| http://purl.uniprot.org/unirules/MF_03049#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:803007 up:source unirule:MF_03049 .
_:803008 up:source unirule:MF_03049 .
_:803009 up:source unirule:MF_03049 .
_:803010 up:source unirule:MF_03049 .
_:803011 up:source unirule:MF_03049 .
_:803012 up:source unirule:MF_03049 .
_:803013 up:source unirule:MF_03049 .
_:803014 up:source unirule:MF_03049 .
_:803015 up:source unirule:MF_03049 .
_:803016 up:source unirule:MF_03049 .
_:803017 up:source unirule:MF_03049 .
_:803018 up:source unirule:MF_03049 .
_:803019 up:source unirule:MF_03049 .
_:803020 up:source unirule:MF_03049 .
_:803021 up:source unirule:MF_03049 .
_:803022 up:source unirule:MF_03049 .
_:803023 up:source unirule:MF_03049 .
_:803024 up:ecName '2.7.7.80' ;
up:fullName 'Molybdopterin-synthase adenylyltransferase' ;
rdf:type up:Structured_Name .
_:803025 up:fullName 'Adenylyltransferase uba4' ;
rdf:type up:Structured_Name .
_:803026 up:fullName 'Sulfur carrier protein MOCS2A adenylyltransferase' ;
rdf:type up:Structured_Name .
_:803027 up:source unirule:MF_03049 .
_:803028 up:ecName '2.8.1.11' ;
up:fullName 'Molybdopterin-synthase sulfurtransferase' ;
rdf:type up:Structured_Name .
_:803029 up:fullName 'Sulfurtransferase uba4' ;
rdf:type up:Structured_Name .
_:803030 up:fullName 'Sulfur carrier protein MOCS2A sulfurtransferase' ;
rdf:type up:Structured_Name .
_:803031 up:source unirule:MF_03049 .
_:803032 up:ecName '2.7.7.80' ;
up:fullName 'Molybdopterin-synthase adenylyltransferase' ;
rdf:type up:Structured_Name .
_:803033 up:fullName 'Adenylyltransferase MOCS3' ;
rdf:type up:Structured_Name .
_:803034 up:fullName 'Sulfur carrier protein MOCS2A adenylyltransferase' ;
rdf:type up:Structured_Name .
_:803035 up:source unirule:MF_03049 .
_:803036 up:ecName '2.8.1.11' ;
up:fullName 'Molybdopterin-synthase sulfurtransferase' ;
rdf:type up:Structured_Name .
_:803037 up:fullName 'Sulfurtransferase MOCS3' ;
rdf:type up:Structured_Name .
_:803038 up:fullName 'Sulfur carrier protein MOCS2A sulfurtransferase' ;
rdf:type up:Structured_Name .
_:803039 up:source unirule:MF_03049 .
_:803040 up:ecName '2.7.7.-' ;
up:fullName 'Adenylyltransferase @GENE_NAME@' ;
rdf:type up:Structured_Name .
_:803041 up:source unirule:MF_03049 .
_:803042 up:ecName '2.8.1.-' ;
up:fullName 'Sulfurtransferase @GENE_NAME@' ;
rdf:type up:Structured_Name .
_:803043 up:source unirule:MF_03049 .
_:803044 up:ecName '2.7.7.-' ;
up:fullName 'Adenylyltransferase' ;
rdf:type up:Structured_Name .
_:803045 up:source unirule:MF_03049 .
_:803046 up:ecName '2.8.1.-' ;
up:fullName 'Sulfurtransferase' ;
rdf:type up:Structured_Name .
_:803047 up:source unirule:MF_03049 .
_:803048 up:source unirule:MF_03049 .
_:803049 up:source unirule:MF_03049 .
_:803050 up:source unirule:MF_03049 .
_:803051 up:source unirule:MF_03049 .
_:803052 up:source unirule:MF_03049 .
_:803053 up:source unirule:MF_03049 .
_:803054 up:source unirule:MF_03049 .
_:803055 up:source unirule:MF_03049 .
_:803056 up:source unirule:MF_03049 .
_:803057 up:source unirule:MF_03049 .
_:803058 up:source unirule:MF_03049 .
_:803059 up:source unirule:MF_03049 .
_:803060 up:source unirule:MF_03049 .
_:803061 up:source unirule:MF_03049 .
_:803062 up:source unirule:MF_03049 .
