| http://purl.uniprot.org/unirules/MF_02247#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:777989 up:source unirule:MF_02247 .
_:777990 up:source unirule:MF_02247 .
_:777991 up:source unirule:MF_02247 .
_:777992 up:source unirule:MF_02247 .
_:777993 up:source unirule:MF_02247 .
_:777994 up:source unirule:MF_02247 .
_:777995 up:source unirule:MF_02247 .
_:777996 up:source unirule:MF_02247 .
_:777997 up:source unirule:MF_02247 .
_:777998 up:source unirule:MF_02247 .
_:777999 up:source unirule:MF_02247 .
_:778000 up:source unirule:MF_02247 .
_:778001 up:source unirule:MF_02247 .
_:778002 up:source unirule:MF_02247 .
_:778003 up:source unirule:MF_02247 .
_:778004 up:source unirule:MF_02247 .
_:778005 up:source unirule:MF_02247 .
_:778006 up:source unirule:MF_02247 .
_:778007 up:source unirule:MF_02247 .
_:778008 up:source unirule:MF_02247 .
_:778009 up:source unirule:MF_02247 .
_:778010 up:source unirule:MF_02247 .
_:778011 up:source unirule:MF_02247 .
_:778012 up:source unirule:MF_02247 .
_:778013 up:source unirule:MF_02247 .
_:778014 up:source unirule:MF_02247 .
_:778015 up:source unirule:MF_02247 .
_:778016 up:source unirule:MF_02247 .
_:778017 up:source unirule:MF_02247 .
_:778018 up:source unirule:MF_02247 .
_:778019 up:source unirule:MF_02247 .
_:778020 up:source unirule:MF_02247 .
_:778021 up:source unirule:MF_02247 .
_:778022 up:source unirule:MF_02247 .
_:778023 up:source unirule:MF_02247 .
_:778024 up:source unirule:MF_02247 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0005524 ,
GO:0016620 ,
GO:0031177 ,
GO:0050661 ,
keyword:521 ,
keyword:547 ,
keyword:560 ,
keyword:596 ,
keyword:597 ,
keyword:67 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.2.1.-' ;
up:fullName 'Carboxylic acid reductase' ;
up:shortName 'CAR' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'ATP/NADPH-dependent carboxylic acid reductase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'car' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the ATP- and NADPH-dependent reduction of carboxylic acids to the corresponding aldehydes.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity .
?annotation6 up:cofactor chebi:47942 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 phosphopantetheine covalently.' .
?annotation7 a up:Domain_Annotation ;
rdfs:comment 'The N-terminal domain likely catalyzes substrate activation by formation of an initial acyl-AMP intermediate, the central region contains the phosphopantetheine attachment site, and the C-terminal domain catalyzes the reduction by NADPH of the intermediate thioester formed from the attack of the phosphopantetheine thiol at the carbonyl carbon of acyl-AMP.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the ATP-dependent AMP-binding enzyme family. Carboxylic acid reductase subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:456215 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:456215 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:58349 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:58349 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:58349 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:456215 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:456215 .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf chebi:456215 .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
up:ligand ?ligand69 ;
rdf:type up:Binding_Site_Annotation .
?pfsb67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?ligand69 rdfs:subClassOf chebi:456215 .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
up:ligand ?ligand76 ;
rdf:type up:Binding_Site_Annotation .
?pfsb74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand76 rdfs:subClassOf chebi:456215 .
?pfs79 up:annotation ?annotation80 .
?annotation80 faldo:begin ?pfsb81 ;
faldo:end ?pfse82 ;
up:ligand ?ligand83 ;
rdf:type up:Binding_Site_Annotation .
?pfsb81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?ligand83 rdfs:subClassOf chebi:456215 .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
up:ligand ?ligand90 ;
rdf:type up:Binding_Site_Annotation .
?pfsb88 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?ligand90 rdfs:subClassOf chebi:58349 .
?pfs93 up:annotation ?annotation94 .
?annotation94 faldo:begin ?pfsb95 ;
faldo:end ?pfse96 ;
up:ligand ?ligand97 ;
rdf:type up:Binding_Site_Annotation .
?pfsb95 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?pfse96 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?ligand97 rdfs:subClassOf chebi:58349 .
?pfs100 up:annotation ?annotation101 .
?annotation101 faldo:begin ?pfsb102 ;
faldo:end ?pfse103 ;
up:ligand ?ligand104 ;
rdf:type up:Binding_Site_Annotation .
?pfsb102 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?pfse103 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?ligand104 rdfs:subClassOf chebi:58349 .
?pfs107 up:annotation ?annotation108 .
?annotation108 faldo:begin ?pfsb109 ;
faldo:end ?pfse110 ;
up:ligand ?ligand111 ;
rdf:type up:Binding_Site_Annotation .
?pfsb109 faldo:position ?thisPositionOn112 ;
rdf:type faldo:ExactPosition .
?pfse110 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?ligand111 rdfs:subClassOf chebi:58349 .
?pfs114 up:annotation ?annotation115 .
?annotation115 faldo:begin ?pfsb116 ;
faldo:end ?pfse117 ;
up:ligand ?ligand118 ;
rdf:type up:Binding_Site_Annotation .
