| http://purl.uniprot.org/unirules/MF_01976#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:695222 up:source unirule:MF_01976 .
_:695223 up:source unirule:MF_01976 .
_:695224 up:source unirule:MF_01976 .
_:695225 up:source unirule:MF_01976 .
_:695226 up:source unirule:MF_01976 .
_:695227 up:source unirule:MF_01976 .
_:695228 up:source unirule:MF_01976 .
_:695229 up:source unirule:MF_01976 .
_:695230 up:source unirule:MF_01976 .
_:695231 up:source unirule:MF_01976 .
_:695232 up:source unirule:MF_01976 .
_:695233 up:source unirule:MF_01976 .
_:695234 up:source unirule:MF_01976 .
_:695235 up:source unirule:MF_01976 .
_:695236 up:source unirule:MF_01976 .
_:695237 up:source unirule:MF_01976 .
_:695238 up:source unirule:MF_01976 .
_:695239 up:source unirule:MF_01976 .
_:695240 up:source unirule:MF_01976 .
_:695241 up:source unirule:MF_01976 .
_:695242 up:source unirule:MF_01976 .
_:695243 up:source unirule:MF_01976 .
_:695244 up:source unirule:MF_01976 .
_:695245 up:source unirule:MF_01976 .
_:695246 up:source unirule:MF_01976 .
_:695247 up:source unirule:MF_01976 .
_:695248 up:source unirule:MF_01976 .
_:695249 up:source unirule:MF_01976 .
_:695250 up:source unirule:MF_01976 .
_:695251 up:source unirule:MF_01976 .
_:695252 up:source unirule:MF_01976 .
_:695253 up:source unirule:MF_01976 .
_:695254 up:source unirule:MF_01976 .
_:695255 up:source unirule:MF_01976 .
_:695256 up:source unirule:MF_01976 .
_:695257 up:source unirule:MF_01976 .
_:695258 up:source unirule:MF_01976 .
_:695259 up:source unirule:MF_01976 .
?this up:annotation ?annotation0 ,
?annotation1 ,
?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0003872 ,
GO:0005737 ,
GO:0006096 ,
keyword:324 ,
keyword:418 ,
keyword:460 ,
keyword:479 ,
keyword:808 ,
keyword:963 .
?annotation0 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation1 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 3/4.' .
?annotation2 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer or homotetramer.' .
?annotation3 a up:Subcellular_Location_Annotation .
?annotation3li4 up:cellularComponent .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the phosphofructokinase type A (PFKA) family. Mixed-substrate PFK group III subfamily.' .
?case6 up:classifiedWith keyword:547 ,
keyword:67 .
?case7 up:alternativeName ?name9 ,
?name10 ,
?name11 ;
up:recommendedName ?name8 .
?name8 up:ecName '2.7.1.90' ;
up:fullName 'Pyrophosphate--fructose 6-phosphate 1-phosphotransferase' ;
rdf:type up:Structured_Name .
?name9 up:fullName '6-phosphofructokinase, pyrophosphate dependent' ;
rdf:type up:Structured_Name .
?name10 up:fullName 'PPi-dependent phosphofructokinase' ;
up:shortName 'PPi-PFK' ;
rdf:type up:Structured_Name .
?name11 up:fullName 'Pyrophosphate-dependent 6-phosphofructose-1-kinase' ;
rdf:type up:Structured_Name .
?case12 up:alternativeName ?name14 ;
up:recommendedName ?name13 .
?name13 up:ecName '2.7.1.11' ;
up:fullName 'ATP-dependent 6-phosphofructokinase' ;
up:shortName 'ATP-PFK' ,
'Phosphofructokinase' ;
rdf:type up:Structured_Name .
?name14 up:fullName 'Phosphohexokinase' ;
rdf:type up:Structured_Name .
?case15 up:recommendedName ?name16 .
?name16 up:ecName '2.7.1.-' ;
up:fullName '6-phosphofructokinase' ;
rdf:type up:Structured_Name .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for substrate specificity; cannot use PPi as phosphoryl donor' .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for catalytic activity and substrate specificity; stabilizes the transition state when the phosphoryl donor is PPi; prevents ATP from binding by mimicking the alpha-phosphate group of ATP' .
?pfsb25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb31 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf ?molecule34 .
?molecule34 rdfs:label 'substrate' .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb39 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf ?molecule42 .
?molecule42 rdfs:label 'substrate' .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb47 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf ?molecule50 .
?molecule50 rdfs:label 'substrate' .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb55 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfs59 up:annotation ?annotation60 .
?annotation60 faldo:begin ?pfsb61 ;
faldo:end ?pfse62 ;
up:ligand ?ligand63 ;
rdf:type up:Binding_Site_Annotation .
?pfsb61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse62 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand63 rdfs:subClassOf chebi:18420 .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
up:ligand ?ligand70 ;
rdf:type up:Binding_Site_Annotation .
?pfsb68 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?ligand70 rdfs:subClassOf ?molecule71 .
?molecule71 rdfs:label 'substrate' .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
up:ligand ?ligand78 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb76 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?ligand78 rdfs:subClassOf ?molecule79 .