_:803063 up:source unirule:MF_03049 .
_:803064 up:source unirule:MF_03049 .
?this up:annotation ?annotation0 ,
?annotation1 ,
?annotation2 ,
?annotation4 ;
up:classifiedWith GO:0002098 ,
GO:0005737 ,
GO:0016779 ,
GO:0016783 ,
GO:0034227 ,
keyword:479 ,
keyword:511 ,
keyword:547 ,
keyword:67 ,
keyword:808 ,
keyword:819 ,
keyword:862 ,
keyword:963 ;
up:domain ?namedpart5 ,
?namedpart6 ,
?namedpart7 ,
?namedpart8 ,
?namedpart9 ,
?namedpart10 ,
?namedpart11 ,
?namedpart12 .
?annotation0 up:cofactor chebi:29105 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 zinc ion per subunit.' .
?annotation1 a up:Pathway_Annotation ;
rdfs:comment 'tRNA modification; 5-methoxycarbonylmethyl-2-thiouridine-tRNA biosynthesis.' .
?annotation2 a up:Subcellular_Location_Annotation .
?annotation2li3 up:cellularComponent .
?annotation4 a up:Similarity_Annotation ;
rdfs:comment 'In the N-terminal section; belongs to the HesA/MoeB/ThiF family. UBA4 subfamily.' .
?namedpart5 up:alternativeName _:803025 ,
_:803026 ;
up:recommendedName _:803024 .
?namedpart6 up:alternativeName _:803029 ,
_:803030 ;
up:recommendedName _:803028 .
?namedpart7 up:alternativeName _:803033 ,
_:803034 ;
up:recommendedName _:803032 .
?namedpart8 up:alternativeName _:803037 ,
_:803038 ;
up:recommendedName _:803036 .
?namedpart9 up:recommendedName _:803040 .
?namedpart10 up:recommendedName _:803042 .
?namedpart11 up:recommendedName _:803044 .
?namedpart12 up:recommendedName _:803046 .
?case14 up:classifiedWith keyword:1015 .
?case21 up:classifiedWith GO:0032447 ,
keyword:833 .
?case22 up:classifiedWith GO:0006777 ,
keyword:501 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:30616 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:30616 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Glycyl thioester intermediate; for adenylyltransferase activity' .
?pfsb40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Cysteine persulfide intermediate; for sulfurtransferase activity' .
?pfsb46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:29105 .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf chebi:29105 .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
up:ligand ?ligand68 ;
rdf:type up:Binding_Site_Annotation .
?pfsb66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?ligand68 rdfs:subClassOf chebi:29105 .
?pfs71 up:annotation ?annotation72 .
?annotation72 faldo:begin ?pfsb73 ;
faldo:end ?pfse74 ;
up:ligand ?ligand75 ;
rdf:type up:Binding_Site_Annotation .
?pfsb73 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?pfse74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?ligand75 rdfs:subClassOf chebi:29105 .
?pfs78 up:annotation ?annotation79 .
?annotation79 faldo:begin ?pfsb80 ;
faldo:end ?pfse81 ;
up:ligand ?ligand82 ;
rdf:type up:Binding_Site_Annotation .
?pfsb80 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?pfse81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?ligand82 rdfs:subClassOf chebi:30616 .
?pfs85 up:annotation ?annotation86 .
?annotation86 faldo:begin ?pfsb87 ;
faldo:end ?pfse88 ;
up:ligand ?ligand89 ;
rdf:type up:Binding_Site_Annotation .
?pfsb87 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?pfse88 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?ligand89 rdfs:subClassOf chebi:30616 .
?pfs92 up:annotation ?annotation93 .
?annotation93 faldo:begin ?pfsb94 ;
faldo:end ?pfse95 ;
up:ligand ?ligand96 ;
rdf:type up:Binding_Site_Annotation .
?pfsb94 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?pfse95 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?ligand96 rdfs:subClassOf chebi:30616 .
?pfs99 up:annotation ?annotation100 .
?annotation100 faldo:begin ?pfsb101 ;
faldo:end ?pfse102 ;
rdf:type up:Disulfide_Bond_Annotation ;
rdfs:comment 'Alternate' .
