| http://purl.uniprot.org/unirules/MF_01447#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:524522 up:source unirule:MF_01447 .
_:524523 up:ecName '2.3.1.234' ;
up:fullName 'tRNA N6-adenosine threonylcarbamoyltransferase' ;
rdf:type up:Structured_Name .
_:524524 up:fullName 'tRNA threonylcarbamoyladenosine biosynthesis protein Kae1' ;
rdf:type up:Structured_Name .
_:524525 up:fullName 't(6)A37 threonylcarbamoyladenosine biosynthesis protein Kae1' ;
rdf:type up:Structured_Name .
_:524526 up:source unirule:MF_01447 .
_:524527 up:ecName '2.7.11.1' ;
up:fullName 'Serine/threonine-protein kinase Bud32' ;
rdf:type up:Structured_Name .
_:524528 up:source unirule:MF_01447 .
_:524529 up:source unirule:MF_01447 .
_:524530 up:source unirule:MF_01447 .
_:524531 up:source unirule:MF_01447 .
_:524532 up:source unirule:MF_01447 .
_:524533 up:source unirule:MF_01447 .
_:524534 up:source unirule:MF_01447 .
_:524535 up:source unirule:MF_01447 .
_:524536 up:source unirule:MF_01447 .
_:524537 up:source unirule:MF_01447 .
_:524538 up:source unirule:MF_01447 .
_:524539 up:source unirule:MF_01447 .
_:524540 up:source unirule:MF_01447 .
_:524541 up:source unirule:MF_01447 .
_:524542 up:source unirule:MF_01447 .
_:524543 up:source unirule:MF_01447 .
_:524544 up:source unirule:MF_01447 .
_:524545 up:source unirule:MF_01447 .
_:524546 up:source unirule:MF_01447 .
_:524547 up:source unirule:MF_01447 .
_:524548 up:source unirule:MF_01447 .
_:524549 up:source unirule:MF_01447 .
_:524550 up:source unirule:MF_01447 .
_:524551 up:source unirule:MF_01447 .
_:524552 up:source unirule:MF_01447 .
_:524553 up:source unirule:MF_01447 .
_:524554 up:source unirule:MF_01447 .
_:524555 up:source unirule:MF_01447 .
_:524556 up:source unirule:MF_01447 .
_:524557 up:source unirule:MF_01447 .
_:524558 up:source unirule:MF_01447 .
_:524559 up:source unirule:MF_01447 .
_:524560 up:source unirule:MF_01447 .
_:524561 up:source unirule:MF_01447 .
_:524562 up:source unirule:MF_01447 .
_:524563 up:source unirule:MF_01447 .
_:524564 up:source unirule:MF_01447 .
_:524565 up:source unirule:MF_01447 .
_:524566 up:source unirule:MF_01447 .
_:524567 up:source unirule:MF_01447 .
_:524568 up:source unirule:MF_01447 .
?this up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation10 ,
?annotation11 ,
?annotation12 ,
?annotation14 ,
?annotation15 ;
up:classifiedWith GO:0002949 ,
GO:0004712 ,
GO:0005506 ,
GO:0005524 ,
GO:0005737 ,
GO:0016747 ,
keyword:12 ,
keyword:408 ,
keyword:418 ,
keyword:479 ,
keyword:511 ,
keyword:547 ,
keyword:67 ,
keyword:723 ,
keyword:808 ,
keyword:819 ,
keyword:963 ;
up:domain ?namedpart1 ,
?namedpart2 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein' ;
rdf:type up:Structured_Name .
?namedpart1 up:alternativeName _:524524 ,
_:524525 ;
up:recommendedName _:524523 .
?namedpart2 up:recommendedName _:524527 .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is a component of the KEOPS complex that is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. The Kae1 domain likely plays a direct catalytic role in this reaction. The Bud32 domain probably displays kinase activity that regulates Kae1 function.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:activity ?activity9 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity9 up:catalyticActivity ;
up:enzymeClass .
?annotation10 up:cofactor chebi:29033 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 Fe(2+) ion per subunit.' .
