| http://purl.uniprot.org/unirules/MF_01582#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:571781 up:source unirule:MF_01582 .
_:571782 up:source unirule:MF_01582 .
_:571783 up:source unirule:MF_01582 .
_:571784 up:source unirule:MF_01582 .
_:571785 up:source unirule:MF_01582 .
_:571786 up:source unirule:MF_01582 .
_:571787 up:source unirule:MF_01582 .
_:571788 up:source unirule:MF_01582 .
_:571789 up:source unirule:MF_01582 .
_:571790 up:source unirule:MF_01582 .
_:571791 up:source unirule:MF_01582 .
_:571792 up:source unirule:MF_01582 .
_:571793 up:source unirule:MF_01582 .
_:571794 up:source unirule:MF_01582 .
_:571795 up:source unirule:MF_01582 .
_:571796 up:source unirule:MF_01582 .
_:571797 up:source unirule:MF_01582 .
_:571798 up:source unirule:MF_01582 .
_:571799 up:source unirule:MF_01582 .
_:571800 up:source unirule:MF_01582 .
_:571801 up:source unirule:MF_01582 .
_:571802 up:source unirule:MF_01582 .
_:571803 up:source unirule:MF_01582 .
_:571804 up:source unirule:MF_01582 .
_:571805 up:source unirule:MF_01582 .
_:571806 up:source unirule:MF_01582 .
_:571807 up:source unirule:MF_01582 .
_:571808 up:source unirule:MF_01582 .
_:571809 up:source unirule:MF_01582 .
_:571810 up:source unirule:MF_01582 .
_:571811 up:source unirule:MF_01582 .
_:571812 up:source unirule:MF_01582 .
_:571813 up:source unirule:MF_01582 .
_:571814 up:source unirule:MF_01582 .
_:571815 up:source unirule:MF_01582 .
_:571816 up:source unirule:MF_01582 .
_:571817 up:source unirule:MF_01582 .
_:571818 up:source unirule:MF_01582 .
_:571819 up:source unirule:MF_01582 .
_:571820 up:source unirule:MF_01582 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0005886 ,
GO:0006865 ,
GO:0015171 ,
GO:0015293 ,
keyword:1003 ,
keyword:1133 ,
keyword:29 ,
keyword:472 ,
keyword:769 ,
keyword:812 ,
keyword:813 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Serine/threonine transporter SstT' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Na(+)/serine-threonine symporter' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'sstT' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system).' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.' .
?case9 up:classifiedWith keyword:997 .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Periplasmic' .
?pfsb25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Periplasmic' .
?pfsb49 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb55 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb61 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb67 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfs71 up:annotation ?annotation72 .
?annotation72 faldo:begin ?pfsb73 ;
faldo:end ?pfse74 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Periplasmic' .
?pfsb73 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse74 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?pfs77 up:annotation ?annotation78 .
?annotation78 faldo:begin ?pfsb79 ;
faldo:end ?pfse80 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb79 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?pfse80 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfs83 up:annotation ?annotation84 .
?annotation84 faldo:begin ?pfsb85 ;
faldo:end ?pfse86 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb85 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfse86 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?pfs89 up:annotation ?annotation90 .
?annotation90 faldo:begin ?pfsb91 ;
faldo:end ?pfse92 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb91 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?pfse92 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?pfs95 up:annotation ?annotation96 .
?annotation96 faldo:begin ?pfsb97 ;
faldo:end ?pfse98 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Periplasmic' .
?pfsb97 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?pfse98 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?pfs101 up:annotation ?annotation102 .
?annotation102 faldo:begin ?pfsb103 ;
faldo:end ?pfse104 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb103 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?pfse104 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?pfs107 up:annotation ?annotation108 .
?annotation108 faldo:begin ?pfsb109 ;
faldo:end ?pfse110 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb109 faldo:position ?thisPositionOn111 ;
rdf:type faldo:ExactPosition .
?pfse110 faldo:position ?thisPositionOn112 ;
rdf:type faldo:ExactPosition .
?pfs113 up:annotation ?annotation114 .
?annotation114 faldo:begin ?pfsb115 ;
faldo:end ?pfse116 ;
rdf:type up:Initiator_Methionine_Annotation ;
rdfs:comment 'Removed' .
?pfsb115 faldo:position ?thisPositionOn117 ;
rdf:type faldo:ExactPosition .
?pfse116 faldo:position ?thisPositionOn118 ;
rdf:type faldo:ExactPosition .
?sam119 up:classifiedWith keyword:1133 ,
keyword:472 ,
keyword:812 .
?transmembrane120 faldo:begin ?transmembraneb121 ;
faldo:end ?transmembranee122 .
?transmembraneb121 faldo:position ?transmembranebp123 .
?transmembranee122 faldo:position ?transmembraneep124 .
?keyword125 up:range ?transmembrane120 .
?keyword126 up:range ?transmembrane120 .
?keyword127 up:range ?transmembrane120 .
_:571821 a rdf:Statement ;
up:attribution _:571781 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:571822 a rdf:Statement ;
up:attribution _:571782 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:571823 a rdf:Statement ;
up:attribution _:571783 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:571824 a rdf:Statement ;
up:attribution _:571784 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:571825 a rdf:Statement ;
up:attribution _:571785 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:571826 a rdf:Statement ;
up:attribution _:571786 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:571827 a rdf:Statement ;
up:attribution _:571787 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:571828 a rdf:Statement ;
up:attribution _:571788 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:29 .