?pfsb101 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfse102 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
_:803065 a rdf:Statement ;
up:attribution _:803007 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:803066 a rdf:Statement ;
up:attribution _:803008 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:803067 a rdf:Statement ;
up:attribution _:803009 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:803068 a rdf:Statement ;
up:attribution _:803010 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:803069 a rdf:Statement ;
up:attribution _:803011 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:803070 a rdf:Statement ;
up:attribution _:803012 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:803071 a rdf:Statement ;
up:attribution _:803013 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:803072 a rdf:Statement ;
up:attribution _:803014 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:511 .
_:803073 a rdf:Statement ;
up:attribution _:803015 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:803074 a rdf:Statement ;
up:attribution _:803016 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:803075 a rdf:Statement ;
up:attribution _:803017 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:803076 a rdf:Statement ;
up:attribution _:803018 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:803077 a rdf:Statement ;
up:attribution _:803019 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016779 .
_:803078 a rdf:Statement ;
up:attribution _:803020 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016783 .
_:803079 a rdf:Statement ;
up:attribution _:803021 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0002098 .
_:803080 a rdf:Statement ;
up:attribution _:803022 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0034227 .
_:803081 a rdf:Statement ;
up:attribution _:803023 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:803082 a rdf:Statement ;
up:attribution _:803027 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart5 .
_:803083 a rdf:Statement ;
up:attribution _:803031 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart6 .
_:803084 a rdf:Statement ;
up:attribution _:803035 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart7 .
_:803085 a rdf:Statement ;
up:attribution _:803039 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart8 .
_:803086 a rdf:Statement ;
up:attribution _:803041 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart9 .
_:803087 a rdf:Statement ;
up:attribution _:803043 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart10 .
_:803088 a rdf:Statement ;
up:attribution _:803045 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart11 .
_:803089 a rdf:Statement ;
up:attribution _:803047 ;
rdf:subject ?this ;
rdf:predicate up:domain ;
rdf:object ?namedpart12 .
_:803090 a rdf:Statement ;
up:attribution _:803048 ;
rdf:subject ?case14 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:803091 a rdf:Statement ;
up:attribution _:803049 ;
rdf:subject ?case21 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:833 .
_:803092 a rdf:Statement ;
up:attribution _:803050 ;
rdf:subject ?case21 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0032447 .
_:803093 a rdf:Statement ;
up:attribution _:803051 ;
rdf:subject ?case22 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:501 .
_:803094 a rdf:Statement ;
up:attribution _:803052 ;
rdf:subject ?case22 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006777 .
_:803095 a rdf:Statement ;
up:source unirule:MF_03049 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:803096 a rdf:Statement ;
up:attribution _:803053 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:803097 a rdf:Statement ;
up:source unirule:MF_03049 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:803098 a rdf:Statement ;
up:attribution _:803054 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:803099 a rdf:Statement ;
up:source unirule:MF_03049 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:803100 a rdf:Statement ;
up:attribution _:803055 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:803101 a rdf:Statement ;
up:source unirule:MF_03049 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:803102 a rdf:Statement ;
up:attribution _:803056 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:803103 a rdf:Statement ;
up:source unirule:MF_03049 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:803104 a rdf:Statement ;
up:attribution _:803057 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:803105 a rdf:Statement ;
up:source unirule:MF_03049 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:803106 a rdf:Statement ;
up:attribution _:803058 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:803107 a rdf:Statement ;
up:source unirule:MF_03049 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:803108 a rdf:Statement ;
up:attribution _:803059 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:803109 a rdf:Statement ;
up:source unirule:MF_03049 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:803110 a rdf:Statement ;
up:attribution _:803060 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:803111 a rdf:Statement ;
up:source unirule:MF_03049 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:803112 a rdf:Statement ;
up:attribution _:803061 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:803113 a rdf:Statement ;
up:source unirule:MF_03049 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
_:803114 a rdf:Statement ;
up:attribution _:803062 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
_:803115 a rdf:Statement ;
up:source unirule:MF_03049 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:803116 a rdf:Statement ;
up:attribution _:803063 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:803117 a rdf:Statement ;
up:source unirule:MF_03049 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
_:803118 a rdf:Statement ;
up:attribution _:803064 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03049
#Rule MF_03049 Created by:? on:2013-08-19 Modified by:Catherine Rivoire on:2024-10-29
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03049 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03049a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03049a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_03049a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03049a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_03049a5')) AS ?namedpart5) .
BIND(URI(CONCAT(STR(?this), '#MF_03049a6')) AS ?namedpart6) .
