| http://purl.uniprot.org/unirules/MF_03179#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:864202 up:source unirule:MF_03179 .
_:864203 up:source unirule:MF_03179 .
_:864204 up:source unirule:MF_03179 .
_:864205 up:source unirule:MF_03179 .
_:864206 up:source unirule:MF_03179 .
_:864207 up:source unirule:MF_03179 .
_:864208 up:source unirule:MF_03179 .
_:864209 up:source unirule:MF_03179 .
_:864210 up:source unirule:MF_03179 .
_:864211 up:source unirule:MF_03179 .
_:864212 up:source unirule:MF_03179 .
_:864213 up:source unirule:MF_03179 .
_:864214 up:source unirule:MF_03179 .
_:864215 up:source unirule:MF_03179 .
_:864216 up:source unirule:MF_03179 .
_:864217 up:source unirule:MF_03179 .
_:864218 up:source unirule:MF_03179 .
_:864219 up:source unirule:MF_03179 .
_:864220 up:source unirule:MF_03179 .
_:864221 up:source unirule:MF_03179 .
_:864222 up:source unirule:MF_03179 .
_:864223 up:source unirule:MF_03179 .
_:864224 up:source unirule:MF_03179 .
_:864225 up:source unirule:MF_03179 .
_:864226 up:source unirule:MF_03179 .
_:864227 up:source unirule:MF_03179 .
_:864228 up:source unirule:MF_03179 .
_:864229 up:source unirule:MF_03179 .
_:864230 up:source unirule:MF_03179 .
_:864231 up:source unirule:MF_03179 .
_:864232 up:source unirule:MF_03179 .
_:864233 up:source unirule:MF_03179 .
_:864234 up:source unirule:MF_03179 .
_:864235 up:source unirule:MF_03179 .
_:864236 up:source unirule:MF_03179 .
_:864237 up:source unirule:MF_03179 .
_:864238 up:source unirule:MF_03179 .
_:864239 up:source unirule:MF_03179 .
_:864240 up:source unirule:MF_03179 .
_:864241 up:source unirule:MF_03179 .
?this up:annotation ?annotation0 ,
?annotation1 ,
?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0002949 ,
GO:0005739 ,
GO:0016747 ,
keyword:12 ,
keyword:479 ,
keyword:496 ,
keyword:808 ,
keyword:819 .
?annotation0 a up:Function_Annotation ;
rdfs:comment 'Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in mitochondrial tRNAs that read codons beginning with adenine. Probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Involved in mitochondrial genome maintenance.' .
?annotation1 up:activity ?activity2 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity2 up:catalyticActivity ;
up:enzymeClass .
?annotation3 up:cofactor chebi:60240 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 divalent metal cation per subunit.' .
?annotation4 a up:Subcellular_Location_Annotation .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the KAE1 / TsaD family.' .
?case7 up:alternativeName ?name9 ,
?name10 ,
?name12 ;
up:recommendedName ?name8 .
?name8 up:ecName '2.3.1.234' ;
up:fullName 'tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial' ;
rdf:type up:Structured_Name .
?name9 up:fullName 'N6-L-threonylcarbamoyladenine synthase' ;
up:shortName 't(6)A synthase' ;
rdf:type up:Structured_Name .
?name10 up:fullName ?nameValue11 ;
rdf:type up:Structured_Name .
?name12 up:fullName ?nameValue13 ;
rdf:type up:Structured_Name .
?case14 up:alternativeName ?name16 ,
?name17 ,
?name19 ;
up:recommendedName ?name15 .
?name15 up:ecName '2.3.1.234' ;
up:fullName 'tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial' ;
rdf:type up:Structured_Name .
?name16 up:fullName 'N6-L-threonylcarbamoyladenine synthase' ;
up:shortName 't(6)A synthase' ;
rdf:type up:Structured_Name .
?name17 up:fullName ?nameValue18 ;
rdf:type up:Structured_Name .
?name19 up:fullName ?nameValue20 ;
rdf:type up:Structured_Name .
?case25 up:alternativeName ?name27 ,
?name28 ,
?name30 ;
up:recommendedName ?name26 .
?name26 up:ecName '2.3.1.234' ;
up:fullName 'Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial' ;
rdf:type up:Structured_Name .
?name27 up:fullName 'N6-L-threonylcarbamoyladenine synthase' ;
up:shortName 't(6)A synthase' ;
rdf:type up:Structured_Name .
?name28 up:fullName ?nameValue29 ;
rdf:type up:Structured_Name .
?name30 up:fullName ?nameValue31 ;
rdf:type up:Structured_Name .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf ?molecule37 .
