| http://purl.uniprot.org/unirules/MF_02029#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:715419 up:source unirule:MF_02029 .
_:715420 up:source unirule:MF_02029 .
_:715421 up:source unirule:MF_02029 .
_:715422 up:source unirule:MF_02029 .
_:715423 up:source unirule:MF_02029 .
_:715424 up:source unirule:MF_02029 .
_:715425 up:source unirule:MF_02029 .
_:715426 up:source unirule:MF_02029 .
_:715427 up:source unirule:MF_02029 .
_:715428 up:source unirule:MF_02029 .
_:715429 up:source unirule:MF_02029 .
_:715430 up:source unirule:MF_02029 .
_:715431 up:source unirule:MF_02029 .
_:715432 up:source unirule:MF_02029 .
_:715433 up:source unirule:MF_02029 .
_:715434 up:source unirule:MF_02029 .
_:715435 up:source unirule:MF_02029 .
_:715436 up:source unirule:MF_02029 .
_:715437 up:source unirule:MF_02029 .
_:715438 up:source unirule:MF_02029 .
_:715439 up:source unirule:MF_02029 .
_:715440 up:source unirule:MF_02029 .
_:715441 up:source unirule:MF_02029 .
_:715442 up:source unirule:MF_02029 .
_:715443 up:source unirule:MF_02029 .
_:715444 up:source unirule:MF_02029 .
_:715445 up:source unirule:MF_02029 .
_:715446 up:source unirule:MF_02029 .
_:715447 up:source unirule:MF_02029 .
_:715448 up:source unirule:MF_02029 .
_:715449 up:source unirule:MF_02029 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0009246 ,
GO:0089714 ,
keyword:520 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.1.1.336' ;
up:fullName 'UDP-N-acetyl-D-mannosamine dehydrogenase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'UDP-ManNAc 6-dehydrogenase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'wecC' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the four-electron oxidation of UDP-N-acetyl-D-mannosamine (UDP-ManNAc), reducing NAD(+) and releasing UDP-N-acetylmannosaminuronic acid (UDP-ManNAcA).' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Bacterial outer membrane biogenesis; enterobacterial common antigen biosynthesis.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. WecC subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor/acceptor' .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in chain A' .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:57540 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in chain A' .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:57540 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in chain A' .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:57540 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in chain A' .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:57540 .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in chain A' .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:57540 .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
up:ligand ?ligand60 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in chain A' .
?pfsb58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand60 rdfs:subClassOf chebi:70731 .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
up:ligand ?ligand67 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in chain A' .
?pfsb65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?ligand67 rdfs:subClassOf chebi:70731 .
?pfs70 up:annotation ?annotation71 .
?annotation71 faldo:begin ?pfsb72 ;
faldo:end ?pfse73 ;
up:ligand ?ligand74 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in chain A' .
?pfsb72 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?ligand74 rdfs:subClassOf chebi:70731 .
?pfs77 up:annotation ?annotation78 .
?annotation78 faldo:begin ?pfsb79 ;
faldo:end ?pfse80 ;
up:ligand ?ligand81 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in chain A' .
?pfsb79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfse80 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?ligand81 rdfs:subClassOf chebi:70731 .
?pfs84 up:annotation ?annotation85 .
?annotation85 faldo:begin ?pfsb86 ;
faldo:end ?pfse87 ;
up:ligand ?ligand88 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in chain A' .
?pfsb86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?pfse87 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?ligand88 rdfs:subClassOf chebi:70731 .
?pfs91 up:annotation ?annotation92 .
?annotation92 faldo:begin ?pfsb93 ;
faldo:end ?pfse94 ;
up:ligand ?ligand95 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in chain B' .
?pfsb93 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?pfse94 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?ligand95 rdfs:subClassOf chebi:70731 .
?pfs98 up:annotation ?annotation99 .
?annotation99 faldo:begin ?pfsb100 ;
faldo:end ?pfse101 ;
up:ligand ?ligand102 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in chain B' .
?pfsb100 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfse101 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
?ligand102 rdfs:subClassOf chebi:70731 .
?pfs105 up:annotation ?annotation106 .
?annotation106 faldo:begin ?pfsb107 ;
faldo:end ?pfse108 ;
up:ligand ?ligand109 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in chain A' .
?pfsb107 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?pfse108 faldo:position ?thisPositionOn111 ;
rdf:type faldo:ExactPosition .
?ligand109 rdfs:subClassOf chebi:70731 .
?pfs112 up:annotation ?annotation113 .
?annotation113 faldo:begin ?pfsb114 ;
faldo:end ?pfse115 ;
up:ligand ?ligand116 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in chain A' .