?annotation11 a up:Subunit_Annotation ;
rdfs:comment 'Component of the KEOPS complex that consists of Kae1, Bud32, Cgi121 and Pcc1; the whole complex dimerizes.' .
?annotation12 a up:Subcellular_Location_Annotation .
?annotation12li13 up:cellularComponent .
?annotation14 a up:Similarity_Annotation ;
rdfs:comment 'In the N-terminal section; belongs to the KAE1 / TsaD family.' .
?annotation15 a up:Similarity_Annotation ;
rdfs:comment 'In the C-terminal section; belongs to the protein kinase superfamily. Tyr protein kinase family. BUD32 subfamily.' .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Domain_Extent_Annotation ;
rdfs:comment 'Protein kinase' .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:30616 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Kae1' .
?pfsb31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor; for kinase activity' .
?pfsb37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf chebi:73682 .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
up:ligand ?ligand52 ;
rdf:type up:Binding_Site_Annotation .
?pfsb50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand52 rdfs:subClassOf chebi:24875 .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation .
?pfsb57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf chebi:24875 .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
up:ligand ?ligand66 ;
rdf:type up:Binding_Site_Annotation .
?pfsb64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?ligand66 rdfs:subClassOf chebi:24875 .
?pfs69 up:annotation ?annotation70 .
?annotation70 faldo:begin ?pfsb71 ;
faldo:end ?pfse72 ;
up:ligand ?ligand73 ;
rdf:type up:Binding_Site_Annotation .
?pfsb71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?pfse72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?ligand73 rdfs:subClassOf chebi:24875 .
?pfs76 up:annotation ?annotation77 .
?annotation77 faldo:begin ?pfsb78 ;
faldo:end ?pfse79 ;
up:ligand ?ligand80 ;
rdf:type up:Binding_Site_Annotation .
?pfsb78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?pfse79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?ligand80 rdfs:subClassOf chebi:73682 .
?pfs83 up:annotation ?annotation84 .
?annotation84 faldo:begin ?pfsb85 ;
faldo:end ?pfse86 ;
up:ligand ?ligand87 ;
rdf:type up:Binding_Site_Annotation .
?pfsb85 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?pfse86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?ligand87 rdfs:subClassOf chebi:73682 .
?pfs90 up:annotation ?annotation91 .
?annotation91 faldo:begin ?pfsb92 ;
faldo:end ?pfse93 ;
up:ligand ?ligand94 ;
rdf:type up:Binding_Site_Annotation .
?pfsb92 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?pfse93 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?ligand94 rdfs:subClassOf chebi:73682 .
?pfs97 up:annotation ?annotation98 .
?annotation98 faldo:begin ?pfsb99 ;
faldo:end ?pfse100 ;
up:ligand ?ligand101 ;
rdf:type up:Binding_Site_Annotation .
?pfsb99 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?pfse100 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?ligand101 rdfs:subClassOf chebi:73682 .
?pfs104 up:annotation ?annotation105 .
?annotation105 faldo:begin ?pfsb106 ;
faldo:end ?pfse107 ;
up:ligand ?ligand108 ;
rdf:type up:Binding_Site_Annotation .
?pfsb106 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?pfse107 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?ligand108 rdfs:subClassOf chebi:30616 .
_:524569 a rdf:Statement ;
up:attribution _:524522 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:524570 a rdf:Statement ;
up:attribution _:524526 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart1 .
_:524571 a rdf:Statement ;
up:attribution _:524528 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart2 .
_:524572 a rdf:Statement ;
up:attribution _:524529 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:524573 a rdf:Statement ;
up:attribution _:524530 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:524574 a rdf:Statement ;
up:attribution _:524531 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:524575 a rdf:Statement ;
up:attribution _:524532 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:524576 a rdf:Statement ;
up:attribution _:524533 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:524577 a rdf:Statement ;
up:attribution _:524534 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:524578 a rdf:Statement ;
up:attribution _:524535 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:524579 a rdf:Statement ;
up:attribution _:524536 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:524580 a rdf:Statement ;
up:attribution _:524537 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:524581 a rdf:Statement ;
up:attribution _:524538 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:12 .
