| http://purl.uniprot.org/unirules/MF_02121#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:753032 up:source unirule:MF_02121 .
_:753033 up:source unirule:MF_02121 .
_:753034 up:source unirule:MF_02121 .
_:753035 up:source unirule:MF_02121 .
_:753036 up:source unirule:MF_02121 .
_:753037 up:source unirule:MF_02121 .
_:753038 up:source unirule:MF_02121 .
_:753039 up:source unirule:MF_02121 .
_:753040 up:source unirule:MF_02121 .
_:753041 up:source unirule:MF_02121 .
_:753042 up:source unirule:MF_02121 .
_:753043 up:source unirule:MF_02121 .
_:753044 up:source unirule:MF_02121 .
_:753045 up:source unirule:MF_02121 .
_:753046 up:source unirule:MF_02121 .
_:753047 up:source unirule:MF_02121 .
_:753048 up:source unirule:MF_02121 .
_:753049 up:source unirule:MF_02121 .
_:753050 up:source unirule:MF_02121 .
_:753051 up:source unirule:MF_02121 .
_:753052 up:source unirule:MF_02121 .
_:753053 up:source unirule:MF_02121 .
_:753054 up:source unirule:MF_02121 .
_:753055 up:source unirule:MF_02121 .
_:753056 up:source unirule:MF_02121 .
_:753057 up:source unirule:MF_02121 .
_:753058 up:source unirule:MF_02121 .
_:753059 up:source unirule:MF_02121 .
_:753060 up:source unirule:MF_02121 .
_:753061 up:source unirule:MF_02121 .
_:753062 up:source unirule:MF_02121 .
_:753063 up:source unirule:MF_02121 .
_:753064 up:source unirule:MF_02121 .
_:753065 up:source unirule:MF_02121 .
_:753066 up:source unirule:MF_02121 .
_:753067 up:source unirule:MF_02121 .
_:753068 up:source unirule:MF_02121 .
_:753069 up:source unirule:MF_02121 .
_:753070 up:source unirule:MF_02121 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0004073 ,
GO:0009088 ,
GO:0009089 ,
GO:0019877 ,
GO:0050661 ,
GO:0071266 ,
keyword:220 ,
keyword:28 ,
keyword:457 ,
keyword:486 ,
keyword:521 ,
keyword:560 ,
keyword:791 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.2.1.11' ;
up:fullName 'Aspartate-semialdehyde dehydrogenase' ;
up:shortName 'ASA dehydrogenase' ,
'ASADH' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Aspartate-beta-semialdehyde dehydrogenase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'asd' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 2/4.' .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-homoserine from L-aspartate: step 2/3.' .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 2/5.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the aspartate-semialdehyde dehydrogenase family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:58349 .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:58349 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:58349 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Acyl-thioester intermediate' .
?pfsb34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:58349 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:43474 .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf ?molecule63 .
?molecule63 rdfs:label 'substrate' .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
up:ligand ?ligand70 ;
rdf:type up:Binding_Site_Annotation .
?pfsb68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?ligand70 rdfs:subClassOf chebi:58349 .
?pfs73 up:annotation ?annotation74 .
?annotation74 faldo:begin ?pfsb75 ;
faldo:end ?pfse76 ;
up:ligand ?ligand77 ;
rdf:type up:Binding_Site_Annotation .
?pfsb75 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfse76 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?ligand77 rdfs:subClassOf ?molecule78 .
?molecule78 rdfs:label 'substrate' .
?pfs81 up:annotation ?annotation82 .
?annotation82 faldo:begin ?pfsb83 ;
faldo:end ?pfse84 ;
up:ligand ?ligand85 ;
rdf:type up:Binding_Site_Annotation .
?pfsb83 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfse84 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?ligand85 rdfs:subClassOf ?molecule86 .
?molecule86 rdfs:label 'substrate' .
?pfs89 up:annotation ?annotation90 .
?annotation90 faldo:begin ?pfsb91 ;
faldo:end ?pfse92 ;
up:ligand ?ligand93 ;
rdf:type up:Binding_Site_Annotation .
?pfsb91 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?pfse92 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?ligand93 rdfs:subClassOf chebi:43474 .
?pfs96 up:annotation ?annotation97 .
?annotation97 faldo:begin ?pfsb98 ;
faldo:end ?pfse99 ;
up:ligand ?ligand100 ;
rdf:type up:Binding_Site_Annotation .
?pfsb98 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?pfse99 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?ligand100 rdfs:subClassOf chebi:58349 .
?pfs103 up:annotation ?annotation104 .
?annotation104 faldo:begin ?pfsb105 ;
faldo:end ?pfse106 ;
up:ligand ?ligand107 ;
rdf:type up:Binding_Site_Annotation .
?pfsb105 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?pfse106 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?ligand107 rdfs:subClassOf ?molecule108 .
