| http://purl.uniprot.org/unirules/MF_01621#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:587212 up:source unirule:MF_01621 .
_:587213 up:ecName '4.2.1.17' ,
'5.1.2.3' ,
'5.3.3.8' ;
up:fullName 'Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase' ;
rdf:type up:Structured_Name .
_:587214 up:source unirule:MF_01621 .
_:587215 up:ecName '1.1.1.35' ;
up:fullName '3-hydroxyacyl-CoA dehydrogenase' ;
rdf:type up:Structured_Name .
_:587216 up:source unirule:MF_01621 .
_:587217 up:source unirule:MF_01621 .
_:587218 up:source unirule:MF_01621 .
_:587219 up:source unirule:MF_01621 .
_:587220 up:source unirule:MF_01621 .
_:587221 up:source unirule:MF_01621 .
_:587222 up:source unirule:MF_01621 .
_:587223 up:source unirule:MF_01621 .
_:587224 up:source unirule:MF_01621 .
_:587225 up:source unirule:MF_01621 .
_:587226 up:source unirule:MF_01621 .
_:587227 up:source unirule:MF_01621 .
_:587228 up:source unirule:MF_01621 .
_:587229 up:source unirule:MF_01621 .
_:587230 up:source unirule:MF_01621 .
_:587231 up:source unirule:MF_01621 .
_:587232 up:source unirule:MF_01621 .
_:587233 up:source unirule:MF_01621 .
_:587234 up:source unirule:MF_01621 .
_:587235 up:source unirule:MF_01621 .
_:587236 up:source unirule:MF_01621 .
_:587237 up:source unirule:MF_01621 .
_:587238 up:source unirule:MF_01621 .
_:587239 up:source unirule:MF_01621 .
_:587240 up:source unirule:MF_01621 .
_:587241 up:source unirule:MF_01621 .
_:587242 up:source unirule:MF_01621 .
_:587243 up:source unirule:MF_01621 .
_:587244 up:source unirule:MF_01621 .
_:587245 up:source unirule:MF_01621 .
_:587246 up:source unirule:MF_01621 .
_:587247 up:source unirule:MF_01621 .
_:587248 up:source unirule:MF_01621 .
_:587249 up:source unirule:MF_01621 .
_:587250 up:source unirule:MF_01621 .
_:587251 up:source unirule:MF_01621 .
_:587252 up:source unirule:MF_01621 .
_:587253 up:source unirule:MF_01621 .
_:587254 up:source unirule:MF_01621 .
_:587255 up:source unirule:MF_01621 .
_:587256 up:source unirule:MF_01621 .
?this up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation9 ,
?annotation11 ,
?annotation13 ,
?annotation15 ,
?annotation17 ,
?annotation18 ,
?annotation19 ,
?annotation20 ;
up:classifiedWith GO:0003857 ,
GO:0004165 ,
GO:0004300 ,
GO:0006635 ,
GO:0008692 ,
GO:0016042 ,
keyword:276 ,
keyword:413 ,
keyword:442 ,
keyword:443 ,
keyword:456 ,
keyword:511 ,
keyword:520 ,
keyword:560 ;
up:domain ?namedpart1 ,
?namedpart2 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Fatty acid oxidation complex subunit alpha' ;
rdf:type up:Structured_Name .
?namedpart1 up:recommendedName _:587213 .
?namedpart2 up:recommendedName _:587215 .
?gene3 skos:prefLabel 'fadB' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Involved in the aerobic and anaerobic degradation of long-chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:activity ?activity8 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity8 up:catalyticActivity ;
up:enzymeClass .
?annotation9 up:activity ?activity10 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity10 up:catalyticActivity ;
up:enzymeClass .
?annotation11 up:activity ?activity12 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity12 up:catalyticActivity ;
up:enzymeClass .
?annotation13 up:activity ?activity14 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity14 up:catalyticActivity ;
up:enzymeClass .
?annotation15 up:activity ?activity16 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity16 up:catalyticActivity ;
up:enzymeClass .
?annotation17 a up:Pathway_Annotation ;
rdfs:comment 'Lipid metabolism; fatty acid beta-oxidation.' .