_:524582 a rdf:Statement ;
up:attribution _:524539 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:524583 a rdf:Statement ;
up:attribution _:524540 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:524584 a rdf:Statement ;
up:attribution _:524541 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:524585 a rdf:Statement ;
up:attribution _:524542 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:524586 a rdf:Statement ;
up:attribution _:524543 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:723 .
_:524587 a rdf:Statement ;
up:attribution _:524544 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:524588 a rdf:Statement ;
up:attribution _:524545 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:524589 a rdf:Statement ;
up:attribution _:524546 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:524590 a rdf:Statement ;
up:attribution _:524547 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:524591 a rdf:Statement ;
up:attribution _:524548 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:511 .
_:524592 a rdf:Statement ;
up:attribution _:524549 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005506 .
_:524593 a rdf:Statement ;
up:attribution _:524550 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:524594 a rdf:Statement ;
up:attribution _:524551 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004712 .
_:524595 a rdf:Statement ;
up:attribution _:524552 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016747 .
_:524596 a rdf:Statement ;
up:attribution _:524553 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0002949 .
_:524597 a rdf:Statement ;
up:attribution _:524554 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:524598 a rdf:Statement ;
up:source unirule:MF_01447 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:524599 a rdf:Statement ;
up:attribution _:524555 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:524600 a rdf:Statement ;
up:source unirule:MF_01447 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:524601 a rdf:Statement ;
up:attribution _:524556 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:524602 a rdf:Statement ;
up:source unirule:MF_01447 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:524603 a rdf:Statement ;
up:attribution _:524557 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:524604 a rdf:Statement ;
up:source unirule:MF_01447 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:524605 a rdf:Statement ;
up:attribution _:524558 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:524606 a rdf:Statement ;
up:source unirule:MF_01447 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:524607 a rdf:Statement ;
up:attribution _:524559 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:524608 a rdf:Statement ;
up:source unirule:MF_01447 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:524609 a rdf:Statement ;
up:attribution _:524560 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:524610 a rdf:Statement ;
up:source unirule:MF_01447 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:524611 a rdf:Statement ;
up:attribution _:524561 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:524612 a rdf:Statement ;
up:source unirule:MF_01447 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:524613 a rdf:Statement ;
up:attribution _:524562 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:524614 a rdf:Statement ;
up:source unirule:MF_01447 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:524615 a rdf:Statement ;
up:attribution _:524563 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:524616 a rdf:Statement ;
up:source unirule:MF_01447 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:524617 a rdf:Statement ;
up:attribution _:524564 ;
rdf:subject ?pfs76 ;
rdf:predicate up:annotation ;
rdf:object ?annotation77 .
_:524618 a rdf:Statement ;
up:source unirule:MF_01447 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:524619 a rdf:Statement ;
up:attribution _:524565 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:524620 a rdf:Statement ;
up:source unirule:MF_01447 ;
rdf:subject ?pfs90 ;
rdf:predicate up:annotation ;
rdf:object ?annotation91 .
_:524621 a rdf:Statement ;
up:attribution _:524566 ;
rdf:subject ?pfs90 ;
rdf:predicate up:annotation ;
rdf:object ?annotation91 .
_:524622 a rdf:Statement ;
up:source unirule:MF_01447 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:524623 a rdf:Statement ;
up:attribution _:524567 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:524624 a rdf:Statement ;
up:source unirule:MF_01447 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:524625 a rdf:Statement ;
up:attribution _:524568 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01447
#Rule MF_01447 Created by:? on:2007-08-13 Modified by:Catherine Rivoire on:2024-10-08
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01447 .
?thisOrganism rdfs:subClassOf+ taxon:3366610 .
BIND(URI(CONCAT(STR(?this), '#MF_01447a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a1')) AS ?namedpart1) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a2')) AS ?namedpart2) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a14')) AS ?annotation14) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a15')) AS ?annotation15) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch115 faldo:location ?templateMotifSequenceMatchRegionQ58530116 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ58530118 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58530MF_01447111 .