?pfsb116 faldo:position ?thisPositionOn119 ;
rdf:type faldo:ExactPosition .
?pfse117 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?ligand118 rdfs:subClassOf chebi:58349 .
?pfs121 up:annotation ?annotation122 .
?annotation122 faldo:begin ?pfsb123 ;
faldo:end ?pfse124 ;
up:ligand ?ligand125 ;
rdf:type up:Binding_Site_Annotation .
?pfsb123 faldo:position ?thisPositionOn126 ;
rdf:type faldo:ExactPosition .
?pfse124 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
?ligand125 rdfs:subClassOf chebi:58349 .
?pfs128 up:annotation ?annotation129 .
?annotation129 faldo:begin ?pfsb130 ;
faldo:end ?pfse131 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment "O-(pantetheine 4'-phosphoryl)serine" .
?pfsb130 faldo:position ?thisPositionOn132 ;
rdf:type faldo:ExactPosition .
?pfse131 faldo:position ?thisPositionOn133 ;
rdf:type faldo:ExactPosition .
_:778025 a rdf:Statement ;
up:attribution _:777989 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:778026 a rdf:Statement ;
up:attribution _:777990 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:778027 a rdf:Statement ;
up:attribution _:777991 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:778028 a rdf:Statement ;
up:attribution _:777992 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:778029 a rdf:Statement ;
up:attribution _:777993 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:778030 a rdf:Statement ;
up:attribution _:777994 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:778031 a rdf:Statement ;
up:attribution _:777995 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:778032 a rdf:Statement ;
up:attribution _:777996 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:778033 a rdf:Statement ;
up:attribution _:777997 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:778034 a rdf:Statement ;
up:attribution _:777998 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:778035 a rdf:Statement ;
up:attribution _:777999 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:778036 a rdf:Statement ;
up:attribution _:778000 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:778037 a rdf:Statement ;
up:attribution _:778001 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:596 .
_:778038 a rdf:Statement ;
up:attribution _:778002 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:778039 a rdf:Statement ;
up:attribution _:778003 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:778040 a rdf:Statement ;
up:attribution _:778004 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050661 .
_:778041 a rdf:Statement ;
up:attribution _:778005 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016620 .
_:778042 a rdf:Statement ;
up:attribution _:778006 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0031177 .
_:778043 a rdf:Statement ;
up:source unirule:MF_02247 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:778044 a rdf:Statement ;
up:attribution _:778007 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:778045 a rdf:Statement ;
up:source unirule:MF_02247 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:778046 a rdf:Statement ;
up:attribution _:778008 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:778047 a rdf:Statement ;
up:source unirule:MF_02247 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:778048 a rdf:Statement ;
up:attribution _:778009 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:778049 a rdf:Statement ;
up:source unirule:MF_02247 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:778050 a rdf:Statement ;
up:attribution _:778010 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:778051 a rdf:Statement ;
up:source unirule:MF_02247 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:778052 a rdf:Statement ;
up:attribution _:778011 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:778053 a rdf:Statement ;
up:source unirule:MF_02247 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:778054 a rdf:Statement ;
up:attribution _:778012 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:778055 a rdf:Statement ;
up:source unirule:MF_02247 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:778056 a rdf:Statement ;
up:attribution _:778013 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:778057 a rdf:Statement ;
up:source unirule:MF_02247 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:778058 a rdf:Statement ;
up:attribution _:778014 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:778059 a rdf:Statement ;
up:source unirule:MF_02247 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:778060 a rdf:Statement ;
up:attribution _:778015 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:778061 a rdf:Statement ;
up:source unirule:MF_02247 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:778062 a rdf:Statement ;
up:attribution _:778016 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:778063 a rdf:Statement ;
up:source unirule:MF_02247 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:778064 a rdf:Statement ;
up:attribution _:778017 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:778065 a rdf:Statement ;
up:source unirule:MF_02247 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:778066 a rdf:Statement ;
up:attribution _:778018 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:778067 a rdf:Statement ;
up:source unirule:MF_02247 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:778068 a rdf:Statement ;
up:attribution _:778019 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:778069 a rdf:Statement ;
up:source unirule:MF_02247 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:778070 a rdf:Statement ;
up:attribution _:778020 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:778071 a rdf:Statement ;
up:source unirule:MF_02247 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:778072 a rdf:Statement ;
up:attribution _:778021 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:778073 a rdf:Statement ;
up:source unirule:MF_02247 ;
rdf:subject ?pfs114 ;
rdf:predicate up:annotation ;
rdf:object ?annotation115 .
_:778074 a rdf:Statement ;
up:attribution _:778022 ;
rdf:subject ?pfs114 ;
rdf:predicate up:annotation ;
rdf:object ?annotation115 .
_:778075 a rdf:Statement ;
up:source unirule:MF_02247 ;
rdf:subject ?pfs121 ;
rdf:predicate up:annotation ;
rdf:object ?annotation122 .
_:778076 a rdf:Statement ;
up:attribution _:778023 ;
rdf:subject ?pfs121 ;
rdf:predicate up:annotation ;
rdf:object ?annotation122 .
_:778077 a rdf:Statement ;
up:source unirule:MF_02247 ;
rdf:subject ?pfs128 ;
rdf:predicate up:annotation ;
rdf:object ?annotation129 .