?annotation18 a up:Subunit_Annotation ;
rdfs:comment 'Heterotetramer of two alpha chains (FadB) and two beta chains (FadA).' .
?annotation19 a up:Similarity_Annotation ;
rdfs:comment 'In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.' .
?annotation20 a up:Similarity_Annotation ;
rdfs:comment 'In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.' .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Enoyl-CoA hydratase/isomerase' .
?pfsb23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
rdf:type up:Region_Annotation ;
rdfs:comment '3-hydroxyacyl-CoA dehydrogenase' .
?pfsb29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:57540 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'For 3-hydroxyacyl-CoA dehydrogenase activity' .
?pfsb42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf ?molecule51 .
?molecule51 rdfs:label 'substrate' .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:57540 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf chebi:57540 .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf chebi:57540 .
?pfs75 up:annotation ?annotation76 .
?annotation76 faldo:begin ?pfsb77 ;
faldo:end ?pfse78 ;
up:ligand ?ligand79 ;
rdf:type up:Binding_Site_Annotation .
?pfsb77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?ligand79 rdfs:subClassOf chebi:57540 .
?pfs82 up:annotation ?annotation83 .
?annotation83 faldo:begin ?pfsb84 ;
faldo:end ?pfse85 ;
up:ligand ?ligand86 ;
rdf:type up:Binding_Site_Annotation .
?pfsb84 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfse85 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?ligand86 rdfs:subClassOf chebi:57540 .
?pfs89 up:annotation ?annotation90 .
?annotation90 faldo:begin ?pfsb91 ;
faldo:end ?pfse92 ;
up:ligand ?ligand93 ;
rdf:type up:Binding_Site_Annotation .
?pfsb91 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?pfse92 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?ligand93 rdfs:subClassOf ?molecule94 .
?molecule94 rdfs:label 'substrate' .
?pfs97 up:annotation ?annotation98 .
?annotation98 faldo:begin ?pfsb99 ;
faldo:end ?pfse100 ;
up:ligand ?ligand101 ;
rdf:type up:Binding_Site_Annotation .
?pfsb99 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfse100 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
?ligand101 rdfs:subClassOf ?molecule102 .
?molecule102 rdfs:label 'substrate' .
?pfs105 up:annotation ?annotation106 .
?annotation106 faldo:begin ?pfsb107 ;
faldo:end ?pfse108 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for catalytic activity' .
?pfsb107 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?pfse108 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?pfs111 up:annotation ?annotation112 .
?annotation112 faldo:begin ?pfsb113 ;
faldo:end ?pfse114 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for catalytic activity' .
?pfsb113 faldo:position ?thisPositionOn115 ;
rdf:type faldo:ExactPosition .
?pfse114 faldo:position ?thisPositionOn116 ;
rdf:type faldo:ExactPosition .
_:587257 a rdf:Statement ;
up:attribution _:587212 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:587258 a rdf:Statement ;
up:attribution _:587214 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart1 .
_:587259 a rdf:Statement ;
up:attribution _:587216 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart2 .
_:587260 a rdf:Statement ;
up:attribution _:587217 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:587261 a rdf:Statement ;
up:attribution _:587218 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:587262 a rdf:Statement ;
up:attribution _:587219 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:587263 a rdf:Statement ;
up:attribution _:587220 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:587264 a rdf:Statement ;
up:attribution _:587221 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:587265 a rdf:Statement ;
up:attribution _:587222 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:587266 a rdf:Statement ;
up:attribution _:587223 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:587267 a rdf:Statement ;
up:attribution _:587224 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:587268 a rdf:Statement ;
up:attribution _:587225 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:587269 a rdf:Statement ;
up:attribution _:587226 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:587270 a rdf:Statement ;
up:attribution _:587227 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:587271 a rdf:Statement ;
up:attribution _:587228 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:587272 a rdf:Statement ;
up:attribution _:587229 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:276 .
_:587273 a rdf:Statement ;
up:attribution _:587230 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:587274 a rdf:Statement ;
up:attribution _:587231 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:442 .
_:587275 a rdf:Statement ;
up:attribution _:587232 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:443 .