?pfsb114 faldo:position ?thisPositionOn117 ;
rdf:type faldo:ExactPosition .
?pfse115 faldo:position ?thisPositionOn118 ;
rdf:type faldo:ExactPosition .
?ligand116 rdfs:subClassOf chebi:70731 .
?pfs119 up:annotation ?annotation120 .
?annotation120 faldo:begin ?pfsb121 ;
faldo:end ?pfse122 ;
up:ligand ?ligand123 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in chain A' .
?pfsb121 faldo:position ?thisPositionOn124 ;
rdf:type faldo:ExactPosition .
?pfse122 faldo:position ?thisPositionOn125 ;
rdf:type faldo:ExactPosition .
?ligand123 rdfs:subClassOf chebi:70731 .
?pfs126 up:annotation ?annotation127 .
?annotation127 faldo:begin ?pfsb128 ;
faldo:end ?pfse129 ;
up:ligand ?ligand130 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in chain B' .
?pfsb128 faldo:position ?thisPositionOn131 ;
rdf:type faldo:ExactPosition .
?pfse129 faldo:position ?thisPositionOn132 ;
rdf:type faldo:ExactPosition .
?ligand130 rdfs:subClassOf chebi:57540 .
?pfs133 up:annotation ?annotation134 .
?annotation134 faldo:begin ?pfsb135 ;
faldo:end ?pfse136 ;
up:ligand ?ligand137 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in chain A' .
?pfsb135 faldo:position ?thisPositionOn138 ;
rdf:type faldo:ExactPosition .
?pfse136 faldo:position ?thisPositionOn139 ;
rdf:type faldo:ExactPosition .
?ligand137 rdfs:subClassOf chebi:70731 .
_:715450 a rdf:Statement ;
up:attribution _:715419 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:715451 a rdf:Statement ;
up:attribution _:715420 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:715452 a rdf:Statement ;
up:attribution _:715421 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:715453 a rdf:Statement ;
up:attribution _:715422 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:715454 a rdf:Statement ;
up:attribution _:715423 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:715455 a rdf:Statement ;
up:attribution _:715424 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:715456 a rdf:Statement ;
up:attribution _:715425 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:715457 a rdf:Statement ;
up:attribution _:715426 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:715458 a rdf:Statement ;
up:attribution _:715427 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:715459 a rdf:Statement ;
up:attribution _:715428 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:715460 a rdf:Statement ;
up:attribution _:715429 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0089714 .
_:715461 a rdf:Statement ;
up:attribution _:715430 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009246 .
_:715462 a rdf:Statement ;
up:source unirule:MF_02029 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:715463 a rdf:Statement ;
up:attribution _:715431 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:715464 a rdf:Statement ;
up:source unirule:MF_02029 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:715465 a rdf:Statement ;
up:attribution _:715432 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:715466 a rdf:Statement ;
up:source unirule:MF_02029 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:715467 a rdf:Statement ;
up:attribution _:715433 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:715468 a rdf:Statement ;
up:source unirule:MF_02029 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:715469 a rdf:Statement ;
up:attribution _:715434 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:715470 a rdf:Statement ;
up:source unirule:MF_02029 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:715471 a rdf:Statement ;
up:attribution _:715435 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:715472 a rdf:Statement ;
up:source unirule:MF_02029 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:715473 a rdf:Statement ;
up:attribution _:715436 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:715474 a rdf:Statement ;
up:source unirule:MF_02029 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:715475 a rdf:Statement ;
up:attribution _:715437 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:715476 a rdf:Statement ;
up:source unirule:MF_02029 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:715477 a rdf:Statement ;
up:attribution _:715438 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:715478 a rdf:Statement ;
up:source unirule:MF_02029 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:715479 a rdf:Statement ;
up:attribution _:715439 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:715480 a rdf:Statement ;
up:source unirule:MF_02029 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:715481 a rdf:Statement ;
up:attribution _:715440 ;
rdf:subject ?pfs70 ;
rdf:predicate up:annotation ;
rdf:object ?annotation71 .
_:715482 a rdf:Statement ;
up:source unirule:MF_02029 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:715483 a rdf:Statement ;
up:attribution _:715441 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:715484 a rdf:Statement ;
up:source unirule:MF_02029 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:715485 a rdf:Statement ;
up:attribution _:715442 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:715486 a rdf:Statement ;
up:source unirule:MF_02029 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:715487 a rdf:Statement ;
up:attribution _:715443 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:715488 a rdf:Statement ;
up:source unirule:MF_02029 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:715489 a rdf:Statement ;
up:attribution _:715444 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:715490 a rdf:Statement ;
up:source unirule:MF_02029 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:715491 a rdf:Statement ;
up:attribution _:715445 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:715492 a rdf:Statement ;
up:source unirule:MF_02029 ;
rdf:subject ?pfs112 ;
rdf:predicate up:annotation ;
rdf:object ?annotation113 .