_:778078 a rdf:Statement ;
up:attribution _:778024 ;
rdf:subject ?pfs128 ;
rdf:predicate up:annotation ;
rdf:object ?annotation129 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02247
#Rule MF_02247 Created by:? on:2021-03-01 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02247 .
?thisOrganism rdfs:subClassOf+ taxon:201174 .
BIND(URI(CONCAT(STR(?this), '#MF_02247a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02247a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02247a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02247a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02247a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02247a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02247a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch138 faldo:location ?templateMotifSequenceMatchRegionE5XP76139 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE5XP76141 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE5XP76MF_02247134 .
?templateMotifSequenceMatchRegionE5XP76139 faldo:begin ?templateMotifSequenceMatchBeginE5XP76140 .
?templateMotifSequenceMatchBeginE5XP76140 faldo:position ?templateMotifSequenceMatchBeginPositionE5XP76135 ;
faldo:reference isoform:E5XP76-1 .
?templateMotifSequenceProfileAlignmentOperationE5XP76141 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
?targetMotifMatch142 faldo:location ?targetMotifMatchRegionMatch143 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02247145 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE5XP76MF_02247136 .
?targetMotifMatchRegionMatch143 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02247144 .
?targetMotifMatchRegionMatchBeginMF_02247144 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02247137 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02247145 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE5XP76MF_02247134, 1, (STRLEN(?templateMotifCigarE5XP76MF_02247134) - STRLEN(REPLACE(?templateMotifCigarE5XP76MF_02247134, CONCAT('^(?:-*[^-]){', STR(((429 - ?templateMotifSequenceMatchBeginPositionE5XP76135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247136, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247136) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247136, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247136) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) .
BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_02247137) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE5XP76MF_02247134, 1, (STRLEN(?templateMotifCigarE5XP76MF_02247134) - STRLEN(REPLACE(?templateMotifCigarE5XP76MF_02247134, CONCAT('^(?:-*[^-]){', STR(((430 - ?templateMotifSequenceMatchBeginPositionE5XP76135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247136, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247136) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247136, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247136) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), '')))), '[^-]', ''))) AS ?step2149) .
BIND(((?step2149 + ?targetMotifMatchRegionMatchBeginPositionMF_02247137) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t150) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER (REGEX('[DE]G', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02247a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch155 faldo:location ?templateMotifSequenceMatchRegionE5XP76156 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE5XP76158 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE5XP76MF_02247151 .
?templateMotifSequenceMatchRegionE5XP76156 faldo:begin ?templateMotifSequenceMatchBeginE5XP76157 .
?templateMotifSequenceMatchBeginE5XP76157 faldo:position ?templateMotifSequenceMatchBeginPositionE5XP76152 ;
faldo:reference isoform:E5XP76-1 .
?templateMotifSequenceProfileAlignmentOperationE5XP76158 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
?targetMotifMatch159 faldo:location ?targetMotifMatchRegionMatch160 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02247162 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE5XP76MF_02247153 .
?targetMotifMatchRegionMatch160 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02247161 .
?targetMotifMatchRegionMatchBeginMF_02247161 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02247154 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02247162 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE5XP76MF_02247151, 1, (STRLEN(?templateMotifCigarE5XP76MF_02247151) - STRLEN(REPLACE(?templateMotifCigarE5XP76MF_02247151, CONCAT('^(?:-*[^-]){', STR(((519 - ?templateMotifSequenceMatchBeginPositionE5XP76152) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247153, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247153) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247153, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247153) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), '')))), '[^-]', ''))) AS ?step2164) .
BIND(((?step2164 + ?targetMotifMatchRegionMatchBeginPositionMF_02247154) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE5XP76MF_02247151, 1, (STRLEN(?templateMotifCigarE5XP76MF_02247151) - STRLEN(REPLACE(?templateMotifCigarE5XP76MF_02247151, CONCAT('^(?:-*[^-]){', STR(((522 - ?templateMotifSequenceMatchBeginPositionE5XP76152) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247153, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247153) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247153, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247153) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1165), '}'), '')))), '[^-]', ''))) AS ?step2166) .
BIND(((?step2166 + ?targetMotifMatchRegionMatchBeginPositionMF_02247154) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t167) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER (REGEX('Y[VL]DR', SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02247a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch172 faldo:location ?templateMotifSequenceMatchRegionE5XP76173 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE5XP76175 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE5XP76MF_02247168 .
?templateMotifSequenceMatchRegionE5XP76173 faldo:begin ?templateMotifSequenceMatchBeginE5XP76174 .
?templateMotifSequenceMatchBeginE5XP76174 faldo:position ?templateMotifSequenceMatchBeginPositionE5XP76169 ;
faldo:reference isoform:E5XP76-1 .
?templateMotifSequenceProfileAlignmentOperationE5XP76175 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
?targetMotifMatch176 faldo:location ?targetMotifMatchRegionMatch177 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02247179 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE5XP76MF_02247170 .
?targetMotifMatchRegionMatch177 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02247178 .
