| http://purl.uniprot.org/unirules/MF_01601#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:579103 up:source unirule:MF_01601 .
_:579104 up:source unirule:MF_01601 .
_:579105 up:source unirule:MF_01601 .
_:579106 up:source unirule:MF_01601 .
_:579107 up:source unirule:MF_01601 .
_:579108 up:source unirule:MF_01601 .
_:579109 up:source unirule:MF_01601 .
_:579110 up:source unirule:MF_01601 .
_:579111 up:source unirule:MF_01601 .
_:579112 up:source unirule:MF_01601 .
_:579113 up:source unirule:MF_01601 .
_:579114 up:source unirule:MF_01601 .
_:579115 up:source unirule:MF_01601 .
_:579116 up:source unirule:MF_01601 .
_:579117 up:source unirule:MF_01601 .
_:579118 up:source unirule:MF_01601 .
_:579119 up:source unirule:MF_01601 .
_:579120 up:source unirule:MF_01601 .
_:579121 up:source unirule:MF_01601 .
_:579122 up:source unirule:MF_01601 .
_:579123 up:source unirule:MF_01601 .
_:579124 up:source unirule:MF_01601 .
_:579125 up:source unirule:MF_01601 .
_:579126 up:source unirule:MF_01601 .
_:579127 up:source unirule:MF_01601 .
_:579128 up:source unirule:MF_01601 .
_:579129 up:source unirule:MF_01601 .
_:579130 up:source unirule:MF_01601 .
_:579131 up:source unirule:MF_01601 .
_:579132 up:source unirule:MF_01601 .
_:579133 up:source unirule:MF_01601 .
_:579134 up:source unirule:MF_01601 .
_:579135 up:source unirule:MF_01601 .
_:579136 up:source unirule:MF_01601 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0005975 ,
GO:0008712 ,
keyword:119 ,
keyword:413 ,
keyword:521 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.1.3.20' ;
up:fullName 'ADP-L-glycero-D-manno-heptose-6-epimerase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'ADP-L-glycero-beta-D-manno-heptose-6-epimerase' ;
up:shortName 'ADP-glyceromanno-heptose 6-epimerase' ,
'ADP-hep 6-epimerase' ,
'AGME' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'hldD' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:58349 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 NADP(+) per subunit.' .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Nucleotide-sugar biosynthesis; ADP-L-glycero-beta-D-manno-heptose biosynthesis; ADP-L-glycero-beta-D-manno-heptose from D-glycero-beta-D-manno-heptose 7-phosphate: step 4/4.' .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Homopentamer.' .
?annotation9 a up:Domain_Annotation ;
rdfs:comment 'Contains a large N-terminal NADP-binding domain, and a smaller C-terminal substrate-binding domain.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.' .
?case11 up:classifiedWith keyword:7 .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:58349 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:58349 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:58349 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf ?molecule44 .
?molecule44 rdfs:label 'substrate' .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb49 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb55 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
up:ligand ?ligand63 ;
rdf:type up:Binding_Site_Annotation .
?pfsb61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand63 rdfs:subClassOf chebi:58349 .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
up:ligand ?ligand70 ;
rdf:type up:Binding_Site_Annotation .
?pfsb68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?ligand70 rdfs:subClassOf chebi:58349 .
?pfs73 up:annotation ?annotation74 .
?annotation74 faldo:begin ?pfsb75 ;
faldo:end ?pfse76 ;
up:ligand ?ligand77 ;
rdf:type up:Binding_Site_Annotation .
?pfsb75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfse76 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?ligand77 rdfs:subClassOf chebi:58349 .
?pfs80 up:annotation ?annotation81 .
?annotation81 faldo:begin ?pfsb82 ;
faldo:end ?pfse83 ;
up:ligand ?ligand84 ;
rdf:type up:Binding_Site_Annotation .
?pfsb82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfse83 faldo:position ?thisPositionOn86 ;
rdf:type faldo:ExactPosition .
?ligand84 rdfs:subClassOf chebi:58349 .
?pfs87 up:annotation ?annotation88 .
?annotation88 faldo:begin ?pfsb89 ;
faldo:end ?pfse90 ;
up:ligand ?ligand91 ;
rdf:type up:Binding_Site_Annotation .
?pfsb89 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?pfse90 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?ligand91 rdfs:subClassOf ?molecule92 .
?molecule92 rdfs:label 'substrate' .
?pfs95 up:annotation ?annotation96 .
?annotation96 faldo:begin ?pfsb97 ;
faldo:end ?pfse98 ;
up:ligand ?ligand99 ;
rdf:type up:Binding_Site_Annotation .
?pfsb97 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?pfse98 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?ligand99 rdfs:subClassOf chebi:58349 .
?pfs102 up:annotation ?annotation103 .
?annotation103 faldo:begin ?pfsb104 ;
faldo:end ?pfse105 ;
up:ligand ?ligand106 ;
rdf:type up:Binding_Site_Annotation .
?pfsb104 faldo:position ?thisPositionOn107 ;
rdf:type faldo:ExactPosition .
?pfse105 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?ligand106 rdfs:subClassOf chebi:58349 .
?pfs109 up:annotation ?annotation110 .
?annotation110 faldo:begin ?pfsb111 ;
faldo:end ?pfse112 ;
up:ligand ?ligand113 ;
rdf:type up:Binding_Site_Annotation .