?molecule79 rdfs:label 'substrate' .
?pfs82 up:annotation ?annotation83 .
?annotation83 faldo:begin ?pfsb84 ;
faldo:end ?pfse85 ;
up:ligand ?ligand86 ;
rdf:type up:Binding_Site_Annotation .
?pfsb84 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?pfse85 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?ligand86 rdfs:subClassOf ?molecule87 .
?molecule87 rdfs:label 'substrate' .
?pfs90 up:annotation ?annotation91 .
?annotation91 faldo:begin ?pfsb92 ;
faldo:end ?pfse93 ;
up:ligand ?ligand94 ;
rdf:type up:Binding_Site_Annotation .
?pfsb92 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?pfse93 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?ligand94 rdfs:subClassOf chebi:30616 .
?pfs97 up:annotation ?annotation98 .
?annotation98 faldo:begin ?pfsb99 ;
faldo:end ?pfse100 ;
up:ligand ?ligand101 ;
rdf:type up:Binding_Site_Annotation .
?pfsb99 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?pfse100 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?ligand101 rdfs:subClassOf chebi:30616 .
?pfs104 up:annotation ?annotation105 .
?annotation105 faldo:begin ?pfsb106 ;
faldo:end ?pfse107 ;
up:ligand ?ligand108 ;
rdf:type up:Binding_Site_Annotation .
?pfsb106 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?pfse107 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?ligand108 rdfs:subClassOf chebi:30616 .
?pfs111 up:annotation ?annotation112 .
?annotation112 faldo:begin ?pfsb113 ;
faldo:end ?pfse114 ;
up:ligand ?ligand115 ;
rdf:type up:Binding_Site_Annotation .
?pfsb113 faldo:position ?thisPositionOn116 ;
rdf:type faldo:ExactPosition .
?pfse114 faldo:position ?thisPositionOn117 ;
rdf:type faldo:ExactPosition .
?ligand115 rdfs:subClassOf chebi:33019 .
?pfs118 up:annotation ?annotation119 .
?annotation119 faldo:begin ?pfsb120 ;
faldo:end ?pfse121 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for catalytic activity; stabilizes the transition state when the phosphoryl donor is PPi' .
?pfsb120 faldo:position ?thisPositionOn122 ;
rdf:type faldo:ExactPosition .
?pfse121 faldo:position ?thisPositionOn123 ;
rdf:type faldo:ExactPosition .
_:695260 a rdf:Statement ;
up:attribution _:695222 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:695261 a rdf:Statement ;
up:attribution _:695223 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:695262 a rdf:Statement ;
up:attribution _:695224 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:695263 a rdf:Statement ;
up:attribution _:695225 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:695264 a rdf:Statement ;
up:attribution _:695226 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:695265 a rdf:Statement ;
up:attribution _:695227 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:695266 a rdf:Statement ;
up:attribution _:695228 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:695267 a rdf:Statement ;
up:attribution _:695229 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:695268 a rdf:Statement ;
up:attribution _:695230 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:324 .
_:695269 a rdf:Statement ;
up:attribution _:695231 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:695270 a rdf:Statement ;
up:attribution _:695232 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:695271 a rdf:Statement ;
up:attribution _:695233 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003872 .
_:695272 a rdf:Statement ;
up:attribution _:695234 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006096 .
_:695273 a rdf:Statement ;
up:attribution _:695235 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:695274 a rdf:Statement ;
up:attribution _:695236 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:695275 a rdf:Statement ;
up:attribution _:695237 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:695276 a rdf:Statement ;
up:attribution _:695238 ;
rdf:subject ?case7 ;
rdf:predicate up:recommendedName ;
rdf:object ?name8 .
_:695277 a rdf:Statement ;
up:attribution _:695239 ;
rdf:subject ?case7 ;
rdf:predicate up:alternativeName ;
rdf:object ?name9 .
_:695278 a rdf:Statement ;
up:attribution _:695240 ;
rdf:subject ?case7 ;
rdf:predicate up:alternativeName ;
rdf:object ?name10 .
_:695279 a rdf:Statement ;
up:attribution _:695241 ;
rdf:subject ?case7 ;
rdf:predicate up:alternativeName ;
rdf:object ?name11 .
_:695280 a rdf:Statement ;
up:attribution _:695242 ;
rdf:subject ?case12 ;
rdf:predicate up:recommendedName ;
rdf:object ?name13 .
_:695281 a rdf:Statement ;
up:attribution _:695243 ;
rdf:subject ?case12 ;
rdf:predicate up:alternativeName ;
rdf:object ?name14 .
_:695282 a rdf:Statement ;
up:attribution _:695244 ;
rdf:subject ?case15 ;
rdf:predicate up:recommendedName ;
rdf:object ?name16 .