?targetMotifMatchRegionMatchBeginMF_02247178 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02247171 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02247179 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE5XP76MF_02247168, 1, (STRLEN(?templateMotifCigarE5XP76MF_02247168) - STRLEN(REPLACE(?templateMotifCigarE5XP76MF_02247168, CONCAT('^(?:-*[^-]){', STR(((801 - ?templateMotifSequenceMatchBeginPositionE5XP76169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247170, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247170) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247170, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247170) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1180), '}'), '')))), '[^-]', ''))) AS ?step2181) .
BIND(((?step2181 + ?targetMotifMatchRegionMatchBeginPositionMF_02247171) - 1) AS ?thisPositionOn28) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE5XP76MF_02247168, 1, (STRLEN(?templateMotifCigarE5XP76MF_02247168) - STRLEN(REPLACE(?templateMotifCigarE5XP76MF_02247168, CONCAT('^(?:-*[^-]){', STR(((804 - ?templateMotifSequenceMatchBeginPositionE5XP76169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247170, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247170) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247170, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247170) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247170, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) .
BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_02247171) - 1) AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t184) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER (REGEX('[NT]G[FYW]L', SUBSTR(?thisSequenceValue, ?thisPositionOn28, (?thisPositionOn29 - ?thisPositionOn28)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02247a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch189 faldo:location ?templateMotifSequenceMatchRegionE5XP76190 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE5XP76192 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE5XP76MF_02247185 .
?templateMotifSequenceMatchRegionE5XP76190 faldo:begin ?templateMotifSequenceMatchBeginE5XP76191 .
?templateMotifSequenceMatchBeginE5XP76191 faldo:position ?templateMotifSequenceMatchBeginPositionE5XP76186 ;
faldo:reference isoform:E5XP76-1 .
?templateMotifSequenceProfileAlignmentOperationE5XP76192 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
?targetMotifMatch193 faldo:location ?targetMotifMatchRegionMatch194 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02247196 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE5XP76MF_02247187 .
?targetMotifMatchRegionMatch194 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02247195 .
?targetMotifMatchRegionMatchBeginMF_02247195 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02247188 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02247196 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE5XP76MF_02247185, 1, (STRLEN(?templateMotifCigarE5XP76MF_02247185) - STRLEN(REPLACE(?templateMotifCigarE5XP76MF_02247185, CONCAT('^(?:-*[^-]){', STR(((868 - ?templateMotifSequenceMatchBeginPositionE5XP76186) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247187, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247187) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247187, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247187) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), '')))), '[^-]', ''))) AS ?step2198) .
BIND(((?step2198 + ?targetMotifMatchRegionMatchBeginPositionMF_02247188) - 1) AS ?thisPositionOn35) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE5XP76MF_02247185, 1, (STRLEN(?templateMotifCigarE5XP76MF_02247185) - STRLEN(REPLACE(?templateMotifCigarE5XP76MF_02247185, CONCAT('^(?:-*[^-]){', STR(((869 - ?templateMotifSequenceMatchBeginPositionE5XP76186) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247187, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247187) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247187, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247187) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), '')))), '[^-]', ''))) AS ?step2200) .
BIND(((?step2200 + ?targetMotifMatchRegionMatchBeginPositionMF_02247188) - 1) AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t201) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER (REGEX('D[FK]', SUBSTR(?thisSequenceValue, ?thisPositionOn35, (?thisPositionOn36 - ?thisPositionOn35)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02247a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch206 faldo:location ?templateMotifSequenceMatchRegionE5XP76207 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE5XP76209 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE5XP76MF_02247202 .
?templateMotifSequenceMatchRegionE5XP76207 faldo:begin ?templateMotifSequenceMatchBeginE5XP76208 .
?templateMotifSequenceMatchBeginE5XP76208 faldo:position ?templateMotifSequenceMatchBeginPositionE5XP76203 ;
faldo:reference isoform:E5XP76-1 .
?templateMotifSequenceProfileAlignmentOperationE5XP76209 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
?targetMotifMatch210 faldo:location ?targetMotifMatchRegionMatch211 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02247213 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE5XP76MF_02247204 .
?targetMotifMatchRegionMatch211 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02247212 .
?targetMotifMatchRegionMatchBeginMF_02247212 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02247205 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02247213 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE5XP76MF_02247202, 1, (STRLEN(?templateMotifCigarE5XP76MF_02247202) - STRLEN(REPLACE(?templateMotifCigarE5XP76MF_02247202, CONCAT('^(?:-*[^-]){', STR(((894 - ?templateMotifSequenceMatchBeginPositionE5XP76203) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1214) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247204, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247204) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247204, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247204) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), '')))), '[^-]', ''))) AS ?step2215) .
BIND(((?step2215 + ?targetMotifMatchRegionMatchBeginPositionMF_02247205) - 1) AS ?thisPositionOn42) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE5XP76MF_02247202, 1, (STRLEN(?templateMotifCigarE5XP76MF_02247202) - STRLEN(REPLACE(?templateMotifCigarE5XP76MF_02247202, CONCAT('^(?:-*[^-]){', STR(((896 - ?templateMotifSequenceMatchBeginPositionE5XP76203) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1216) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247204, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247204) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247204, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247204) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1216), '}'), '')))), '[^-]', ''))) AS ?step2217) .