_:571829 a rdf:Statement ;
up:attribution _:571789 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:571830 a rdf:Statement ;
up:attribution _:571790 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:571831 a rdf:Statement ;
up:attribution _:571791 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:769 .
_:571832 a rdf:Statement ;
up:attribution _:571792 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:571833 a rdf:Statement ;
up:attribution _:571793 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:813 .
_:571834 a rdf:Statement ;
up:attribution _:571794 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:571835 a rdf:Statement ;
up:attribution _:571795 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015171 .
_:571836 a rdf:Statement ;
up:attribution _:571796 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015293 .
_:571837 a rdf:Statement ;
up:attribution _:571797 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006865 .
_:571838 a rdf:Statement ;
up:attribution _:571798 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:571839 a rdf:Statement ;
up:attribution _:571799 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:571840 a rdf:Statement ;
up:source unirule:MF_01582 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:571841 a rdf:Statement ;
up:attribution _:571800 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:571842 a rdf:Statement ;
up:source unirule:MF_01582 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:571843 a rdf:Statement ;
up:attribution _:571801 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:571844 a rdf:Statement ;
up:source unirule:MF_01582 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:571845 a rdf:Statement ;
up:attribution _:571802 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:571846 a rdf:Statement ;
up:source unirule:MF_01582 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:571847 a rdf:Statement ;
up:attribution _:571803 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:571848 a rdf:Statement ;
up:source unirule:MF_01582 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:571849 a rdf:Statement ;
up:attribution _:571804 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:571850 a rdf:Statement ;
up:source unirule:MF_01582 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:571851 a rdf:Statement ;
up:attribution _:571805 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:571852 a rdf:Statement ;
up:source unirule:MF_01582 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:571853 a rdf:Statement ;
up:attribution _:571806 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:571854 a rdf:Statement ;
up:source unirule:MF_01582 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:571855 a rdf:Statement ;
up:attribution _:571807 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:571856 a rdf:Statement ;
up:source unirule:MF_01582 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:571857 a rdf:Statement ;
up:attribution _:571808 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:571858 a rdf:Statement ;
up:source unirule:MF_01582 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:571859 a rdf:Statement ;
up:attribution _:571809 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:571860 a rdf:Statement ;
up:source unirule:MF_01582 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:571861 a rdf:Statement ;
up:attribution _:571810 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:571862 a rdf:Statement ;
up:source unirule:MF_01582 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:571863 a rdf:Statement ;
up:attribution _:571811 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:571864 a rdf:Statement ;
up:source unirule:MF_01582 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:571865 a rdf:Statement ;
up:attribution _:571812 ;
rdf:subject ?pfs83 ;
rdf:predicate up:annotation ;
rdf:object ?annotation84 .
_:571866 a rdf:Statement ;
up:source unirule:MF_01582 ;
rdf:subject ?pfs89 ;
rdf:predicate up:annotation ;
rdf:object ?annotation90 .
_:571867 a rdf:Statement ;
up:attribution _:571813 ;
rdf:subject ?pfs89 ;
rdf:predicate up:annotation ;
rdf:object ?annotation90 .
_:571868 a rdf:Statement ;
up:source unirule:MF_01582 ;
rdf:subject ?pfs95 ;
rdf:predicate up:annotation ;
rdf:object ?annotation96 .
_:571869 a rdf:Statement ;
up:attribution _:571814 ;
rdf:subject ?pfs95 ;
rdf:predicate up:annotation ;
rdf:object ?annotation96 .
_:571870 a rdf:Statement ;
up:source unirule:MF_01582 ;
rdf:subject ?pfs101 ;
rdf:predicate up:annotation ;
rdf:object ?annotation102 .
_:571871 a rdf:Statement ;
up:attribution _:571815 ;
rdf:subject ?pfs101 ;
rdf:predicate up:annotation ;
rdf:object ?annotation102 .
_:571872 a rdf:Statement ;
up:source unirule:MF_01582 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:571873 a rdf:Statement ;
up:attribution _:571816 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:571874 a rdf:Statement ;
up:source unirule:MF_01582 ;
rdf:subject ?pfs113 ;
rdf:predicate up:annotation ;
rdf:object ?annotation114 .
_:571875 a rdf:Statement ;
up:attribution _:571817 ;
rdf:subject ?pfs113 ;
rdf:predicate up:annotation ;
rdf:object ?annotation114 .
_:571876 a rdf:Statement ;
up:attribution _:571818 ;
rdf:subject ?sam119 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:571877 a rdf:Statement ;
up:attribution _:571819 ;
rdf:subject ?sam119 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:571878 a rdf:Statement ;
up:attribution _:571820 ;
rdf:subject ?sam119 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01582
#Rule MF_01582 Created by:? on:2007-10-04 Modified by:Edouard de Castro on:2023-01-26
VALUES ?supertaxon128 {taxon:85004 taxon:1239 taxon:1224}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01582 .
?thisOrganism rdfs:subClassOf+ ?supertaxon128 .
BIND(URI(CONCAT(STR(?this), '#MF_01582a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionP0AGE4135 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AGE4137 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AGE4MF_01582130 .