_:587276 a rdf:Statement ;
up:attribution _:587233 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:587277 a rdf:Statement ;
up:attribution _:587234 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:511 .
_:587278 a rdf:Statement ;
up:attribution _:587235 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:587279 a rdf:Statement ;
up:attribution _:587236 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:587280 a rdf:Statement ;
up:attribution _:587237 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003857 .
_:587281 a rdf:Statement ;
up:attribution _:587238 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004165 .
_:587282 a rdf:Statement ;
up:attribution _:587239 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004300 .
_:587283 a rdf:Statement ;
up:attribution _:587240 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008692 .
_:587284 a rdf:Statement ;
up:attribution _:587241 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006635 .
_:587285 a rdf:Statement ;
up:attribution _:587242 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016042 .
_:587286 a rdf:Statement ;
up:source unirule:MF_01621 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:587287 a rdf:Statement ;
up:attribution _:587243 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:587288 a rdf:Statement ;
up:source unirule:MF_01621 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:587289 a rdf:Statement ;
up:attribution _:587244 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:587290 a rdf:Statement ;
up:source unirule:MF_01621 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:587291 a rdf:Statement ;
up:attribution _:587245 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:587292 a rdf:Statement ;
up:source unirule:MF_01621 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:587293 a rdf:Statement ;
up:attribution _:587246 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:587294 a rdf:Statement ;
up:source unirule:MF_01621 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:587295 a rdf:Statement ;
up:attribution _:587247 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:587296 a rdf:Statement ;
up:source unirule:MF_01621 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:587297 a rdf:Statement ;
up:attribution _:587248 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:587298 a rdf:Statement ;
up:source unirule:MF_01621 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:587299 a rdf:Statement ;
up:attribution _:587249 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:587300 a rdf:Statement ;
up:source unirule:MF_01621 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:587301 a rdf:Statement ;
up:attribution _:587250 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:587302 a rdf:Statement ;
up:source unirule:MF_01621 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:587303 a rdf:Statement ;
up:attribution _:587251 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:587304 a rdf:Statement ;
up:source unirule:MF_01621 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:587305 a rdf:Statement ;
up:attribution _:587252 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:587306 a rdf:Statement ;
up:source unirule:MF_01621 ;
rdf:subject ?pfs89 ;
rdf:predicate up:annotation ;
rdf:object ?annotation90 .
_:587307 a rdf:Statement ;
up:attribution _:587253 ;
rdf:subject ?pfs89 ;
rdf:predicate up:annotation ;
rdf:object ?annotation90 .
_:587308 a rdf:Statement ;
up:source unirule:MF_01621 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:587309 a rdf:Statement ;
up:attribution _:587254 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:587310 a rdf:Statement ;
up:source unirule:MF_01621 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:587311 a rdf:Statement ;
up:attribution _:587255 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:587312 a rdf:Statement ;
up:source unirule:MF_01621 ;
rdf:subject ?pfs111 ;
rdf:predicate up:annotation ;
rdf:object ?annotation112 .
_:587313 a rdf:Statement ;
up:attribution _:587256 ;
rdf:subject ?pfs111 ;
rdf:predicate up:annotation ;
rdf:object ?annotation112 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01621
#Rule MF_01621 Created by:? on:2005-11-18 Modified by:Catherine Rivoire on:2025-09-18
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01621 .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(URI(CONCAT(STR(?this), '#MF_01621a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a1')) AS ?namedpart1) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a2')) AS ?namedpart2) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a13')) AS ?annotation13) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a15')) AS ?annotation15) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a17')) AS ?annotation17) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a18')) AS ?annotation18) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a19')) AS ?annotation19) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a20')) AS ?annotation20) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionP28793122 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28793124 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28793MF_01621117 .
?templateMotifSequenceMatchRegionP28793122 faldo:begin ?templateMotifSequenceMatchBeginP28793123 .
?templateMotifSequenceMatchBeginP28793123 faldo:position ?templateMotifSequenceMatchBeginPositionP28793118 ;
faldo:reference isoform:P28793-1 .