?pfsb111 faldo:position ?thisPositionOn115 ;
rdf:type faldo:ExactPosition .
?pfse112 faldo:position ?thisPositionOn116 ;
rdf:type faldo:ExactPosition .
?ligand113 rdfs:subClassOf ?molecule114 .
?molecule114 rdfs:label 'substrate' .
?pfs117 up:annotation ?annotation118 .
?annotation118 faldo:begin ?pfsb119 ;
faldo:end ?pfse120 ;
up:ligand ?ligand121 ;
rdf:type up:Binding_Site_Annotation .
?pfsb119 faldo:position ?thisPositionOn123 ;
rdf:type faldo:ExactPosition .
?pfse120 faldo:position ?thisPositionOn124 ;
rdf:type faldo:ExactPosition .
?ligand121 rdfs:subClassOf ?molecule122 .
?molecule122 rdfs:label 'substrate' .
?pfs125 up:annotation ?annotation126 .
?annotation126 faldo:begin ?pfsb127 ;
faldo:end ?pfse128 ;
up:ligand ?ligand129 ;
rdf:type up:Binding_Site_Annotation .
?pfsb127 faldo:position ?thisPositionOn131 ;
rdf:type faldo:ExactPosition .
?pfse128 faldo:position ?thisPositionOn132 ;
rdf:type faldo:ExactPosition .
?ligand129 rdfs:subClassOf ?molecule130 .
?molecule130 rdfs:label 'substrate' .
?pfs133 up:annotation ?annotation134 .
?annotation134 faldo:begin ?pfsb135 ;
faldo:end ?pfse136 ;
up:ligand ?ligand137 ;
rdf:type up:Binding_Site_Annotation .
?pfsb135 faldo:position ?thisPositionOn139 ;
rdf:type faldo:ExactPosition .
?pfse136 faldo:position ?thisPositionOn140 ;
rdf:type faldo:ExactPosition .
?ligand137 rdfs:subClassOf ?molecule138 .
?molecule138 rdfs:label 'substrate' .
_:579137 a rdf:Statement ;
up:attribution _:579103 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:579138 a rdf:Statement ;
up:attribution _:579104 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:579139 a rdf:Statement ;
up:attribution _:579105 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:579140 a rdf:Statement ;
up:attribution _:579106 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:579141 a rdf:Statement ;
up:attribution _:579107 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:579142 a rdf:Statement ;
up:attribution _:579108 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:579143 a rdf:Statement ;
up:attribution _:579109 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:579144 a rdf:Statement ;
up:attribution _:579110 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:579145 a rdf:Statement ;
up:attribution _:579111 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:579146 a rdf:Statement ;
up:attribution _:579112 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:579147 a rdf:Statement ;
up:attribution _:579113 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:119 .
_:579148 a rdf:Statement ;
up:attribution _:579114 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:579149 a rdf:Statement ;
up:attribution _:579115 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:579150 a rdf:Statement ;
up:attribution _:579116 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008712 .
_:579151 a rdf:Statement ;
up:attribution _:579117 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005975 .
_:579152 a rdf:Statement ;
up:attribution _:579118 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
_:579153 a rdf:Statement ;
up:source unirule:MF_01601 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:579154 a rdf:Statement ;
up:attribution _:579119 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:579155 a rdf:Statement ;
up:source unirule:MF_01601 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:579156 a rdf:Statement ;
up:attribution _:579120 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:579157 a rdf:Statement ;
up:source unirule:MF_01601 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:579158 a rdf:Statement ;
up:attribution _:579121 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:579159 a rdf:Statement ;
up:source unirule:MF_01601 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:579160 a rdf:Statement ;
up:attribution _:579122 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:579161 a rdf:Statement ;
up:source unirule:MF_01601 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:579162 a rdf:Statement ;
up:attribution _:579123 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:579163 a rdf:Statement ;
up:source unirule:MF_01601 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:579164 a rdf:Statement ;
up:attribution _:579124 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:579165 a rdf:Statement ;
up:source unirule:MF_01601 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:579166 a rdf:Statement ;
up:attribution _:579125 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:579167 a rdf:Statement ;
up:source unirule:MF_01601 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:579168 a rdf:Statement ;
up:attribution _:579126 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:579169 a rdf:Statement ;
up:source unirule:MF_01601 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:579170 a rdf:Statement ;
up:attribution _:579127 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:579171 a rdf:Statement ;
up:source unirule:MF_01601 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:579172 a rdf:Statement ;
up:attribution _:579128 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:579173 a rdf:Statement ;
up:source unirule:MF_01601 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:579174 a rdf:Statement ;
up:attribution _:579129 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:579175 a rdf:Statement ;
up:source unirule:MF_01601 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:579176 a rdf:Statement ;
up:attribution _:579130 ;
rdf:subject ?pfs87 ;
rdf:predicate up:annotation ;
rdf:object ?annotation88 .
_:579177 a rdf:Statement ;
up:source unirule:MF_01601 ;
rdf:subject ?pfs95 ;
rdf:predicate up:annotation ;
rdf:object ?annotation96 .
_:579178 a rdf:Statement ;
up:attribution _:579131 ;
rdf:subject ?pfs95 ;
rdf:predicate up:annotation ;
rdf:object ?annotation96 .
_:579179 a rdf:Statement ;
up:source unirule:MF_01601 ;
rdf:subject ?pfs102 ;
rdf:predicate up:annotation ;
rdf:object ?annotation103 .