_:715493 a rdf:Statement ;
up:attribution _:715446 ;
rdf:subject ?pfs112 ;
rdf:predicate up:annotation ;
rdf:object ?annotation113 .
_:715494 a rdf:Statement ;
up:source unirule:MF_02029 ;
rdf:subject ?pfs119 ;
rdf:predicate up:annotation ;
rdf:object ?annotation120 .
_:715495 a rdf:Statement ;
up:attribution _:715447 ;
rdf:subject ?pfs119 ;
rdf:predicate up:annotation ;
rdf:object ?annotation120 .
_:715496 a rdf:Statement ;
up:source unirule:MF_02029 ;
rdf:subject ?pfs126 ;
rdf:predicate up:annotation ;
rdf:object ?annotation127 .
_:715497 a rdf:Statement ;
up:attribution _:715448 ;
rdf:subject ?pfs126 ;
rdf:predicate up:annotation ;
rdf:object ?annotation127 .
_:715498 a rdf:Statement ;
up:source unirule:MF_02029 ;
rdf:subject ?pfs133 ;
rdf:predicate up:annotation ;
rdf:object ?annotation134 .
_:715499 a rdf:Statement ;
up:attribution _:715449 ;
rdf:subject ?pfs133 ;
rdf:predicate up:annotation ;
rdf:object ?annotation134 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02029
#Rule MF_02029 Created by:? on:2015-05-11 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02029 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_02029a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch144 faldo:location ?templateMotifSequenceMatchRegionP27829145 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829147 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27829MF_02029140 .
?templateMotifSequenceMatchRegionP27829145 faldo:begin ?templateMotifSequenceMatchBeginP27829146 .
?templateMotifSequenceMatchBeginP27829146 faldo:position ?templateMotifSequenceMatchBeginPositionP27829141 ;
faldo:reference isoform:P27829-1 .
?templateMotifSequenceProfileAlignmentOperationP27829147 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
?targetMotifMatch148 faldo:location ?targetMotifMatchRegionMatch149 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029151 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27829MF_02029142 .
?targetMotifMatchRegionMatch149 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029150 .
?targetMotifMatchRegionMatchBeginMF_02029150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029143 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02029151 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029140, 1, (STRLEN(?templateMotifCigarP27829MF_02029140) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029140, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP27829141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029142, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029142) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029142, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029142) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) .
BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_02029143) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t154) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch159 faldo:location ?templateMotifSequenceMatchRegionP27829160 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829162 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27829MF_02029155 .
?templateMotifSequenceMatchRegionP27829160 faldo:begin ?templateMotifSequenceMatchBeginP27829161 .
?templateMotifSequenceMatchBeginP27829161 faldo:position ?templateMotifSequenceMatchBeginPositionP27829156 ;
faldo:reference isoform:P27829-1 .
?templateMotifSequenceProfileAlignmentOperationP27829162 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
?targetMotifMatch163 faldo:location ?targetMotifMatchRegionMatch164 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029166 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27829MF_02029157 .
?targetMotifMatchRegionMatch164 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029165 .
?targetMotifMatchRegionMatchBeginMF_02029165 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029158 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02029166 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029155, 1, (STRLEN(?templateMotifCigarP27829MF_02029155) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029155, CONCAT('^(?:-*[^-]){', STR(((266 - ?templateMotifSequenceMatchBeginPositionP27829156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029157, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029157) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029157, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029157) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) .
BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_02029158) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t169) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch174 faldo:location ?templateMotifSequenceMatchRegionP27829175 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829177 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27829MF_02029170 .
?templateMotifSequenceMatchRegionP27829175 faldo:begin ?templateMotifSequenceMatchBeginP27829176 .
?templateMotifSequenceMatchBeginP27829176 faldo:position ?templateMotifSequenceMatchBeginPositionP27829171 ;
faldo:reference isoform:P27829-1 .
?templateMotifSequenceProfileAlignmentOperationP27829177 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
?targetMotifMatch178 faldo:location ?targetMotifMatchRegionMatch179 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029181 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27829MF_02029172 .
?targetMotifMatchRegionMatch179 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029180 .