?templateMotifSequenceMatchRegionQ58530116 faldo:begin ?templateMotifSequenceMatchBeginQ58530117 .
?templateMotifSequenceMatchBeginQ58530117 faldo:position ?templateMotifSequenceMatchBeginPositionQ58530112 ;
faldo:reference isoform:Q58530-1 .
?templateMotifSequenceProfileAlignmentOperationQ58530118 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
?targetMotifMatch119 faldo:location ?targetMotifMatchRegionMatch120 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01447122 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58530MF_01447113 .
?targetMotifMatchRegionMatch120 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01447121 .
?targetMotifMatchRegionMatchBeginMF_01447121 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01447114 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01447122 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58530MF_01447111, 1, (STRLEN(?templateMotifCigarQ58530MF_01447111) - STRLEN(REPLACE(?templateMotifCigarQ58530MF_01447111, CONCAT('^(?:-*[^-]){', STR(((333 - ?templateMotifSequenceMatchBeginPositionQ58530112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58530MF_01447113, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447113) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58530MF_01447113, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447113) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) .
BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_01447114) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER ((BOUND(?thisPositionOn20) && BOUND(?thisPositionOn21))) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch130 faldo:location ?templateMotifSequenceMatchRegionQ58530131 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ58530133 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58530MF_01447126 .
?templateMotifSequenceMatchRegionQ58530131 faldo:begin ?templateMotifSequenceMatchBeginQ58530132 .
?templateMotifSequenceMatchBeginQ58530132 faldo:position ?templateMotifSequenceMatchBeginPositionQ58530127 ;
faldo:reference isoform:Q58530-1 .
?templateMotifSequenceProfileAlignmentOperationQ58530133 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
?targetMotifMatch134 faldo:location ?targetMotifMatchRegionMatch135 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01447137 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58530MF_01447128 .
?targetMotifMatchRegionMatch135 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01447136 .
?targetMotifMatchRegionMatchBeginMF_01447136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01447129 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01447137 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58530MF_01447126, 1, (STRLEN(?templateMotifCigarQ58530MF_01447126) - STRLEN(REPLACE(?templateMotifCigarQ58530MF_01447126, CONCAT('^(?:-*[^-]){', STR(((339 - ?templateMotifSequenceMatchBeginPositionQ58530127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58530MF_01447128, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447128) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58530MF_01447128, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447128) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) .
BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_01447129) - 1) AS ?thisPositionOn27) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58530MF_01447126, 1, (STRLEN(?templateMotifCigarQ58530MF_01447126) - STRLEN(REPLACE(?templateMotifCigarQ58530MF_01447126, CONCAT('^(?:-*[^-]){', STR(((347 - ?templateMotifSequenceMatchBeginPositionQ58530127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58530MF_01447128, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447128) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58530MF_01447128, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447128) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_01447129) - 1) AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((BOUND(?thisPositionOn27) && BOUND(?thisPositionOn28))) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch147 faldo:location ?templateMotifSequenceMatchRegionQ58530148 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ58530150 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58530MF_01447143 .
?templateMotifSequenceMatchRegionQ58530148 faldo:begin ?templateMotifSequenceMatchBeginQ58530149 .
?templateMotifSequenceMatchBeginQ58530149 faldo:position ?templateMotifSequenceMatchBeginPositionQ58530144 ;
faldo:reference isoform:Q58530-1 .
?templateMotifSequenceProfileAlignmentOperationQ58530150 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
?targetMotifMatch151 faldo:location ?targetMotifMatchRegionMatch152 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01447154 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58530MF_01447145 .
?targetMotifMatchRegionMatch152 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01447153 .
?targetMotifMatchRegionMatchBeginMF_01447153 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01447146 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01447154 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn33) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58530MF_01447143, 1, (STRLEN(?templateMotifCigarQ58530MF_01447143) - STRLEN(REPLACE(?templateMotifCigarQ58530MF_01447143, CONCAT('^(?:-*[^-]){', STR(((323 - ?templateMotifSequenceMatchBeginPositionQ58530144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58530MF_01447145, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447145) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58530MF_01447145, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447145) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) .
BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_01447146) - 1) AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t157) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) .
FILTER ((BOUND(?thisPositionOn33) && BOUND(?thisPositionOn34))) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch162 faldo:location ?templateMotifSequenceMatchRegionQ58530163 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ58530165 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58530MF_01447158 .
?templateMotifSequenceMatchRegionQ58530163 faldo:begin ?templateMotifSequenceMatchBeginQ58530164 .
?templateMotifSequenceMatchBeginQ58530164 faldo:position ?templateMotifSequenceMatchBeginPositionQ58530159 ;
faldo:reference isoform:Q58530-1 .
?templateMotifSequenceProfileAlignmentOperationQ58530165 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
?targetMotifMatch166 faldo:location ?targetMotifMatchRegionMatch167 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01447169 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58530MF_01447160 .
?targetMotifMatchRegionMatch167 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01447168 .
?targetMotifMatchRegionMatchBeginMF_01447168 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01447161 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01447169 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58530MF_01447158, 1, (STRLEN(?templateMotifCigarQ58530MF_01447158) - STRLEN(REPLACE(?templateMotifCigarQ58530MF_01447158, CONCAT('^(?:-*[^-]){', STR(((451 - ?templateMotifSequenceMatchBeginPositionQ58530159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58530MF_01447160, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447160) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58530MF_01447160, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447160) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) .
BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_01447161) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t172) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch177 faldo:location ?templateMotifSequenceMatchRegionQ58530178 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ58530180 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58530MF_01447173 .
?templateMotifSequenceMatchRegionQ58530178 faldo:begin ?templateMotifSequenceMatchBeginQ58530179 .
?templateMotifSequenceMatchBeginQ58530179 faldo:position ?templateMotifSequenceMatchBeginPositionQ58530174 ;
faldo:reference isoform:Q58530-1 .
?templateMotifSequenceProfileAlignmentOperationQ58530180 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
?targetMotifMatch181 faldo:location ?targetMotifMatchRegionMatch182 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01447184 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58530MF_01447175 .
?targetMotifMatchRegionMatch182 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01447183 .
?targetMotifMatchRegionMatchBeginMF_01447183 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01447176 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01447184 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58530MF_01447173, 1, (STRLEN(?templateMotifCigarQ58530MF_01447173) - STRLEN(REPLACE(?templateMotifCigarQ58530MF_01447173, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionQ58530174) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58530MF_01447175, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447175) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58530MF_01447175, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447175) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) .
BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_01447176) - 1) AS ?thisPositionOn46) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58530MF_01447173, 1, (STRLEN(?templateMotifCigarQ58530MF_01447173) - STRLEN(REPLACE(?templateMotifCigarQ58530MF_01447173, CONCAT('^(?:-*[^-]){', STR(((131 - ?templateMotifSequenceMatchBeginPositionQ58530174) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58530MF_01447175, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447175) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58530MF_01447175, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447175) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) .
BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_01447176) - 1) AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t189) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) .
FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]SG[GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn46, (?thisPositionOn47 - ?thisPositionOn46)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch194 faldo:location ?templateMotifSequenceMatchRegionQ58530195 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ58530197 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58530MF_01447190 .
?templateMotifSequenceMatchRegionQ58530195 faldo:begin ?templateMotifSequenceMatchBeginQ58530196 .
?templateMotifSequenceMatchBeginQ58530196 faldo:position ?templateMotifSequenceMatchBeginPositionQ58530191 ;
faldo:reference isoform:Q58530-1 .
?templateMotifSequenceProfileAlignmentOperationQ58530197 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
?targetMotifMatch198 faldo:location ?targetMotifMatchRegionMatch199 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01447201 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58530MF_01447192 .
?targetMotifMatchRegionMatch199 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01447200 .