?templateMotifSequenceProfileAlignmentOperationP28793124 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01621128 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28793MF_01621119 .
?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01621127 .
?targetMotifMatchRegionMatchBeginMF_01621127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01621120 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01621128 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn25) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28793MF_01621117, 1, (STRLEN(?templateMotifCigarP28793MF_01621117) - STRLEN(REPLACE(?templateMotifCigarP28793MF_01621117, CONCAT('^(?:-*[^-]){', STR(((190 - ?templateMotifSequenceMatchBeginPositionP28793118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28793MF_01621119, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621119) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28793MF_01621119, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621119) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) .
BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_01621120) - 1) AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse24) .
FILTER ((BOUND(?thisPositionOn25) && BOUND(?thisPositionOn26))) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionP28793137 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28793139 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28793MF_01621132 .
?templateMotifSequenceMatchRegionP28793137 faldo:begin ?templateMotifSequenceMatchBeginP28793138 .
?templateMotifSequenceMatchBeginP28793138 faldo:position ?templateMotifSequenceMatchBeginPositionP28793133 ;
faldo:reference isoform:P28793-1 .
?templateMotifSequenceProfileAlignmentOperationP28793139 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01621143 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28793MF_01621134 .
?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01621142 .
?targetMotifMatchRegionMatchBeginMF_01621142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01621135 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01621143 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28793MF_01621132, 1, (STRLEN(?templateMotifCigarP28793MF_01621132) - STRLEN(REPLACE(?templateMotifCigarP28793MF_01621132, CONCAT('^(?:-*[^-]){', STR(((312 - ?templateMotifSequenceMatchBeginPositionP28793133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28793MF_01621134, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621134) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28793MF_01621134, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621134) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_01621135) - 1) AS ?thisPositionOn31) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t146) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse30) .
FILTER ((BOUND(?thisPositionOn31) && BOUND(?thisPositionOn32))) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch151 faldo:location ?templateMotifSequenceMatchRegionP28793152 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28793154 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28793MF_01621147 .
?templateMotifSequenceMatchRegionP28793152 faldo:begin ?templateMotifSequenceMatchBeginP28793153 .
?templateMotifSequenceMatchBeginP28793153 faldo:position ?templateMotifSequenceMatchBeginPositionP28793148 ;
faldo:reference isoform:P28793-1 .
?templateMotifSequenceProfileAlignmentOperationP28793154 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
?targetMotifMatch155 faldo:location ?targetMotifMatchRegionMatch156 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01621158 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28793MF_01621149 .
?targetMotifMatchRegionMatch156 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01621157 .
?targetMotifMatchRegionMatchBeginMF_01621157 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01621150 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01621158 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28793MF_01621147, 1, (STRLEN(?templateMotifCigarP28793MF_01621147) - STRLEN(REPLACE(?templateMotifCigarP28793MF_01621147, CONCAT('^(?:-*[^-]){', STR(((401 - ?templateMotifSequenceMatchBeginPositionP28793148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28793MF_01621149, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621149) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28793MF_01621149, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621149) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1159), '}'), '')))), '[^-]', ''))) AS ?step2160) .
BIND(((?step2160 + ?targetMotifMatchRegionMatchBeginPositionMF_01621150) - 1) AS ?thisPositionOn38) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28793MF_01621147, 1, (STRLEN(?templateMotifCigarP28793MF_01621147) - STRLEN(REPLACE(?templateMotifCigarP28793MF_01621147, CONCAT('^(?:-*[^-]){', STR(((403 - ?templateMotifSequenceMatchBeginPositionP28793148) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28793MF_01621149, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621149) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28793MF_01621149, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621149) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621149, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1161), '}'), '')))), '[^-]', ''))) AS ?step2162) .
BIND(((?step2162 + ?targetMotifMatchRegionMatchBeginPositionMF_01621150) - 1) AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t163) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER (REGEX('[VI][VT]E', SUBSTR(?thisSequenceValue, ?thisPositionOn38, (?thisPositionOn39 - ?thisPositionOn38)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch168 faldo:location ?templateMotifSequenceMatchRegionP28793169 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28793171 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28793MF_01621164 .