?targetMotifMatchRegionMatchBeginMF_02029180 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029173 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02029181 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029170, 1, (STRLEN(?templateMotifCigarP27829MF_02029170) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029170, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionP27829171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029172, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029172) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029172, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029172) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) .
BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_02029173) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t184) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch189 faldo:location ?templateMotifSequenceMatchRegionP27829190 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829192 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27829MF_02029185 .
?templateMotifSequenceMatchRegionP27829190 faldo:begin ?templateMotifSequenceMatchBeginP27829191 .
?templateMotifSequenceMatchBeginP27829191 faldo:position ?templateMotifSequenceMatchBeginPositionP27829186 ;
faldo:reference isoform:P27829-1 .
?templateMotifSequenceProfileAlignmentOperationP27829192 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
?targetMotifMatch193 faldo:location ?targetMotifMatchRegionMatch194 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029196 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27829MF_02029187 .
?targetMotifMatchRegionMatch194 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029195 .
?targetMotifMatchRegionMatchBeginMF_02029195 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029188 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02029196 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029185, 1, (STRLEN(?templateMotifCigarP27829MF_02029185) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029185, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionP27829186) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029187, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029187) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029187, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029187) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), '')))), '[^-]', ''))) AS ?step2198) .
BIND(((?step2198 + ?targetMotifMatchRegionMatchBeginPositionMF_02029188) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t199) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'I')) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch204 faldo:location ?templateMotifSequenceMatchRegionP27829205 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829207 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27829MF_02029200 .
?templateMotifSequenceMatchRegionP27829205 faldo:begin ?templateMotifSequenceMatchBeginP27829206 .
?templateMotifSequenceMatchBeginP27829206 faldo:position ?templateMotifSequenceMatchBeginPositionP27829201 ;
faldo:reference isoform:P27829-1 .
?templateMotifSequenceProfileAlignmentOperationP27829207 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
?targetMotifMatch208 faldo:location ?targetMotifMatchRegionMatch209 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029211 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27829MF_02029202 .
?targetMotifMatchRegionMatch209 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029210 .
?targetMotifMatchRegionMatchBeginMF_02029210 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029203 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02029211 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029200, 1, (STRLEN(?templateMotifCigarP27829MF_02029200) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029200, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionP27829201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1212) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029202, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029202) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029202, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029202) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), '')))), '[^-]', ''))) AS ?step2213) .
BIND(((?step2213 + ?targetMotifMatchRegionMatchBeginPositionMF_02029203) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t214) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch219 faldo:location ?templateMotifSequenceMatchRegionP27829220 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829222 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27829MF_02029215 .
?templateMotifSequenceMatchRegionP27829220 faldo:begin ?templateMotifSequenceMatchBeginP27829221 .
?templateMotifSequenceMatchBeginP27829221 faldo:position ?templateMotifSequenceMatchBeginPositionP27829216 ;
faldo:reference isoform:P27829-1 .
?templateMotifSequenceProfileAlignmentOperationP27829222 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
?targetMotifMatch223 faldo:location ?targetMotifMatchRegionMatch224 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029226 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27829MF_02029217 .
?targetMotifMatchRegionMatch224 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029225 .
?targetMotifMatchRegionMatchBeginMF_02029225 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029218 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02029226 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029215, 1, (STRLEN(?templateMotifCigarP27829MF_02029215) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029215, CONCAT('^(?:-*[^-]){', STR(((85 - ?templateMotifSequenceMatchBeginPositionP27829216) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1227) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029217, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029217) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029217, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029217) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), '')))), '[^-]', ''))) AS ?step2228) .
BIND(((?step2228 + ?targetMotifMatchRegionMatchBeginPositionMF_02029218) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t229) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch234 faldo:location ?templateMotifSequenceMatchRegionP27829235 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829237 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27829MF_02029230 .
?templateMotifSequenceMatchRegionP27829235 faldo:begin ?templateMotifSequenceMatchBeginP27829236 .
?templateMotifSequenceMatchBeginP27829236 faldo:position ?templateMotifSequenceMatchBeginPositionP27829231 ;
faldo:reference isoform:P27829-1 .
?templateMotifSequenceProfileAlignmentOperationP27829237 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
?targetMotifMatch238 faldo:location ?targetMotifMatchRegionMatch239 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029241 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27829MF_02029232 .
?targetMotifMatchRegionMatch239 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029240 .
?targetMotifMatchRegionMatchBeginMF_02029240 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029233 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02029241 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029230, 1, (STRLEN(?templateMotifCigarP27829MF_02029230) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029230, CONCAT('^(?:-*[^-]){', STR(((126 - ?templateMotifSequenceMatchBeginPositionP27829231) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1242) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029232, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029232) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1242), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029232, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029232) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1242), '}'), '')))), '[^-]', ''))) AS ?step2243) .