BIND(URI(CONCAT(STR(?this), '#MF_03049a7')) AS ?namedpart7) .
BIND(URI(CONCAT(STR(?this), '#MF_03049a8')) AS ?namedpart8) .
BIND(URI(CONCAT(STR(?this), '#MF_03049a9')) AS ?namedpart9) .
BIND(URI(CONCAT(STR(?this), '#MF_03049a10')) AS ?namedpart10) .
BIND(URI(CONCAT(STR(?this), '#MF_03049a11')) AS ?namedpart11) .
BIND(URI(CONCAT(STR(?this), '#MF_03049a12')) AS ?namedpart12) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionO95396110 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO95396112 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO95396MF_03049105 .
?templateMotifSequenceMatchRegionO95396110 faldo:begin ?templateMotifSequenceMatchBeginO95396111 .
?templateMotifSequenceMatchBeginO95396111 faldo:position ?templateMotifSequenceMatchBeginPositionO95396106 ;
faldo:reference isoform:O95396-1 .
?templateMotifSequenceProfileAlignmentOperationO95396112 edam:has_input signature:MF_03049 ;
rdf:type edam:operation_0300 .
?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03049116 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO95396MF_03049107 .
?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03049115 .
?targetMotifMatchRegionMatchBeginMF_03049115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03049108 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03049116 edam:has_input signature:MF_03049 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO95396MF_03049105, 1, (STRLEN(?templateMotifCigarO95396MF_03049105) - STRLEN(REPLACE(?templateMotifCigarO95396MF_03049105, CONCAT('^(?:-*[^-]){', STR(((120 - ?templateMotifSequenceMatchBeginPositionO95396106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO95396MF_03049107, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049107) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO95396MF_03049107, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049107) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_03049108) - 1) AS ?thisPositionOn29) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO95396MF_03049105, 1, (STRLEN(?templateMotifCigarO95396MF_03049105) - STRLEN(REPLACE(?templateMotifCigarO95396MF_03049105, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionO95396106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1119) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO95396MF_03049107, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049107) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO95396MF_03049107, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049107) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1119), '}'), '')))), '[^-]', ''))) AS ?step2120) .
BIND(((?step2120 + ?targetMotifMatchRegionMatchBeginPositionMF_03049108) - 1) AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX]N[LMF][HAQ]R', SUBSTR(?thisSequenceValue, ?thisPositionOn29, (?thisPositionOn30 - ?thisPositionOn29)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03049a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch126 faldo:location ?templateMotifSequenceMatchRegionO95396127 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO95396129 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO95396MF_03049122 .
?templateMotifSequenceMatchRegionO95396127 faldo:begin ?templateMotifSequenceMatchBeginO95396128 .
?templateMotifSequenceMatchBeginO95396128 faldo:position ?templateMotifSequenceMatchBeginPositionO95396123 ;
faldo:reference isoform:O95396-1 .
?templateMotifSequenceProfileAlignmentOperationO95396129 edam:has_input signature:MF_03049 ;
rdf:type edam:operation_0300 .
?targetMotifMatch130 faldo:location ?targetMotifMatchRegionMatch131 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03049133 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO95396MF_03049124 .
?targetMotifMatchRegionMatch131 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03049132 .
?targetMotifMatchRegionMatchBeginMF_03049132 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03049125 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03049133 edam:has_input signature:MF_03049 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO95396MF_03049122, 1, (STRLEN(?templateMotifCigarO95396MF_03049122) - STRLEN(REPLACE(?templateMotifCigarO95396MF_03049122, CONCAT('^(?:-*[^-]){', STR(((181 - ?templateMotifSequenceMatchBeginPositionO95396123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1134) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO95396MF_03049124, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049124) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO95396MF_03049124, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049124) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1134), '}'), '')))), '[^-]', ''))) AS ?step2135) .
BIND(((?step2135 + ?targetMotifMatchRegionMatchBeginPositionMF_03049125) - 1) AS ?thisPositionOn36) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO95396MF_03049122, 1, (STRLEN(?templateMotifCigarO95396MF_03049122) - STRLEN(REPLACE(?templateMotifCigarO95396MF_03049122, CONCAT('^(?:-*[^-]){', STR(((182 - ?templateMotifSequenceMatchBeginPositionO95396123) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO95396MF_03049124, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049124) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO95396MF_03049124, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049124) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049124, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) .
BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_03049125) - 1) AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t138) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER (REGEX('[DN][ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn36, (?thisPositionOn37 - ?thisPositionOn36)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03049a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch143 faldo:location ?templateMotifSequenceMatchRegionO95396144 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO95396146 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO95396MF_03049139 .
?templateMotifSequenceMatchRegionO95396144 faldo:begin ?templateMotifSequenceMatchBeginO95396145 .
?templateMotifSequenceMatchBeginO95396145 faldo:position ?templateMotifSequenceMatchBeginPositionO95396140 ;
faldo:reference isoform:O95396-1 .
?templateMotifSequenceProfileAlignmentOperationO95396146 edam:has_input signature:MF_03049 ;
rdf:type edam:operation_0300 .
?targetMotifMatch147 faldo:location ?targetMotifMatchRegionMatch148 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03049150 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO95396MF_03049141 .
?targetMotifMatchRegionMatch148 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03049149 .
?targetMotifMatchRegionMatchBeginMF_03049149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03049142 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03049150 edam:has_input signature:MF_03049 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO95396MF_03049139, 1, (STRLEN(?templateMotifCigarO95396MF_03049139) - STRLEN(REPLACE(?templateMotifCigarO95396MF_03049139, CONCAT('^(?:-*[^-]){', STR(((239 - ?templateMotifSequenceMatchBeginPositionO95396140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO95396MF_03049141, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049141) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO95396MF_03049141, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049141) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) .
BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_03049142) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t153) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03049a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionO95396159 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO95396161 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO95396MF_03049154 .
?templateMotifSequenceMatchRegionO95396159 faldo:begin ?templateMotifSequenceMatchBeginO95396160 .
?templateMotifSequenceMatchBeginO95396160 faldo:position ?templateMotifSequenceMatchBeginPositionO95396155 ;
faldo:reference isoform:O95396-1 .
?templateMotifSequenceProfileAlignmentOperationO95396161 edam:has_input signature:MF_03049 ;
rdf:type edam:operation_0300 .
?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03049165 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO95396MF_03049156 .
?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03049164 .
?targetMotifMatchRegionMatchBeginMF_03049164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03049157 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03049165 edam:has_input signature:MF_03049 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO95396MF_03049154, 1, (STRLEN(?templateMotifCigarO95396MF_03049154) - STRLEN(REPLACE(?templateMotifCigarO95396MF_03049154, CONCAT('^(?:-*[^-]){', STR(((412 - ?templateMotifSequenceMatchBeginPositionO95396155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO95396MF_03049156, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049156) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO95396MF_03049156, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049156) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) .
BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_03049157) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t168) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03049a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch173 faldo:location ?templateMotifSequenceMatchRegionO95396174 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO95396176 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO95396MF_03049169 .
?templateMotifSequenceMatchRegionO95396174 faldo:begin ?templateMotifSequenceMatchBeginO95396175 .
?templateMotifSequenceMatchBeginO95396175 faldo:position ?templateMotifSequenceMatchBeginPositionO95396170 ;
faldo:reference isoform:O95396-1 .
?templateMotifSequenceProfileAlignmentOperationO95396176 edam:has_input signature:MF_03049 ;
rdf:type edam:operation_0300 .
?targetMotifMatch177 faldo:location ?targetMotifMatchRegionMatch178 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03049180 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO95396MF_03049171 .
?targetMotifMatchRegionMatch178 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03049179 .
?targetMotifMatchRegionMatchBeginMF_03049179 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03049172 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03049180 edam:has_input signature:MF_03049 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO95396MF_03049169, 1, (STRLEN(?templateMotifCigarO95396MF_03049169) - STRLEN(REPLACE(?templateMotifCigarO95396MF_03049169, CONCAT('^(?:-*[^-]){', STR(((222 - ?templateMotifSequenceMatchBeginPositionO95396170) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO95396MF_03049171, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049171) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO95396MF_03049171, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049171) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049171, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) .
BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_03049172) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t183) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03049a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch188 faldo:location ?templateMotifSequenceMatchRegionO95396189 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO95396191 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO95396MF_03049184 .
?templateMotifSequenceMatchRegionO95396189 faldo:begin ?templateMotifSequenceMatchBeginO95396190 .