?targetMotifMatchRegionMatchBeginMF_01447200 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01447193 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01447201 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58530MF_01447190, 1, (STRLEN(?templateMotifCigarQ58530MF_01447190) - STRLEN(REPLACE(?templateMotifCigarQ58530MF_01447190, CONCAT('^(?:-*[^-]){', STR(((106 - ?templateMotifSequenceMatchBeginPositionQ58530191) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58530MF_01447192, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447192) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58530MF_01447192, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447192) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447192, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_01447193) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionQ58530210 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ58530212 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58530MF_01447205 .
?templateMotifSequenceMatchRegionQ58530210 faldo:begin ?templateMotifSequenceMatchBeginQ58530211 .
?templateMotifSequenceMatchBeginQ58530211 faldo:position ?templateMotifSequenceMatchBeginPositionQ58530206 ;
faldo:reference isoform:Q58530-1 .
?templateMotifSequenceProfileAlignmentOperationQ58530212 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01447216 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58530MF_01447207 .
?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01447215 .
?targetMotifMatchRegionMatchBeginMF_01447215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01447208 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01447216 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58530MF_01447205, 1, (STRLEN(?templateMotifCigarQ58530MF_01447205) - STRLEN(REPLACE(?templateMotifCigarQ58530MF_01447205, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionQ58530206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58530MF_01447207, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447207) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58530MF_01447207, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447207) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) .
BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_01447208) - 1) AS ?thisPositionOn60) .
BIND(?thisPositionOn60 AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t219) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionQ58530225 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ58530227 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58530MF_01447220 .
?templateMotifSequenceMatchRegionQ58530225 faldo:begin ?templateMotifSequenceMatchBeginQ58530226 .
?templateMotifSequenceMatchBeginQ58530226 faldo:position ?templateMotifSequenceMatchBeginPositionQ58530221 ;
faldo:reference isoform:Q58530-1 .
?templateMotifSequenceProfileAlignmentOperationQ58530227 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01447231 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58530MF_01447222 .
?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01447230 .
?targetMotifMatchRegionMatchBeginMF_01447230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01447223 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01447231 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58530MF_01447220, 1, (STRLEN(?templateMotifCigarQ58530MF_01447220) - STRLEN(REPLACE(?templateMotifCigarQ58530MF_01447220, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionQ58530221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58530MF_01447222, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447222) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58530MF_01447222, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447222) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) .
BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_01447223) - 1) AS ?thisPositionOn67) .
BIND(?thisPositionOn67 AS ?thisPositionOn68) .
BIND(?this AS ?pfs1t234) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch239 faldo:location ?templateMotifSequenceMatchRegionQ58530240 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ58530242 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58530MF_01447235 .
?templateMotifSequenceMatchRegionQ58530240 faldo:begin ?templateMotifSequenceMatchBeginQ58530241 .
?templateMotifSequenceMatchBeginQ58530241 faldo:position ?templateMotifSequenceMatchBeginPositionQ58530236 ;
faldo:reference isoform:Q58530-1 .
?templateMotifSequenceProfileAlignmentOperationQ58530242 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
?targetMotifMatch243 faldo:location ?targetMotifMatchRegionMatch244 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01447246 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58530MF_01447237 .
?targetMotifMatchRegionMatch244 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01447245 .
?targetMotifMatchRegionMatchBeginMF_01447245 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01447238 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01447246 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58530MF_01447235, 1, (STRLEN(?templateMotifCigarQ58530MF_01447235) - STRLEN(REPLACE(?templateMotifCigarQ58530MF_01447235, CONCAT('^(?:-*[^-]){', STR(((284 - ?templateMotifSequenceMatchBeginPositionQ58530236) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1247) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58530MF_01447237, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447237) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58530MF_01447237, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447237) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447237, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1247), '}'), '')))), '[^-]', ''))) AS ?step2248) .
BIND(((?step2248 + ?targetMotifMatchRegionMatchBeginPositionMF_01447238) - 1) AS ?thisPositionOn74) .
BIND(?thisPositionOn74 AS ?thisPositionOn75) .
BIND(?this AS ?pfs1t249) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfse72) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn74, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch254 faldo:location ?templateMotifSequenceMatchRegionQ58530255 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ58530257 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58530MF_01447250 .