BIND(((?step2243 + ?targetMotifMatchRegionMatchBeginPositionMF_02029233) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs1t244) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch249 faldo:location ?templateMotifSequenceMatchRegionP27829250 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829252 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27829MF_02029245 .
?templateMotifSequenceMatchRegionP27829250 faldo:begin ?templateMotifSequenceMatchBeginP27829251 .
?templateMotifSequenceMatchBeginP27829251 faldo:position ?templateMotifSequenceMatchBeginPositionP27829246 ;
faldo:reference isoform:P27829-1 .
?templateMotifSequenceProfileAlignmentOperationP27829252 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
?targetMotifMatch253 faldo:location ?targetMotifMatchRegionMatch254 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029256 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27829MF_02029247 .
?targetMotifMatchRegionMatch254 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029255 .
?targetMotifMatchRegionMatchBeginMF_02029255 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029248 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02029256 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029245, 1, (STRLEN(?templateMotifCigarP27829MF_02029245) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029245, CONCAT('^(?:-*[^-]){', STR(((160 - ?templateMotifSequenceMatchBeginPositionP27829246) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1257) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029247, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029247) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1257), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029247, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029247) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1257), '}'), '')))), '[^-]', ''))) AS ?step2258) .
BIND(((?step2258 + ?targetMotifMatchRegionMatchBeginPositionMF_02029248) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs1t259) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse59) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch264 faldo:location ?templateMotifSequenceMatchRegionP27829265 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829267 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27829MF_02029260 .
?templateMotifSequenceMatchRegionP27829265 faldo:begin ?templateMotifSequenceMatchBeginP27829266 .
?templateMotifSequenceMatchBeginP27829266 faldo:position ?templateMotifSequenceMatchBeginPositionP27829261 ;
faldo:reference isoform:P27829-1 .
?templateMotifSequenceProfileAlignmentOperationP27829267 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
?targetMotifMatch268 faldo:location ?targetMotifMatchRegionMatch269 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029271 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27829MF_02029262 .
?targetMotifMatchRegionMatch269 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029270 .
?targetMotifMatchRegionMatchBeginMF_02029270 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029263 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02029271 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029260, 1, (STRLEN(?templateMotifCigarP27829MF_02029260) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029260, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionP27829261) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1272) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029262, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029262) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029262, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1272), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029262, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029262) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029262, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1272), '}'), '')))), '[^-]', ''))) AS ?step2273) .
BIND(((?step2273 + ?targetMotifMatchRegionMatchBeginPositionMF_02029263) - 1) AS ?thisPositionOn68) .
BIND(?thisPositionOn68 AS ?thisPositionOn69) .
BIND(?this AS ?pfs1t274) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfse66) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn68, 1) = 'V')) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch279 faldo:location ?templateMotifSequenceMatchRegionP27829280 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829282 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27829MF_02029275 .
?templateMotifSequenceMatchRegionP27829280 faldo:begin ?templateMotifSequenceMatchBeginP27829281 .
?templateMotifSequenceMatchBeginP27829281 faldo:position ?templateMotifSequenceMatchBeginPositionP27829276 ;
faldo:reference isoform:P27829-1 .
?templateMotifSequenceProfileAlignmentOperationP27829282 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
?targetMotifMatch283 faldo:location ?targetMotifMatchRegionMatch284 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029286 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27829MF_02029277 .
?targetMotifMatchRegionMatch284 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029285 .
?targetMotifMatchRegionMatchBeginMF_02029285 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029278 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02029286 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029275, 1, (STRLEN(?templateMotifCigarP27829MF_02029275) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029275, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP27829276) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1287) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029277, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029277) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029277, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1287), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029277, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029277) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029277, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1287), '}'), '')))), '[^-]', ''))) AS ?step2288) .
BIND(((?step2288 + ?targetMotifMatchRegionMatchBeginPositionMF_02029278) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs1t289) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse73) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a71')) AS ?annotation71) .
BIND(?this AS ?pfs70) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch294 faldo:location ?templateMotifSequenceMatchRegionP27829295 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829297 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27829MF_02029290 .
?templateMotifSequenceMatchRegionP27829295 faldo:begin ?templateMotifSequenceMatchBeginP27829296 .
?templateMotifSequenceMatchBeginP27829296 faldo:position ?templateMotifSequenceMatchBeginPositionP27829291 ;
faldo:reference isoform:P27829-1 .
