| http://purl.uniprot.org/unirules/MF_03062#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:808551 up:source unirule:MF_03062 .
_:808552 up:source unirule:MF_03062 .
_:808553 up:source unirule:MF_03062 .
_:808554 up:source unirule:MF_03062 .
_:808555 up:source unirule:MF_03062 .
_:808556 up:source unirule:MF_03062 .
_:808557 up:source unirule:MF_03062 .
_:808558 up:source unirule:MF_03062 .
_:808559 up:source unirule:MF_03062 .
_:808560 up:source unirule:MF_03062 .
_:808561 up:source unirule:MF_03062 .
_:808562 up:source unirule:MF_03062 .
_:808563 up:source unirule:MF_03062 .
_:808564 up:source unirule:MF_03062 .
_:808565 up:source unirule:MF_03062 .
_:808566 up:source unirule:MF_03062 .
_:808567 up:source unirule:MF_03062 .
_:808568 up:source unirule:MF_03062 .
_:808569 up:source unirule:MF_03062 .
_:808570 up:source unirule:MF_03062 .
_:808571 up:source unirule:MF_03062 .
_:808572 up:source unirule:MF_03062 .
_:808573 up:source unirule:MF_03062 .
_:808574 up:source unirule:MF_03062 .
_:808575 up:source unirule:MF_03062 .
_:808576 up:source unirule:MF_03062 .
_:808577 up:source unirule:MF_03062 .
_:808578 up:source unirule:MF_03062 .
_:808579 up:source unirule:MF_03062 .
_:808580 up:source unirule:MF_03062 .
_:808581 up:source unirule:MF_03062 .
_:808582 up:source unirule:MF_03062 .
_:808583 up:source unirule:MF_03062 .
_:808584 up:source unirule:MF_03062 .
_:808585 up:source unirule:MF_03062 .
_:808586 up:source unirule:MF_03062 .
_:808587 up:source unirule:MF_03062 .
_:808588 up:source unirule:MF_03062 .
_:808589 up:source unirule:MF_03062 .
_:808590 up:source unirule:MF_03062 .
_:808591 up:source unirule:MF_03062 .
_:808592 up:source unirule:MF_03062 .
_:808593 up:source unirule:MF_03062 .
_:808594 up:source unirule:MF_03062 .
_:808595 up:source unirule:MF_03062 .
_:808596 up:source unirule:MF_03062 .
_:808597 up:source unirule:MF_03062 .
_:808598 up:source unirule:MF_03062 .
_:808599 up:source unirule:MF_03062 .
_:808600 up:source unirule:MF_03062 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation10 ,
?annotation11 ;
up:classifiedWith GO:0000278 ,
GO:0003713 ,
GO:0004197 ,
GO:0004843 ,
GO:0005634 ,
GO:0008270 ,
GO:0042393 ,
GO:0043130 ,
GO:0045893 ,
GO:0051289 ,
GO:0140014 ,
keyword:10 ,
keyword:131 ,
keyword:132 ,
keyword:156 ,
keyword:378 ,
keyword:479 ,
keyword:498 ,
keyword:539 ,
keyword:645 ,
keyword:788 ,
keyword:804 ,
keyword:805 ,
keyword:833 ,
keyword:862 ,
keyword:863 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.4.19.12' ;
up:fullName 'Ubiquitin carboxyl-terminal hydrolase 16' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Deubiquitinating enzyme 16' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Ubiquitin thioesterase 16' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'Ubiquitin-specific-processing protease 16' ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'USP16' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:enzymeClass .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation8 a up:Subcellular_Location_Annotation .
?annotation8li9 up:cellularComponent .
?annotation10 a up:Domain_Annotation ;
rdfs:comment 'The UBP-type zinc finger binds 3 zinc ions that form a pair of cross-braced ring fingers encapsulated within a third zinc finger in the primary structure. It recognizes the C-terminal tail of free ubiquitin.' .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the peptidase C19 family. USP16 subfamily.' .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:29105 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:29105 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf chebi:29105 .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:29105 .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:29105 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf chebi:29105 .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn74 ;
rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf chebi:29105 .