?molecule37 rdfs:label 'substrate' .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf ?molecule45 .
?molecule45 rdfs:label 'substrate' .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
up:ligand ?ligand52 ;
rdf:type up:Binding_Site_Annotation .
?pfsb50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand52 rdfs:subClassOf chebi:60240 .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation .
?pfsb57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf chebi:60240 .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
up:ligand ?ligand66 ;
rdf:type up:Binding_Site_Annotation .
?pfsb64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?ligand66 rdfs:subClassOf chebi:60240 .
?pfs69 up:annotation ?annotation70 .
?annotation70 faldo:begin ?pfsb71 ;
faldo:end ?pfse72 ;
up:ligand ?ligand73 ;
rdf:type up:Binding_Site_Annotation .
?pfsb71 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse72 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?ligand73 rdfs:subClassOf ?molecule74 .
?molecule74 rdfs:label 'substrate' .
?pfs77 up:annotation ?annotation78 .
?annotation78 faldo:begin ?pfsb79 ;
faldo:end ?pfse80 ;
up:ligand ?ligand81 ;
rdf:type up:Binding_Site_Annotation .
?pfsb79 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?pfse80 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?ligand81 rdfs:subClassOf ?molecule82 .
?molecule82 rdfs:label 'substrate' .
?pfs85 up:annotation ?annotation86 .
?annotation86 faldo:begin ?pfsb87 ;
faldo:end ?pfse88 ;
up:ligand ?ligand89 ;
rdf:type up:Binding_Site_Annotation .
?pfsb87 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse88 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?ligand89 rdfs:subClassOf ?molecule90 .
?molecule90 rdfs:label 'substrate' .
?pfs93 up:annotation ?annotation94 .
?annotation94 faldo:begin ?pfsb95 ;
faldo:end ?pfse96 ;
up:ligand ?ligand97 ;
rdf:type up:Binding_Site_Annotation .
?pfsb95 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?pfse96 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?ligand97 rdfs:subClassOf ?molecule98 .
?molecule98 rdfs:label 'substrate' .
?pfs101 up:annotation ?annotation102 .
?annotation102 faldo:begin ?pfsb103 ;
faldo:end ?pfse104 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine' .
?pfsb103 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?pfse104 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?pfs107 up:annotation ?annotation108 .
?annotation108 faldo:begin ?pfsb109 ;
faldo:end ?pfse110 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine' .
?pfsb109 faldo:position ?thisPositionOn111 ;
rdf:type faldo:ExactPosition .
?pfse110 faldo:position ?thisPositionOn112 ;
rdf:type faldo:ExactPosition .
?pfs113 up:annotation ?annotation114 .
?annotation114 faldo:begin ?pfsb115 ;
faldo:end ?pfse116 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine' .
?pfsb115 faldo:position ?thisPositionOn117 ;
rdf:type faldo:ExactPosition .
?pfse116 faldo:position ?thisPositionOn118 ;
rdf:type faldo:ExactPosition .
?pfs119 up:annotation ?annotation120 .
?annotation120 faldo:begin ?pfsb121 ;
faldo:end ?pfse122 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine' .
?pfsb121 faldo:position ?thisPositionOn123 ;
rdf:type faldo:ExactPosition .
?pfse122 faldo:position ?thisPositionOn124 ;
rdf:type faldo:ExactPosition .
?pfs125 up:annotation ?annotation126 .
?annotation126 faldo:begin ?pfsb127 ;
faldo:end ?pfse128 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine' .
?pfsb127 faldo:position ?thisPositionOn129 ;
rdf:type faldo:ExactPosition .
?pfse128 faldo:position ?thisPositionOn130 ;
rdf:type faldo:ExactPosition .
?pfs131 up:annotation ?annotation132 .
?annotation132 faldo:begin ?pfsb133 ;
faldo:end ?pfse134 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine' .
?pfsb133 faldo:position ?thisPositionOn135 ;
rdf:type faldo:ExactPosition .
?pfse134 faldo:position ?thisPositionOn136 ;
rdf:type faldo:ExactPosition .
_:864242 a rdf:Statement ;
up:attribution _:864202 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:864243 a rdf:Statement ;
up:attribution _:864203 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:864244 a rdf:Statement ;
up:attribution _:864204 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:864245 a rdf:Statement ;
up:attribution _:864205 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:864246 a rdf:Statement ;
up:attribution _:864206 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:864247 a rdf:Statement ;
up:attribution _:864207 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:12 .
_:864248 a rdf:Statement ;
up:attribution _:864208 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:496 .