?molecule108 rdfs:label 'substrate' .
?pfs111 up:annotation ?annotation112 .
?annotation112 faldo:begin ?pfsb113 ;
faldo:end ?pfse114 ;
up:ligand ?ligand115 ;
rdf:type up:Binding_Site_Annotation .
?pfsb113 faldo:position ?thisPositionOn116 ;
rdf:type faldo:ExactPosition .
?pfse114 faldo:position ?thisPositionOn117 ;
rdf:type faldo:ExactPosition .
?ligand115 rdfs:subClassOf chebi:43474 .
?pfs118 up:annotation ?annotation119 .
?annotation119 faldo:begin ?pfsb120 ;
faldo:end ?pfse121 ;
up:ligand ?ligand122 ;
rdf:type up:Binding_Site_Annotation .
?pfsb120 faldo:position ?thisPositionOn123 ;
rdf:type faldo:ExactPosition .
?pfse121 faldo:position ?thisPositionOn124 ;
rdf:type faldo:ExactPosition .
?ligand122 rdfs:subClassOf chebi:58349 .
_:753071 a rdf:Statement ;
up:attribution _:753032 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:753072 a rdf:Statement ;
up:attribution _:753033 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:753073 a rdf:Statement ;
up:attribution _:753034 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:753074 a rdf:Statement ;
up:attribution _:753035 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:753075 a rdf:Statement ;
up:attribution _:753036 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:753076 a rdf:Statement ;
up:attribution _:753037 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:753077 a rdf:Statement ;
up:attribution _:753038 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:753078 a rdf:Statement ;
up:attribution _:753039 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:753079 a rdf:Statement ;
up:attribution _:753040 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:753080 a rdf:Statement ;
up:attribution _:753041 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:753081 a rdf:Statement ;
up:attribution _:753042 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:753082 a rdf:Statement ;
up:attribution _:753043 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:220 .
_:753083 a rdf:Statement ;
up:attribution _:753044 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:457 .
_:753084 a rdf:Statement ;
up:attribution _:753045 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:486 .
_:753085 a rdf:Statement ;
up:attribution _:753046 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:753086 a rdf:Statement ;
up:attribution _:753047 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:753087 a rdf:Statement ;
up:attribution _:753048 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:791 .
_:753088 a rdf:Statement ;
up:attribution _:753049 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004073 .
_:753089 a rdf:Statement ;
up:attribution _:753050 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050661 .
_:753090 a rdf:Statement ;
up:attribution _:753051 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0071266 .
_:753091 a rdf:Statement ;
up:attribution _:753052 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009088 .
_:753092 a rdf:Statement ;
up:attribution _:753053 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009089 .
_:753093 a rdf:Statement ;
up:attribution _:753054 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019877 .
_:753094 a rdf:Statement ;
up:source unirule:MF_02121 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:753095 a rdf:Statement ;
up:attribution _:753055 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:753096 a rdf:Statement ;
up:source unirule:MF_02121 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:753097 a rdf:Statement ;
up:attribution _:753056 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:753098 a rdf:Statement ;
up:source unirule:MF_02121 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:753099 a rdf:Statement ;
up:attribution _:753057 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:753100 a rdf:Statement ;
up:source unirule:MF_02121 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:753101 a rdf:Statement ;
up:attribution _:753058 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:753102 a rdf:Statement ;
up:source unirule:MF_02121 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:753103 a rdf:Statement ;
up:attribution _:753059 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:753104 a rdf:Statement ;
up:source unirule:MF_02121 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:753105 a rdf:Statement ;
up:attribution _:753060 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:753106 a rdf:Statement ;
up:source unirule:MF_02121 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:753107 a rdf:Statement ;
up:attribution _:753061 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:753108 a rdf:Statement ;
up:source unirule:MF_02121 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:753109 a rdf:Statement ;
up:attribution _:753062 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:753110 a rdf:Statement ;
up:source unirule:MF_02121 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:753111 a rdf:Statement ;
up:attribution _:753063 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:753112 a rdf:Statement ;
up:source unirule:MF_02121 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:753113 a rdf:Statement ;
up:attribution _:753064 ;
rdf:subject ?pfs73 ;
rdf:predicate up:annotation ;
rdf:object ?annotation74 .
_:753114 a rdf:Statement ;
up:source unirule:MF_02121 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:753115 a rdf:Statement ;
up:attribution _:753065 ;
rdf:subject ?pfs81 ;
rdf:predicate up:annotation ;
rdf:object ?annotation82 .
_:753116 a rdf:Statement ;
up:source unirule:MF_02121 ;
rdf:subject ?pfs89 ;
rdf:predicate up:annotation ;
rdf:object ?annotation90 .
_:753117 a rdf:Statement ;
up:attribution _:753066 ;
rdf:subject ?pfs89 ;
rdf:predicate up:annotation ;
rdf:object ?annotation90 .