_:695283 a rdf:Statement ;
up:source unirule:MF_01976 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:695284 a rdf:Statement ;
up:attribution _:695245 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:695285 a rdf:Statement ;
up:source unirule:MF_01976 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:695286 a rdf:Statement ;
up:attribution _:695246 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:695287 a rdf:Statement ;
up:source unirule:MF_01976 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:695288 a rdf:Statement ;
up:attribution _:695247 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:695289 a rdf:Statement ;
up:source unirule:MF_01976 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:695290 a rdf:Statement ;
up:attribution _:695248 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:695291 a rdf:Statement ;
up:source unirule:MF_01976 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:695292 a rdf:Statement ;
up:attribution _:695249 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:695293 a rdf:Statement ;
up:source unirule:MF_01976 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:695294 a rdf:Statement ;
up:attribution _:695250 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:695295 a rdf:Statement ;
up:source unirule:MF_01976 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:695296 a rdf:Statement ;
up:attribution _:695251 ;
rdf:subject ?pfs59 ;
rdf:predicate up:annotation ;
rdf:object ?annotation60 .
_:695297 a rdf:Statement ;
up:source unirule:MF_01976 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:695298 a rdf:Statement ;
up:attribution _:695252 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:695299 a rdf:Statement ;
up:source unirule:MF_01976 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:695300 a rdf:Statement ;
up:attribution _:695253 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:695301 a rdf:Statement ;
up:source unirule:MF_01976 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:695302 a rdf:Statement ;
up:attribution _:695254 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:695303 a rdf:Statement ;
up:source unirule:MF_01976 ;
rdf:subject ?pfs90 ;
rdf:predicate up:annotation ;
rdf:object ?annotation91 .
_:695304 a rdf:Statement ;
up:attribution _:695255 ;
rdf:subject ?pfs90 ;
rdf:predicate up:annotation ;
rdf:object ?annotation91 .
_:695305 a rdf:Statement ;
up:source unirule:MF_01976 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:695306 a rdf:Statement ;
up:attribution _:695256 ;
rdf:subject ?pfs97 ;
rdf:predicate up:annotation ;
rdf:object ?annotation98 .
_:695307 a rdf:Statement ;
up:source unirule:MF_01976 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:695308 a rdf:Statement ;
up:attribution _:695257 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:695309 a rdf:Statement ;
up:source unirule:MF_01976 ;
rdf:subject ?pfs111 ;
rdf:predicate up:annotation ;
rdf:object ?annotation112 .
_:695310 a rdf:Statement ;
up:attribution _:695258 ;
rdf:subject ?pfs111 ;
rdf:predicate up:annotation ;
rdf:object ?annotation112 .
_:695311 a rdf:Statement ;
up:source unirule:MF_01976 ;
rdf:subject ?pfs118 ;
rdf:predicate up:annotation ;
rdf:object ?annotation119 .
_:695312 a rdf:Statement ;
up:attribution _:695259 ;
rdf:subject ?pfs118 ;
rdf:predicate up:annotation ;
rdf:object ?annotation119 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01976
#Rule MF_01976 Created by:? on:2014-05-16 Modified by:Edouard de Castro on:2024-09-03
VALUES ?supertaxon124 {taxon:2157 taxon:2}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01976 .
?thisOrganism rdfs:subClassOf+ ?supertaxon124 .
BIND(URI(CONCAT(STR(?this), '#MF_01976a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch129 faldo:location ?templateMotifSequenceMatchRegionQ59126130 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ59126132 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ59126MF_01976125 .
?templateMotifSequenceMatchRegionQ59126130 faldo:begin ?templateMotifSequenceMatchBeginQ59126131 .
?templateMotifSequenceMatchBeginQ59126131 faldo:position ?templateMotifSequenceMatchBeginPositionQ59126126 ;
faldo:reference isoform:Q59126-1 .
?templateMotifSequenceProfileAlignmentOperationQ59126132 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
?targetMotifMatch133 faldo:location ?targetMotifMatchRegionMatch134 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01976136 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ59126MF_01976127 .
?targetMotifMatchRegionMatch134 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01976135 .
?targetMotifMatchRegionMatchBeginMF_01976135 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01976128 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01976136 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagATP) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ59126MF_01976125, 1, (STRLEN(?templateMotifCigarQ59126MF_01976125) - STRLEN(REPLACE(?templateMotifCigarQ59126MF_01976125, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionQ59126126) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ59126MF_01976127, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976127) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ59126MF_01976127, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976127) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), '')))), '[^-]', ''))) AS ?step2138) .
BIND(((?step2138 + ?targetMotifMatchRegionMatchBeginPositionMF_01976128) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t139) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch144 faldo:location ?templateMotifSequenceMatchRegionQ59126145 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ59126147 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ59126MF_01976140 .
?templateMotifSequenceMatchRegionQ59126145 faldo:begin ?templateMotifSequenceMatchBeginQ59126146 .
?templateMotifSequenceMatchBeginQ59126146 faldo:position ?templateMotifSequenceMatchBeginPositionQ59126141 ;
faldo:reference isoform:Q59126-1 .
?templateMotifSequenceProfileAlignmentOperationQ59126147 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
?targetMotifMatch148 faldo:location ?targetMotifMatchRegionMatch149 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01976151 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ59126MF_01976142 .
?targetMotifMatchRegionMatch149 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01976150 .