?pfs75 up:annotation ?annotation76 .
?annotation76 faldo:begin ?pfsb77 ;
faldo:end ?pfse78 ;
up:ligand ?ligand79 ;
rdf:type up:Binding_Site_Annotation .
?pfsb77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?ligand79 rdfs:subClassOf chebi:29105 .
?pfs82 up:annotation ?annotation83 .
?annotation83 faldo:begin ?pfsb84 ;
faldo:end ?pfse85 ;
up:ligand ?ligand86 ;
rdf:type up:Binding_Site_Annotation .
?pfsb84 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfse85 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?ligand86 rdfs:subClassOf chebi:29105 .
?pfs89 up:annotation ?annotation90 .
?annotation90 faldo:begin ?pfsb91 ;
faldo:end ?pfse92 ;
up:ligand ?ligand93 ;
rdf:type up:Binding_Site_Annotation .
?pfsb91 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?pfse92 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?ligand93 rdfs:subClassOf chebi:29105 .
?pfs96 up:annotation ?annotation97 .
?annotation97 faldo:begin ?pfsb98 ;
faldo:end ?pfse99 ;
up:ligand ?ligand100 ;
rdf:type up:Binding_Site_Annotation .
?pfsb98 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?pfse99 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?ligand100 rdfs:subClassOf chebi:29105 .
?pfs103 up:annotation ?annotation104 .
?annotation104 faldo:begin ?pfsb105 ;
faldo:end ?pfse106 ;
up:ligand ?ligand107 ;
rdf:type up:Binding_Site_Annotation .
?pfsb105 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?pfse106 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?ligand107 rdfs:subClassOf chebi:29105 .
_:808601 a rdf:Statement ;
up:attribution _:808551 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:808602 a rdf:Statement ;
up:attribution _:808552 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:808603 a rdf:Statement ;
up:attribution _:808553 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:808604 a rdf:Statement ;
up:attribution _:808554 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:808605 a rdf:Statement ;
up:attribution _:808555 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:808606 a rdf:Statement ;
up:attribution _:808556 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:808607 a rdf:Statement ;
up:attribution _:808557 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:808608 a rdf:Statement ;
up:attribution _:808558 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:808609 a rdf:Statement ;
up:attribution _:808559 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:808610 a rdf:Statement ;
up:attribution _:808560 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:808611 a rdf:Statement ;
up:attribution _:808561 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:10 .
_:808612 a rdf:Statement ;
up:attribution _:808562 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:131 .
_:808613 a rdf:Statement ;
up:attribution _:808563 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:132 .
_:808614 a rdf:Statement ;
up:attribution _:808564 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:156 .
_:808615 a rdf:Statement ;
up:attribution _:808565 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:808616 a rdf:Statement ;
up:attribution _:808566 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:808617 a rdf:Statement ;
up:attribution _:808567 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:498 .
_:808618 a rdf:Statement ;
up:attribution _:808568 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:539 .
_:808619 a rdf:Statement ;
up:attribution _:808569 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:645 .
_:808620 a rdf:Statement ;
up:attribution _:808570 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:788 .
_:808621 a rdf:Statement ;
up:attribution _:808571 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:804 .
_:808622 a rdf:Statement ;
up:attribution _:808572 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:805 .
_:808623 a rdf:Statement ;
up:attribution _:808573 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:833 .
_:808624 a rdf:Statement ;
up:attribution _:808574 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:808625 a rdf:Statement ;
up:attribution _:808575 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:863 .
_:808626 a rdf:Statement ;
up:attribution _:808576 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005634 .
_:808627 a rdf:Statement ;
up:attribution _:808577 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004197 .
_:808628 a rdf:Statement ;
up:attribution _:808578 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042393 .