_:579180 a rdf:Statement ;
up:attribution _:579132 ;
rdf:subject ?pfs102 ;
rdf:predicate up:annotation ;
rdf:object ?annotation103 .
_:579181 a rdf:Statement ;
up:source unirule:MF_01601 ;
rdf:subject ?pfs109 ;
rdf:predicate up:annotation ;
rdf:object ?annotation110 .
_:579182 a rdf:Statement ;
up:attribution _:579133 ;
rdf:subject ?pfs109 ;
rdf:predicate up:annotation ;
rdf:object ?annotation110 .
_:579183 a rdf:Statement ;
up:source unirule:MF_01601 ;
rdf:subject ?pfs117 ;
rdf:predicate up:annotation ;
rdf:object ?annotation118 .
_:579184 a rdf:Statement ;
up:attribution _:579134 ;
rdf:subject ?pfs117 ;
rdf:predicate up:annotation ;
rdf:object ?annotation118 .
_:579185 a rdf:Statement ;
up:source unirule:MF_01601 ;
rdf:subject ?pfs125 ;
rdf:predicate up:annotation ;
rdf:object ?annotation126 .
_:579186 a rdf:Statement ;
up:attribution _:579135 ;
rdf:subject ?pfs125 ;
rdf:predicate up:annotation ;
rdf:object ?annotation126 .
_:579187 a rdf:Statement ;
up:source unirule:MF_01601 ;
rdf:subject ?pfs133 ;
rdf:predicate up:annotation ;
rdf:object ?annotation134 .
_:579188 a rdf:Statement ;
up:attribution _:579136 ;
rdf:subject ?pfs133 ;
rdf:predicate up:annotation ;
rdf:object ?annotation134 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01601
#Rule MF_01601 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01601 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_01601a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch146 faldo:location ?templateMotifSequenceMatchRegionP67910147 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP67910149 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP67910MF_01601142 .
?templateMotifSequenceMatchRegionP67910147 faldo:begin ?templateMotifSequenceMatchBeginP67910148 .
?templateMotifSequenceMatchBeginP67910148 faldo:position ?templateMotifSequenceMatchBeginPositionP67910143 ;
faldo:reference isoform:P67910-1 .
?templateMotifSequenceProfileAlignmentOperationP67910149 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
?targetMotifMatch150 faldo:location ?targetMotifMatchRegionMatch151 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01601153 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP67910MF_01601144 .
?targetMotifMatchRegionMatch151 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01601152 .
?targetMotifMatchRegionMatchBeginMF_01601152 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01601145 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01601153 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_18) .
VALUES ?supertaxon141 {taxon:561 taxon:620}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon141 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP67910MF_01601142, 1, (STRLEN(?templateMotifCigarP67910MF_01601142) - STRLEN(REPLACE(?templateMotifCigarP67910MF_01601142, CONCAT('^(?:-*[^-]){', STR(((267 - ?templateMotifSequenceMatchBeginPositionP67910143) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP67910MF_01601144, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601144) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP67910MF_01601144, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601144) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), '')))), '[^-]', ''))) AS ?step2155) .
BIND(((?step2155 + ?targetMotifMatchRegionMatchBeginPositionMF_01601145) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t156) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch161 faldo:location ?templateMotifSequenceMatchRegionP67910162 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP67910164 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP67910MF_01601157 .
?templateMotifSequenceMatchRegionP67910162 faldo:begin ?templateMotifSequenceMatchBeginP67910163 .
?templateMotifSequenceMatchBeginP67910163 faldo:position ?templateMotifSequenceMatchBeginPositionP67910158 ;
faldo:reference isoform:P67910-1 .
?templateMotifSequenceProfileAlignmentOperationP67910164 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
?targetMotifMatch165 faldo:location ?targetMotifMatchRegionMatch166 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01601168 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP67910MF_01601159 .
?targetMotifMatchRegionMatch166 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01601167 .
?targetMotifMatchRegionMatchBeginMF_01601167 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01601160 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01601168 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP67910MF_01601157, 1, (STRLEN(?templateMotifCigarP67910MF_01601157) - STRLEN(REPLACE(?templateMotifCigarP67910MF_01601157, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionP67910158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP67910MF_01601159, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601159) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP67910MF_01601159, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601159) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), '')))), '[^-]', ''))) AS ?step2170) .
BIND(((?step2170 + ?targetMotifMatchRegionMatchBeginPositionMF_01601160) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP67910MF_01601157, 1, (STRLEN(?templateMotifCigarP67910MF_01601157) - STRLEN(REPLACE(?templateMotifCigarP67910MF_01601157, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP67910158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP67910MF_01601159, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601159) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP67910MF_01601159, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601159) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) .
BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_01601160) - 1) AS ?thisPositionOn24) .
BIND(?this AS ?pfs2t173) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((BOUND(?thisPositionOn23) && BOUND(?thisPositionOn24))) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch178 faldo:location ?templateMotifSequenceMatchRegionP67910179 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP67910181 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP67910MF_01601174 .
?templateMotifSequenceMatchRegionP67910179 faldo:begin ?templateMotifSequenceMatchBeginP67910180 .
?templateMotifSequenceMatchBeginP67910180 faldo:position ?templateMotifSequenceMatchBeginPositionP67910175 ;
faldo:reference isoform:P67910-1 .