_:753118 a rdf:Statement ;
up:source unirule:MF_02121 ;
rdf:subject ?pfs96 ;
rdf:predicate up:annotation ;
rdf:object ?annotation97 .
_:753119 a rdf:Statement ;
up:attribution _:753067 ;
rdf:subject ?pfs96 ;
rdf:predicate up:annotation ;
rdf:object ?annotation97 .
_:753120 a rdf:Statement ;
up:source unirule:MF_02121 ;
rdf:subject ?pfs103 ;
rdf:predicate up:annotation ;
rdf:object ?annotation104 .
_:753121 a rdf:Statement ;
up:attribution _:753068 ;
rdf:subject ?pfs103 ;
rdf:predicate up:annotation ;
rdf:object ?annotation104 .
_:753122 a rdf:Statement ;
up:source unirule:MF_02121 ;
rdf:subject ?pfs111 ;
rdf:predicate up:annotation ;
rdf:object ?annotation112 .
_:753123 a rdf:Statement ;
up:attribution _:753069 ;
rdf:subject ?pfs111 ;
rdf:predicate up:annotation ;
rdf:object ?annotation112 .
_:753124 a rdf:Statement ;
up:source unirule:MF_02121 ;
rdf:subject ?pfs118 ;
rdf:predicate up:annotation ;
rdf:object ?annotation119 .
_:753125 a rdf:Statement ;
up:attribution _:753070 ;
rdf:subject ?pfs118 ;
rdf:predicate up:annotation ;
rdf:object ?annotation119 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02121
#Rule MF_02121 Created by:? on:2011-06-10 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon125 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02121 .
?thisOrganism rdfs:subClassOf+ ?supertaxon125 .
BIND(URI(CONCAT(STR(?this), '#MF_02121a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02121a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02121a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02121a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02121a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02121a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02121a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_02121a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_02121a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch130 faldo:location ?templateMotifSequenceMatchRegionP0A9Q9131 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9Q9133 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9Q9MF_02121126 .
?templateMotifSequenceMatchRegionP0A9Q9131 faldo:begin ?templateMotifSequenceMatchBeginP0A9Q9132 .
?templateMotifSequenceMatchBeginP0A9Q9132 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9Q9127 ;
faldo:reference isoform:P0A9Q9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9Q9133 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
?targetMotifMatch134 faldo:location ?targetMotifMatchRegionMatch135 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02121137 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9Q9MF_02121128 .
?targetMotifMatchRegionMatch135 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02121136 .
?targetMotifMatchRegionMatchBeginMF_02121136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02121129 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02121137 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9Q9MF_02121126, 1, (STRLEN(?templateMotifCigarP0A9Q9MF_02121126) - STRLEN(REPLACE(?templateMotifCigarP0A9Q9MF_02121126, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionP0A9Q9127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121128, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121128) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121128, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121128) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) .
BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_02121129) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9Q9MF_02121126, 1, (STRLEN(?templateMotifCigarP0A9Q9MF_02121126) - STRLEN(REPLACE(?templateMotifCigarP0A9Q9MF_02121126, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionP0A9Q9127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121128, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121128) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121128, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121128) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_02121129) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER (REGEX('[RTS]G[ARNDCQEGHILKMFPSTWYVBZJUOX][VG]', SUBSTR(?thisSequenceValue, ?thisPositionOn16, (?thisPositionOn17 - ?thisPositionOn16)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02121a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch147 faldo:location ?templateMotifSequenceMatchRegionP0A9Q9148 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9Q9150 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9Q9MF_02121143 .
?templateMotifSequenceMatchRegionP0A9Q9148 faldo:begin ?templateMotifSequenceMatchBeginP0A9Q9149 .
?templateMotifSequenceMatchBeginP0A9Q9149 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9Q9144 ;
faldo:reference isoform:P0A9Q9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9Q9150 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
?targetMotifMatch151 faldo:location ?targetMotifMatchRegionMatch152 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02121154 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9Q9MF_02121145 .
?targetMotifMatchRegionMatch152 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02121153 .
?targetMotifMatchRegionMatchBeginMF_02121153 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02121146 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02121154 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9Q9MF_02121143, 1, (STRLEN(?templateMotifCigarP0A9Q9MF_02121143) - STRLEN(REPLACE(?templateMotifCigarP0A9Q9MF_02121143, CONCAT('^(?:-*[^-]){', STR(((37 - ?templateMotifSequenceMatchBeginPositionP0A9Q9144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121145, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121145) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121145, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121145) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) .
BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_02121146) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9Q9MF_02121143, 1, (STRLEN(?templateMotifCigarP0A9Q9MF_02121143) - STRLEN(REPLACE(?templateMotifCigarP0A9Q9MF_02121143, CONCAT('^(?:-*[^-]){', STR(((38 - ?templateMotifSequenceMatchBeginPositionP0A9Q9144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121145, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121145) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121145, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121145) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) .
BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_02121146) - 1) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t159) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER (REGEX('[TRNKS]S', SUBSTR(?thisSequenceValue, ?thisPositionOn23, (?thisPositionOn24 - ?thisPositionOn23)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02121a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionP0A9Q9165 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9Q9167 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9Q9MF_02121160 .
?templateMotifSequenceMatchRegionP0A9Q9165 faldo:begin ?templateMotifSequenceMatchBeginP0A9Q9166 .
?templateMotifSequenceMatchBeginP0A9Q9166 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9Q9161 ;
faldo:reference isoform:P0A9Q9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9Q9167 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02121171 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9Q9MF_02121162 .
?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02121170 .
?targetMotifMatchRegionMatchBeginMF_02121170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02121163 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02121171 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9Q9MF_02121160, 1, (STRLEN(?templateMotifCigarP0A9Q9MF_02121160) - STRLEN(REPLACE(?templateMotifCigarP0A9Q9MF_02121160, CONCAT('^(?:-*[^-]){', STR(((165 - ?templateMotifSequenceMatchBeginPositionP0A9Q9161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121162, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121162) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121162, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121162) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) .
BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_02121163) - 1) AS ?thisPositionOn30) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9Q9MF_02121160, 1, (STRLEN(?templateMotifCigarP0A9Q9MF_02121160) - STRLEN(REPLACE(?templateMotifCigarP0A9Q9MF_02121160, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionP0A9Q9161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121162, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121162) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121162, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121162) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1174), '}'), '')))), '[^-]', ''))) AS ?step2175) .
BIND(((?step2175 + ?targetMotifMatchRegionMatchBeginPositionMF_02121163) - 1) AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t176) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, (?thisPositionOn31 - ?thisPositionOn30)) = 'SG')) .
BIND(URI(CONCAT(STR(?this), '#MF_02121a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch181 faldo:location ?templateMotifSequenceMatchRegionP0A9Q9182 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9Q9184 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9Q9MF_02121177 .
?templateMotifSequenceMatchRegionP0A9Q9182 faldo:begin ?templateMotifSequenceMatchBeginP0A9Q9183 .
?templateMotifSequenceMatchBeginP0A9Q9183 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9Q9178 ;
faldo:reference isoform:P0A9Q9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9Q9184 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
?targetMotifMatch185 faldo:location ?targetMotifMatchRegionMatch186 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02121188 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9Q9MF_02121179 .
?targetMotifMatchRegionMatch186 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02121187 .
?targetMotifMatchRegionMatchBeginMF_02121187 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02121180 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02121188 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9Q9MF_02121177, 1, (STRLEN(?templateMotifCigarP0A9Q9MF_02121177) - STRLEN(REPLACE(?templateMotifCigarP0A9Q9MF_02121177, CONCAT('^(?:-*[^-]){', STR(((135 - ?templateMotifSequenceMatchBeginPositionP0A9Q9178) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121179, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121179) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121179, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121179) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121179, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1189), '}'), '')))), '[^-]', ''))) AS ?step2190) .
BIND(((?step2190 + ?targetMotifMatchRegionMatchBeginPositionMF_02121180) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t191) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_02121a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch196 faldo:location ?templateMotifSequenceMatchRegionP0A9Q9197 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9Q9199 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9Q9MF_02121192 .
?templateMotifSequenceMatchRegionP0A9Q9197 faldo:begin ?templateMotifSequenceMatchBeginP0A9Q9198 .
?templateMotifSequenceMatchBeginP0A9Q9198 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9Q9193 ;
faldo:reference isoform:P0A9Q9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9Q9199 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
?targetMotifMatch200 faldo:location ?targetMotifMatchRegionMatch201 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02121203 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9Q9MF_02121194 .
?targetMotifMatchRegionMatch201 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02121202 .
?targetMotifMatchRegionMatchBeginMF_02121202 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02121195 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02121203 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9Q9MF_02121192, 1, (STRLEN(?templateMotifCigarP0A9Q9MF_02121192) - STRLEN(REPLACE(?templateMotifCigarP0A9Q9MF_02121192, CONCAT('^(?:-*[^-]){', STR(((274 - ?templateMotifSequenceMatchBeginPositionP0A9Q9193) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1204) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121194, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121194) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121194, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121194) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121194, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1204), '}'), '')))), '[^-]', ''))) AS ?step2205) .
BIND(((?step2205 + ?targetMotifMatchRegionMatchBeginPositionMF_02121195) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t206) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02121a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch211 faldo:location ?templateMotifSequenceMatchRegionP0A9Q9212 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9Q9214 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9Q9MF_02121207 .
?templateMotifSequenceMatchRegionP0A9Q9212 faldo:begin ?templateMotifSequenceMatchBeginP0A9Q9213 .