_:808629 a rdf:Statement ;
up:attribution _:808579 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003713 .
_:808630 a rdf:Statement ;
up:attribution _:808580 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0043130 .
_:808631 a rdf:Statement ;
up:attribution _:808581 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004843 .
_:808632 a rdf:Statement ;
up:attribution _:808582 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:808633 a rdf:Statement ;
up:attribution _:808583 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000278 .
_:808634 a rdf:Statement ;
up:attribution _:808584 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0140014 .
_:808635 a rdf:Statement ;
up:attribution _:808585 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0045893 .
_:808636 a rdf:Statement ;
up:attribution _:808586 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051289 .
_:808637 a rdf:Statement ;
up:source unirule:MF_03062 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:808638 a rdf:Statement ;
up:attribution _:808587 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:808639 a rdf:Statement ;
up:source unirule:MF_03062 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:808640 a rdf:Statement ;
up:attribution _:808588 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:808641 a rdf:Statement ;
up:source unirule:MF_03062 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:808642 a rdf:Statement ;
up:attribution _:808589 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:808643 a rdf:Statement ;
up:source unirule:MF_03062 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:808644 a rdf:Statement ;
up:attribution _:808590 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:808645 a rdf:Statement ;
up:source unirule:MF_03062 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:808646 a rdf:Statement ;
up:attribution _:808591 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:808647 a rdf:Statement ;
up:source unirule:MF_03062 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:808648 a rdf:Statement ;
up:attribution _:808592 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:808649 a rdf:Statement ;
up:source unirule:MF_03062 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:808650 a rdf:Statement ;
up:attribution _:808593 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:808651 a rdf:Statement ;
up:source unirule:MF_03062 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:808652 a rdf:Statement ;
up:attribution _:808594 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:808653 a rdf:Statement ;
up:source unirule:MF_03062 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:808654 a rdf:Statement ;
up:attribution _:808595 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:808655 a rdf:Statement ;
up:source unirule:MF_03062 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:808656 a rdf:Statement ;
up:attribution _:808596 ;
rdf:subject ?pfs75 ;
rdf:predicate up:annotation ;
rdf:object ?annotation76 .
_:808657 a rdf:Statement ;
up:source unirule:MF_03062 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:808658 a rdf:Statement ;
up:attribution _:808597 ;
rdf:subject ?pfs82 ;
rdf:predicate up:annotation ;
rdf:object ?annotation83 .
_:808659 a rdf:Statement ;
up:source unirule:MF_03062 ;
rdf:subject ?pfs89 ;
rdf:predicate up:annotation ;
rdf:object ?annotation90 .
_:808660 a rdf:Statement ;
up:attribution _:808598 ;
rdf:subject ?pfs89 ;
rdf:predicate up:annotation ;
rdf:object ?annotation90 .
_:808661 a rdf:Statement ;
up:source unirule:MF_03062 ;
rdf:subject ?pfs96 ;
rdf:predicate up:annotation ;
rdf:object ?annotation97 .
_:808662 a rdf:Statement ;
up:attribution _:808599 ;
rdf:subject ?pfs96 ;
rdf:predicate up:annotation ;
rdf:object ?annotation97 .
_:808663 a rdf:Statement ;
up:source unirule:MF_03062 ;
rdf:subject ?pfs103 ;
rdf:predicate up:annotation ;
rdf:object ?annotation104 .
_:808664 a rdf:Statement ;
up:attribution _:808600 ;
rdf:subject ?pfs103 ;
rdf:predicate up:annotation ;
rdf:object ?annotation104 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03062
#Rule MF_03062 Created by:? on:2013-11-07 Modified by:Catherine Rivoire on:2024-03-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03062 .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(URI(CONCAT(STR(?this), '#MF_03062a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03062a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_03062a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_03062a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_03062a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_03062a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_03062a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_03062a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_03062a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch114 faldo:location ?templateMotifSequenceMatchRegionQ9Y5T5115 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y5T5117 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y5T5MF_03062110 .