?templateMotifSequenceMatchRegionP0AGE4135 faldo:begin ?templateMotifSequenceMatchBeginP0AGE4136 .
?templateMotifSequenceMatchBeginP0AGE4136 faldo:position ?templateMotifSequenceMatchBeginPositionP0AGE4131 ;
faldo:reference isoform:P0AGE4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AGE4137 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01582141 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AGE4MF_01582132 .
?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01582140 .
?targetMotifMatchRegionMatchBeginMF_01582140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01582133 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01582141 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon129 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon129 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582130, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582130) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582130, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP0AGE4131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582132, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582132) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582132, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582132) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) .
BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_01582133) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582130, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582130) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582130, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionP0AGE4131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582132, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582132) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582132, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582132) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_01582133) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t146) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) .
FILTER ((BOUND(?thisPositionOn15) && BOUND(?thisPositionOn16))) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch152 faldo:location ?templateMotifSequenceMatchRegionP0AGE4153 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AGE4155 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AGE4MF_01582148 .
?templateMotifSequenceMatchRegionP0AGE4153 faldo:begin ?templateMotifSequenceMatchBeginP0AGE4154 .
?templateMotifSequenceMatchBeginP0AGE4154 faldo:position ?templateMotifSequenceMatchBeginPositionP0AGE4149 ;
faldo:reference isoform:P0AGE4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AGE4155 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
?targetMotifMatch156 faldo:location ?targetMotifMatchRegionMatch157 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01582159 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AGE4MF_01582150 .
?targetMotifMatchRegionMatch157 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01582158 .
?targetMotifMatchRegionMatchBeginMF_01582158 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01582151 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01582159 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon147 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon147 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582148, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582148) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582148, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionP0AGE4149) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582150, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582150) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582150, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582150) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), '')))), '[^-]', ''))) AS ?step2161) .
BIND(((?step2161 + ?targetMotifMatchRegionMatchBeginPositionMF_01582151) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582148, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582148) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582148, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionP0AGE4149) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582150, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582150) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582150, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582150) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) .
BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_01582151) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t164) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER ((BOUND(?thisPositionOn21) && BOUND(?thisPositionOn22))) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch170 faldo:location ?templateMotifSequenceMatchRegionP0AGE4171 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AGE4173 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AGE4MF_01582166 .
?templateMotifSequenceMatchRegionP0AGE4171 faldo:begin ?templateMotifSequenceMatchBeginP0AGE4172 .
?templateMotifSequenceMatchBeginP0AGE4172 faldo:position ?templateMotifSequenceMatchBeginPositionP0AGE4167 ;
faldo:reference isoform:P0AGE4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AGE4173 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
?targetMotifMatch174 faldo:location ?targetMotifMatchRegionMatch175 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01582177 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AGE4MF_01582168 .
?targetMotifMatchRegionMatch175 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01582176 .
?targetMotifMatchRegionMatchBeginMF_01582176 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01582169 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01582177 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon165 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon165 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582166, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582166) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582166, CONCAT('^(?:-*[^-]){', STR(((37 - ?templateMotifSequenceMatchBeginPositionP0AGE4167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582168, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582168) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582168, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582168) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) .
BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_01582169) - 1) AS ?thisPositionOn27) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582166, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582166) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582166, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionP0AGE4167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582168, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582168) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582168, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582168) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) .
BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_01582169) - 1) AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t182) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) .
FILTER ((BOUND(?thisPositionOn27) && BOUND(?thisPositionOn28))) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch188 faldo:location ?templateMotifSequenceMatchRegionP0AGE4189 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AGE4191 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AGE4MF_01582184 .
?templateMotifSequenceMatchRegionP0AGE4189 faldo:begin ?templateMotifSequenceMatchBeginP0AGE4190 .
?templateMotifSequenceMatchBeginP0AGE4190 faldo:position ?templateMotifSequenceMatchBeginPositionP0AGE4185 ;
faldo:reference isoform:P0AGE4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AGE4191 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
?targetMotifMatch192 faldo:location ?targetMotifMatchRegionMatch193 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01582195 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AGE4MF_01582186 .
?targetMotifMatchRegionMatch193 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01582194 .
?targetMotifMatchRegionMatchBeginMF_01582194 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01582187 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01582195 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon183 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon183 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582184, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582184) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582184, CONCAT('^(?:-*[^-]){', STR(((46 - ?templateMotifSequenceMatchBeginPositionP0AGE4185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582186, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582186) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582186, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582186) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), '')))), '[^-]', ''))) AS ?step2197) .
BIND(((?step2197 + ?targetMotifMatchRegionMatchBeginPositionMF_01582187) - 1) AS ?thisPositionOn33) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582184, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582184) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582184, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionP0AGE4185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582186, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582186) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582186, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582186) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), '')))), '[^-]', ''))) AS ?step2199) .
BIND(((?step2199 + ?targetMotifMatchRegionMatchBeginPositionMF_01582187) - 1) AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t200) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) .
FILTER ((BOUND(?thisPositionOn33) && BOUND(?thisPositionOn34))) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch206 faldo:location ?templateMotifSequenceMatchRegionP0AGE4207 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AGE4209 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AGE4MF_01582202 .