?templateMotifSequenceMatchRegionP28793169 faldo:begin ?templateMotifSequenceMatchBeginP28793170 .
?templateMotifSequenceMatchBeginP28793170 faldo:position ?templateMotifSequenceMatchBeginPositionP28793165 ;
faldo:reference isoform:P28793-1 .
?templateMotifSequenceProfileAlignmentOperationP28793171 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
?targetMotifMatch172 faldo:location ?targetMotifMatchRegionMatch173 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01621175 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28793MF_01621166 .
?targetMotifMatchRegionMatch173 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01621174 .
?targetMotifMatchRegionMatchBeginMF_01621174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01621167 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01621175 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28793MF_01621164, 1, (STRLEN(?templateMotifCigarP28793MF_01621164) - STRLEN(REPLACE(?templateMotifCigarP28793MF_01621164, CONCAT('^(?:-*[^-]){', STR(((451 - ?templateMotifSequenceMatchBeginPositionP28793165) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28793MF_01621166, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621166) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28793MF_01621166, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621166) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1176), '}'), '')))), '[^-]', ''))) AS ?step2177) .
BIND(((?step2177 + ?targetMotifMatchRegionMatchBeginPositionMF_01621167) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t178) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch183 faldo:location ?templateMotifSequenceMatchRegionP28793184 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28793186 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28793MF_01621179 .
?templateMotifSequenceMatchRegionP28793184 faldo:begin ?templateMotifSequenceMatchBeginP28793185 .
?templateMotifSequenceMatchBeginP28793185 faldo:position ?templateMotifSequenceMatchBeginPositionP28793180 ;
faldo:reference isoform:P28793-1 .
?templateMotifSequenceProfileAlignmentOperationP28793186 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
?targetMotifMatch187 faldo:location ?targetMotifMatchRegionMatch188 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01621190 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28793MF_01621181 .
?targetMotifMatchRegionMatch188 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01621189 .
?targetMotifMatchRegionMatchBeginMF_01621189 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01621182 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01621190 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28793MF_01621179, 1, (STRLEN(?templateMotifCigarP28793MF_01621179) - STRLEN(REPLACE(?templateMotifCigarP28793MF_01621179, CONCAT('^(?:-*[^-]){', STR(((297 - ?templateMotifSequenceMatchBeginPositionP28793180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28793MF_01621181, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621181) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28793MF_01621181, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621181) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1191), '}'), '')))), '[^-]', ''))) AS ?step2192) .
BIND(((?step2192 + ?targetMotifMatchRegionMatchBeginPositionMF_01621182) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t193) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch198 faldo:location ?templateMotifSequenceMatchRegionP28793199 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28793201 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28793MF_01621194 .
?templateMotifSequenceMatchRegionP28793199 faldo:begin ?templateMotifSequenceMatchBeginP28793200 .
?templateMotifSequenceMatchBeginP28793200 faldo:position ?templateMotifSequenceMatchBeginPositionP28793195 ;
faldo:reference isoform:P28793-1 .
?templateMotifSequenceProfileAlignmentOperationP28793201 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
?targetMotifMatch202 faldo:location ?targetMotifMatchRegionMatch203 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01621205 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28793MF_01621196 .
?targetMotifMatchRegionMatch203 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01621204 .
?targetMotifMatchRegionMatchBeginMF_01621204 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01621197 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01621205 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28793MF_01621194, 1, (STRLEN(?templateMotifCigarP28793MF_01621194) - STRLEN(REPLACE(?templateMotifCigarP28793MF_01621194, CONCAT('^(?:-*[^-]){', STR(((325 - ?templateMotifSequenceMatchBeginPositionP28793195) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1206) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28793MF_01621196, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621196) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28793MF_01621196, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621196) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1206), '}'), '')))), '[^-]', ''))) AS ?step2207) .
BIND(((?step2207 + ?targetMotifMatchRegionMatchBeginPositionMF_01621197) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t208) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch213 faldo:location ?templateMotifSequenceMatchRegionP28793214 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28793216 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28793MF_01621209 .