?targetMotifMatchRegionMatchBeginMF_01976150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01976143 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01976151 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagPPI) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ59126MF_01976140, 1, (STRLEN(?templateMotifCigarQ59126MF_01976140) - STRLEN(REPLACE(?templateMotifCigarQ59126MF_01976140, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionQ59126141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ59126MF_01976142, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976142) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ59126MF_01976142, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976142) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) .
BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_01976143) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs2t154) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch159 faldo:location ?templateMotifSequenceMatchRegionQ59126160 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ59126162 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ59126MF_01976155 .
?templateMotifSequenceMatchRegionQ59126160 faldo:begin ?templateMotifSequenceMatchBeginQ59126161 .
?templateMotifSequenceMatchBeginQ59126161 faldo:position ?templateMotifSequenceMatchBeginPositionQ59126156 ;
faldo:reference isoform:Q59126-1 .
?templateMotifSequenceProfileAlignmentOperationQ59126162 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
?targetMotifMatch163 faldo:location ?targetMotifMatchRegionMatch164 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01976166 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ59126MF_01976157 .
?targetMotifMatchRegionMatch164 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01976165 .
?targetMotifMatchRegionMatchBeginMF_01976165 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01976158 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01976166 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ59126MF_01976155, 1, (STRLEN(?templateMotifCigarQ59126MF_01976155) - STRLEN(REPLACE(?templateMotifCigarQ59126MF_01976155, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionQ59126156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ59126MF_01976157, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976157) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ59126MF_01976157, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976157) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) .
BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_01976158) - 1) AS ?thisPositionOn35) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ59126MF_01976155, 1, (STRLEN(?templateMotifCigarQ59126MF_01976155) - STRLEN(REPLACE(?templateMotifCigarQ59126MF_01976155, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionQ59126156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ59126MF_01976157, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976157) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ59126MF_01976157, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976157) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), '')))), '[^-]', ''))) AS ?step2170) .
BIND(((?step2170 + ?targetMotifMatchRegionMatchBeginPositionMF_01976158) - 1) AS ?thisPositionOn36) .
BIND(?this AS ?pfs3t171) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse32) .
FILTER (REGEX('T[ARNDCQEGHILKMFPSTWYVBZJUOX]D', SUBSTR(?thisSequenceValue, ?thisPositionOn35, (?thisPositionOn36 - ?thisPositionOn35)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch176 faldo:location ?templateMotifSequenceMatchRegionQ59126177 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ59126179 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ59126MF_01976172 .
?templateMotifSequenceMatchRegionQ59126177 faldo:begin ?templateMotifSequenceMatchBeginQ59126178 .
?templateMotifSequenceMatchBeginQ59126178 faldo:position ?templateMotifSequenceMatchBeginPositionQ59126173 ;
faldo:reference isoform:Q59126-1 .
?templateMotifSequenceProfileAlignmentOperationQ59126179 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
?targetMotifMatch180 faldo:location ?targetMotifMatchRegionMatch181 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01976183 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ59126MF_01976174 .
?targetMotifMatchRegionMatch181 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01976182 .
?targetMotifMatchRegionMatchBeginMF_01976182 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01976175 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01976183 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ59126MF_01976172, 1, (STRLEN(?templateMotifCigarQ59126MF_01976172) - STRLEN(REPLACE(?templateMotifCigarQ59126MF_01976172, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionQ59126173) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ59126MF_01976174, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976174) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ59126MF_01976174, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976174) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), '')))), '[^-]', ''))) AS ?step2185) .
BIND(((?step2185 + ?targetMotifMatchRegionMatchBeginPositionMF_01976175) - 1) AS ?thisPositionOn43) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ59126MF_01976172, 1, (STRLEN(?templateMotifCigarQ59126MF_01976172) - STRLEN(REPLACE(?templateMotifCigarQ59126MF_01976172, CONCAT('^(?:-*[^-]){', STR(((171 - ?templateMotifSequenceMatchBeginPositionQ59126173) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ59126MF_01976174, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976174) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ59126MF_01976174, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976174) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1186), '}'), '')))), '[^-]', ''))) AS ?step2187) .
BIND(((?step2187 + ?targetMotifMatchRegionMatchBeginPositionMF_01976175) - 1) AS ?thisPositionOn44) .
BIND(?this AS ?pfs3t188) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse40) .
FILTER (REGEX('MG[RH]', SUBSTR(?thisSequenceValue, ?thisPositionOn43, (?thisPositionOn44 - ?thisPositionOn43)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch193 faldo:location ?templateMotifSequenceMatchRegionQ59126194 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ59126196 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ59126MF_01976189 .
?templateMotifSequenceMatchRegionQ59126194 faldo:begin ?templateMotifSequenceMatchBeginQ59126195 .
?templateMotifSequenceMatchBeginQ59126195 faldo:position ?templateMotifSequenceMatchBeginPositionQ59126190 ;
faldo:reference isoform:Q59126-1 .
?templateMotifSequenceProfileAlignmentOperationQ59126196 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
?targetMotifMatch197 faldo:location ?targetMotifMatchRegionMatch198 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01976200 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ59126MF_01976191 .
?targetMotifMatchRegionMatch198 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01976199 .