?templateMotifSequenceMatchRegionP0AGE4207 faldo:begin ?templateMotifSequenceMatchBeginP0AGE4208 .
?templateMotifSequenceMatchBeginP0AGE4208 faldo:position ?templateMotifSequenceMatchBeginPositionP0AGE4203 ;
faldo:reference isoform:P0AGE4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AGE4209 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
?targetMotifMatch210 faldo:location ?targetMotifMatchRegionMatch211 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01582213 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AGE4MF_01582204 .
?targetMotifMatchRegionMatch211 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01582212 .
?targetMotifMatchRegionMatchBeginMF_01582212 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01582205 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01582213 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon201 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon201 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582202, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582202) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582202, CONCAT('^(?:-*[^-]){', STR(((67 - ?templateMotifSequenceMatchBeginPositionP0AGE4203) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1214) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582204, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582204) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582204, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582204) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), '')))), '[^-]', ''))) AS ?step2215) .
BIND(((?step2215 + ?targetMotifMatchRegionMatchBeginPositionMF_01582205) - 1) AS ?thisPositionOn39) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582202, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582202) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582202, CONCAT('^(?:-*[^-]){', STR(((83 - ?templateMotifSequenceMatchBeginPositionP0AGE4203) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1216) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582204, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582204) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582204, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582204) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), '')))), '[^-]', ''))) AS ?step2217) .
BIND(((?step2217 + ?targetMotifMatchRegionMatchBeginPositionMF_01582205) - 1) AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t218) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse38) .
FILTER ((BOUND(?thisPositionOn39) && BOUND(?thisPositionOn40))) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch224 faldo:location ?templateMotifSequenceMatchRegionP0AGE4225 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AGE4227 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AGE4MF_01582220 .
?templateMotifSequenceMatchRegionP0AGE4225 faldo:begin ?templateMotifSequenceMatchBeginP0AGE4226 .
?templateMotifSequenceMatchBeginP0AGE4226 faldo:position ?templateMotifSequenceMatchBeginPositionP0AGE4221 ;
faldo:reference isoform:P0AGE4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AGE4227 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
?targetMotifMatch228 faldo:location ?targetMotifMatchRegionMatch229 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01582231 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AGE4MF_01582222 .
?targetMotifMatchRegionMatch229 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01582230 .
?targetMotifMatchRegionMatchBeginMF_01582230 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01582223 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01582231 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon219 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon219 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582220, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582220) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582220, CONCAT('^(?:-*[^-]){', STR(((84 - ?templateMotifSequenceMatchBeginPositionP0AGE4221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1232) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582222, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582222) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582222, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582222) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1232), '}'), '')))), '[^-]', ''))) AS ?step2233) .
BIND(((?step2233 + ?targetMotifMatchRegionMatchBeginPositionMF_01582223) - 1) AS ?thisPositionOn45) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582220, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582220) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582220, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionP0AGE4221) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582222, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582222) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582222, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582222) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582222, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) .
BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_01582223) - 1) AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t236) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse44) .
FILTER ((BOUND(?thisPositionOn45) && BOUND(?thisPositionOn46))) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch242 faldo:location ?templateMotifSequenceMatchRegionP0AGE4243 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AGE4245 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AGE4MF_01582238 .
?templateMotifSequenceMatchRegionP0AGE4243 faldo:begin ?templateMotifSequenceMatchBeginP0AGE4244 .
?templateMotifSequenceMatchBeginP0AGE4244 faldo:position ?templateMotifSequenceMatchBeginPositionP0AGE4239 ;
faldo:reference isoform:P0AGE4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AGE4245 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
?targetMotifMatch246 faldo:location ?targetMotifMatchRegionMatch247 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01582249 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AGE4MF_01582240 .
?targetMotifMatchRegionMatch247 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01582248 .
?targetMotifMatchRegionMatchBeginMF_01582248 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01582241 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01582249 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon237 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon237 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582238, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582238) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582238, CONCAT('^(?:-*[^-]){', STR(((105 - ?templateMotifSequenceMatchBeginPositionP0AGE4239) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1250) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582240, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582240) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582240, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1250), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582240, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582240) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582240, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1250), '}'), '')))), '[^-]', ''))) AS ?step2251) .
BIND(((?step2251 + ?targetMotifMatchRegionMatchBeginPositionMF_01582241) - 1) AS ?thisPositionOn51) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582238, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582238) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582238, CONCAT('^(?:-*[^-]){', STR(((142 - ?templateMotifSequenceMatchBeginPositionP0AGE4239) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1252) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582240, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582240) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582240, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582240, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582240) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582240, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), '')))), '[^-]', ''))) AS ?step2253) .
BIND(((?step2253 + ?targetMotifMatchRegionMatchBeginPositionMF_01582241) - 1) AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t254) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse50) .
FILTER ((BOUND(?thisPositionOn51) && BOUND(?thisPositionOn52))) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch260 faldo:location ?templateMotifSequenceMatchRegionP0AGE4261 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AGE4263 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AGE4MF_01582256 .
?templateMotifSequenceMatchRegionP0AGE4261 faldo:begin ?templateMotifSequenceMatchBeginP0AGE4262 .