?templateMotifSequenceProfileAlignmentOperationP67910181 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
?targetMotifMatch182 faldo:location ?targetMotifMatchRegionMatch183 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01601185 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP67910MF_01601176 .
?targetMotifMatchRegionMatch183 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01601184 .
?targetMotifMatchRegionMatchBeginMF_01601184 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01601177 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01601185 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP67910MF_01601174, 1, (STRLEN(?templateMotifCigarP67910MF_01601174) - STRLEN(REPLACE(?templateMotifCigarP67910MF_01601174, CONCAT('^(?:-*[^-]){', STR(((31 - ?templateMotifSequenceMatchBeginPositionP67910175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP67910MF_01601176, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601176) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP67910MF_01601176, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601176) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), '')))), '[^-]', ''))) AS ?step2187) .
BIND(((?step2187 + ?targetMotifMatchRegionMatchBeginPositionMF_01601177) - 1) AS ?thisPositionOn30) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP67910MF_01601174, 1, (STRLEN(?templateMotifCigarP67910MF_01601174) - STRLEN(REPLACE(?templateMotifCigarP67910MF_01601174, CONCAT('^(?:-*[^-]){', STR(((32 - ?templateMotifSequenceMatchBeginPositionP67910175) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP67910MF_01601176, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601176) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP67910MF_01601176, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601176) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601176, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) .
BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_01601177) - 1) AS ?thisPositionOn31) .
BIND(?this AS ?pfs2t190) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((BOUND(?thisPositionOn30) && BOUND(?thisPositionOn31))) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch195 faldo:location ?templateMotifSequenceMatchRegionP67910196 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP67910198 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP67910MF_01601191 .
?templateMotifSequenceMatchRegionP67910196 faldo:begin ?templateMotifSequenceMatchBeginP67910197 .
?templateMotifSequenceMatchBeginP67910197 faldo:position ?templateMotifSequenceMatchBeginPositionP67910192 ;
faldo:reference isoform:P67910-1 .
?templateMotifSequenceProfileAlignmentOperationP67910198 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
?targetMotifMatch199 faldo:location ?targetMotifMatchRegionMatch200 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01601202 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP67910MF_01601193 .
?targetMotifMatchRegionMatch200 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01601201 .
?targetMotifMatchRegionMatchBeginMF_01601201 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01601194 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01601202 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP67910MF_01601191, 1, (STRLEN(?templateMotifCigarP67910MF_01601191) - STRLEN(REPLACE(?templateMotifCigarP67910MF_01601191, CONCAT('^(?:-*[^-]){', STR(((75 - ?templateMotifSequenceMatchBeginPositionP67910192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1203) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP67910MF_01601193, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601193) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP67910MF_01601193, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601193) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), '')))), '[^-]', ''))) AS ?step2204) .
BIND(((?step2204 + ?targetMotifMatchRegionMatchBeginPositionMF_01601194) - 1) AS ?thisPositionOn37) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP67910MF_01601191, 1, (STRLEN(?templateMotifCigarP67910MF_01601191) - STRLEN(REPLACE(?templateMotifCigarP67910MF_01601191, CONCAT('^(?:-*[^-]){', STR(((79 - ?templateMotifSequenceMatchBeginPositionP67910192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1205) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP67910MF_01601193, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601193) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP67910MF_01601193, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601193) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1205), '}'), '')))), '[^-]', ''))) AS ?step2206) .
BIND(((?step2206 + ?targetMotifMatchRegionMatchBeginPositionMF_01601194) - 1) AS ?thisPositionOn38) .
BIND(?this AS ?pfs2t207) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((BOUND(?thisPositionOn37) && BOUND(?thisPositionOn38))) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch212 faldo:location ?templateMotifSequenceMatchRegionP67910213 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP67910215 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP67910MF_01601208 .
?templateMotifSequenceMatchRegionP67910213 faldo:begin ?templateMotifSequenceMatchBeginP67910214 .
?templateMotifSequenceMatchBeginP67910214 faldo:position ?templateMotifSequenceMatchBeginPositionP67910209 ;
faldo:reference isoform:P67910-1 .
?templateMotifSequenceProfileAlignmentOperationP67910215 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
?targetMotifMatch216 faldo:location ?targetMotifMatchRegionMatch217 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01601219 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP67910MF_01601210 .
?targetMotifMatchRegionMatch217 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01601218 .
?targetMotifMatchRegionMatchBeginMF_01601218 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01601211 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01601219 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP67910MF_01601208, 1, (STRLEN(?templateMotifCigarP67910MF_01601208) - STRLEN(REPLACE(?templateMotifCigarP67910MF_01601208, CONCAT('^(?:-*[^-]){', STR(((201 - ?templateMotifSequenceMatchBeginPositionP67910209) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1220) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP67910MF_01601210, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601210) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP67910MF_01601210, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601210) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1220), '}'), '')))), '[^-]', ''))) AS ?step2221) .
BIND(((?step2221 + ?targetMotifMatchRegionMatchBeginPositionMF_01601211) - 1) AS ?thisPositionOn45) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP67910MF_01601208, 1, (STRLEN(?templateMotifCigarP67910MF_01601208) - STRLEN(REPLACE(?templateMotifCigarP67910MF_01601208, CONCAT('^(?:-*[^-]){', STR(((204 - ?templateMotifSequenceMatchBeginPositionP67910209) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1222) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP67910MF_01601210, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601210) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP67910MF_01601210, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601210) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601210, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1222), '}'), '')))), '[^-]', ''))) AS ?step2223) .