?templateMotifSequenceMatchRegionQ9Y5T5115 faldo:begin ?templateMotifSequenceMatchBeginQ9Y5T5116 .
?templateMotifSequenceMatchBeginQ9Y5T5116 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y5T5111 ;
faldo:reference isoform:Q9Y5T5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y5T5117 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
?targetMotifMatch118 faldo:location ?targetMotifMatchRegionMatch119 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03062121 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y5T5MF_03062112 .
?targetMotifMatchRegionMatch119 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03062120 .
?targetMotifMatchRegionMatchBeginMF_03062120 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03062113 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03062121 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y5T5MF_03062110, 1, (STRLEN(?templateMotifCigarQ9Y5T5MF_03062110) - STRLEN(REPLACE(?templateMotifCigarQ9Y5T5MF_03062110, CONCAT('^(?:-*[^-]){', STR(((205 - ?templateMotifSequenceMatchBeginPositionQ9Y5T5111) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1122) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062112, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062112) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062112, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062112) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062112, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1122), '}'), '')))), '[^-]', ''))) AS ?step2123) .
BIND(((?step2123 + ?targetMotifMatchRegionMatchBeginPositionMF_03062113) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t124) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03062a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch129 faldo:location ?templateMotifSequenceMatchRegionQ9Y5T5130 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y5T5132 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y5T5MF_03062125 .
?templateMotifSequenceMatchRegionQ9Y5T5130 faldo:begin ?templateMotifSequenceMatchBeginQ9Y5T5131 .
?templateMotifSequenceMatchBeginQ9Y5T5131 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y5T5126 ;
faldo:reference isoform:Q9Y5T5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y5T5132 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
?targetMotifMatch133 faldo:location ?targetMotifMatchRegionMatch134 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03062136 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y5T5MF_03062127 .
?targetMotifMatchRegionMatch134 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03062135 .
?targetMotifMatchRegionMatchBeginMF_03062135 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03062128 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03062136 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y5T5MF_03062125, 1, (STRLEN(?templateMotifCigarQ9Y5T5MF_03062125) - STRLEN(REPLACE(?templateMotifCigarQ9Y5T5MF_03062125, CONCAT('^(?:-*[^-]){', STR(((758 - ?templateMotifSequenceMatchBeginPositionQ9Y5T5126) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1137) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062127, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062127) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062127, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062127) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062127, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1137), '}'), '')))), '[^-]', ''))) AS ?step2138) .
BIND(((?step2138 + ?targetMotifMatchRegionMatchBeginPositionMF_03062128) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t139) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03062a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch144 faldo:location ?templateMotifSequenceMatchRegionQ9Y5T5145 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y5T5147 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y5T5MF_03062140 .
?templateMotifSequenceMatchRegionQ9Y5T5145 faldo:begin ?templateMotifSequenceMatchBeginQ9Y5T5146 .
?templateMotifSequenceMatchBeginQ9Y5T5146 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y5T5141 ;
faldo:reference isoform:Q9Y5T5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y5T5147 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
?targetMotifMatch148 faldo:location ?targetMotifMatchRegionMatch149 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03062151 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y5T5MF_03062142 .
?targetMotifMatchRegionMatch149 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03062150 .
?targetMotifMatchRegionMatchBeginMF_03062150 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03062143 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03062151 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y5T5MF_03062140, 1, (STRLEN(?templateMotifCigarQ9Y5T5MF_03062140) - STRLEN(REPLACE(?templateMotifCigarQ9Y5T5MF_03062140, CONCAT('^(?:-*[^-]){', STR(((24 - ?templateMotifSequenceMatchBeginPositionQ9Y5T5141) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062142, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062142) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062142, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062142) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062142, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1152), '}'), '')))), '[^-]', ''))) AS ?step2153) .