?templateMotifSequenceMatchBeginO95396190 faldo:position ?templateMotifSequenceMatchBeginPositionO95396185 ;
faldo:reference isoform:O95396-1 .
?templateMotifSequenceProfileAlignmentOperationO95396191 edam:has_input signature:MF_03049 ;
rdf:type edam:operation_0300 .
?targetMotifMatch192 faldo:location ?targetMotifMatchRegionMatch193 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03049195 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO95396MF_03049186 .
?targetMotifMatchRegionMatch193 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03049194 .
?targetMotifMatchRegionMatchBeginMF_03049194 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03049187 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03049195 edam:has_input signature:MF_03049 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO95396MF_03049184, 1, (STRLEN(?templateMotifCigarO95396MF_03049184) - STRLEN(REPLACE(?templateMotifCigarO95396MF_03049184, CONCAT('^(?:-*[^-]){', STR(((225 - ?templateMotifSequenceMatchBeginPositionO95396185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO95396MF_03049186, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049186) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO95396MF_03049186, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049186) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), '')))), '[^-]', ''))) AS ?step2197) .
BIND(((?step2197 + ?targetMotifMatchRegionMatchBeginPositionMF_03049187) - 1) AS ?thisPositionOn62) .
BIND(?thisPositionOn62 AS ?thisPositionOn63) .
BIND(?this AS ?pfs1t198) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03049a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch203 faldo:location ?templateMotifSequenceMatchRegionO95396204 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO95396206 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO95396MF_03049199 .
?templateMotifSequenceMatchRegionO95396204 faldo:begin ?templateMotifSequenceMatchBeginO95396205 .
?templateMotifSequenceMatchBeginO95396205 faldo:position ?templateMotifSequenceMatchBeginPositionO95396200 ;
faldo:reference isoform:O95396-1 .
?templateMotifSequenceProfileAlignmentOperationO95396206 edam:has_input signature:MF_03049 ;
rdf:type edam:operation_0300 .
?targetMotifMatch207 faldo:location ?targetMotifMatchRegionMatch208 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03049210 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO95396MF_03049201 .
?targetMotifMatchRegionMatch208 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03049209 .
?targetMotifMatchRegionMatchBeginMF_03049209 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03049202 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03049210 edam:has_input signature:MF_03049 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO95396MF_03049199, 1, (STRLEN(?templateMotifCigarO95396MF_03049199) - STRLEN(REPLACE(?templateMotifCigarO95396MF_03049199, CONCAT('^(?:-*[^-]){', STR(((297 - ?templateMotifSequenceMatchBeginPositionO95396200) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1211) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO95396MF_03049201, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049201) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO95396MF_03049201, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049201) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), '')))), '[^-]', ''))) AS ?step2212) .
BIND(((?step2212 + ?targetMotifMatchRegionMatchBeginPositionMF_03049202) - 1) AS ?thisPositionOn69) .
BIND(?thisPositionOn69 AS ?thisPositionOn70) .
BIND(?this AS ?pfs1t213) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn69, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03049a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch218 faldo:location ?templateMotifSequenceMatchRegionO95396219 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO95396221 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO95396MF_03049214 .
?templateMotifSequenceMatchRegionO95396219 faldo:begin ?templateMotifSequenceMatchBeginO95396220 .
?templateMotifSequenceMatchBeginO95396220 faldo:position ?templateMotifSequenceMatchBeginPositionO95396215 ;
faldo:reference isoform:O95396-1 .
?templateMotifSequenceProfileAlignmentOperationO95396221 edam:has_input signature:MF_03049 ;
rdf:type edam:operation_0300 .
?targetMotifMatch222 faldo:location ?targetMotifMatchRegionMatch223 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03049225 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO95396MF_03049216 .
?targetMotifMatchRegionMatch223 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03049224 .
?targetMotifMatchRegionMatchBeginMF_03049224 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03049217 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03049225 edam:has_input signature:MF_03049 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO95396MF_03049214, 1, (STRLEN(?templateMotifCigarO95396MF_03049214) - STRLEN(REPLACE(?templateMotifCigarO95396MF_03049214, CONCAT('^(?:-*[^-]){', STR(((300 - ?templateMotifSequenceMatchBeginPositionO95396215) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1226) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO95396MF_03049216, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049216) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO95396MF_03049216, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049216) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), '')))), '[^-]', ''))) AS ?step2227) .