BIND(((?step2217 + ?targetMotifMatchRegionMatchBeginPositionMF_02247205) - 1) AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t218) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER (REGEX('[SP][GA]A', SUBSTR(?thisSequenceValue, ?thisPositionOn42, (?thisPositionOn43 - ?thisPositionOn42)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02247a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch223 faldo:location ?templateMotifSequenceMatchRegionE5XP76224 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE5XP76226 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE5XP76MF_02247219 .
?templateMotifSequenceMatchRegionE5XP76224 faldo:begin ?templateMotifSequenceMatchBeginE5XP76225 .
?templateMotifSequenceMatchBeginE5XP76225 faldo:position ?templateMotifSequenceMatchBeginPositionE5XP76220 ;
faldo:reference isoform:E5XP76-1 .
?templateMotifSequenceProfileAlignmentOperationE5XP76226 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
?targetMotifMatch227 faldo:location ?targetMotifMatchRegionMatch228 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02247230 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE5XP76MF_02247221 .
?targetMotifMatchRegionMatch228 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02247229 .
?targetMotifMatchRegionMatchBeginMF_02247229 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02247222 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02247230 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE5XP76MF_02247219, 1, (STRLEN(?templateMotifCigarE5XP76MF_02247219) - STRLEN(REPLACE(?templateMotifCigarE5XP76MF_02247219, CONCAT('^(?:-*[^-]){', STR(((315 - ?templateMotifSequenceMatchBeginPositionE5XP76220) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1231) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247221, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247221) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247221, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247221) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247221, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1231), '}'), '')))), '[^-]', ''))) AS ?step2232) .
BIND(((?step2232 + ?targetMotifMatchRegionMatchBeginPositionMF_02247222) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t233) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02247a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch238 faldo:location ?templateMotifSequenceMatchRegionE5XP76239 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE5XP76241 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE5XP76MF_02247234 .
?templateMotifSequenceMatchRegionE5XP76239 faldo:begin ?templateMotifSequenceMatchBeginE5XP76240 .
?templateMotifSequenceMatchBeginE5XP76240 faldo:position ?templateMotifSequenceMatchBeginPositionE5XP76235 ;
faldo:reference isoform:E5XP76-1 .
?templateMotifSequenceProfileAlignmentOperationE5XP76241 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
?targetMotifMatch242 faldo:location ?targetMotifMatchRegionMatch243 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02247245 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE5XP76MF_02247236 .
?targetMotifMatchRegionMatch243 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02247244 .
?targetMotifMatchRegionMatchBeginMF_02247244 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02247237 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02247245 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE5XP76MF_02247234, 1, (STRLEN(?templateMotifCigarE5XP76MF_02247234) - STRLEN(REPLACE(?templateMotifCigarE5XP76MF_02247234, CONCAT('^(?:-*[^-]){', STR(((408 - ?templateMotifSequenceMatchBeginPositionE5XP76235) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1246) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247236, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247236) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247236, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247236) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247236, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1246), '}'), '')))), '[^-]', ''))) AS ?step2247) .
BIND(((?step2247 + ?targetMotifMatchRegionMatchBeginPositionMF_02247237) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t248) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02247a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch253 faldo:location ?templateMotifSequenceMatchRegionE5XP76254 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE5XP76256 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE5XP76MF_02247249 .
?templateMotifSequenceMatchRegionE5XP76254 faldo:begin ?templateMotifSequenceMatchBeginE5XP76255 .
?templateMotifSequenceMatchBeginE5XP76255 faldo:position ?templateMotifSequenceMatchBeginPositionE5XP76250 ;
faldo:reference isoform:E5XP76-1 .
?templateMotifSequenceProfileAlignmentOperationE5XP76256 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
?targetMotifMatch257 faldo:location ?targetMotifMatchRegionMatch258 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02247260 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE5XP76MF_02247251 .
?targetMotifMatchRegionMatch258 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02247259 .
?targetMotifMatchRegionMatchBeginMF_02247259 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02247252 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02247260 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE5XP76MF_02247249, 1, (STRLEN(?templateMotifCigarE5XP76MF_02247249) - STRLEN(REPLACE(?templateMotifCigarE5XP76MF_02247249, CONCAT('^(?:-*[^-]){', STR(((434 - ?templateMotifSequenceMatchBeginPositionE5XP76250) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1261) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247251, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247251) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247251, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247251) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247251, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1261), '}'), '')))), '[^-]', ''))) AS ?step2262) .
BIND(((?step2262 + ?targetMotifMatchRegionMatchBeginPositionMF_02247252) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs1t263) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_02247a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch268 faldo:location ?templateMotifSequenceMatchRegionE5XP76269 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE5XP76271 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE5XP76MF_02247264 .
?templateMotifSequenceMatchRegionE5XP76269 faldo:begin ?templateMotifSequenceMatchBeginE5XP76270 .
?templateMotifSequenceMatchBeginE5XP76270 faldo:position ?templateMotifSequenceMatchBeginPositionE5XP76265 ;
faldo:reference isoform:E5XP76-1 .
?templateMotifSequenceProfileAlignmentOperationE5XP76271 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
?targetMotifMatch272 faldo:location ?targetMotifMatchRegionMatch273 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02247275 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE5XP76MF_02247266 .
?targetMotifMatchRegionMatch273 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02247274 .