BIND(((?step2153 + ?targetMotifMatchRegionMatchBeginPositionMF_03062143) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t154) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03062a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch159 faldo:location ?templateMotifSequenceMatchRegionQ9Y5T5160 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y5T5162 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y5T5MF_03062155 .
?templateMotifSequenceMatchRegionQ9Y5T5160 faldo:begin ?templateMotifSequenceMatchBeginQ9Y5T5161 .
?templateMotifSequenceMatchBeginQ9Y5T5161 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y5T5156 ;
faldo:reference isoform:Q9Y5T5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y5T5162 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
?targetMotifMatch163 faldo:location ?targetMotifMatchRegionMatch164 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03062166 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y5T5MF_03062157 .
?targetMotifMatchRegionMatch164 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03062165 .
?targetMotifMatchRegionMatchBeginMF_03062165 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03062158 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03062166 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y5T5MF_03062155, 1, (STRLEN(?templateMotifCigarQ9Y5T5MF_03062155) - STRLEN(REPLACE(?templateMotifCigarQ9Y5T5MF_03062155, CONCAT('^(?:-*[^-]){', STR(((26 - ?templateMotifSequenceMatchBeginPositionQ9Y5T5156) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062157, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062157) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062157, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062157) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062157, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1167), '}'), '')))), '[^-]', ''))) AS ?step2168) .
BIND(((?step2168 + ?targetMotifMatchRegionMatchBeginPositionMF_03062158) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t169) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03062a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch174 faldo:location ?templateMotifSequenceMatchRegionQ9Y5T5175 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y5T5177 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y5T5MF_03062170 .
?templateMotifSequenceMatchRegionQ9Y5T5175 faldo:begin ?templateMotifSequenceMatchBeginQ9Y5T5176 .
?templateMotifSequenceMatchBeginQ9Y5T5176 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y5T5171 ;
faldo:reference isoform:Q9Y5T5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y5T5177 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
?targetMotifMatch178 faldo:location ?targetMotifMatchRegionMatch179 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03062181 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y5T5MF_03062172 .
?targetMotifMatchRegionMatch179 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03062180 .
?targetMotifMatchRegionMatchBeginMF_03062180 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03062173 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03062181 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y5T5MF_03062170, 1, (STRLEN(?templateMotifCigarQ9Y5T5MF_03062170) - STRLEN(REPLACE(?templateMotifCigarQ9Y5T5MF_03062170, CONCAT('^(?:-*[^-]){', STR(((48 - ?templateMotifSequenceMatchBeginPositionQ9Y5T5171) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062172, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062172) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062172, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062172) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062172, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1182), '}'), '')))), '[^-]', ''))) AS ?step2183) .
BIND(((?step2183 + ?targetMotifMatchRegionMatchBeginPositionMF_03062173) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t184) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03062a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch189 faldo:location ?templateMotifSequenceMatchRegionQ9Y5T5190 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y5T5192 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y5T5MF_03062185 .
?templateMotifSequenceMatchRegionQ9Y5T5190 faldo:begin ?templateMotifSequenceMatchBeginQ9Y5T5191 .
?templateMotifSequenceMatchBeginQ9Y5T5191 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y5T5186 ;
faldo:reference isoform:Q9Y5T5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y5T5192 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
?targetMotifMatch193 faldo:location ?targetMotifMatchRegionMatch194 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03062196 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y5T5MF_03062187 .
?targetMotifMatchRegionMatch194 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03062195 .
?targetMotifMatchRegionMatchBeginMF_03062195 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03062188 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03062196 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y5T5MF_03062185, 1, (STRLEN(?templateMotifCigarQ9Y5T5MF_03062185) - STRLEN(REPLACE(?templateMotifCigarQ9Y5T5MF_03062185, CONCAT('^(?:-*[^-]){', STR(((51 - ?templateMotifSequenceMatchBeginPositionQ9Y5T5186) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062187, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062187) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062187, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062187) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062187, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1197), '}'), '')))), '[^-]', ''))) AS ?step2198) .