?templateMotifSequenceProfileAlignmentOperationP27829297 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
?targetMotifMatch298 faldo:location ?targetMotifMatchRegionMatch299 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029301 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27829MF_02029292 .
?targetMotifMatchRegionMatch299 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029300 .
?targetMotifMatchRegionMatchBeginMF_02029300 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029293 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02029301 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029290, 1, (STRLEN(?templateMotifCigarP27829MF_02029290) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029290, CONCAT('^(?:-*[^-]){', STR(((216 - ?templateMotifSequenceMatchBeginPositionP27829291) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1302) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029292, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029292) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1302), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029292, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029292) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1302), '}'), '')))), '[^-]', ''))) AS ?step2303) .
BIND(((?step2303 + ?targetMotifMatchRegionMatchBeginPositionMF_02029293) - 1) AS ?thisPositionOn82) .
BIND(?thisPositionOn82 AS ?thisPositionOn83) .
BIND(?this AS ?pfs1t304) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse80) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn82, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a78')) AS ?annotation78) .
BIND(?this AS ?pfs77) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch309 faldo:location ?templateMotifSequenceMatchRegionP27829310 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829312 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27829MF_02029305 .
?templateMotifSequenceMatchRegionP27829310 faldo:begin ?templateMotifSequenceMatchBeginP27829311 .
?templateMotifSequenceMatchBeginP27829311 faldo:position ?templateMotifSequenceMatchBeginPositionP27829306 ;
faldo:reference isoform:P27829-1 .
?templateMotifSequenceProfileAlignmentOperationP27829312 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
?targetMotifMatch313 faldo:location ?targetMotifMatchRegionMatch314 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029316 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27829MF_02029307 .
?targetMotifMatchRegionMatch314 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029315 .
?targetMotifMatchRegionMatchBeginMF_02029315 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029308 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02029316 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029305, 1, (STRLEN(?templateMotifCigarP27829MF_02029305) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029305, CONCAT('^(?:-*[^-]){', STR(((219 - ?templateMotifSequenceMatchBeginPositionP27829306) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1317) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029307, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029307) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029307, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1317), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029307, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029307) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029307, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1317), '}'), '')))), '[^-]', ''))) AS ?step2318) .
BIND(((?step2318 + ?targetMotifMatchRegionMatchBeginPositionMF_02029308) - 1) AS ?thisPositionOn89) .
BIND(?thisPositionOn89 AS ?thisPositionOn90) .
BIND(?this AS ?pfs1t319) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse87) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn89, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a85')) AS ?annotation85) .
BIND(?this AS ?pfs84) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch324 faldo:location ?templateMotifSequenceMatchRegionP27829325 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829327 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27829MF_02029320 .
?templateMotifSequenceMatchRegionP27829325 faldo:begin ?templateMotifSequenceMatchBeginP27829326 .
?templateMotifSequenceMatchBeginP27829326 faldo:position ?templateMotifSequenceMatchBeginPositionP27829321 ;
faldo:reference isoform:P27829-1 .
?templateMotifSequenceProfileAlignmentOperationP27829327 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
?targetMotifMatch328 faldo:location ?targetMotifMatchRegionMatch329 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029331 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27829MF_02029322 .
?targetMotifMatchRegionMatch329 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029330 .
?targetMotifMatchRegionMatchBeginMF_02029330 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029323 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02029331 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029320, 1, (STRLEN(?templateMotifCigarP27829MF_02029320) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029320, CONCAT('^(?:-*[^-]){', STR(((250 - ?templateMotifSequenceMatchBeginPositionP27829321) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1332) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029322, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029322) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029322, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1332), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029322, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029322) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029322, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1332), '}'), '')))), '[^-]', ''))) AS ?step2333) .
BIND(((?step2333 + ?targetMotifMatchRegionMatchBeginPositionMF_02029323) - 1) AS ?thisPositionOn96) .
BIND(?thisPositionOn96 AS ?thisPositionOn97) .
BIND(?this AS ?pfs1t334) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse94) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn96, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a92')) AS ?annotation92) .
BIND(?this AS ?pfs91) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch339 faldo:location ?templateMotifSequenceMatchRegionP27829340 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829342 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27829MF_02029335 .
?templateMotifSequenceMatchRegionP27829340 faldo:begin ?templateMotifSequenceMatchBeginP27829341 .
?templateMotifSequenceMatchBeginP27829341 faldo:position ?templateMotifSequenceMatchBeginPositionP27829336 ;
faldo:reference isoform:P27829-1 .
?templateMotifSequenceProfileAlignmentOperationP27829342 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
?targetMotifMatch343 faldo:location ?targetMotifMatchRegionMatch344 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029346 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27829MF_02029337 .