BIND(((?step2223 + ?targetMotifMatchRegionMatchBeginPositionMF_01601211) - 1) AS ?thisPositionOn46) .
BIND(?this AS ?pfs2t224) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse42) .
FILTER ((BOUND(?thisPositionOn45) && BOUND(?thisPositionOn46))) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch229 faldo:location ?templateMotifSequenceMatchRegionP67910230 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP67910232 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP67910MF_01601225 .
?templateMotifSequenceMatchRegionP67910230 faldo:begin ?templateMotifSequenceMatchBeginP67910231 .
?templateMotifSequenceMatchBeginP67910231 faldo:position ?templateMotifSequenceMatchBeginPositionP67910226 ;
faldo:reference isoform:P67910-1 .
?templateMotifSequenceProfileAlignmentOperationP67910232 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
?targetMotifMatch233 faldo:location ?targetMotifMatchRegionMatch234 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01601236 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP67910MF_01601227 .
?targetMotifMatchRegionMatch234 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01601235 .
?targetMotifMatchRegionMatchBeginMF_01601235 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01601228 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01601236 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP67910MF_01601225, 1, (STRLEN(?templateMotifCigarP67910MF_01601225) - STRLEN(REPLACE(?templateMotifCigarP67910MF_01601225, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP67910226) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1237) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP67910MF_01601227, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601227) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP67910MF_01601227, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601227) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601227, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1237), '}'), '')))), '[^-]', ''))) AS ?step2238) .
BIND(((?step2238 + ?targetMotifMatchRegionMatchBeginPositionMF_01601228) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs2t239) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch244 faldo:location ?templateMotifSequenceMatchRegionP67910245 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP67910247 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP67910MF_01601240 .
?templateMotifSequenceMatchRegionP67910245 faldo:begin ?templateMotifSequenceMatchBeginP67910246 .
?templateMotifSequenceMatchBeginP67910246 faldo:position ?templateMotifSequenceMatchBeginPositionP67910241 ;
faldo:reference isoform:P67910-1 .
?templateMotifSequenceProfileAlignmentOperationP67910247 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
?targetMotifMatch248 faldo:location ?targetMotifMatchRegionMatch249 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01601251 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP67910MF_01601242 .
?targetMotifMatchRegionMatch249 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01601250 .
?targetMotifMatchRegionMatchBeginMF_01601250 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01601243 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01601251 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP67910MF_01601240, 1, (STRLEN(?templateMotifCigarP67910MF_01601240) - STRLEN(REPLACE(?templateMotifCigarP67910MF_01601240, CONCAT('^(?:-*[^-]){', STR(((178 - ?templateMotifSequenceMatchBeginPositionP67910241) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1252) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP67910MF_01601242, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601242) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP67910MF_01601242, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601242) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601242, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1252), '}'), '')))), '[^-]', ''))) AS ?step2253) .
BIND(((?step2253 + ?targetMotifMatchRegionMatchBeginPositionMF_01601243) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs2t254) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch259 faldo:location ?templateMotifSequenceMatchRegionP67910260 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP67910262 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP67910MF_01601255 .
?templateMotifSequenceMatchRegionP67910260 faldo:begin ?templateMotifSequenceMatchBeginP67910261 .
?templateMotifSequenceMatchBeginP67910261 faldo:position ?templateMotifSequenceMatchBeginPositionP67910256 ;
faldo:reference isoform:P67910-1 .
?templateMotifSequenceProfileAlignmentOperationP67910262 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
?targetMotifMatch263 faldo:location ?targetMotifMatchRegionMatch264 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01601266 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP67910MF_01601257 .
?targetMotifMatchRegionMatch264 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01601265 .
?targetMotifMatchRegionMatchBeginMF_01601265 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01601258 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01601266 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP67910MF_01601255, 1, (STRLEN(?templateMotifCigarP67910MF_01601255) - STRLEN(REPLACE(?templateMotifCigarP67910MF_01601255, CONCAT('^(?:-*[^-]){', STR(((38 - ?templateMotifSequenceMatchBeginPositionP67910256) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1267) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP67910MF_01601257, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601257) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP67910MF_01601257, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601257) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601257, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1267), '}'), '')))), '[^-]', ''))) AS ?step2268) .
BIND(((?step2268 + ?targetMotifMatchRegionMatchBeginPositionMF_01601258) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs2t269) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) .
FILTER (REGEX('[KQR]', SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch274 faldo:location ?templateMotifSequenceMatchRegionP67910275 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP67910277 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP67910MF_01601270 .
?templateMotifSequenceMatchRegionP67910275 faldo:begin ?templateMotifSequenceMatchBeginP67910276 .
?templateMotifSequenceMatchBeginP67910276 faldo:position ?templateMotifSequenceMatchBeginPositionP67910271 ;
faldo:reference isoform:P67910-1 .
?templateMotifSequenceProfileAlignmentOperationP67910277 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
?targetMotifMatch278 faldo:location ?targetMotifMatchRegionMatch279 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01601281 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP67910MF_01601272 .
?targetMotifMatchRegionMatch279 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01601280 .