BIND(((?step2198 + ?targetMotifMatchRegionMatchBeginPositionMF_03062188) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t199) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03062a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch204 faldo:location ?templateMotifSequenceMatchRegionQ9Y5T5205 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y5T5207 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y5T5MF_03062200 .
?templateMotifSequenceMatchRegionQ9Y5T5205 faldo:begin ?templateMotifSequenceMatchBeginQ9Y5T5206 .
?templateMotifSequenceMatchBeginQ9Y5T5206 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y5T5201 ;
faldo:reference isoform:Q9Y5T5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y5T5207 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
?targetMotifMatch208 faldo:location ?targetMotifMatchRegionMatch209 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03062211 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y5T5MF_03062202 .
?targetMotifMatchRegionMatch209 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03062210 .
?targetMotifMatchRegionMatchBeginMF_03062210 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03062203 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03062211 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y5T5MF_03062200, 1, (STRLEN(?templateMotifCigarQ9Y5T5MF_03062200) - STRLEN(REPLACE(?templateMotifCigarQ9Y5T5MF_03062200, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionQ9Y5T5201) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1212) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062202, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062202) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062202, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062202) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062202, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1212), '}'), '')))), '[^-]', ''))) AS ?step2213) .
BIND(((?step2213 + ?targetMotifMatchRegionMatchBeginPositionMF_03062203) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t214) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03062a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch219 faldo:location ?templateMotifSequenceMatchRegionQ9Y5T5220 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y5T5222 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y5T5MF_03062215 .
?templateMotifSequenceMatchRegionQ9Y5T5220 faldo:begin ?templateMotifSequenceMatchBeginQ9Y5T5221 .
?templateMotifSequenceMatchBeginQ9Y5T5221 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y5T5216 ;
faldo:reference isoform:Q9Y5T5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y5T5222 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
?targetMotifMatch223 faldo:location ?targetMotifMatchRegionMatch224 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03062226 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y5T5MF_03062217 .
?targetMotifMatchRegionMatch224 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03062225 .
?targetMotifMatchRegionMatchBeginMF_03062225 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03062218 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03062226 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y5T5MF_03062215, 1, (STRLEN(?templateMotifCigarQ9Y5T5MF_03062215) - STRLEN(REPLACE(?templateMotifCigarQ9Y5T5MF_03062215, CONCAT('^(?:-*[^-]){', STR(((77 - ?templateMotifSequenceMatchBeginPositionQ9Y5T5216) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1227) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062217, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062217) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062217, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062217) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062217, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1227), '}'), '')))), '[^-]', ''))) AS ?step2228) .
BIND(((?step2228 + ?targetMotifMatchRegionMatchBeginPositionMF_03062218) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t229) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03062a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch234 faldo:location ?templateMotifSequenceMatchRegionQ9Y5T5235 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y5T5237 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y5T5MF_03062230 .
?templateMotifSequenceMatchRegionQ9Y5T5235 faldo:begin ?templateMotifSequenceMatchBeginQ9Y5T5236 .
?templateMotifSequenceMatchBeginQ9Y5T5236 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y5T5231 ;
faldo:reference isoform:Q9Y5T5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y5T5237 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
?targetMotifMatch238 faldo:location ?targetMotifMatchRegionMatch239 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03062241 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y5T5MF_03062232 .
?targetMotifMatchRegionMatch239 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03062240 .
?targetMotifMatchRegionMatchBeginMF_03062240 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03062233 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03062241 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y5T5MF_03062230, 1, (STRLEN(?templateMotifCigarQ9Y5T5MF_03062230) - STRLEN(REPLACE(?templateMotifCigarQ9Y5T5MF_03062230, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionQ9Y5T5231) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1242) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062232, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062232) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1242), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062232, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062232) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062232, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1242), '}'), '')))), '[^-]', ''))) AS ?step2243) .