BIND(((?step2227 + ?targetMotifMatchRegionMatchBeginPositionMF_03049217) - 1) AS ?thisPositionOn76) .
BIND(?thisPositionOn76 AS ?thisPositionOn77) .
BIND(?this AS ?pfs1t228) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse74) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03049a72')) AS ?annotation72) .
BIND(?this AS ?pfs71) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch233 faldo:location ?templateMotifSequenceMatchRegionO95396234 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO95396236 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO95396MF_03049229 .
?templateMotifSequenceMatchRegionO95396234 faldo:begin ?templateMotifSequenceMatchBeginO95396235 .
?templateMotifSequenceMatchBeginO95396235 faldo:position ?templateMotifSequenceMatchBeginPositionO95396230 ;
faldo:reference isoform:O95396-1 .
?templateMotifSequenceProfileAlignmentOperationO95396236 edam:has_input signature:MF_03049 ;
rdf:type edam:operation_0300 .
?targetMotifMatch237 faldo:location ?targetMotifMatchRegionMatch238 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03049240 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO95396MF_03049231 .
?targetMotifMatchRegionMatch238 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03049239 .
?targetMotifMatchRegionMatchBeginMF_03049239 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03049232 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03049240 edam:has_input signature:MF_03049 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO95396MF_03049229, 1, (STRLEN(?templateMotifCigarO95396MF_03049229) - STRLEN(REPLACE(?templateMotifCigarO95396MF_03049229, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionO95396230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1241) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO95396MF_03049231, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049231) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO95396MF_03049231, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049231) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), '')))), '[^-]', ''))) AS ?step2242) .
BIND(((?step2242 + ?targetMotifMatchRegionMatchBeginPositionMF_03049232) - 1) AS ?thisPositionOn83) .
BIND(?thisPositionOn83 AS ?thisPositionOn84) .
BIND(?this AS ?pfs1t243) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse81) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn83, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_03049a79')) AS ?annotation79) .
BIND(?this AS ?pfs78) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch248 faldo:location ?templateMotifSequenceMatchRegionO95396249 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO95396251 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO95396MF_03049244 .
?templateMotifSequenceMatchRegionO95396249 faldo:begin ?templateMotifSequenceMatchBeginO95396250 .
?templateMotifSequenceMatchBeginO95396250 faldo:position ?templateMotifSequenceMatchBeginPositionO95396245 ;
faldo:reference isoform:O95396-1 .
?templateMotifSequenceProfileAlignmentOperationO95396251 edam:has_input signature:MF_03049 ;
rdf:type edam:operation_0300 .
?targetMotifMatch252 faldo:location ?targetMotifMatchRegionMatch253 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03049255 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO95396MF_03049246 .
?targetMotifMatchRegionMatch253 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03049254 .
?targetMotifMatchRegionMatchBeginMF_03049254 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03049247 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03049255 edam:has_input signature:MF_03049 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO95396MF_03049244, 1, (STRLEN(?templateMotifCigarO95396MF_03049244) - STRLEN(REPLACE(?templateMotifCigarO95396MF_03049244, CONCAT('^(?:-*[^-]){', STR(((113 - ?templateMotifSequenceMatchBeginPositionO95396245) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1256) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO95396MF_03049246, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049246) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO95396MF_03049246, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049246) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), '')))), '[^-]', ''))) AS ?step2257) .
BIND(((?step2257 + ?targetMotifMatchRegionMatchBeginPositionMF_03049247) - 1) AS ?thisPositionOn90) .
BIND(?thisPositionOn90 AS ?thisPositionOn91) .
BIND(?this AS ?pfs1t258) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfsb87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfse88) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn90, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03049a86')) AS ?annotation86) .
BIND(?this AS ?pfs85) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch263 faldo:location ?templateMotifSequenceMatchRegionO95396264 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO95396266 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO95396MF_03049259 .
?templateMotifSequenceMatchRegionO95396264 faldo:begin ?templateMotifSequenceMatchBeginO95396265 .
?templateMotifSequenceMatchBeginO95396265 faldo:position ?templateMotifSequenceMatchBeginPositionO95396260 ;
faldo:reference isoform:O95396-1 .
?templateMotifSequenceProfileAlignmentOperationO95396266 edam:has_input signature:MF_03049 ;
rdf:type edam:operation_0300 .
?targetMotifMatch267 faldo:location ?targetMotifMatchRegionMatch268 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03049270 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO95396MF_03049261 .