?targetMotifMatchRegionMatchBeginMF_01601280 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01601273 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01601281 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP67910MF_01601270, 1, (STRLEN(?templateMotifCigarP67910MF_01601270) - STRLEN(REPLACE(?templateMotifCigarP67910MF_01601270, CONCAT('^(?:-*[^-]){', STR(((53 - ?templateMotifSequenceMatchBeginPositionP67910271) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1282) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP67910MF_01601272, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601272) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP67910MF_01601272, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601272) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1282), '}'), '')))), '[^-]', ''))) AS ?step2283) .
BIND(((?step2283 + ?targetMotifMatchRegionMatchBeginPositionMF_01601273) - 1) AS ?thisPositionOn71) .
BIND(?thisPositionOn71 AS ?thisPositionOn72) .
BIND(?this AS ?pfs2t284) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse69) .
FILTER (REGEX('[KQR]', SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch289 faldo:location ?templateMotifSequenceMatchRegionP67910290 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP67910292 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP67910MF_01601285 .
?templateMotifSequenceMatchRegionP67910290 faldo:begin ?templateMotifSequenceMatchBeginP67910291 .
?templateMotifSequenceMatchBeginP67910291 faldo:position ?templateMotifSequenceMatchBeginPositionP67910286 ;
faldo:reference isoform:P67910-1 .
?templateMotifSequenceProfileAlignmentOperationP67910292 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
?targetMotifMatch293 faldo:location ?targetMotifMatchRegionMatch294 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01601296 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP67910MF_01601287 .
?targetMotifMatchRegionMatch294 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01601295 .
?targetMotifMatchRegionMatchBeginMF_01601295 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01601288 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01601296 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP67910MF_01601285, 1, (STRLEN(?templateMotifCigarP67910MF_01601285) - STRLEN(REPLACE(?templateMotifCigarP67910MF_01601285, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionP67910286) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1297) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP67910MF_01601287, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601287) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP67910MF_01601287, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601287) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601287, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1297), '}'), '')))), '[^-]', ''))) AS ?step2298) .
BIND(((?step2298 + ?targetMotifMatchRegionMatchBeginPositionMF_01601288) - 1) AS ?thisPositionOn78) .
BIND(?thisPositionOn78 AS ?thisPositionOn79) .
BIND(?this AS ?pfs2t299) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse76) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a74')) AS ?annotation74) .
BIND(?this AS ?pfs73) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch304 faldo:location ?templateMotifSequenceMatchRegionP67910305 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP67910307 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP67910MF_01601300 .
?templateMotifSequenceMatchRegionP67910305 faldo:begin ?templateMotifSequenceMatchBeginP67910306 .
?templateMotifSequenceMatchBeginP67910306 faldo:position ?templateMotifSequenceMatchBeginPositionP67910301 ;
faldo:reference isoform:P67910-1 .
?templateMotifSequenceProfileAlignmentOperationP67910307 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
?targetMotifMatch308 faldo:location ?targetMotifMatchRegionMatch309 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01601311 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP67910MF_01601302 .
?targetMotifMatchRegionMatch309 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01601310 .
?targetMotifMatchRegionMatchBeginMF_01601310 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01601303 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01601311 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP67910MF_01601300, 1, (STRLEN(?templateMotifCigarP67910MF_01601300) - STRLEN(REPLACE(?templateMotifCigarP67910MF_01601300, CONCAT('^(?:-*[^-]){', STR(((144 - ?templateMotifSequenceMatchBeginPositionP67910301) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1312) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP67910MF_01601302, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601302) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601302, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP67910MF_01601302, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601302) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601302, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), '')))), '[^-]', ''))) AS ?step2313) .
BIND(((?step2313 + ?targetMotifMatchRegionMatchBeginPositionMF_01601303) - 1) AS ?thisPositionOn85) .
BIND(?thisPositionOn85 AS ?thisPositionOn86) .
BIND(?this AS ?pfs2t314) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfsb82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn86))) AS ?pfse83) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn85, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a81')) AS ?annotation81) .
BIND(?this AS ?pfs80) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch319 faldo:location ?templateMotifSequenceMatchRegionP67910320 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP67910322 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP67910MF_01601315 .
?templateMotifSequenceMatchRegionP67910320 faldo:begin ?templateMotifSequenceMatchBeginP67910321 .
?templateMotifSequenceMatchBeginP67910321 faldo:position ?templateMotifSequenceMatchBeginPositionP67910316 ;
faldo:reference isoform:P67910-1 .
?templateMotifSequenceProfileAlignmentOperationP67910322 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
?targetMotifMatch323 faldo:location ?targetMotifMatchRegionMatch324 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01601326 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP67910MF_01601317 .
?targetMotifMatchRegionMatch324 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01601325 .
?targetMotifMatchRegionMatchBeginMF_01601325 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01601318 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01601326 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP67910MF_01601315, 1, (STRLEN(?templateMotifCigarP67910MF_01601315) - STRLEN(REPLACE(?templateMotifCigarP67910MF_01601315, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionP67910316) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1327) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP67910MF_01601317, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601317) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP67910MF_01601317, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601317) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), '')))), '[^-]', ''))) AS ?step2328) .
BIND(((?step2328 + ?targetMotifMatchRegionMatchBeginPositionMF_01601318) - 1) AS ?thisPositionOn93) .
BIND(?thisPositionOn93 AS ?thisPositionOn94) .
BIND(?this AS ?pfs2t329) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfsb89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfse90) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn93, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a88')) AS ?annotation88) .