?targetMotifMatchRegionMatchBeginMF_01976199 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01976192 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01976200 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ59126MF_01976189, 1, (STRLEN(?templateMotifCigarQ59126MF_01976189) - STRLEN(REPLACE(?templateMotifCigarQ59126MF_01976189, CONCAT('^(?:-*[^-]){', STR(((271 - ?templateMotifSequenceMatchBeginPositionQ59126190) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1201) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ59126MF_01976191, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976191) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ59126MF_01976191, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976191) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1201), '}'), '')))), '[^-]', ''))) AS ?step2202) .
BIND(((?step2202 + ?targetMotifMatchRegionMatchBeginPositionMF_01976192) - 1) AS ?thisPositionOn51) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ59126MF_01976189, 1, (STRLEN(?templateMotifCigarQ59126MF_01976189) - STRLEN(REPLACE(?templateMotifCigarQ59126MF_01976189, CONCAT('^(?:-*[^-]){', STR(((274 - ?templateMotifSequenceMatchBeginPositionQ59126190) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1203) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ59126MF_01976191, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976191) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ59126MF_01976191, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976191) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976191, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), '')))), '[^-]', ''))) AS ?step2204) .
BIND(((?step2204 + ?targetMotifMatchRegionMatchBeginPositionMF_01976192) - 1) AS ?thisPositionOn52) .
BIND(?this AS ?pfs3t205) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse48) .
FILTER (REGEX('[HY][ARNDCQEGHILKMFPSTWYVBZJUOX]{2)R', SUBSTR(?thisSequenceValue, ?thisPositionOn51, (?thisPositionOn52 - ?thisPositionOn51)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch210 faldo:location ?templateMotifSequenceMatchRegionQ59126211 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ59126213 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ59126MF_01976206 .
?templateMotifSequenceMatchRegionQ59126211 faldo:begin ?templateMotifSequenceMatchBeginQ59126212 .
?templateMotifSequenceMatchBeginQ59126212 faldo:position ?templateMotifSequenceMatchBeginPositionQ59126207 ;
faldo:reference isoform:Q59126-1 .
?templateMotifSequenceProfileAlignmentOperationQ59126213 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
?targetMotifMatch214 faldo:location ?targetMotifMatchRegionMatch215 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01976217 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ59126MF_01976208 .
?targetMotifMatchRegionMatch215 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01976216 .
?targetMotifMatchRegionMatchBeginMF_01976216 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01976209 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01976217 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ59126MF_01976206, 1, (STRLEN(?templateMotifCigarQ59126MF_01976206) - STRLEN(REPLACE(?templateMotifCigarQ59126MF_01976206, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionQ59126207) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1218) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ59126MF_01976208, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976208) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ59126MF_01976208, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976208) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), '')))), '[^-]', ''))) AS ?step2219) .
BIND(((?step2219 + ?targetMotifMatchRegionMatchBeginPositionMF_01976209) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs3t220) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch225 faldo:location ?templateMotifSequenceMatchRegionQ59126226 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ59126228 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ59126MF_01976221 .
?templateMotifSequenceMatchRegionQ59126226 faldo:begin ?templateMotifSequenceMatchBeginQ59126227 .
?templateMotifSequenceMatchBeginQ59126227 faldo:position ?templateMotifSequenceMatchBeginPositionQ59126222 ;
faldo:reference isoform:Q59126-1 .
?templateMotifSequenceProfileAlignmentOperationQ59126228 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
?targetMotifMatch229 faldo:location ?targetMotifMatchRegionMatch230 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01976232 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ59126MF_01976223 .
?targetMotifMatchRegionMatch230 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01976231 .
?targetMotifMatchRegionMatchBeginMF_01976231 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01976224 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01976232 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ59126MF_01976221, 1, (STRLEN(?templateMotifCigarQ59126MF_01976221) - STRLEN(REPLACE(?templateMotifCigarQ59126MF_01976221, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionQ59126222) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1233) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ59126MF_01976223, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976223) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ59126MF_01976223, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976223) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), '')))), '[^-]', ''))) AS ?step2234) .
BIND(((?step2234 + ?targetMotifMatchRegionMatchBeginPositionMF_01976224) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs3t235) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse62) .
FILTER (REGEX('[DEN]', SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a60')) AS ?annotation60) .
BIND(?this AS ?pfs59) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch240 faldo:location ?templateMotifSequenceMatchRegionQ59126241 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ59126243 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ59126MF_01976236 .
?templateMotifSequenceMatchRegionQ59126241 faldo:begin ?templateMotifSequenceMatchBeginQ59126242 .
?templateMotifSequenceMatchBeginQ59126242 faldo:position ?templateMotifSequenceMatchBeginPositionQ59126237 ;
faldo:reference isoform:Q59126-1 .
?templateMotifSequenceProfileAlignmentOperationQ59126243 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
?targetMotifMatch244 faldo:location ?targetMotifMatchRegionMatch245 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01976247 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ59126MF_01976238 .
?targetMotifMatchRegionMatch245 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01976246 .