?templateMotifSequenceMatchBeginP0AGE4262 faldo:position ?templateMotifSequenceMatchBeginPositionP0AGE4257 ;
faldo:reference isoform:P0AGE4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AGE4263 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
?targetMotifMatch264 faldo:location ?targetMotifMatchRegionMatch265 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01582267 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AGE4MF_01582258 .
?targetMotifMatchRegionMatch265 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01582266 .
?targetMotifMatchRegionMatchBeginMF_01582266 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01582259 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01582267 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon255 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon255 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582256, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582256) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582256, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionP0AGE4257) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1268) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582258, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582258) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582258, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582258) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), '')))), '[^-]', ''))) AS ?step2269) .
BIND(((?step2269 + ?targetMotifMatchRegionMatchBeginPositionMF_01582259) - 1) AS ?thisPositionOn57) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582256, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582256) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582256, CONCAT('^(?:-*[^-]){', STR(((163 - ?templateMotifSequenceMatchBeginPositionP0AGE4257) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1270) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582258, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582258) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582258, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582258) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), '')))), '[^-]', ''))) AS ?step2271) .
BIND(((?step2271 + ?targetMotifMatchRegionMatchBeginPositionMF_01582259) - 1) AS ?thisPositionOn58) .
BIND(?this AS ?pfs1t272) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse56) .
FILTER ((BOUND(?thisPositionOn57) && BOUND(?thisPositionOn58))) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch278 faldo:location ?templateMotifSequenceMatchRegionP0AGE4279 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AGE4281 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AGE4MF_01582274 .
?templateMotifSequenceMatchRegionP0AGE4279 faldo:begin ?templateMotifSequenceMatchBeginP0AGE4280 .
?templateMotifSequenceMatchBeginP0AGE4280 faldo:position ?templateMotifSequenceMatchBeginPositionP0AGE4275 ;
faldo:reference isoform:P0AGE4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AGE4281 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
?targetMotifMatch282 faldo:location ?targetMotifMatchRegionMatch283 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01582285 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AGE4MF_01582276 .
?targetMotifMatchRegionMatch283 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01582284 .
?targetMotifMatchRegionMatchBeginMF_01582284 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01582277 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01582285 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon273 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon273 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582274, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582274) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582274, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionP0AGE4275) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1286) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582276, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582276) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1286), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582276, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582276) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1286), '}'), '')))), '[^-]', ''))) AS ?step2287) .
BIND(((?step2287 + ?targetMotifMatchRegionMatchBeginPositionMF_01582277) - 1) AS ?thisPositionOn63) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582274, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582274) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582274, CONCAT('^(?:-*[^-]){', STR(((179 - ?templateMotifSequenceMatchBeginPositionP0AGE4275) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1288) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582276, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582276) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1288), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582276, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582276) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1288), '}'), '')))), '[^-]', ''))) AS ?step2289) .
BIND(((?step2289 + ?targetMotifMatchRegionMatchBeginPositionMF_01582277) - 1) AS ?thisPositionOn64) .
BIND(?this AS ?pfs1t290) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse62) .
FILTER ((BOUND(?thisPositionOn63) && BOUND(?thisPositionOn64))) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch296 faldo:location ?templateMotifSequenceMatchRegionP0AGE4297 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AGE4299 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AGE4MF_01582292 .
?templateMotifSequenceMatchRegionP0AGE4297 faldo:begin ?templateMotifSequenceMatchBeginP0AGE4298 .
?templateMotifSequenceMatchBeginP0AGE4298 faldo:position ?templateMotifSequenceMatchBeginPositionP0AGE4293 ;
faldo:reference isoform:P0AGE4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AGE4299 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
?targetMotifMatch300 faldo:location ?targetMotifMatchRegionMatch301 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01582303 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AGE4MF_01582294 .
?targetMotifMatchRegionMatch301 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01582302 .
?targetMotifMatchRegionMatchBeginMF_01582302 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01582295 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01582303 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon291 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon291 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582292, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582292) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582292, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionP0AGE4293) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1304) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582294, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582294) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1304), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582294, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582294) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1304), '}'), '')))), '[^-]', ''))) AS ?step2305) .
BIND(((?step2305 + ?targetMotifMatchRegionMatchBeginPositionMF_01582295) - 1) AS ?thisPositionOn69) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582292, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582292) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582292, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionP0AGE4293) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1306) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582294, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582294) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1306), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582294, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582294) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582294, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1306), '}'), '')))), '[^-]', ''))) AS ?step2307) .
BIND(((?step2307 + ?targetMotifMatchRegionMatchBeginPositionMF_01582295) - 1) AS ?thisPositionOn70) .
BIND(?this AS ?pfs1t308) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse68) .
FILTER ((BOUND(?thisPositionOn69) && BOUND(?thisPositionOn70))) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch314 faldo:location ?templateMotifSequenceMatchRegionP0AGE4315 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AGE4317 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AGE4MF_01582310 .
?templateMotifSequenceMatchRegionP0AGE4315 faldo:begin ?templateMotifSequenceMatchBeginP0AGE4316 .
?templateMotifSequenceMatchBeginP0AGE4316 faldo:position ?templateMotifSequenceMatchBeginPositionP0AGE4311 ;
faldo:reference isoform:P0AGE4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AGE4317 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
?targetMotifMatch318 faldo:location ?targetMotifMatchRegionMatch319 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01582321 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AGE4MF_01582312 .