?targetMotifMatchRegionMatch344 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029345 .
?targetMotifMatchRegionMatchBeginMF_02029345 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029338 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02029346 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029335, 1, (STRLEN(?templateMotifCigarP27829MF_02029335) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029335, CONCAT('^(?:-*[^-]){', STR(((252 - ?templateMotifSequenceMatchBeginPositionP27829336) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1347) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029337, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029337) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029337, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1347), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029337, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029337) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029337, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1347), '}'), '')))), '[^-]', ''))) AS ?step2348) .
BIND(((?step2348 + ?targetMotifMatchRegionMatchBeginPositionMF_02029338) - 1) AS ?thisPositionOn103) .
BIND(?thisPositionOn103 AS ?thisPositionOn104) .
BIND(?this AS ?pfs1t349) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse101) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn103, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a99')) AS ?annotation99) .
BIND(?this AS ?pfs98) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch354 faldo:location ?templateMotifSequenceMatchRegionP27829355 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829357 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27829MF_02029350 .
?templateMotifSequenceMatchRegionP27829355 faldo:begin ?templateMotifSequenceMatchBeginP27829356 .
?templateMotifSequenceMatchBeginP27829356 faldo:position ?templateMotifSequenceMatchBeginPositionP27829351 ;
faldo:reference isoform:P27829-1 .
?templateMotifSequenceProfileAlignmentOperationP27829357 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
?targetMotifMatch358 faldo:location ?targetMotifMatchRegionMatch359 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029361 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27829MF_02029352 .
?targetMotifMatchRegionMatch359 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029360 .
?targetMotifMatchRegionMatchBeginMF_02029360 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029353 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02029361 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029350, 1, (STRLEN(?templateMotifCigarP27829MF_02029350) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029350, CONCAT('^(?:-*[^-]){', STR(((263 - ?templateMotifSequenceMatchBeginPositionP27829351) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1362) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029352, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029352) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029352, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1362), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029352, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029352) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029352, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1362), '}'), '')))), '[^-]', ''))) AS ?step2363) .
BIND(((?step2363 + ?targetMotifMatchRegionMatchBeginPositionMF_02029353) - 1) AS ?thisPositionOn110) .
BIND(?thisPositionOn110 AS ?thisPositionOn111) .
BIND(?this AS ?pfs1t364) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfsb107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfse108) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn110, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a106')) AS ?annotation106) .
BIND(?this AS ?pfs105) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch369 faldo:location ?templateMotifSequenceMatchRegionP27829370 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829372 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27829MF_02029365 .
?templateMotifSequenceMatchRegionP27829370 faldo:begin ?templateMotifSequenceMatchBeginP27829371 .
?templateMotifSequenceMatchBeginP27829371 faldo:position ?templateMotifSequenceMatchBeginPositionP27829366 ;
faldo:reference isoform:P27829-1 .
?templateMotifSequenceProfileAlignmentOperationP27829372 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
?targetMotifMatch373 faldo:location ?targetMotifMatchRegionMatch374 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029376 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27829MF_02029367 .
?targetMotifMatchRegionMatch374 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029375 .
?targetMotifMatchRegionMatchBeginMF_02029375 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029368 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02029376 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029365, 1, (STRLEN(?templateMotifCigarP27829MF_02029365) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029365, CONCAT('^(?:-*[^-]){', STR(((330 - ?templateMotifSequenceMatchBeginPositionP27829366) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1377) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029367, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029367) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1377), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029367, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029367) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1377), '}'), '')))), '[^-]', ''))) AS ?step2378) .
BIND(((?step2378 + ?targetMotifMatchRegionMatchBeginPositionMF_02029368) - 1) AS ?thisPositionOn117) .
BIND(?thisPositionOn117 AS ?thisPositionOn118) .
BIND(?this AS ?pfs1t379) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfsb114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn118))) AS ?pfse115) .
FILTER (REGEX('[FY]', SUBSTR(?thisSequenceValue, ?thisPositionOn117, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a113')) AS ?annotation113) .
BIND(?this AS ?pfs112) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch384 faldo:location ?templateMotifSequenceMatchRegionP27829385 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829387 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27829MF_02029380 .
?templateMotifSequenceMatchRegionP27829385 faldo:begin ?templateMotifSequenceMatchBeginP27829386 .
?templateMotifSequenceMatchBeginP27829386 faldo:position ?templateMotifSequenceMatchBeginPositionP27829381 ;
faldo:reference isoform:P27829-1 .
