
BIND(?this AS ?pfs1t250) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse83) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn85, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a81')) AS ?annotation81) .
BIND(?this AS ?pfs80) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch255 faldo:location ?templateMotifSequenceMatchRegionP06961256 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06961258 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06961MF_01261251 .
?templateMotifSequenceMatchRegionP06961256 faldo:begin ?templateMotifSequenceMatchBeginP06961257 .
?templateMotifSequenceMatchBeginP06961257 faldo:position ?templateMotifSequenceMatchBeginPositionP06961252 ;
faldo:reference isoform:P06961-1 .
?templateMotifSequenceProfileAlignmentOperationP06961258 edam:has_input signature:MF_01261 ;
rdf:type edam:operation_0300 .
?targetMotifMatch259 faldo:location ?targetMotifMatchRegionMatch260 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01261262 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06961MF_01261253 .
?targetMotifMatchRegionMatch260 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01261261 .
?targetMotifMatchRegionMatchBeginMF_01261261 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01261254 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01261262 edam:has_input signature:MF_01261 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06961MF_01261251, 1, (STRLEN(?templateMotifCigarP06961MF_01261251) - STRLEN(REPLACE(?templateMotifCigarP06961MF_01261251, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP06961252) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1263) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06961MF_01261253, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261253) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06961MF_01261253, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261253) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), '')))), '[^-]', ''))) AS ?step2264) .
BIND(((?step2264 + ?targetMotifMatchRegionMatchBeginPositionMF_01261254) - 1) AS ?thisPositionOn92) .
BIND(?thisPositionOn92 AS ?thisPositionOn93) .
BIND(?this AS ?pfs1t265) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse90) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a88')) AS ?annotation88) .
BIND(?this AS ?pfs87) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch270 faldo:location ?templateMotifSequenceMatchRegionP06961271 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06961273 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06961MF_01261266 .
?templateMotifSequenceMatchRegionP06961271 faldo:begin ?templateMotifSequenceMatchBeginP06961272 .
?templateMotifSequenceMatchBeginP06961272 faldo:position ?templateMotifSequenceMatchBeginPositionP06961267 ;
faldo:reference isoform:P06961-1 .
?templateMotifSequenceProfileAlignmentOperationP06961273 edam:has_input signature:MF_01261 ;
rdf:type edam:operation_0300 .
?targetMotifMatch274 faldo:location ?targetMotifMatchRegionMatch275 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01261277 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06961MF_01261268 .
?targetMotifMatchRegionMatch275 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01261276 .
?targetMotifMatchRegionMatchBeginMF_01261276 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01261269 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01261277 edam:has_input signature:MF_01261 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06961MF_01261266, 1, (STRLEN(?templateMotifCigarP06961MF_01261266) - STRLEN(REPLACE(?templateMotifCigarP06961MF_01261266, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP06961267) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1278) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06961MF_01261268, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261268) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06961MF_01261268, 1, (STRLEN(?targetMotifMatchCigarP06961MF_01261268) - STRLEN(REPLACE(?targetMotifMatchCigarP06961MF_01261268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), '')))), '[^-]', ''))) AS ?step2279) .
BIND(((?step2279 + ?targetMotifMatchRegionMatchBeginPositionMF_01261269) - 1) AS ?thisPositionOn99) .
BIND(?thisPositionOn99 AS ?thisPositionOn100) .
BIND(?this AS ?pfs1t280) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfsb96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfse97) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn99, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01261a95')) AS ?annotation95) .
BIND(?this AS ?pfs94) .
}
}
"xsd:string |