BIND(((?step2243 + ?targetMotifMatchRegionMatchBeginPositionMF_03062233) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs1t244) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03062a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch249 faldo:location ?templateMotifSequenceMatchRegionQ9Y5T5250 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y5T5252 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y5T5MF_03062245 .
?templateMotifSequenceMatchRegionQ9Y5T5250 faldo:begin ?templateMotifSequenceMatchBeginQ9Y5T5251 .
?templateMotifSequenceMatchBeginQ9Y5T5251 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y5T5246 ;
faldo:reference isoform:Q9Y5T5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y5T5252 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
?targetMotifMatch253 faldo:location ?targetMotifMatchRegionMatch254 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03062256 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y5T5MF_03062247 .
?targetMotifMatchRegionMatch254 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03062255 .
?targetMotifMatchRegionMatchBeginMF_03062255 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03062248 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03062256 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y5T5MF_03062245, 1, (STRLEN(?templateMotifCigarQ9Y5T5MF_03062245) - STRLEN(REPLACE(?templateMotifCigarQ9Y5T5MF_03062245, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionQ9Y5T5246) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1257) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062247, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062247) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1257), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062247, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062247) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062247, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1257), '}'), '')))), '[^-]', ''))) AS ?step2258) .
BIND(((?step2258 + ?targetMotifMatchRegionMatchBeginPositionMF_03062248) - 1) AS ?thisPositionOn80) .
BIND(?thisPositionOn80 AS ?thisPositionOn81) .
BIND(?this AS ?pfs1t259) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse78) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03062a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch264 faldo:location ?templateMotifSequenceMatchRegionQ9Y5T5265 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y5T5267 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y5T5MF_03062260 .
?templateMotifSequenceMatchRegionQ9Y5T5265 faldo:begin ?templateMotifSequenceMatchBeginQ9Y5T5266 .
?templateMotifSequenceMatchBeginQ9Y5T5266 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y5T5261 ;
faldo:reference isoform:Q9Y5T5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y5T5267 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
?targetMotifMatch268 faldo:location ?targetMotifMatchRegionMatch269 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03062271 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y5T5MF_03062262 .
?targetMotifMatchRegionMatch269 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03062270 .
?targetMotifMatchRegionMatchBeginMF_03062270 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03062263 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03062271 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y5T5MF_03062260, 1, (STRLEN(?templateMotifCigarQ9Y5T5MF_03062260) - STRLEN(REPLACE(?templateMotifCigarQ9Y5T5MF_03062260, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionQ9Y5T5261) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1272) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062262, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062262) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062262, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1272), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062262, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062262) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062262, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1272), '}'), '')))), '[^-]', ''))) AS ?step2273) .
BIND(((?step2273 + ?targetMotifMatchRegionMatchBeginPositionMF_03062263) - 1) AS ?thisPositionOn87) .
BIND(?thisPositionOn87 AS ?thisPositionOn88) .
BIND(?this AS ?pfs1t274) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse85) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03062a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch279 faldo:location ?templateMotifSequenceMatchRegionQ9Y5T5280 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y5T5282 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y5T5MF_03062275 .
?templateMotifSequenceMatchRegionQ9Y5T5280 faldo:begin ?templateMotifSequenceMatchBeginQ9Y5T5281 .
?templateMotifSequenceMatchBeginQ9Y5T5281 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y5T5276 ;
faldo:reference isoform:Q9Y5T5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y5T5282 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
?targetMotifMatch283 faldo:location ?targetMotifMatchRegionMatch284 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03062286 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y5T5MF_03062277 .
?targetMotifMatchRegionMatch284 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03062285 .