BIND(?this AS ?pfs87) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch334 faldo:location ?templateMotifSequenceMatchRegionP67910335 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP67910337 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP67910MF_01601330 .
?templateMotifSequenceMatchRegionP67910335 faldo:begin ?templateMotifSequenceMatchBeginP67910336 .
?templateMotifSequenceMatchBeginP67910336 faldo:position ?templateMotifSequenceMatchBeginPositionP67910331 ;
faldo:reference isoform:P67910-1 .
?templateMotifSequenceProfileAlignmentOperationP67910337 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
?targetMotifMatch338 faldo:location ?targetMotifMatchRegionMatch339 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01601341 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP67910MF_01601332 .
?targetMotifMatchRegionMatch339 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01601340 .
?targetMotifMatchRegionMatchBeginMF_01601340 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01601333 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01601341 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP67910MF_01601330, 1, (STRLEN(?templateMotifCigarP67910MF_01601330) - STRLEN(REPLACE(?templateMotifCigarP67910MF_01601330, CONCAT('^(?:-*[^-]){', STR(((170 - ?templateMotifSequenceMatchBeginPositionP67910331) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1342) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP67910MF_01601332, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601332) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP67910MF_01601332, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601332) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), '')))), '[^-]', ''))) AS ?step2343) .
BIND(((?step2343 + ?targetMotifMatchRegionMatchBeginPositionMF_01601333) - 1) AS ?thisPositionOn100) .
BIND(?thisPositionOn100 AS ?thisPositionOn101) .
BIND(?this AS ?pfs2t344) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfsb97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfse98) .
FILTER (REGEX('[VI]', SUBSTR(?thisSequenceValue, ?thisPositionOn100, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a96')) AS ?annotation96) .
BIND(?this AS ?pfs95) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch349 faldo:location ?templateMotifSequenceMatchRegionP67910350 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP67910352 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP67910MF_01601345 .
?templateMotifSequenceMatchRegionP67910350 faldo:begin ?templateMotifSequenceMatchBeginP67910351 .
?templateMotifSequenceMatchBeginP67910351 faldo:position ?templateMotifSequenceMatchBeginPositionP67910346 ;
faldo:reference isoform:P67910-1 .
?templateMotifSequenceProfileAlignmentOperationP67910352 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
?targetMotifMatch353 faldo:location ?targetMotifMatchRegionMatch354 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01601356 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP67910MF_01601347 .
?targetMotifMatchRegionMatch354 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01601355 .
?targetMotifMatchRegionMatchBeginMF_01601355 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01601348 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01601356 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP67910MF_01601345, 1, (STRLEN(?templateMotifCigarP67910MF_01601345) - STRLEN(REPLACE(?templateMotifCigarP67910MF_01601345, CONCAT('^(?:-*[^-]){', STR(((178 - ?templateMotifSequenceMatchBeginPositionP67910346) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1357) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP67910MF_01601347, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601347) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601347, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1357), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP67910MF_01601347, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601347) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601347, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1357), '}'), '')))), '[^-]', ''))) AS ?step2358) .
BIND(((?step2358 + ?targetMotifMatchRegionMatchBeginPositionMF_01601348) - 1) AS ?thisPositionOn107) .
BIND(?thisPositionOn107 AS ?thisPositionOn108) .
BIND(?this AS ?pfs2t359) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn107))) AS ?pfsb104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfse105) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn107, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a103')) AS ?annotation103) .
BIND(?this AS ?pfs102) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch364 faldo:location ?templateMotifSequenceMatchRegionP67910365 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP67910367 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP67910MF_01601360 .
?templateMotifSequenceMatchRegionP67910365 faldo:begin ?templateMotifSequenceMatchBeginP67910366 .
?templateMotifSequenceMatchBeginP67910366 faldo:position ?templateMotifSequenceMatchBeginPositionP67910361 ;
faldo:reference isoform:P67910-1 .
?templateMotifSequenceProfileAlignmentOperationP67910367 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
?targetMotifMatch368 faldo:location ?targetMotifMatchRegionMatch369 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01601371 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP67910MF_01601362 .
?targetMotifMatchRegionMatch369 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01601370 .
?targetMotifMatchRegionMatchBeginMF_01601370 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01601363 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01601371 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP67910MF_01601360, 1, (STRLEN(?templateMotifCigarP67910MF_01601360) - STRLEN(REPLACE(?templateMotifCigarP67910MF_01601360, CONCAT('^(?:-*[^-]){', STR(((180 - ?templateMotifSequenceMatchBeginPositionP67910361) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1372) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP67910MF_01601362, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601362) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601362, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1372), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP67910MF_01601362, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601362) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601362, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1372), '}'), '')))), '[^-]', ''))) AS ?step2373) .
BIND(((?step2373 + ?targetMotifMatchRegionMatchBeginPositionMF_01601363) - 1) AS ?thisPositionOn115) .
BIND(?thisPositionOn115 AS ?thisPositionOn116) .
BIND(?this AS ?pfs2t374) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfsb111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfse112) .
FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn115, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a110')) AS ?annotation110) .
BIND(?this AS ?pfs109) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch379 faldo:location ?templateMotifSequenceMatchRegionP67910380 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP67910382 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP67910MF_01601375 .
?templateMotifSequenceMatchRegionP67910380 faldo:begin ?templateMotifSequenceMatchBeginP67910381 .