?templateMotifSequenceMatchRegionP28793214 faldo:begin ?templateMotifSequenceMatchBeginP28793215 .
?templateMotifSequenceMatchBeginP28793215 faldo:position ?templateMotifSequenceMatchBeginPositionP28793210 ;
faldo:reference isoform:P28793-1 .
?templateMotifSequenceProfileAlignmentOperationP28793216 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
?targetMotifMatch217 faldo:location ?targetMotifMatchRegionMatch218 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01621220 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28793MF_01621211 .
?targetMotifMatchRegionMatch218 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01621219 .
?targetMotifMatchRegionMatchBeginMF_01621219 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01621212 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01621220 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28793MF_01621209, 1, (STRLEN(?templateMotifCigarP28793MF_01621209) - STRLEN(REPLACE(?templateMotifCigarP28793MF_01621209, CONCAT('^(?:-*[^-]){', STR(((344 - ?templateMotifSequenceMatchBeginPositionP28793210) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1221) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28793MF_01621211, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621211) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28793MF_01621211, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621211) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621211, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1221), '}'), '')))), '[^-]', ''))) AS ?step2222) .
BIND(((?step2222 + ?targetMotifMatchRegionMatchBeginPositionMF_01621212) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t223) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch228 faldo:location ?templateMotifSequenceMatchRegionP28793229 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28793231 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28793MF_01621224 .
?templateMotifSequenceMatchRegionP28793229 faldo:begin ?templateMotifSequenceMatchBeginP28793230 .
?templateMotifSequenceMatchBeginP28793230 faldo:position ?templateMotifSequenceMatchBeginPositionP28793225 ;
faldo:reference isoform:P28793-1 .
?templateMotifSequenceProfileAlignmentOperationP28793231 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
?targetMotifMatch232 faldo:location ?targetMotifMatchRegionMatch233 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01621235 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28793MF_01621226 .
?targetMotifMatchRegionMatch233 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01621234 .
?targetMotifMatchRegionMatchBeginMF_01621234 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01621227 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01621235 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28793MF_01621224, 1, (STRLEN(?templateMotifCigarP28793MF_01621224) - STRLEN(REPLACE(?templateMotifCigarP28793MF_01621224, CONCAT('^(?:-*[^-]){', STR(((408 - ?templateMotifSequenceMatchBeginPositionP28793225) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1236) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28793MF_01621226, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621226) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621226, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28793MF_01621226, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621226) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621226, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), '')))), '[^-]', ''))) AS ?step2237) .
BIND(((?step2237 + ?targetMotifMatchRegionMatchBeginPositionMF_01621227) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs1t238) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch243 faldo:location ?templateMotifSequenceMatchRegionP28793244 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28793246 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28793MF_01621239 .
?templateMotifSequenceMatchRegionP28793244 faldo:begin ?templateMotifSequenceMatchBeginP28793245 .
?templateMotifSequenceMatchBeginP28793245 faldo:position ?templateMotifSequenceMatchBeginPositionP28793240 ;
faldo:reference isoform:P28793-1 .
?templateMotifSequenceProfileAlignmentOperationP28793246 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
?targetMotifMatch247 faldo:location ?targetMotifMatchRegionMatch248 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01621250 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28793MF_01621241 .
?targetMotifMatchRegionMatch248 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01621249 .
?targetMotifMatchRegionMatchBeginMF_01621249 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01621242 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01621250 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28793MF_01621239, 1, (STRLEN(?templateMotifCigarP28793MF_01621239) - STRLEN(REPLACE(?templateMotifCigarP28793MF_01621239, CONCAT('^(?:-*[^-]){', STR(((430 - ?templateMotifSequenceMatchBeginPositionP28793240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1251) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28793MF_01621241, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621241) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28793MF_01621241, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621241) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), '')))), '[^-]', ''))) AS ?step2252) .
BIND(((?step2252 + ?targetMotifMatchRegionMatchBeginPositionMF_01621242) - 1) AS ?thisPositionOn80) .
BIND(?thisPositionOn80 AS ?thisPositionOn81) .
BIND(?this AS ?pfs1t253) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse78) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch258 faldo:location ?templateMotifSequenceMatchRegionP28793259 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28793261 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28793MF_01621254 .