?targetMotifMatchRegionMatch319 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01582320 .
?targetMotifMatchRegionMatchBeginMF_01582320 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01582313 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01582321 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon309 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon309 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582310, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582310) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582310, CONCAT('^(?:-*[^-]){', STR(((201 - ?templateMotifSequenceMatchBeginPositionP0AGE4311) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1322) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582312, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582312) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1322), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582312, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582312) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1322), '}'), '')))), '[^-]', ''))) AS ?step2323) .
BIND(((?step2323 + ?targetMotifMatchRegionMatchBeginPositionMF_01582313) - 1) AS ?thisPositionOn75) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582310, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582310) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582310, CONCAT('^(?:-*[^-]){', STR(((217 - ?templateMotifSequenceMatchBeginPositionP0AGE4311) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1324) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582312, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582312) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582312, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582312) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), '')))), '[^-]', ''))) AS ?step2325) .
BIND(((?step2325 + ?targetMotifMatchRegionMatchBeginPositionMF_01582313) - 1) AS ?thisPositionOn76) .
BIND(?this AS ?pfs1t326) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse74) .
FILTER ((BOUND(?thisPositionOn75) && BOUND(?thisPositionOn76))) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a72')) AS ?annotation72) .
BIND(?this AS ?pfs71) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch332 faldo:location ?templateMotifSequenceMatchRegionP0AGE4333 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AGE4335 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AGE4MF_01582328 .
?templateMotifSequenceMatchRegionP0AGE4333 faldo:begin ?templateMotifSequenceMatchBeginP0AGE4334 .
?templateMotifSequenceMatchBeginP0AGE4334 faldo:position ?templateMotifSequenceMatchBeginPositionP0AGE4329 ;
faldo:reference isoform:P0AGE4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AGE4335 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
?targetMotifMatch336 faldo:location ?targetMotifMatchRegionMatch337 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01582339 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AGE4MF_01582330 .
?targetMotifMatchRegionMatch337 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01582338 .
?targetMotifMatchRegionMatchBeginMF_01582338 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01582331 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01582339 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon327 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon327 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582328, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582328) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582328, CONCAT('^(?:-*[^-]){', STR(((218 - ?templateMotifSequenceMatchBeginPositionP0AGE4329) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1340) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582330, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582330) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582330, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1340), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582330, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582330) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582330, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1340), '}'), '')))), '[^-]', ''))) AS ?step2341) .
BIND(((?step2341 + ?targetMotifMatchRegionMatchBeginPositionMF_01582331) - 1) AS ?thisPositionOn81) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582328, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582328) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582328, CONCAT('^(?:-*[^-]){', STR(((238 - ?templateMotifSequenceMatchBeginPositionP0AGE4329) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1342) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582330, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582330) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582330, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582330, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582330) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582330, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), '')))), '[^-]', ''))) AS ?step2343) .
BIND(((?step2343 + ?targetMotifMatchRegionMatchBeginPositionMF_01582331) - 1) AS ?thisPositionOn82) .
BIND(?this AS ?pfs1t344) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfsb79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfse80) .
FILTER ((BOUND(?thisPositionOn81) && BOUND(?thisPositionOn82))) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a78')) AS ?annotation78) .
BIND(?this AS ?pfs77) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch350 faldo:location ?templateMotifSequenceMatchRegionP0AGE4351 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AGE4353 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AGE4MF_01582346 .
?templateMotifSequenceMatchRegionP0AGE4351 faldo:begin ?templateMotifSequenceMatchBeginP0AGE4352 .
?templateMotifSequenceMatchBeginP0AGE4352 faldo:position ?templateMotifSequenceMatchBeginPositionP0AGE4347 ;
faldo:reference isoform:P0AGE4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AGE4353 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
?targetMotifMatch354 faldo:location ?targetMotifMatchRegionMatch355 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01582357 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AGE4MF_01582348 .
?targetMotifMatchRegionMatch355 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01582356 .
?targetMotifMatchRegionMatchBeginMF_01582356 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01582349 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01582357 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon345 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon345 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582346, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582346) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582346, CONCAT('^(?:-*[^-]){', STR(((239 - ?templateMotifSequenceMatchBeginPositionP0AGE4347) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1358) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582348, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582348) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582348, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1358), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582348, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582348) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582348, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1358), '}'), '')))), '[^-]', ''))) AS ?step2359) .
BIND(((?step2359 + ?targetMotifMatchRegionMatchBeginPositionMF_01582349) - 1) AS ?thisPositionOn87) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582346, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582346) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582346, CONCAT('^(?:-*[^-]){', STR(((299 - ?templateMotifSequenceMatchBeginPositionP0AGE4347) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1360) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582348, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582348) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582348, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1360), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582348, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582348) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582348, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1360), '}'), '')))), '[^-]', ''))) AS ?step2361) .
BIND(((?step2361 + ?targetMotifMatchRegionMatchBeginPositionMF_01582349) - 1) AS ?thisPositionOn88) .
BIND(?this AS ?pfs1t362) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse86) .
FILTER ((BOUND(?thisPositionOn87) && BOUND(?thisPositionOn88))) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a84')) AS ?annotation84) .