?templateMotifSequenceMatchRegionQ58530255 faldo:begin ?templateMotifSequenceMatchBeginQ58530256 .
?templateMotifSequenceMatchBeginQ58530256 faldo:position ?templateMotifSequenceMatchBeginPositionQ58530251 ;
faldo:reference isoform:Q58530-1 .
?templateMotifSequenceProfileAlignmentOperationQ58530257 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
?targetMotifMatch258 faldo:location ?targetMotifMatchRegionMatch259 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01447261 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58530MF_01447252 .
?targetMotifMatchRegionMatch259 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01447260 .
?targetMotifMatchRegionMatchBeginMF_01447260 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01447253 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01447261 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58530MF_01447250, 1, (STRLEN(?templateMotifCigarQ58530MF_01447250) - STRLEN(REPLACE(?templateMotifCigarQ58530MF_01447250, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionQ58530251) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1262) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58530MF_01447252, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447252) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58530MF_01447252, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447252) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447252, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1262), '}'), '')))), '[^-]', ''))) AS ?step2263) .
BIND(((?step2263 + ?targetMotifMatchRegionMatchBeginPositionMF_01447253) - 1) AS ?thisPositionOn81) .
BIND(?thisPositionOn81 AS ?thisPositionOn82) .
BIND(?this AS ?pfs1t264) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfsb78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfse79) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn81, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a77')) AS ?annotation77) .
BIND(?this AS ?pfs76) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch269 faldo:location ?templateMotifSequenceMatchRegionQ58530270 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ58530272 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58530MF_01447265 .
?templateMotifSequenceMatchRegionQ58530270 faldo:begin ?templateMotifSequenceMatchBeginQ58530271 .
?templateMotifSequenceMatchBeginQ58530271 faldo:position ?templateMotifSequenceMatchBeginPositionQ58530266 ;
faldo:reference isoform:Q58530-1 .
?templateMotifSequenceProfileAlignmentOperationQ58530272 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
?targetMotifMatch273 faldo:location ?targetMotifMatchRegionMatch274 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01447276 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58530MF_01447267 .
?targetMotifMatchRegionMatch274 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01447275 .
?targetMotifMatchRegionMatchBeginMF_01447275 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01447268 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01447276 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58530MF_01447265, 1, (STRLEN(?templateMotifCigarQ58530MF_01447265) - STRLEN(REPLACE(?templateMotifCigarQ58530MF_01447265, CONCAT('^(?:-*[^-]){', STR(((172 - ?templateMotifSequenceMatchBeginPositionQ58530266) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1277) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58530MF_01447267, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447267) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58530MF_01447267, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447267) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447267, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1277), '}'), '')))), '[^-]', ''))) AS ?step2278) .
BIND(((?step2278 + ?targetMotifMatchRegionMatchBeginPositionMF_01447268) - 1) AS ?thisPositionOn88) .
BIND(?thisPositionOn88 AS ?thisPositionOn89) .
BIND(?this AS ?pfs1t279) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfsb85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfse86) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn88, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a84')) AS ?annotation84) .
BIND(?this AS ?pfs83) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch284 faldo:location ?templateMotifSequenceMatchRegionQ58530285 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ58530287 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58530MF_01447280 .
?templateMotifSequenceMatchRegionQ58530285 faldo:begin ?templateMotifSequenceMatchBeginQ58530286 .
?templateMotifSequenceMatchBeginQ58530286 faldo:position ?templateMotifSequenceMatchBeginPositionQ58530281 ;
faldo:reference isoform:Q58530-1 .
?templateMotifSequenceProfileAlignmentOperationQ58530287 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
?targetMotifMatch288 faldo:location ?targetMotifMatchRegionMatch289 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01447291 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58530MF_01447282 .
?targetMotifMatchRegionMatch289 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01447290 .
?targetMotifMatchRegionMatchBeginMF_01447290 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01447283 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01447291 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58530MF_01447280, 1, (STRLEN(?templateMotifCigarQ58530MF_01447280) - STRLEN(REPLACE(?templateMotifCigarQ58530MF_01447280, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionQ58530281) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1292) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58530MF_01447282, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447282) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58530MF_01447282, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447282) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447282, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), '')))), '[^-]', ''))) AS ?step2293) .