?templateMotifSequenceMatchBeginP0A9Q9213 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9Q9208 ;
faldo:reference isoform:P0A9Q9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9Q9214 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
?targetMotifMatch215 faldo:location ?targetMotifMatchRegionMatch216 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02121218 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9Q9MF_02121209 .
?targetMotifMatchRegionMatch216 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02121217 .
?targetMotifMatchRegionMatchBeginMF_02121217 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02121210 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02121218 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9Q9MF_02121207, 1, (STRLEN(?templateMotifCigarP0A9Q9MF_02121207) - STRLEN(REPLACE(?templateMotifCigarP0A9Q9MF_02121207, CONCAT('^(?:-*[^-]){', STR(((73 - ?templateMotifSequenceMatchBeginPositionP0A9Q9208) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1219) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121209, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121209) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121209, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121209) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121209, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), '')))), '[^-]', ''))) AS ?step2220) .
BIND(((?step2220 + ?targetMotifMatchRegionMatchBeginPositionMF_02121210) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t221) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_02121a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch226 faldo:location ?templateMotifSequenceMatchRegionP0A9Q9227 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9Q9229 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9Q9MF_02121222 .
?templateMotifSequenceMatchRegionP0A9Q9227 faldo:begin ?templateMotifSequenceMatchBeginP0A9Q9228 .
?templateMotifSequenceMatchBeginP0A9Q9228 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9Q9223 ;
faldo:reference isoform:P0A9Q9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9Q9229 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
?targetMotifMatch230 faldo:location ?targetMotifMatchRegionMatch231 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02121233 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9Q9MF_02121224 .
?targetMotifMatchRegionMatch231 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02121232 .
?targetMotifMatchRegionMatchBeginMF_02121232 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02121225 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02121233 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9Q9MF_02121222, 1, (STRLEN(?templateMotifCigarP0A9Q9MF_02121222) - STRLEN(REPLACE(?templateMotifCigarP0A9Q9MF_02121222, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionP0A9Q9223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121224, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121224) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121224, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121224) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) .
BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_02121225) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t236) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02121a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch241 faldo:location ?templateMotifSequenceMatchRegionP0A9Q9242 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9Q9244 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9Q9MF_02121237 .
?templateMotifSequenceMatchRegionP0A9Q9242 faldo:begin ?templateMotifSequenceMatchBeginP0A9Q9243 .
?templateMotifSequenceMatchBeginP0A9Q9243 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9Q9238 ;
faldo:reference isoform:P0A9Q9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9Q9244 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
?targetMotifMatch245 faldo:location ?targetMotifMatchRegionMatch246 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02121248 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9Q9MF_02121239 .
?targetMotifMatchRegionMatch246 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02121247 .
?targetMotifMatchRegionMatchBeginMF_02121247 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02121240 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02121248 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9Q9MF_02121237, 1, (STRLEN(?templateMotifCigarP0A9Q9MF_02121237) - STRLEN(REPLACE(?templateMotifCigarP0A9Q9MF_02121237, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionP0A9Q9238) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1249) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121239, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121239) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121239, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121239) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121239, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1249), '}'), '')))), '[^-]', ''))) AS ?step2250) .
BIND(((?step2250 + ?targetMotifMatchRegionMatchBeginPositionMF_02121240) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs1t251) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_02121a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch256 faldo:location ?templateMotifSequenceMatchRegionP0A9Q9257 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9Q9259 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9Q9MF_02121252 .
?templateMotifSequenceMatchRegionP0A9Q9257 faldo:begin ?templateMotifSequenceMatchBeginP0A9Q9258 .
?templateMotifSequenceMatchBeginP0A9Q9258 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9Q9253 ;
faldo:reference isoform:P0A9Q9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9Q9259 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
?targetMotifMatch260 faldo:location ?targetMotifMatchRegionMatch261 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02121263 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9Q9MF_02121254 .
?targetMotifMatchRegionMatch261 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02121262 .
?targetMotifMatchRegionMatchBeginMF_02121262 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02121255 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02121263 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9Q9MF_02121252, 1, (STRLEN(?templateMotifCigarP0A9Q9MF_02121252) - STRLEN(REPLACE(?templateMotifCigarP0A9Q9MF_02121252, CONCAT('^(?:-*[^-]){', STR(((193 - ?templateMotifSequenceMatchBeginPositionP0A9Q9253) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1264) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121254, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121254) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121254, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121254) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121254, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1264), '}'), '')))), '[^-]', ''))) AS ?step2265) .
BIND(((?step2265 + ?targetMotifMatchRegionMatchBeginPositionMF_02121255) - 1) AS ?thisPositionOn71) .
BIND(?thisPositionOn71 AS ?thisPositionOn72) .
BIND(?this AS ?pfs1t266) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfse69) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn71, 1) = 'P')) .