?templateMotifSequenceMatchRegionP28793259 faldo:begin ?templateMotifSequenceMatchBeginP28793260 .
?templateMotifSequenceMatchBeginP28793260 faldo:position ?templateMotifSequenceMatchBeginPositionP28793255 ;
faldo:reference isoform:P28793-1 .
?templateMotifSequenceProfileAlignmentOperationP28793261 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
?targetMotifMatch262 faldo:location ?targetMotifMatchRegionMatch263 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01621265 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28793MF_01621256 .
?targetMotifMatchRegionMatch263 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01621264 .
?targetMotifMatchRegionMatchBeginMF_01621264 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01621257 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01621265 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28793MF_01621254, 1, (STRLEN(?templateMotifCigarP28793MF_01621254) - STRLEN(REPLACE(?templateMotifCigarP28793MF_01621254, CONCAT('^(?:-*[^-]){', STR(((454 - ?templateMotifSequenceMatchBeginPositionP28793255) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1266) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28793MF_01621256, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621256) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621256, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1266), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28793MF_01621256, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621256) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621256, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1266), '}'), '')))), '[^-]', ''))) AS ?step2267) .
BIND(((?step2267 + ?targetMotifMatchRegionMatchBeginPositionMF_01621257) - 1) AS ?thisPositionOn87) .
BIND(?thisPositionOn87 AS ?thisPositionOn88) .
BIND(?this AS ?pfs1t268) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse85) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch273 faldo:location ?templateMotifSequenceMatchRegionP28793274 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28793276 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28793MF_01621269 .
?templateMotifSequenceMatchRegionP28793274 faldo:begin ?templateMotifSequenceMatchBeginP28793275 .
?templateMotifSequenceMatchBeginP28793275 faldo:position ?templateMotifSequenceMatchBeginPositionP28793270 ;
faldo:reference isoform:P28793-1 .
?templateMotifSequenceProfileAlignmentOperationP28793276 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
?targetMotifMatch277 faldo:location ?targetMotifMatchRegionMatch278 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01621280 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28793MF_01621271 .
?targetMotifMatchRegionMatch278 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01621279 .
?targetMotifMatchRegionMatchBeginMF_01621279 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01621272 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01621280 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28793MF_01621269, 1, (STRLEN(?templateMotifCigarP28793MF_01621269) - STRLEN(REPLACE(?templateMotifCigarP28793MF_01621269, CONCAT('^(?:-*[^-]){', STR(((501 - ?templateMotifSequenceMatchBeginPositionP28793270) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1281) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28793MF_01621271, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621271) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621271, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1281), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28793MF_01621271, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621271) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621271, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1281), '}'), '')))), '[^-]', ''))) AS ?step2282) .
BIND(((?step2282 + ?targetMotifMatchRegionMatchBeginPositionMF_01621272) - 1) AS ?thisPositionOn95) .
BIND(?thisPositionOn95 AS ?thisPositionOn96) .
BIND(?this AS ?pfs1t283) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfsb91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfse92) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn95, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a90')) AS ?annotation90) .
BIND(?this AS ?pfs89) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch288 faldo:location ?templateMotifSequenceMatchRegionP28793289 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28793291 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28793MF_01621284 .
?templateMotifSequenceMatchRegionP28793289 faldo:begin ?templateMotifSequenceMatchBeginP28793290 .
?templateMotifSequenceMatchBeginP28793290 faldo:position ?templateMotifSequenceMatchBeginPositionP28793285 ;
faldo:reference isoform:P28793-1 .
?templateMotifSequenceProfileAlignmentOperationP28793291 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
?targetMotifMatch292 faldo:location ?targetMotifMatchRegionMatch293 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01621295 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28793MF_01621286 .
?targetMotifMatchRegionMatch293 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01621294 .