?targetMotifMatchRegionMatchBeginMF_01976246 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01976239 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01976247 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ59126MF_01976236, 1, (STRLEN(?templateMotifCigarQ59126MF_01976236) - STRLEN(REPLACE(?templateMotifCigarQ59126MF_01976236, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionQ59126237) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1248) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ59126MF_01976238, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976238) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ59126MF_01976238, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976238) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), '')))), '[^-]', ''))) AS ?step2249) .
BIND(((?step2249 + ?targetMotifMatchRegionMatchBeginPositionMF_01976239) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs3t250) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse69) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch255 faldo:location ?templateMotifSequenceMatchRegionQ59126256 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ59126258 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ59126MF_01976251 .
?templateMotifSequenceMatchRegionQ59126256 faldo:begin ?templateMotifSequenceMatchBeginQ59126257 .
?templateMotifSequenceMatchBeginQ59126257 faldo:position ?templateMotifSequenceMatchBeginPositionQ59126252 ;
faldo:reference isoform:Q59126-1 .
?templateMotifSequenceProfileAlignmentOperationQ59126258 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
?targetMotifMatch259 faldo:location ?targetMotifMatchRegionMatch260 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01976262 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ59126MF_01976253 .
?targetMotifMatchRegionMatch260 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01976261 .
?targetMotifMatchRegionMatchBeginMF_01976261 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01976254 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01976262 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ59126MF_01976251, 1, (STRLEN(?templateMotifCigarQ59126MF_01976251) - STRLEN(REPLACE(?templateMotifCigarQ59126MF_01976251, CONCAT('^(?:-*[^-]){', STR(((221 - ?templateMotifSequenceMatchBeginPositionQ59126252) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1263) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ59126MF_01976253, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976253) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ59126MF_01976253, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976253) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), '')))), '[^-]', ''))) AS ?step2264) .
BIND(((?step2264 + ?targetMotifMatchRegionMatchBeginPositionMF_01976254) - 1) AS ?thisPositionOn80) .
BIND(?thisPositionOn80 AS ?thisPositionOn81) .
BIND(?this AS ?pfs3t265) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse77) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch270 faldo:location ?templateMotifSequenceMatchRegionQ59126271 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ59126273 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ59126MF_01976266 .
?templateMotifSequenceMatchRegionQ59126271 faldo:begin ?templateMotifSequenceMatchBeginQ59126272 .
?templateMotifSequenceMatchBeginQ59126272 faldo:position ?templateMotifSequenceMatchBeginPositionQ59126267 ;
faldo:reference isoform:Q59126-1 .
?templateMotifSequenceProfileAlignmentOperationQ59126273 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
?targetMotifMatch274 faldo:location ?targetMotifMatchRegionMatch275 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01976277 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ59126MF_01976268 .
?targetMotifMatchRegionMatch275 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01976276 .
?targetMotifMatchRegionMatchBeginMF_01976276 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01976269 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01976277 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ59126MF_01976266, 1, (STRLEN(?templateMotifCigarQ59126MF_01976266) - STRLEN(REPLACE(?templateMotifCigarQ59126MF_01976266, CONCAT('^(?:-*[^-]){', STR(((265 - ?templateMotifSequenceMatchBeginPositionQ59126267) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1278) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ59126MF_01976268, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976268) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ59126MF_01976268, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976268) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), '')))), '[^-]', ''))) AS ?step2279) .
BIND(((?step2279 + ?targetMotifMatchRegionMatchBeginPositionMF_01976269) - 1) AS ?thisPositionOn88) .
BIND(?thisPositionOn88 AS ?thisPositionOn89) .
BIND(?this AS ?pfs3t280) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfse85) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn88, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch285 faldo:location ?templateMotifSequenceMatchRegionQ9L1L8286 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9L1L8288 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9L1L8MF_01976281 .
?templateMotifSequenceMatchRegionQ9L1L8286 faldo:begin ?templateMotifSequenceMatchBeginQ9L1L8287 .
?templateMotifSequenceMatchBeginQ9L1L8287 faldo:position ?templateMotifSequenceMatchBeginPositionQ9L1L8282 ;
faldo:reference isoform:Q9L1L8-1 .
?templateMotifSequenceProfileAlignmentOperationQ9L1L8288 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
?targetMotifMatch289 faldo:location ?targetMotifMatchRegionMatch290 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01976292 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9L1L8MF_01976283 .
?targetMotifMatchRegionMatch290 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01976291 .
?targetMotifMatchRegionMatchBeginMF_01976291 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01976284 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01976292 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9L1L8MF_01976281, 1, (STRLEN(?templateMotifCigarQ9L1L8MF_01976281) - STRLEN(REPLACE(?templateMotifCigarQ9L1L8MF_01976281, CONCAT('^(?:-*[^-]){', STR(((72 - ?templateMotifSequenceMatchBeginPositionQ9L1L8282) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1293) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9L1L8MF_01976283, 1, (STRLEN(?targetMotifMatchCigarQ9L1L8MF_01976283) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1L8MF_01976283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1293), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9L1L8MF_01976283, 1, (STRLEN(?targetMotifMatchCigarQ9L1L8MF_01976283) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1L8MF_01976283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1293), '}'), '')))), '[^-]', ''))) AS ?step2294) .