BIND(URI(CONCAT(STR(?this), '#MF_02121a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch271 faldo:location ?templateMotifSequenceMatchRegionP0A9Q9272 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9Q9274 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9Q9MF_02121267 .
?templateMotifSequenceMatchRegionP0A9Q9272 faldo:begin ?templateMotifSequenceMatchBeginP0A9Q9273 .
?templateMotifSequenceMatchBeginP0A9Q9273 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9Q9268 ;
faldo:reference isoform:P0A9Q9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9Q9274 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
?targetMotifMatch275 faldo:location ?targetMotifMatchRegionMatch276 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02121278 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9Q9MF_02121269 .
?targetMotifMatchRegionMatch276 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02121277 .
?targetMotifMatchRegionMatchBeginMF_02121277 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02121270 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02121278 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9Q9MF_02121267, 1, (STRLEN(?templateMotifCigarP0A9Q9MF_02121267) - STRLEN(REPLACE(?templateMotifCigarP0A9Q9MF_02121267, CONCAT('^(?:-*[^-]){', STR(((267 - ?templateMotifSequenceMatchBeginPositionP0A9Q9268) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1279) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121269, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121269) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121269, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121269) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121269, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1279), '}'), '')))), '[^-]', ''))) AS ?step2280) .
BIND(((?step2280 + ?targetMotifMatchRegionMatchBeginPositionMF_02121270) - 1) AS ?thisPositionOn79) .
BIND(?thisPositionOn79 AS ?thisPositionOn80) .
BIND(?this AS ?pfs1t281) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfsb75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfse76) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn79, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02121a74')) AS ?annotation74) .
BIND(?this AS ?pfs73) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch287 faldo:location ?templateMotifSequenceMatchRegionP0A9Q9288 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9Q9290 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9Q9MF_02121283 .
?templateMotifSequenceMatchRegionP0A9Q9288 faldo:begin ?templateMotifSequenceMatchBeginP0A9Q9289 .
?templateMotifSequenceMatchBeginP0A9Q9289 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9Q9284 ;
faldo:reference isoform:P0A9Q9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9Q9290 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
?targetMotifMatch291 faldo:location ?targetMotifMatchRegionMatch292 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02121294 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9Q9MF_02121285 .
?targetMotifMatchRegionMatch292 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02121293 .
?targetMotifMatchRegionMatchBeginMF_02121293 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02121286 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02121294 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon282 {taxon:2157 taxon:203691}
?thisOrganism rdfs:subClassOf+ ?supertaxon282 .
})) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9Q9MF_02121283, 1, (STRLEN(?templateMotifCigarP0A9Q9MF_02121283) - STRLEN(REPLACE(?templateMotifCigarP0A9Q9MF_02121283, CONCAT('^(?:-*[^-]){', STR(((241 - ?templateMotifSequenceMatchBeginPositionP0A9Q9284) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1295) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121285, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121285) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121285, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1295), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121285, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121285) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121285, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1295), '}'), '')))), '[^-]', ''))) AS ?step2296) .
BIND(((?step2296 + ?targetMotifMatchRegionMatchBeginPositionMF_02121286) - 1) AS ?thisPositionOn87) .
BIND(?thisPositionOn87 AS ?thisPositionOn88) .
BIND(?this AS ?pfs2t297) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse84) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02121a82')) AS ?annotation82) .
BIND(?this AS ?pfs81) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch303 faldo:location ?templateMotifSequenceMatchRegionP0A9Q9304 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9Q9306 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9Q9MF_02121299 .
?templateMotifSequenceMatchRegionP0A9Q9304 faldo:begin ?templateMotifSequenceMatchBeginP0A9Q9305 .
?templateMotifSequenceMatchBeginP0A9Q9305 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9Q9300 ;
faldo:reference isoform:P0A9Q9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9Q9306 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
?targetMotifMatch307 faldo:location ?targetMotifMatchRegionMatch308 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02121310 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9Q9MF_02121301 .
?targetMotifMatchRegionMatch308 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02121309 .
?targetMotifMatchRegionMatchBeginMF_02121309 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02121302 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02121310 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon298 {taxon:2157 taxon:203691}
?thisOrganism rdfs:subClassOf+ ?supertaxon298 .
})) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9Q9MF_02121299, 1, (STRLEN(?templateMotifCigarP0A9Q9MF_02121299) - STRLEN(REPLACE(?templateMotifCigarP0A9Q9MF_02121299, CONCAT('^(?:-*[^-]){', STR(((244 - ?templateMotifSequenceMatchBeginPositionP0A9Q9300) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1311) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121301, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121301) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121301, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1311), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121301, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121301) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121301, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1311), '}'), '')))), '[^-]', ''))) AS ?step2312) .
BIND(((?step2312 + ?targetMotifMatchRegionMatchBeginPositionMF_02121302) - 1) AS ?thisPositionOn94) .