?targetMotifMatchRegionMatchBeginMF_02247274 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02247267 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02247275 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE5XP76MF_02247264, 1, (STRLEN(?templateMotifCigarE5XP76MF_02247264) - STRLEN(REPLACE(?templateMotifCigarE5XP76MF_02247264, CONCAT('^(?:-*[^-]){', STR(((507 - ?templateMotifSequenceMatchBeginPositionE5XP76265) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1276) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247266, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247266) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247266, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247266) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247266, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1276), '}'), '')))), '[^-]', ''))) AS ?step2277) .
BIND(((?step2277 + ?targetMotifMatchRegionMatchBeginPositionMF_02247267) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs1t278) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02247a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch283 faldo:location ?templateMotifSequenceMatchRegionE5XP76284 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE5XP76286 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE5XP76MF_02247279 .
?templateMotifSequenceMatchRegionE5XP76284 faldo:begin ?templateMotifSequenceMatchBeginE5XP76285 .
?templateMotifSequenceMatchBeginE5XP76285 faldo:position ?templateMotifSequenceMatchBeginPositionE5XP76280 ;
faldo:reference isoform:E5XP76-1 .
?templateMotifSequenceProfileAlignmentOperationE5XP76286 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
?targetMotifMatch287 faldo:location ?targetMotifMatchRegionMatch288 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02247290 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE5XP76MF_02247281 .
?targetMotifMatchRegionMatch288 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02247289 .
?targetMotifMatchRegionMatchBeginMF_02247289 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02247282 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02247290 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE5XP76MF_02247279, 1, (STRLEN(?templateMotifCigarE5XP76MF_02247279) - STRLEN(REPLACE(?templateMotifCigarE5XP76MF_02247279, CONCAT('^(?:-*[^-]){', STR(((528 - ?templateMotifSequenceMatchBeginPositionE5XP76280) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1291) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247281, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247281) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1291), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247281, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247281) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247281, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1291), '}'), '')))), '[^-]', ''))) AS ?step2292) .
BIND(((?step2292 + ?targetMotifMatchRegionMatchBeginPositionMF_02247282) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs1t293) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02247a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch298 faldo:location ?templateMotifSequenceMatchRegionE5XP76299 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE5XP76301 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE5XP76MF_02247294 .
?templateMotifSequenceMatchRegionE5XP76299 faldo:begin ?templateMotifSequenceMatchBeginE5XP76300 .
?templateMotifSequenceMatchBeginE5XP76300 faldo:position ?templateMotifSequenceMatchBeginPositionE5XP76295 ;
faldo:reference isoform:E5XP76-1 .
?templateMotifSequenceProfileAlignmentOperationE5XP76301 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
?targetMotifMatch302 faldo:location ?targetMotifMatchRegionMatch303 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02247305 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE5XP76MF_02247296 .
?targetMotifMatchRegionMatch303 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02247304 .
?targetMotifMatchRegionMatchBeginMF_02247304 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02247297 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02247305 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE5XP76MF_02247294, 1, (STRLEN(?templateMotifCigarE5XP76MF_02247294) - STRLEN(REPLACE(?templateMotifCigarE5XP76MF_02247294, CONCAT('^(?:-*[^-]){', STR(((629 - ?templateMotifSequenceMatchBeginPositionE5XP76295) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1306) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247296, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247296) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247296, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1306), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247296, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247296) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247296, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1306), '}'), '')))), '[^-]', ''))) AS ?step2307) .
BIND(((?step2307 + ?targetMotifMatchRegionMatchBeginPositionMF_02247297) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs1t308) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse82) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02247a80')) AS ?annotation80) .
BIND(?this AS ?pfs79) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch313 faldo:location ?templateMotifSequenceMatchRegionE5XP76314 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE5XP76316 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE5XP76MF_02247309 .
?templateMotifSequenceMatchRegionE5XP76314 faldo:begin ?templateMotifSequenceMatchBeginE5XP76315 .
?templateMotifSequenceMatchBeginE5XP76315 faldo:position ?templateMotifSequenceMatchBeginPositionE5XP76310 ;
faldo:reference isoform:E5XP76-1 .
?templateMotifSequenceProfileAlignmentOperationE5XP76316 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
?targetMotifMatch317 faldo:location ?targetMotifMatchRegionMatch318 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02247320 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE5XP76MF_02247311 .
?targetMotifMatchRegionMatch318 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02247319 .
?targetMotifMatchRegionMatchBeginMF_02247319 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02247312 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02247320 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE5XP76MF_02247309, 1, (STRLEN(?templateMotifCigarE5XP76MF_02247309) - STRLEN(REPLACE(?templateMotifCigarE5XP76MF_02247309, CONCAT('^(?:-*[^-]){', STR(((828 - ?templateMotifSequenceMatchBeginPositionE5XP76310) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1321) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247311, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247311) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247311, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1321), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247311, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247311) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247311, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1321), '}'), '')))), '[^-]', ''))) AS ?step2322) .
BIND(((?step2322 + ?targetMotifMatchRegionMatchBeginPositionMF_02247312) - 1) AS ?thisPositionOn91) .
BIND(?thisPositionOn91 AS ?thisPositionOn92) .
BIND(?this AS ?pfs1t323) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse89) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02247a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch328 faldo:location ?templateMotifSequenceMatchRegionE5XP76329 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE5XP76331 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE5XP76MF_02247324 .