BIND(((?step2293 + ?targetMotifMatchRegionMatchBeginPositionMF_01447283) - 1) AS ?thisPositionOn95) .
BIND(?thisPositionOn95 AS ?thisPositionOn96) .
BIND(?this AS ?pfs1t294) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfsb92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfse93) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn95, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a91')) AS ?annotation91) .
BIND(?this AS ?pfs90) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch299 faldo:location ?templateMotifSequenceMatchRegionQ58530300 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ58530302 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58530MF_01447295 .
?templateMotifSequenceMatchRegionQ58530300 faldo:begin ?templateMotifSequenceMatchBeginQ58530301 .
?templateMotifSequenceMatchBeginQ58530301 faldo:position ?templateMotifSequenceMatchBeginPositionQ58530296 ;
faldo:reference isoform:Q58530-1 .
?templateMotifSequenceProfileAlignmentOperationQ58530302 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
?targetMotifMatch303 faldo:location ?targetMotifMatchRegionMatch304 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01447306 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58530MF_01447297 .
?targetMotifMatchRegionMatch304 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01447305 .
?targetMotifMatchRegionMatchBeginMF_01447305 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01447298 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01447306 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58530MF_01447295, 1, (STRLEN(?templateMotifCigarQ58530MF_01447295) - STRLEN(REPLACE(?templateMotifCigarQ58530MF_01447295, CONCAT('^(?:-*[^-]){', STR(((256 - ?templateMotifSequenceMatchBeginPositionQ58530296) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1307) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58530MF_01447297, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447297) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58530MF_01447297, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447297) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447297, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), '')))), '[^-]', ''))) AS ?step2308) .
BIND(((?step2308 + ?targetMotifMatchRegionMatchBeginPositionMF_01447298) - 1) AS ?thisPositionOn102) .
BIND(?thisPositionOn102 AS ?thisPositionOn103) .
BIND(?this AS ?pfs1t309) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse100) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn102, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a98')) AS ?annotation98) .
BIND(?this AS ?pfs97) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch314 faldo:location ?templateMotifSequenceMatchRegionQ58530315 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ58530317 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ58530MF_01447310 .
?templateMotifSequenceMatchRegionQ58530315 faldo:begin ?templateMotifSequenceMatchBeginQ58530316 .
?templateMotifSequenceMatchBeginQ58530316 faldo:position ?templateMotifSequenceMatchBeginPositionQ58530311 ;
faldo:reference isoform:Q58530-1 .
?templateMotifSequenceProfileAlignmentOperationQ58530317 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
?targetMotifMatch318 faldo:location ?targetMotifMatchRegionMatch319 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01447321 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ58530MF_01447312 .
?targetMotifMatchRegionMatch319 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01447320 .
?targetMotifMatchRegionMatchBeginMF_01447320 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01447313 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01447321 edam:has_input signature:MF_01447 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ58530MF_01447310, 1, (STRLEN(?templateMotifCigarQ58530MF_01447310) - STRLEN(REPLACE(?templateMotifCigarQ58530MF_01447310, CONCAT('^(?:-*[^-]){', STR(((360 - ?templateMotifSequenceMatchBeginPositionQ58530311) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1322) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ58530MF_01447312, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447312) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1322), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ58530MF_01447312, 1, (STRLEN(?targetMotifMatchCigarQ58530MF_01447312) - STRLEN(REPLACE(?targetMotifMatchCigarQ58530MF_01447312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1322), '}'), '')))), '[^-]', ''))) AS ?step2323) .
BIND(((?step2323 + ?targetMotifMatchRegionMatchBeginPositionMF_01447313) - 1) AS ?thisPositionOn109) .
BIND(?thisPositionOn109 AS ?thisPositionOn110) .
BIND(?this AS ?pfs1t324) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfsb106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfse107) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn109, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01447a105')) AS ?annotation105) .
BIND(?this AS ?pfs104) .
}
}
"xsd:string |