?targetMotifMatchRegionMatch268 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03049269 .
?targetMotifMatchRegionMatchBeginMF_03049269 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03049262 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03049270 edam:has_input signature:MF_03049 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO95396MF_03049259, 1, (STRLEN(?templateMotifCigarO95396MF_03049259) - STRLEN(REPLACE(?templateMotifCigarO95396MF_03049259, CONCAT('^(?:-*[^-]){', STR(((137 - ?templateMotifSequenceMatchBeginPositionO95396260) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1271) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO95396MF_03049261, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049261) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO95396MF_03049261, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049261) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), '')))), '[^-]', ''))) AS ?step2272) .
BIND(((?step2272 + ?targetMotifMatchRegionMatchBeginPositionMF_03049262) - 1) AS ?thisPositionOn97) .
BIND(?thisPositionOn97 AS ?thisPositionOn98) .
BIND(?this AS ?pfs1t273) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfsb94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfse95) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn97, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03049a93')) AS ?annotation93) .
BIND(?this AS ?pfs92) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch278 faldo:location ?templateMotifSequenceMatchRegionO95396279 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO95396281 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO95396MF_03049274 .
?templateMotifSequenceMatchRegionO95396279 faldo:begin ?templateMotifSequenceMatchBeginO95396280 .
?templateMotifSequenceMatchBeginO95396280 faldo:position ?templateMotifSequenceMatchBeginPositionO95396275 ;
faldo:reference isoform:O95396-1 .
?templateMotifSequenceProfileAlignmentOperationO95396281 edam:has_input signature:MF_03049 ;
rdf:type edam:operation_0300 .
?targetMotifMatch282 faldo:location ?targetMotifMatchRegionMatch283 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03049285 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO95396MF_03049276 .
?targetMotifMatchRegionMatch283 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03049284 .
?targetMotifMatchRegionMatchBeginMF_03049284 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03049277 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03049285 edam:has_input signature:MF_03049 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO95396MF_03049274, 1, (STRLEN(?templateMotifCigarO95396MF_03049274) - STRLEN(REPLACE(?templateMotifCigarO95396MF_03049274, CONCAT('^(?:-*[^-]){', STR(((316 - ?templateMotifSequenceMatchBeginPositionO95396275) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1286) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO95396MF_03049276, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049276) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1286), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO95396MF_03049276, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049276) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1286), '}'), '')))), '[^-]', ''))) AS ?step2287) .
BIND(((?step2287 + ?targetMotifMatchRegionMatchBeginPositionMF_03049277) - 1) AS ?thisPositionOn103) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO95396MF_03049274, 1, (STRLEN(?templateMotifCigarO95396MF_03049274) - STRLEN(REPLACE(?templateMotifCigarO95396MF_03049274, CONCAT('^(?:-*[^-]){', STR(((324 - ?templateMotifSequenceMatchBeginPositionO95396275) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1288) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO95396MF_03049276, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049276) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1288), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO95396MF_03049276, 1, (STRLEN(?targetMotifMatchCigarO95396MF_03049276) - STRLEN(REPLACE(?targetMotifMatchCigarO95396MF_03049276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1288), '}'), '')))), '[^-]', ''))) AS ?step2289) .
BIND(((?step2289 + ?targetMotifMatchRegionMatchBeginPositionMF_03049277) - 1) AS ?thisPositionOn104) .
BIND(?this AS ?pfs2t290) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse102) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn103, (?thisPositionOn104 - ?thisPositionOn103)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03049a100')) AS ?annotation100) .
BIND(?this AS ?pfs99) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?case13) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case14) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
BIND(?this AS ?case15) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7214 .
BIND(?this AS ?case16) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:6237 .
BIND(?this AS ?case17) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:147538 .
BIND(?this AS ?case18) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon291 {taxon:7742 taxon:33090}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon291 .
BIND(?this AS ?case19) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:147538 .
})) .
BIND(?this AS ?case20) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:147538 .
})) .
BIND(?this AS ?case21) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon292 {taxon:33208 taxon:33090 taxon:147538}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon292 .
BIND(?this AS ?case22) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon293 {taxon:4751 taxon:7742 taxon:33090}
?thisOrganism rdfs:subClassOf+ ?supertaxon293 .
})) .
BIND(?this AS ?case23) .
}
}
"xsd:string |