?templateMotifSequenceMatchRegionE5XP76329 faldo:begin ?templateMotifSequenceMatchBeginE5XP76330 .
?templateMotifSequenceMatchBeginE5XP76330 faldo:position ?templateMotifSequenceMatchBeginPositionE5XP76325 ;
faldo:reference isoform:E5XP76-1 .
?templateMotifSequenceProfileAlignmentOperationE5XP76331 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
?targetMotifMatch332 faldo:location ?targetMotifMatchRegionMatch333 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02247335 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE5XP76MF_02247326 .
?targetMotifMatchRegionMatch333 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02247334 .
?targetMotifMatchRegionMatchBeginMF_02247334 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02247327 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02247335 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE5XP76MF_02247324, 1, (STRLEN(?templateMotifCigarE5XP76MF_02247324) - STRLEN(REPLACE(?templateMotifCigarE5XP76MF_02247324, CONCAT('^(?:-*[^-]){', STR(((838 - ?templateMotifSequenceMatchBeginPositionE5XP76325) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1336) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247326, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247326) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247326, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1336), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247326, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247326) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247326, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1336), '}'), '')))), '[^-]', ''))) AS ?step2337) .
BIND(((?step2337 + ?targetMotifMatchRegionMatchBeginPositionMF_02247327) - 1) AS ?thisPositionOn98) .
BIND(?thisPositionOn98 AS ?thisPositionOn99) .
BIND(?this AS ?pfs1t338) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfsb95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfse96) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn98, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02247a94')) AS ?annotation94) .
BIND(?this AS ?pfs93) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch343 faldo:location ?templateMotifSequenceMatchRegionE5XP76344 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE5XP76346 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE5XP76MF_02247339 .
?templateMotifSequenceMatchRegionE5XP76344 faldo:begin ?templateMotifSequenceMatchBeginE5XP76345 .
?templateMotifSequenceMatchBeginE5XP76345 faldo:position ?templateMotifSequenceMatchBeginPositionE5XP76340 ;
faldo:reference isoform:E5XP76-1 .
?templateMotifSequenceProfileAlignmentOperationE5XP76346 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
?targetMotifMatch347 faldo:location ?targetMotifMatchRegionMatch348 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02247350 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE5XP76MF_02247341 .
?targetMotifMatchRegionMatch348 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02247349 .
?targetMotifMatchRegionMatchBeginMF_02247349 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02247342 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02247350 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE5XP76MF_02247339, 1, (STRLEN(?templateMotifCigarE5XP76MF_02247339) - STRLEN(REPLACE(?templateMotifCigarE5XP76MF_02247339, CONCAT('^(?:-*[^-]){', STR(((934 - ?templateMotifSequenceMatchBeginPositionE5XP76340) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1351) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247341, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247341) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1351), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247341, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247341) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247341, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1351), '}'), '')))), '[^-]', ''))) AS ?step2352) .
BIND(((?step2352 + ?targetMotifMatchRegionMatchBeginPositionMF_02247342) - 1) AS ?thisPositionOn105) .
BIND(?thisPositionOn105 AS ?thisPositionOn106) .
BIND(?this AS ?pfs1t353) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse103) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_02247a101')) AS ?annotation101) .
BIND(?this AS ?pfs100) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch358 faldo:location ?templateMotifSequenceMatchRegionE5XP76359 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE5XP76361 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE5XP76MF_02247354 .
?templateMotifSequenceMatchRegionE5XP76359 faldo:begin ?templateMotifSequenceMatchBeginE5XP76360 .
?templateMotifSequenceMatchBeginE5XP76360 faldo:position ?templateMotifSequenceMatchBeginPositionE5XP76355 ;
faldo:reference isoform:E5XP76-1 .
?templateMotifSequenceProfileAlignmentOperationE5XP76361 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
?targetMotifMatch362 faldo:location ?targetMotifMatchRegionMatch363 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02247365 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE5XP76MF_02247356 .
?targetMotifMatchRegionMatch363 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02247364 .
?targetMotifMatchRegionMatchBeginMF_02247364 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02247357 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02247365 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE5XP76MF_02247354, 1, (STRLEN(?templateMotifCigarE5XP76MF_02247354) - STRLEN(REPLACE(?templateMotifCigarE5XP76MF_02247354, CONCAT('^(?:-*[^-]){', STR(((970 - ?templateMotifSequenceMatchBeginPositionE5XP76355) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1366) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247356, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247356) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247356, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1366), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247356, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247356) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247356, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1366), '}'), '')))), '[^-]', ''))) AS ?step2367) .
BIND(((?step2367 + ?targetMotifMatchRegionMatchBeginPositionMF_02247357) - 1) AS ?thisPositionOn112) .
BIND(?thisPositionOn112 AS ?thisPositionOn113) .
BIND(?this AS ?pfs1t368) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfsb109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfse110) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn112, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_02247a108')) AS ?annotation108) .
BIND(?this AS ?pfs107) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch373 faldo:location ?templateMotifSequenceMatchRegionE5XP76374 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE5XP76376 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE5XP76MF_02247369 .
?templateMotifSequenceMatchRegionE5XP76374 faldo:begin ?templateMotifSequenceMatchBeginE5XP76375 .