BIND(?thisPositionOn94 AS ?thisPositionOn95) .
BIND(?this AS ?pfs2t313) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse92) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn94, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02121a90')) AS ?annotation90) .
BIND(?this AS ?pfs89) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch319 faldo:location ?templateMotifSequenceMatchRegionP0A9Q9320 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A9Q9322 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A9Q9MF_02121315 .
?templateMotifSequenceMatchRegionP0A9Q9320 faldo:begin ?templateMotifSequenceMatchBeginP0A9Q9321 .
?templateMotifSequenceMatchBeginP0A9Q9321 faldo:position ?templateMotifSequenceMatchBeginPositionP0A9Q9316 ;
faldo:reference isoform:P0A9Q9-1 .
?templateMotifSequenceProfileAlignmentOperationP0A9Q9322 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
?targetMotifMatch323 faldo:location ?targetMotifMatchRegionMatch324 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02121326 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A9Q9MF_02121317 .
?targetMotifMatchRegionMatch324 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02121325 .
?targetMotifMatchRegionMatchBeginMF_02121325 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02121318 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02121326 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon314 {taxon:2157 taxon:203691}
?thisOrganism rdfs:subClassOf+ ?supertaxon314 .
})) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A9Q9MF_02121315, 1, (STRLEN(?templateMotifCigarP0A9Q9MF_02121315) - STRLEN(REPLACE(?templateMotifCigarP0A9Q9MF_02121315, CONCAT('^(?:-*[^-]){', STR(((350 - ?templateMotifSequenceMatchBeginPositionP0A9Q9316) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1327) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121317, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121317) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A9Q9MF_02121317, 1, (STRLEN(?targetMotifMatchCigarP0A9Q9MF_02121317) - STRLEN(REPLACE(?targetMotifMatchCigarP0A9Q9MF_02121317, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1327), '}'), '')))), '[^-]', ''))) AS ?step2328) .
BIND(((?step2328 + ?targetMotifMatchRegionMatchBeginPositionMF_02121318) - 1) AS ?thisPositionOn101) .
BIND(?thisPositionOn101 AS ?thisPositionOn102) .
BIND(?this AS ?pfs2t329) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfsb98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfse99) .
FILTER (REGEX('[QN]', SUBSTR(?thisSequenceValue, ?thisPositionOn101, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02121a97')) AS ?annotation97) .
BIND(?this AS ?pfs96) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch335 faldo:location ?templateMotifSequenceMatchRegionQ57658336 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57658338 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57658MF_02121331 .
?templateMotifSequenceMatchRegionQ57658336 faldo:begin ?templateMotifSequenceMatchBeginQ57658337 .
?templateMotifSequenceMatchBeginQ57658337 faldo:position ?templateMotifSequenceMatchBeginPositionQ57658332 ;
faldo:reference isoform:Q57658-1 .
?templateMotifSequenceProfileAlignmentOperationQ57658338 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
?targetMotifMatch339 faldo:location ?targetMotifMatchRegionMatch340 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02121342 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57658MF_02121333 .
?targetMotifMatchRegionMatch340 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02121341 .
?targetMotifMatchRegionMatchBeginMF_02121341 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02121334 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02121342 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon330 {taxon:2157 taxon:203691}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon330 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57658MF_02121331, 1, (STRLEN(?templateMotifCigarQ57658MF_02121331) - STRLEN(REPLACE(?templateMotifCigarQ57658MF_02121331, CONCAT('^(?:-*[^-]){', STR(((210 - ?templateMotifSequenceMatchBeginPositionQ57658332) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1343) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57658MF_02121333, 1, (STRLEN(?targetMotifMatchCigarQ57658MF_02121333) - STRLEN(REPLACE(?targetMotifMatchCigarQ57658MF_02121333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1343), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57658MF_02121333, 1, (STRLEN(?targetMotifMatchCigarQ57658MF_02121333) - STRLEN(REPLACE(?targetMotifMatchCigarQ57658MF_02121333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1343), '}'), '')))), '[^-]', ''))) AS ?step2344) .
BIND(((?step2344 + ?targetMotifMatchRegionMatchBeginPositionMF_02121334) - 1) AS ?thisPositionOn109) .
BIND(?thisPositionOn109 AS ?thisPositionOn110) .
BIND(?this AS ?pfs3t345) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfsb105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfse106) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn109, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02121a104')) AS ?annotation104) .
BIND(?this AS ?pfs103) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch351 faldo:location ?templateMotifSequenceMatchRegionQ57658352 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57658354 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57658MF_02121347 .
?templateMotifSequenceMatchRegionQ57658352 faldo:begin ?templateMotifSequenceMatchBeginQ57658353 .
?templateMotifSequenceMatchBeginQ57658353 faldo:position ?templateMotifSequenceMatchBeginPositionQ57658348 ;
faldo:reference isoform:Q57658-1 .