?targetMotifMatchRegionMatchBeginMF_03062285 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03062278 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03062286 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y5T5MF_03062275, 1, (STRLEN(?templateMotifCigarQ9Y5T5MF_03062275) - STRLEN(REPLACE(?templateMotifCigarQ9Y5T5MF_03062275, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionQ9Y5T5276) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1287) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062277, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062277) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062277, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1287), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062277, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062277) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062277, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1287), '}'), '')))), '[^-]', ''))) AS ?step2288) .
BIND(((?step2288 + ?targetMotifMatchRegionMatchBeginPositionMF_03062278) - 1) AS ?thisPositionOn94) .
BIND(?thisPositionOn94 AS ?thisPositionOn95) .
BIND(?this AS ?pfs1t289) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse92) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn94, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03062a90')) AS ?annotation90) .
BIND(?this AS ?pfs89) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch294 faldo:location ?templateMotifSequenceMatchRegionQ9Y5T5295 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y5T5297 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y5T5MF_03062290 .
?templateMotifSequenceMatchRegionQ9Y5T5295 faldo:begin ?templateMotifSequenceMatchBeginQ9Y5T5296 .
?templateMotifSequenceMatchBeginQ9Y5T5296 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y5T5291 ;
faldo:reference isoform:Q9Y5T5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y5T5297 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
?targetMotifMatch298 faldo:location ?targetMotifMatchRegionMatch299 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03062301 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y5T5MF_03062292 .
?targetMotifMatchRegionMatch299 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03062300 .
?targetMotifMatchRegionMatchBeginMF_03062300 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03062293 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03062301 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y5T5MF_03062290, 1, (STRLEN(?templateMotifCigarQ9Y5T5MF_03062290) - STRLEN(REPLACE(?templateMotifCigarQ9Y5T5MF_03062290, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionQ9Y5T5291) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1302) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062292, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062292) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1302), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062292, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062292) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1302), '}'), '')))), '[^-]', ''))) AS ?step2303) .
BIND(((?step2303 + ?targetMotifMatchRegionMatchBeginPositionMF_03062293) - 1) AS ?thisPositionOn101) .
BIND(?thisPositionOn101 AS ?thisPositionOn102) .
BIND(?this AS ?pfs1t304) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfsb98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfse99) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn101, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03062a97')) AS ?annotation97) .
BIND(?this AS ?pfs96) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch309 faldo:location ?templateMotifSequenceMatchRegionQ9Y5T5310 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y5T5312 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y5T5MF_03062305 .
?templateMotifSequenceMatchRegionQ9Y5T5310 faldo:begin ?templateMotifSequenceMatchBeginQ9Y5T5311 .
?templateMotifSequenceMatchBeginQ9Y5T5311 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y5T5306 ;
faldo:reference isoform:Q9Y5T5-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y5T5312 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
?targetMotifMatch313 faldo:location ?targetMotifMatchRegionMatch314 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03062316 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y5T5MF_03062307 .
?targetMotifMatchRegionMatch314 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03062315 .
?targetMotifMatchRegionMatchBeginMF_03062315 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03062308 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03062316 edam:has_input signature:MF_03062 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y5T5MF_03062305, 1, (STRLEN(?templateMotifCigarQ9Y5T5MF_03062305) - STRLEN(REPLACE(?templateMotifCigarQ9Y5T5MF_03062305, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionQ9Y5T5306) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1317) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062307, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062307) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062307, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1317), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y5T5MF_03062307, 1, (STRLEN(?targetMotifMatchCigarQ9Y5T5MF_03062307) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y5T5MF_03062307, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1317), '}'), '')))), '[^-]', ''))) AS ?step2318) .
BIND(((?step2318 + ?targetMotifMatchRegionMatchBeginPositionMF_03062308) - 1) AS ?thisPositionOn108) .
BIND(?thisPositionOn108 AS ?thisPositionOn109) .
BIND(?this AS ?pfs1t319) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfsb105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfse106) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn108, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_03062a104')) AS ?annotation104) .
BIND(?this AS ?pfs103) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?case12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?case13) .
}
}
"xsd:string |