BIND(?this AS ?pfs83) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch368 faldo:location ?templateMotifSequenceMatchRegionP0AGE4369 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AGE4371 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AGE4MF_01582364 .
?templateMotifSequenceMatchRegionP0AGE4369 faldo:begin ?templateMotifSequenceMatchBeginP0AGE4370 .
?templateMotifSequenceMatchBeginP0AGE4370 faldo:position ?templateMotifSequenceMatchBeginPositionP0AGE4365 ;
faldo:reference isoform:P0AGE4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AGE4371 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
?targetMotifMatch372 faldo:location ?targetMotifMatchRegionMatch373 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01582375 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AGE4MF_01582366 .
?targetMotifMatchRegionMatch373 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01582374 .
?targetMotifMatchRegionMatchBeginMF_01582374 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01582367 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01582375 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon363 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon363 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582364, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582364) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582364, CONCAT('^(?:-*[^-]){', STR(((300 - ?templateMotifSequenceMatchBeginPositionP0AGE4365) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1376) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582366, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582366) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582366, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1376), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582366, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582366) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582366, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1376), '}'), '')))), '[^-]', ''))) AS ?step2377) .
BIND(((?step2377 + ?targetMotifMatchRegionMatchBeginPositionMF_01582367) - 1) AS ?thisPositionOn93) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582364, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582364) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582364, CONCAT('^(?:-*[^-]){', STR(((320 - ?templateMotifSequenceMatchBeginPositionP0AGE4365) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1378) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582366, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582366) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582366, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1378), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582366, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582366) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582366, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1378), '}'), '')))), '[^-]', ''))) AS ?step2379) .
BIND(((?step2379 + ?targetMotifMatchRegionMatchBeginPositionMF_01582367) - 1) AS ?thisPositionOn94) .
BIND(?this AS ?pfs1t380) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfsb91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfse92) .
FILTER ((BOUND(?thisPositionOn93) && BOUND(?thisPositionOn94))) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a90')) AS ?annotation90) .
BIND(?this AS ?pfs89) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch386 faldo:location ?templateMotifSequenceMatchRegionP0AGE4387 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AGE4389 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AGE4MF_01582382 .
?templateMotifSequenceMatchRegionP0AGE4387 faldo:begin ?templateMotifSequenceMatchBeginP0AGE4388 .
?templateMotifSequenceMatchBeginP0AGE4388 faldo:position ?templateMotifSequenceMatchBeginPositionP0AGE4383 ;
faldo:reference isoform:P0AGE4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AGE4389 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
?targetMotifMatch390 faldo:location ?targetMotifMatchRegionMatch391 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01582393 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AGE4MF_01582384 .
?targetMotifMatchRegionMatch391 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01582392 .
?targetMotifMatchRegionMatchBeginMF_01582392 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01582385 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01582393 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon381 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon381 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582382, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582382) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582382, CONCAT('^(?:-*[^-]){', STR(((321 - ?templateMotifSequenceMatchBeginPositionP0AGE4383) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1394) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582384, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582384) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1394), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582384, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582384) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1394), '}'), '')))), '[^-]', ''))) AS ?step2395) .
BIND(((?step2395 + ?targetMotifMatchRegionMatchBeginPositionMF_01582385) - 1) AS ?thisPositionOn99) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582382, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582382) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582382, CONCAT('^(?:-*[^-]){', STR(((331 - ?templateMotifSequenceMatchBeginPositionP0AGE4383) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1396) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582384, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582384) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1396), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582384, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582384) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1396), '}'), '')))), '[^-]', ''))) AS ?step2397) .
BIND(((?step2397 + ?targetMotifMatchRegionMatchBeginPositionMF_01582385) - 1) AS ?thisPositionOn100) .
BIND(?this AS ?pfs1t398) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfsb97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfse98) .
FILTER ((BOUND(?thisPositionOn99) && BOUND(?thisPositionOn100))) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a96')) AS ?annotation96) .
BIND(?this AS ?pfs95) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch404 faldo:location ?templateMotifSequenceMatchRegionP0AGE4405 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AGE4407 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AGE4MF_01582400 .
?templateMotifSequenceMatchRegionP0AGE4405 faldo:begin ?templateMotifSequenceMatchBeginP0AGE4406 .
?templateMotifSequenceMatchBeginP0AGE4406 faldo:position ?templateMotifSequenceMatchBeginPositionP0AGE4401 ;
faldo:reference isoform:P0AGE4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AGE4407 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
?targetMotifMatch408 faldo:location ?targetMotifMatchRegionMatch409 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01582411 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AGE4MF_01582402 .
?targetMotifMatchRegionMatch409 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01582410 .
?targetMotifMatchRegionMatchBeginMF_01582410 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01582403 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01582411 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon399 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon399 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582400, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582400) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582400, CONCAT('^(?:-*[^-]){', STR(((332 - ?templateMotifSequenceMatchBeginPositionP0AGE4401) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1412) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582402, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582402) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582402, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1412), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582402, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582402) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582402, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1412), '}'), '')))), '[^-]', ''))) AS ?step2413) .
BIND(((?step2413 + ?targetMotifMatchRegionMatchBeginPositionMF_01582403) - 1) AS ?thisPositionOn105) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582400, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582400) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582400, CONCAT('^(?:-*[^-]){', STR(((352 - ?templateMotifSequenceMatchBeginPositionP0AGE4401) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1414) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582402, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582402) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582402, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1414), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582402, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582402) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582402, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1414), '}'), '')))), '[^-]', ''))) AS ?step2415) .