?templateMotifSequenceProfileAlignmentOperationQ57658354 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
?targetMotifMatch355 faldo:location ?targetMotifMatchRegionMatch356 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02121358 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57658MF_02121349 .
?targetMotifMatchRegionMatch356 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02121357 .
?targetMotifMatchRegionMatchBeginMF_02121357 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02121350 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02121358 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon346 {taxon:2157 taxon:203691}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon346 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57658MF_02121347, 1, (STRLEN(?templateMotifCigarQ57658MF_02121347) - STRLEN(REPLACE(?templateMotifCigarQ57658MF_02121347, CONCAT('^(?:-*[^-]){', STR(((213 - ?templateMotifSequenceMatchBeginPositionQ57658348) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1359) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57658MF_02121349, 1, (STRLEN(?targetMotifMatchCigarQ57658MF_02121349) - STRLEN(REPLACE(?targetMotifMatchCigarQ57658MF_02121349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1359), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57658MF_02121349, 1, (STRLEN(?targetMotifMatchCigarQ57658MF_02121349) - STRLEN(REPLACE(?targetMotifMatchCigarQ57658MF_02121349, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1359), '}'), '')))), '[^-]', ''))) AS ?step2360) .
BIND(((?step2360 + ?targetMotifMatchRegionMatchBeginPositionMF_02121350) - 1) AS ?thisPositionOn116) .
BIND(?thisPositionOn116 AS ?thisPositionOn117) .
BIND(?this AS ?pfs3t361) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfsb113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfse114) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn116, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02121a112')) AS ?annotation112) .
BIND(?this AS ?pfs111) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch367 faldo:location ?templateMotifSequenceMatchRegionQ57658368 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57658370 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57658MF_02121363 .
?templateMotifSequenceMatchRegionQ57658368 faldo:begin ?templateMotifSequenceMatchBeginQ57658369 .
?templateMotifSequenceMatchBeginQ57658369 faldo:position ?templateMotifSequenceMatchBeginPositionQ57658364 ;
faldo:reference isoform:Q57658-1 .
?templateMotifSequenceProfileAlignmentOperationQ57658370 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
?targetMotifMatch371 faldo:location ?targetMotifMatchRegionMatch372 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02121374 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57658MF_02121365 .
?targetMotifMatchRegionMatch372 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02121373 .
?targetMotifMatchRegionMatchBeginMF_02121373 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02121366 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02121374 edam:has_input signature:MF_02121 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon362 {taxon:2157 taxon:203691}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon362 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57658MF_02121363, 1, (STRLEN(?templateMotifCigarQ57658MF_02121363) - STRLEN(REPLACE(?templateMotifCigarQ57658MF_02121363, CONCAT('^(?:-*[^-]){', STR(((333 - ?templateMotifSequenceMatchBeginPositionQ57658364) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1375) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57658MF_02121365, 1, (STRLEN(?targetMotifMatchCigarQ57658MF_02121365) - STRLEN(REPLACE(?targetMotifMatchCigarQ57658MF_02121365, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1375), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57658MF_02121365, 1, (STRLEN(?targetMotifMatchCigarQ57658MF_02121365) - STRLEN(REPLACE(?targetMotifMatchCigarQ57658MF_02121365, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1375), '}'), '')))), '[^-]', ''))) AS ?step2376) .
BIND(((?step2376 + ?targetMotifMatchRegionMatchBeginPositionMF_02121366) - 1) AS ?thisPositionOn123) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57658MF_02121363, 1, (STRLEN(?templateMotifCigarQ57658MF_02121363) - STRLEN(REPLACE(?templateMotifCigarQ57658MF_02121363, CONCAT('^(?:-*[^-]){', STR(((334 - ?templateMotifSequenceMatchBeginPositionQ57658364) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1377) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57658MF_02121365, 1, (STRLEN(?targetMotifMatchCigarQ57658MF_02121365) - STRLEN(REPLACE(?targetMotifMatchCigarQ57658MF_02121365, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1377), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57658MF_02121365, 1, (STRLEN(?targetMotifMatchCigarQ57658MF_02121365) - STRLEN(REPLACE(?targetMotifMatchCigarQ57658MF_02121365, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1377), '}'), '')))), '[^-]', ''))) AS ?step2378) .
BIND(((?step2378 + ?targetMotifMatchRegionMatchBeginPositionMF_02121366) - 1) AS ?thisPositionOn124) .
BIND(?this AS ?pfs3t379) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn123))) AS ?pfsb120) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn124))) AS ?pfse121) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn123, (?thisPositionOn124 - ?thisPositionOn123)) = 'NT')) .
BIND(URI(CONCAT(STR(?this), '#MF_02121a119')) AS ?annotation119) .
BIND(?this AS ?pfs118) .
}
}
"xsd:string |