BIND(((?step2294 + ?targetMotifMatchRegionMatchBeginPositionMF_01976284) - 1) AS ?thisPositionOn95) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9L1L8MF_01976281, 1, (STRLEN(?templateMotifCigarQ9L1L8MF_01976281) - STRLEN(REPLACE(?templateMotifCigarQ9L1L8MF_01976281, CONCAT('^(?:-*[^-]){', STR(((73 - ?templateMotifSequenceMatchBeginPositionQ9L1L8282) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1295) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9L1L8MF_01976283, 1, (STRLEN(?targetMotifMatchCigarQ9L1L8MF_01976283) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1L8MF_01976283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1295), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9L1L8MF_01976283, 1, (STRLEN(?targetMotifMatchCigarQ9L1L8MF_01976283) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1L8MF_01976283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1295), '}'), '')))), '[^-]', ''))) AS ?step2296) .
BIND(((?step2296 + ?targetMotifMatchRegionMatchBeginPositionMF_01976284) - 1) AS ?thisPositionOn96) .
BIND(?this AS ?pfs4t297) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfsb92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfse93) .
FILTER (REGEX('[RK][ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn95, (?thisPositionOn96 - ?thisPositionOn95)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a91')) AS ?annotation91) .
BIND(?this AS ?pfs90) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch302 faldo:location ?templateMotifSequenceMatchRegionQ9L1L8303 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9L1L8305 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9L1L8MF_01976298 .
?templateMotifSequenceMatchRegionQ9L1L8303 faldo:begin ?templateMotifSequenceMatchBeginQ9L1L8304 .
?templateMotifSequenceMatchBeginQ9L1L8304 faldo:position ?templateMotifSequenceMatchBeginPositionQ9L1L8299 ;
faldo:reference isoform:Q9L1L8-1 .
?templateMotifSequenceProfileAlignmentOperationQ9L1L8305 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
?targetMotifMatch306 faldo:location ?targetMotifMatchRegionMatch307 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01976309 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9L1L8MF_01976300 .
?targetMotifMatchRegionMatch307 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01976308 .
?targetMotifMatchRegionMatchBeginMF_01976308 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01976301 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01976309 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9L1L8MF_01976298, 1, (STRLEN(?templateMotifCigarQ9L1L8MF_01976298) - STRLEN(REPLACE(?templateMotifCigarQ9L1L8MF_01976298, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionQ9L1L8299) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1310) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9L1L8MF_01976300, 1, (STRLEN(?targetMotifMatchCigarQ9L1L8MF_01976300) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1L8MF_01976300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9L1L8MF_01976300, 1, (STRLEN(?targetMotifMatchCigarQ9L1L8MF_01976300) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1L8MF_01976300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1310), '}'), '')))), '[^-]', ''))) AS ?step2311) .
BIND(((?step2311 + ?targetMotifMatchRegionMatchBeginPositionMF_01976301) - 1) AS ?thisPositionOn102) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9L1L8MF_01976298, 1, (STRLEN(?templateMotifCigarQ9L1L8MF_01976298) - STRLEN(REPLACE(?templateMotifCigarQ9L1L8MF_01976298, CONCAT('^(?:-*[^-]){', STR(((105 - ?templateMotifSequenceMatchBeginPositionQ9L1L8299) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1312) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9L1L8MF_01976300, 1, (STRLEN(?targetMotifMatchCigarQ9L1L8MF_01976300) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1L8MF_01976300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9L1L8MF_01976300, 1, (STRLEN(?targetMotifMatchCigarQ9L1L8MF_01976300) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1L8MF_01976300, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1312), '}'), '')))), '[^-]', ''))) AS ?step2313) .
BIND(((?step2313 + ?targetMotifMatchRegionMatchBeginPositionMF_01976301) - 1) AS ?thisPositionOn103) .
BIND(?this AS ?pfs4t314) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse100) .
FILTER (REGEX('G[DEN]G[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn102, (?thisPositionOn103 - ?thisPositionOn102)))) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a98')) AS ?annotation98) .
BIND(?this AS ?pfs97) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch319 faldo:location ?templateMotifSequenceMatchRegionQ9L1L8320 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9L1L8322 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9L1L8MF_01976315 .
?templateMotifSequenceMatchRegionQ9L1L8320 faldo:begin ?templateMotifSequenceMatchBeginQ9L1L8321 .
?templateMotifSequenceMatchBeginQ9L1L8321 faldo:position ?templateMotifSequenceMatchBeginPositionQ9L1L8316 ;
faldo:reference isoform:Q9L1L8-1 .
?templateMotifSequenceProfileAlignmentOperationQ9L1L8322 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
?targetMotifMatch323 faldo:location ?targetMotifMatchRegionMatch324 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01976326 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9L1L8MF_01976317 .
?targetMotifMatchRegionMatch324 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01976325 .