?templateMotifSequenceProfileAlignmentOperationP27829387 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
?targetMotifMatch388 faldo:location ?targetMotifMatchRegionMatch389 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029391 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27829MF_02029382 .
?targetMotifMatchRegionMatch389 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029390 .
?targetMotifMatchRegionMatchBeginMF_02029390 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029383 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02029391 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029380, 1, (STRLEN(?templateMotifCigarP27829MF_02029380) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029380, CONCAT('^(?:-*[^-]){', STR(((331 - ?templateMotifSequenceMatchBeginPositionP27829381) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1392) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029382, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029382) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029382, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1392), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029382, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029382) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029382, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1392), '}'), '')))), '[^-]', ''))) AS ?step2393) .
BIND(((?step2393 + ?targetMotifMatchRegionMatchBeginPositionMF_02029383) - 1) AS ?thisPositionOn124) .
BIND(?thisPositionOn124 AS ?thisPositionOn125) .
BIND(?this AS ?pfs1t394) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn124))) AS ?pfsb121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn125))) AS ?pfse122) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn124, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a120')) AS ?annotation120) .
BIND(?this AS ?pfs119) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch399 faldo:location ?templateMotifSequenceMatchRegionP27829400 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829402 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27829MF_02029395 .
?templateMotifSequenceMatchRegionP27829400 faldo:begin ?templateMotifSequenceMatchBeginP27829401 .
?templateMotifSequenceMatchBeginP27829401 faldo:position ?templateMotifSequenceMatchBeginPositionP27829396 ;
faldo:reference isoform:P27829-1 .
?templateMotifSequenceProfileAlignmentOperationP27829402 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
?targetMotifMatch403 faldo:location ?targetMotifMatchRegionMatch404 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029406 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27829MF_02029397 .
?targetMotifMatchRegionMatch404 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029405 .
?targetMotifMatchRegionMatchBeginMF_02029405 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029398 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02029406 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029395, 1, (STRLEN(?templateMotifCigarP27829MF_02029395) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029395, CONCAT('^(?:-*[^-]){', STR(((338 - ?templateMotifSequenceMatchBeginPositionP27829396) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1407) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029397, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029397) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029397, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1407), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029397, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029397) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029397, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1407), '}'), '')))), '[^-]', ''))) AS ?step2408) .
BIND(((?step2408 + ?targetMotifMatchRegionMatchBeginPositionMF_02029398) - 1) AS ?thisPositionOn131) .
BIND(?thisPositionOn131 AS ?thisPositionOn132) .
BIND(?this AS ?pfs1t409) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn131))) AS ?pfsb128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn132))) AS ?pfse129) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn131, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a127')) AS ?annotation127) .
BIND(?this AS ?pfs126) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch414 faldo:location ?templateMotifSequenceMatchRegionP27829415 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP27829417 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP27829MF_02029410 .
?templateMotifSequenceMatchRegionP27829415 faldo:begin ?templateMotifSequenceMatchBeginP27829416 .
?templateMotifSequenceMatchBeginP27829416 faldo:position ?templateMotifSequenceMatchBeginPositionP27829411 ;
faldo:reference isoform:P27829-1 .
?templateMotifSequenceProfileAlignmentOperationP27829417 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
?targetMotifMatch418 faldo:location ?targetMotifMatchRegionMatch419 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02029421 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP27829MF_02029412 .
?targetMotifMatchRegionMatch419 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02029420 .
?targetMotifMatchRegionMatchBeginMF_02029420 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02029413 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02029421 edam:has_input signature:MF_02029 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP27829MF_02029410, 1, (STRLEN(?templateMotifCigarP27829MF_02029410) - STRLEN(REPLACE(?templateMotifCigarP27829MF_02029410, CONCAT('^(?:-*[^-]){', STR(((416 - ?templateMotifSequenceMatchBeginPositionP27829411) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1422) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP27829MF_02029412, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029412) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029412, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1422), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP27829MF_02029412, 1, (STRLEN(?targetMotifMatchCigarP27829MF_02029412) - STRLEN(REPLACE(?targetMotifMatchCigarP27829MF_02029412, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1422), '}'), '')))), '[^-]', ''))) AS ?step2423) .
BIND(((?step2423 + ?targetMotifMatchRegionMatchBeginPositionMF_02029413) - 1) AS ?thisPositionOn138) .
BIND(?thisPositionOn138 AS ?thisPositionOn139) .
BIND(?this AS ?pfs1t424) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn138))) AS ?pfsb135) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn139))) AS ?pfse136) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn138, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02029a134')) AS ?annotation134) .
BIND(?this AS ?pfs133) .
}
}
"xsd:string |