BIND(((?step2415 + ?targetMotifMatchRegionMatchBeginPositionMF_01582403) - 1) AS ?thisPositionOn106) .
BIND(?this AS ?pfs1t416) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse104) .
FILTER ((BOUND(?thisPositionOn105) && BOUND(?thisPositionOn106))) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a102')) AS ?annotation102) .
BIND(?this AS ?pfs101) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch422 faldo:location ?templateMotifSequenceMatchRegionP0AGE4423 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AGE4425 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AGE4MF_01582418 .
?templateMotifSequenceMatchRegionP0AGE4423 faldo:begin ?templateMotifSequenceMatchBeginP0AGE4424 .
?templateMotifSequenceMatchBeginP0AGE4424 faldo:position ?templateMotifSequenceMatchBeginPositionP0AGE4419 ;
faldo:reference isoform:P0AGE4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AGE4425 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
?targetMotifMatch426 faldo:location ?targetMotifMatchRegionMatch427 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01582429 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AGE4MF_01582420 .
?targetMotifMatchRegionMatch427 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01582428 .
?targetMotifMatchRegionMatchBeginMF_01582428 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01582421 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01582429 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon417 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon417 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582418, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582418) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582418, CONCAT('^(?:-*[^-]){', STR(((353 - ?templateMotifSequenceMatchBeginPositionP0AGE4419) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1430) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582420, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582420) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582420, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1430), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582420, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582420) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582420, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1430), '}'), '')))), '[^-]', ''))) AS ?step2431) .
BIND(((?step2431 + ?targetMotifMatchRegionMatchBeginPositionMF_01582421) - 1) AS ?thisPositionOn111) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn112) .
BIND(?this AS ?pfs1t432) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfsb109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfse110) .
FILTER ((BOUND(?thisPositionOn111) && BOUND(?thisPositionOn112))) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a108')) AS ?annotation108) .
BIND(?this AS ?pfs107) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch438 faldo:location ?templateMotifSequenceMatchRegionP0AGE4439 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0AGE4441 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0AGE4MF_01582434 .
?templateMotifSequenceMatchRegionP0AGE4439 faldo:begin ?templateMotifSequenceMatchBeginP0AGE4440 .
?templateMotifSequenceMatchBeginP0AGE4440 faldo:position ?templateMotifSequenceMatchBeginPositionP0AGE4435 ;
faldo:reference isoform:P0AGE4-1 .
?templateMotifSequenceProfileAlignmentOperationP0AGE4441 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
?targetMotifMatch442 faldo:location ?targetMotifMatchRegionMatch443 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01582445 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0AGE4MF_01582436 .
?targetMotifMatchRegionMatch443 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01582444 .
?targetMotifMatchRegionMatchBeginMF_01582444 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01582437 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01582445 edam:has_input signature:MF_01582 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon433 {taxon:620 taxon:561}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon433 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0AGE4MF_01582434, 1, (STRLEN(?templateMotifCigarP0AGE4MF_01582434) - STRLEN(REPLACE(?templateMotifCigarP0AGE4MF_01582434, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP0AGE4435) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1446) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582436, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582436) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582436, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1446), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0AGE4MF_01582436, 1, (STRLEN(?targetMotifMatchCigarP0AGE4MF_01582436) - STRLEN(REPLACE(?targetMotifMatchCigarP0AGE4MF_01582436, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1446), '}'), '')))), '[^-]', ''))) AS ?step2447) .
BIND(((?step2447 + ?targetMotifMatchRegionMatchBeginPositionMF_01582437) - 1) AS ?thisPositionOn117) .
BIND(?thisPositionOn117 AS ?thisPositionOn118) .
BIND(?this AS ?pfs1t448) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfsb115) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn118))) AS ?pfse116) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn117, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a114')) AS ?annotation114) .
BIND(?this AS ?pfs113) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:proteome .
} UNION {
?this up:proteome ?p449 .
?p449 skos:narrower .
}
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
{
FILTER (! (EXISTS {
{
?this up:proteome .
} UNION {
?this up:proteome ?p450 .
?p450 skos:narrower .
}
})) .
} UNION {
{
?this up:proteome .
} UNION {
?this up:proteome ?p451 .
?p451 skos:narrower .
}
}
BIND(?this AS ?case10) .
}
OPTIONAL {
?this up:annotation ?samtransmembrane452 ;
up:sequence ?thisSequence .
?samtransmembrane452 up:range ?samtransmembraner453 ;
rdf:type up:Transmembrane_Annotation .
?samtransmembraner453 faldo:begin ?samtransmembraneb454 ;
faldo:end ?samtransmembranee455 .
?samtransmembraneb454 faldo:position ?samtransmembranebp456 ;
faldo:reference ?thisSequence .
?samtransmembranee455 faldo:position ?samtransmembraneep457 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam119) .
}
BIND(URI(CONCAT(STR(?this), '#MF_01582a125')) AS ?keyword125) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a126')) AS ?keyword126) .
BIND(URI(CONCAT(STR(?this), '#MF_01582a127')) AS ?keyword127) .
}
"xsd:string |