?targetMotifMatchRegionMatchBeginMF_01621294 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01621287 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01621295 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28793MF_01621284, 1, (STRLEN(?templateMotifCigarP28793MF_01621284) - STRLEN(REPLACE(?templateMotifCigarP28793MF_01621284, CONCAT('^(?:-*[^-]){', STR(((660 - ?templateMotifSequenceMatchBeginPositionP28793285) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1296) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28793MF_01621286, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621286) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621286, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1296), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28793MF_01621286, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621286) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621286, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1296), '}'), '')))), '[^-]', ''))) AS ?step2297) .
BIND(((?step2297 + ?targetMotifMatchRegionMatchBeginPositionMF_01621287) - 1) AS ?thisPositionOn103) .
BIND(?thisPositionOn103 AS ?thisPositionOn104) .
BIND(?this AS ?pfs1t298) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse100) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn103, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a98')) AS ?annotation98) .
BIND(?this AS ?pfs97) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch303 faldo:location ?templateMotifSequenceMatchRegionP28793304 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28793306 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28793MF_01621299 .
?templateMotifSequenceMatchRegionP28793304 faldo:begin ?templateMotifSequenceMatchBeginP28793305 .
?templateMotifSequenceMatchBeginP28793305 faldo:position ?templateMotifSequenceMatchBeginPositionP28793300 ;
faldo:reference isoform:P28793-1 .
?templateMotifSequenceProfileAlignmentOperationP28793306 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
?targetMotifMatch307 faldo:location ?targetMotifMatchRegionMatch308 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01621310 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28793MF_01621301 .
?targetMotifMatchRegionMatch308 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01621309 .
?targetMotifMatchRegionMatchBeginMF_01621309 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01621302 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01621310 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28793MF_01621299, 1, (STRLEN(?templateMotifCigarP28793MF_01621299) - STRLEN(REPLACE(?templateMotifCigarP28793MF_01621299, CONCAT('^(?:-*[^-]){', STR(((120 - ?templateMotifSequenceMatchBeginPositionP28793300) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1311) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28793MF_01621301, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621301) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621301, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1311), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28793MF_01621301, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621301) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621301, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1311), '}'), '')))), '[^-]', ''))) AS ?step2312) .
BIND(((?step2312 + ?targetMotifMatchRegionMatchBeginPositionMF_01621302) - 1) AS ?thisPositionOn109) .
BIND(?thisPositionOn109 AS ?thisPositionOn110) .
BIND(?this AS ?pfs1t313) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfsb107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfse108) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn109, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a106')) AS ?annotation106) .
BIND(?this AS ?pfs105) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch318 faldo:location ?templateMotifSequenceMatchRegionP28793319 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP28793321 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP28793MF_01621314 .
?templateMotifSequenceMatchRegionP28793319 faldo:begin ?templateMotifSequenceMatchBeginP28793320 .
?templateMotifSequenceMatchBeginP28793320 faldo:position ?templateMotifSequenceMatchBeginPositionP28793315 ;
faldo:reference isoform:P28793-1 .
?templateMotifSequenceProfileAlignmentOperationP28793321 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
?targetMotifMatch322 faldo:location ?targetMotifMatchRegionMatch323 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01621325 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP28793MF_01621316 .
?targetMotifMatchRegionMatch323 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01621324 .
?targetMotifMatchRegionMatchBeginMF_01621324 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01621317 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01621325 edam:has_input signature:MF_01621 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP28793MF_01621314, 1, (STRLEN(?templateMotifCigarP28793MF_01621314) - STRLEN(REPLACE(?templateMotifCigarP28793MF_01621314, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP28793315) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1326) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP28793MF_01621316, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621316) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621316, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1326), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP28793MF_01621316, 1, (STRLEN(?targetMotifMatchCigarP28793MF_01621316) - STRLEN(REPLACE(?targetMotifMatchCigarP28793MF_01621316, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1326), '}'), '')))), '[^-]', ''))) AS ?step2327) .
BIND(((?step2327 + ?targetMotifMatchRegionMatchBeginPositionMF_01621317) - 1) AS ?thisPositionOn115) .
BIND(?thisPositionOn115 AS ?thisPositionOn116) .
BIND(?this AS ?pfs1t328) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfsb113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfse114) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn115, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01621a112')) AS ?annotation112) .
BIND(?this AS ?pfs111) .
}
}
"xsd:string |