?templateMotifSequenceMatchBeginP67910381 faldo:position ?templateMotifSequenceMatchBeginPositionP67910376 ;
faldo:reference isoform:P67910-1 .
?templateMotifSequenceProfileAlignmentOperationP67910382 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
?targetMotifMatch383 faldo:location ?targetMotifMatchRegionMatch384 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01601386 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP67910MF_01601377 .
?targetMotifMatchRegionMatch384 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01601385 .
?targetMotifMatchRegionMatchBeginMF_01601385 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01601378 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01601386 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP67910MF_01601375, 1, (STRLEN(?templateMotifCigarP67910MF_01601375) - STRLEN(REPLACE(?templateMotifCigarP67910MF_01601375, CONCAT('^(?:-*[^-]){', STR(((187 - ?templateMotifSequenceMatchBeginPositionP67910376) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1387) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP67910MF_01601377, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601377) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601377, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1387), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP67910MF_01601377, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601377) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601377, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1387), '}'), '')))), '[^-]', ''))) AS ?step2388) .
BIND(((?step2388 + ?targetMotifMatchRegionMatchBeginPositionMF_01601378) - 1) AS ?thisPositionOn123) .
BIND(?thisPositionOn123 AS ?thisPositionOn124) .
BIND(?this AS ?pfs2t389) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn123))) AS ?pfsb119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn124))) AS ?pfse120) .
FILTER (REGEX('[HKQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn123, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a118')) AS ?annotation118) .
BIND(?this AS ?pfs117) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch394 faldo:location ?templateMotifSequenceMatchRegionP67910395 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP67910397 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP67910MF_01601390 .
?templateMotifSequenceMatchRegionP67910395 faldo:begin ?templateMotifSequenceMatchBeginP67910396 .
?templateMotifSequenceMatchBeginP67910396 faldo:position ?templateMotifSequenceMatchBeginPositionP67910391 ;
faldo:reference isoform:P67910-1 .
?templateMotifSequenceProfileAlignmentOperationP67910397 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
?targetMotifMatch398 faldo:location ?targetMotifMatchRegionMatch399 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01601401 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP67910MF_01601392 .
?targetMotifMatchRegionMatch399 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01601400 .
?targetMotifMatchRegionMatchBeginMF_01601400 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01601393 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01601401 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP67910MF_01601390, 1, (STRLEN(?templateMotifCigarP67910MF_01601390) - STRLEN(REPLACE(?templateMotifCigarP67910MF_01601390, CONCAT('^(?:-*[^-]){', STR(((209 - ?templateMotifSequenceMatchBeginPositionP67910391) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1402) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP67910MF_01601392, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601392) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601392, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1402), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP67910MF_01601392, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601392) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601392, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1402), '}'), '')))), '[^-]', ''))) AS ?step2403) .
BIND(((?step2403 + ?targetMotifMatchRegionMatchBeginPositionMF_01601393) - 1) AS ?thisPositionOn131) .
BIND(?thisPositionOn131 AS ?thisPositionOn132) .
BIND(?this AS ?pfs2t404) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn131))) AS ?pfsb127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn132))) AS ?pfse128) .
FILTER (REGEX('[HR]', SUBSTR(?thisSequenceValue, ?thisPositionOn131, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a126')) AS ?annotation126) .
BIND(?this AS ?pfs125) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch409 faldo:location ?templateMotifSequenceMatchRegionP67910410 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP67910412 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP67910MF_01601405 .
?templateMotifSequenceMatchRegionP67910410 faldo:begin ?templateMotifSequenceMatchBeginP67910411 .
?templateMotifSequenceMatchBeginP67910411 faldo:position ?templateMotifSequenceMatchBeginPositionP67910406 ;
faldo:reference isoform:P67910-1 .
?templateMotifSequenceProfileAlignmentOperationP67910412 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
?targetMotifMatch413 faldo:location ?targetMotifMatchRegionMatch414 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01601416 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP67910MF_01601407 .
?targetMotifMatchRegionMatch414 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01601415 .
?targetMotifMatchRegionMatchBeginMF_01601415 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01601408 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01601416 edam:has_input signature:MF_01601 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP67910MF_01601405, 1, (STRLEN(?templateMotifCigarP67910MF_01601405) - STRLEN(REPLACE(?templateMotifCigarP67910MF_01601405, CONCAT('^(?:-*[^-]){', STR(((272 - ?templateMotifSequenceMatchBeginPositionP67910406) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1417) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP67910MF_01601407, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601407) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601407, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1417), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP67910MF_01601407, 1, (STRLEN(?targetMotifMatchCigarP67910MF_01601407) - STRLEN(REPLACE(?targetMotifMatchCigarP67910MF_01601407, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1417), '}'), '')))), '[^-]', ''))) AS ?step2418) .
BIND(((?step2418 + ?targetMotifMatchRegionMatchBeginPositionMF_01601408) - 1) AS ?thisPositionOn139) .
BIND(?thisPositionOn139 AS ?thisPositionOn140) .
BIND(?this AS ?pfs2t419) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn139))) AS ?pfsb135) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn140))) AS ?pfse136) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn139, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01601a134')) AS ?annotation134) .
BIND(?this AS ?pfs133) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag420) .
}
BIND(IF(BOUND(?tagFT_18), ?caseWithTag420, ?UNBOUND_VARIABLE) AS ?case11) .
}
"xsd:string |