?targetMotifMatchRegionMatchBeginMF_01976325 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01976318 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01976326 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9L1L8MF_01976315, 1, (STRLEN(?templateMotifCigarQ9L1L8MF_01976315) - STRLEN(REPLACE(?templateMotifCigarQ9L1L8MF_01976315, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionQ9L1L8316) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1327) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9L1L8MF_01976317, 1, (STRLEN(?targetMotifMatchCigarQ9L1L8MF_01976317) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1L8MF_01976317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9L1L8MF_01976317, 1, (STRLEN(?targetMotifMatchCigarQ9L1L8MF_01976317) - STRLEN(REPLACE(?targetMotifMatchCigarQ9L1L8MF_01976317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), '')))), '[^-]', ''))) AS ?step2328) .
BIND(((?step2328 + ?targetMotifMatchRegionMatchBeginPositionMF_01976318) - 1) AS ?thisPositionOn109) .
BIND(?thisPositionOn109 AS ?thisPositionOn110) .
BIND(?this AS ?pfs4t329) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfsb106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfse107) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn109, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a105')) AS ?annotation105) .
BIND(?this AS ?pfs104) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch334 faldo:location ?templateMotifSequenceMatchRegionQ59126335 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ59126337 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ59126MF_01976330 .
?templateMotifSequenceMatchRegionQ59126335 faldo:begin ?templateMotifSequenceMatchBeginQ59126336 .
?templateMotifSequenceMatchBeginQ59126336 faldo:position ?templateMotifSequenceMatchBeginPositionQ59126331 ;
faldo:reference isoform:Q59126-1 .
?templateMotifSequenceProfileAlignmentOperationQ59126337 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
?targetMotifMatch338 faldo:location ?targetMotifMatchRegionMatch339 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01976341 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ59126MF_01976332 .
?targetMotifMatchRegionMatch339 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01976340 .
?targetMotifMatchRegionMatchBeginMF_01976340 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01976333 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01976341 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ59126MF_01976330, 1, (STRLEN(?templateMotifCigarQ59126MF_01976330) - STRLEN(REPLACE(?templateMotifCigarQ59126MF_01976330, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionQ59126331) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1342) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ59126MF_01976332, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976332) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ59126MF_01976332, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976332) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976332, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1342), '}'), '')))), '[^-]', ''))) AS ?step2343) .
BIND(((?step2343 + ?targetMotifMatchRegionMatchBeginPositionMF_01976333) - 1) AS ?thisPositionOn116) .
BIND(?thisPositionOn116 AS ?thisPositionOn117) .
BIND(?this AS ?pfs5t344) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfsb113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfse114) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn116, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a112')) AS ?annotation112) .
BIND(?this AS ?pfs111) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch349 faldo:location ?templateMotifSequenceMatchRegionQ59126350 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ59126352 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ59126MF_01976345 .
?templateMotifSequenceMatchRegionQ59126350 faldo:begin ?templateMotifSequenceMatchBeginQ59126351 .
?templateMotifSequenceMatchBeginQ59126351 faldo:position ?templateMotifSequenceMatchBeginPositionQ59126346 ;
faldo:reference isoform:Q59126-1 .
?templateMotifSequenceProfileAlignmentOperationQ59126352 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
?targetMotifMatch353 faldo:location ?targetMotifMatchRegionMatch354 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01976356 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ59126MF_01976347 .
?targetMotifMatchRegionMatch354 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01976355 .
?targetMotifMatchRegionMatchBeginMF_01976355 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01976348 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01976356 edam:has_input signature:MF_01976 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ59126MF_01976345, 1, (STRLEN(?templateMotifCigarQ59126MF_01976345) - STRLEN(REPLACE(?templateMotifCigarQ59126MF_01976345, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionQ59126346) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1357) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ59126MF_01976347, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976347) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976347, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1357), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ59126MF_01976347, 1, (STRLEN(?targetMotifMatchCigarQ59126MF_01976347) - STRLEN(REPLACE(?targetMotifMatchCigarQ59126MF_01976347, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1357), '}'), '')))), '[^-]', ''))) AS ?step2358) .
BIND(((?step2358 + ?targetMotifMatchRegionMatchBeginPositionMF_01976348) - 1) AS ?thisPositionOn122) .
BIND(?thisPositionOn122 AS ?thisPositionOn123) .
BIND(?this AS ?pfs5t359) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn122))) AS ?pfsb120) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn123))) AS ?pfse121) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn122, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a119')) AS ?annotation119) .
BIND(?this AS ?pfs118) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag360) .
}
BIND(IF(BOUND(?tagATP), ?caseWithTag360, ?UNBOUND_VARIABLE) AS ?case6) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag361) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a8')) AS ?name8) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a9')) AS ?name9) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a10')) AS ?name10) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a11')) AS ?name11) .
}
BIND(IF(BOUND(?tagPPI), ?caseWithTag361, ?UNBOUND_VARIABLE) AS ?case7) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag362) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a13')) AS ?name13) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a14')) AS ?name14) .
}
BIND(IF((BOUND(?tagATP) || BOUND(?tagPPI)), ?caseWithTag362, ?UNBOUND_VARIABLE) AS ?case12) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag363) .
BIND(URI(CONCAT(STR(?this), '#MF_01976a16')) AS ?name16) .
}
BIND(IF((BOUND(?tagATP) || BOUND(?tagPPI)), ?caseWithTag363, ?UNBOUND_VARIABLE) AS ?case15) .
}
"xsd:string |