?templateMotifSequenceMatchBeginE5XP76375 faldo:position ?templateMotifSequenceMatchBeginPositionE5XP76370 ;
faldo:reference isoform:E5XP76-1 .
?templateMotifSequenceProfileAlignmentOperationE5XP76376 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
?targetMotifMatch377 faldo:location ?targetMotifMatchRegionMatch378 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02247380 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE5XP76MF_02247371 .
?targetMotifMatchRegionMatch378 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02247379 .
?targetMotifMatchRegionMatchBeginMF_02247379 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02247372 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02247380 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE5XP76MF_02247369, 1, (STRLEN(?templateMotifCigarE5XP76MF_02247369) - STRLEN(REPLACE(?templateMotifCigarE5XP76MF_02247369, CONCAT('^(?:-*[^-]){', STR(((974 - ?templateMotifSequenceMatchBeginPositionE5XP76370) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1381) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247371, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247371) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247371, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1381), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247371, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247371) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247371, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1381), '}'), '')))), '[^-]', ''))) AS ?step2382) .
BIND(((?step2382 + ?targetMotifMatchRegionMatchBeginPositionMF_02247372) - 1) AS ?thisPositionOn119) .
BIND(?thisPositionOn119 AS ?thisPositionOn120) .
BIND(?this AS ?pfs1t383) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn119))) AS ?pfsb116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfse117) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn119, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02247a115')) AS ?annotation115) .
BIND(?this AS ?pfs114) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch388 faldo:location ?templateMotifSequenceMatchRegionE5XP76389 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE5XP76391 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE5XP76MF_02247384 .
?templateMotifSequenceMatchRegionE5XP76389 faldo:begin ?templateMotifSequenceMatchBeginE5XP76390 .
?templateMotifSequenceMatchBeginE5XP76390 faldo:position ?templateMotifSequenceMatchBeginPositionE5XP76385 ;
faldo:reference isoform:E5XP76-1 .
?templateMotifSequenceProfileAlignmentOperationE5XP76391 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
?targetMotifMatch392 faldo:location ?targetMotifMatchRegionMatch393 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02247395 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE5XP76MF_02247386 .
?targetMotifMatchRegionMatch393 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02247394 .
?targetMotifMatchRegionMatchBeginMF_02247394 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02247387 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02247395 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE5XP76MF_02247384, 1, (STRLEN(?templateMotifCigarE5XP76MF_02247384) - STRLEN(REPLACE(?templateMotifCigarE5XP76MF_02247384, CONCAT('^(?:-*[^-]){', STR(((997 - ?templateMotifSequenceMatchBeginPositionE5XP76385) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1396) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247386, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247386) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247386, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1396), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247386, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247386) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247386, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1396), '}'), '')))), '[^-]', ''))) AS ?step2397) .
BIND(((?step2397 + ?targetMotifMatchRegionMatchBeginPositionMF_02247387) - 1) AS ?thisPositionOn126) .
BIND(?thisPositionOn126 AS ?thisPositionOn127) .
BIND(?this AS ?pfs1t398) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn126))) AS ?pfsb123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfse124) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn126, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_02247a122')) AS ?annotation122) .
BIND(?this AS ?pfs121) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch403 faldo:location ?templateMotifSequenceMatchRegionE5XP76404 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationE5XP76406 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarE5XP76MF_02247399 .
?templateMotifSequenceMatchRegionE5XP76404 faldo:begin ?templateMotifSequenceMatchBeginE5XP76405 .
?templateMotifSequenceMatchBeginE5XP76405 faldo:position ?templateMotifSequenceMatchBeginPositionE5XP76400 ;
faldo:reference isoform:E5XP76-1 .
?templateMotifSequenceProfileAlignmentOperationE5XP76406 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
?targetMotifMatch407 faldo:location ?targetMotifMatchRegionMatch408 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02247410 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarE5XP76MF_02247401 .
?targetMotifMatchRegionMatch408 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02247409 .
?targetMotifMatchRegionMatchBeginMF_02247409 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02247402 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02247410 edam:has_input signature:MF_02247 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarE5XP76MF_02247399, 1, (STRLEN(?templateMotifCigarE5XP76MF_02247399) - STRLEN(REPLACE(?templateMotifCigarE5XP76MF_02247399, CONCAT('^(?:-*[^-]){', STR(((702 - ?templateMotifSequenceMatchBeginPositionE5XP76400) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1411) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247401, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247401) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247401, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1411), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarE5XP76MF_02247401, 1, (STRLEN(?targetMotifMatchCigarE5XP76MF_02247401) - STRLEN(REPLACE(?targetMotifMatchCigarE5XP76MF_02247401, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1411), '}'), '')))), '[^-]', ''))) AS ?step2412) .
BIND(((?step2412 + ?targetMotifMatchRegionMatchBeginPositionMF_02247402) - 1) AS ?thisPositionOn132) .
BIND(?thisPositionOn132 AS ?thisPositionOn133) .
BIND(?this AS ?pfs1t413) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn132))) AS ?pfsb130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn133))) AS ?pfse131) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn132, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_02247a129')) AS ?annotation129) .
BIND(?this AS ?pfs128) .
}
}
"xsd:string |