_:864249 a rdf:Statement ;
up:attribution _:864209 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:864250 a rdf:Statement ;
up:attribution _:864210 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:864251 a rdf:Statement ;
up:attribution _:864211 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:864252 a rdf:Statement ;
up:attribution _:864212 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005739 .
_:864253 a rdf:Statement ;
up:attribution _:864213 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016747 .
_:864254 a rdf:Statement ;
up:attribution _:864214 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0002949 .
_:864255 a rdf:Statement ;
up:attribution _:864215 ;
rdf:subject ?case7 ;
rdf:predicate up:recommendedName ;
rdf:object ?name8 .
_:864256 a rdf:Statement ;
up:attribution _:864216 ;
rdf:subject ?case7 ;
rdf:predicate up:alternativeName ;
rdf:object ?name9 .
_:864257 a rdf:Statement ;
up:attribution _:864217 ;
rdf:subject ?case7 ;
rdf:predicate up:alternativeName ;
rdf:object ?name10 .
_:864258 a rdf:Statement ;
up:attribution _:864218 ;
rdf:subject ?case7 ;
rdf:predicate up:alternativeName ;
rdf:object ?name12 .
_:864259 a rdf:Statement ;
up:attribution _:864219 ;
rdf:subject ?case14 ;
rdf:predicate up:recommendedName ;
rdf:object ?name15 .
_:864260 a rdf:Statement ;
up:attribution _:864220 ;
rdf:subject ?case14 ;
rdf:predicate up:alternativeName ;
rdf:object ?name16 .
_:864261 a rdf:Statement ;
up:attribution _:864221 ;
rdf:subject ?case14 ;
rdf:predicate up:alternativeName ;
rdf:object ?name17 .
_:864262 a rdf:Statement ;
up:attribution _:864222 ;
rdf:subject ?case14 ;
rdf:predicate up:alternativeName ;
rdf:object ?name19 .
_:864263 a rdf:Statement ;
up:attribution _:864223 ;
rdf:subject ?case25 ;
rdf:predicate up:recommendedName ;
rdf:object ?name26 .
_:864264 a rdf:Statement ;
up:attribution _:864224 ;
rdf:subject ?case25 ;
rdf:predicate up:alternativeName ;
rdf:object ?name27 .
_:864265 a rdf:Statement ;
up:attribution _:864225 ;
rdf:subject ?case25 ;
rdf:predicate up:alternativeName ;
rdf:object ?name28 .
_:864266 a rdf:Statement ;
up:attribution _:864226 ;
rdf:subject ?case25 ;
rdf:predicate up:alternativeName ;
rdf:object ?name30 .
_:864267 a rdf:Statement ;
up:source unirule:MF_03179 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:864268 a rdf:Statement ;
up:attribution _:864227 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:864269 a rdf:Statement ;
up:source unirule:MF_03179 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:864270 a rdf:Statement ;
up:attribution _:864228 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:864271 a rdf:Statement ;
up:source unirule:MF_03179 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:864272 a rdf:Statement ;
up:attribution _:864229 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:864273 a rdf:Statement ;
up:source unirule:MF_03179 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:864274 a rdf:Statement ;
up:attribution _:864230 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:864275 a rdf:Statement ;
up:source unirule:MF_03179 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:864276 a rdf:Statement ;
up:attribution _:864231 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:864277 a rdf:Statement ;
up:source unirule:MF_03179 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:864278 a rdf:Statement ;
up:attribution _:864232 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:864279 a rdf:Statement ;
up:source unirule:MF_03179 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:864280 a rdf:Statement ;
up:attribution _:864233 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:864281 a rdf:Statement ;
up:source unirule:MF_03179 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
_:864282 a rdf:Statement ;
up:attribution _:864234 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
_:864283 a rdf:Statement ;
up:source unirule:MF_03179 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:864284 a rdf:Statement ;
up:attribution _:864235 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:864285 a rdf:Statement ;
up:source unirule:MF_03179 ;
rdf:subject ?pfs101 ;
rdf:predicate up:annotation ;
rdf:object ?annotation102 .
_:864286 a rdf:Statement ;
up:attribution _:864236 ;
rdf:subject ?pfs101 ;
rdf:predicate up:annotation ;
rdf:object ?annotation102 .
_:864287 a rdf:Statement ;
up:source unirule:MF_03179 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:864288 a rdf:Statement ;
up:attribution _:864237 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:864289 a rdf:Statement ;
up:source unirule:MF_03179 ;
rdf:subject ?pfs113 ;
rdf:predicate up:annotation ;
rdf:object ?annotation114 .
_:864290 a rdf:Statement ;
up:attribution _:864238 ;
rdf:subject ?pfs113 ;
rdf:predicate up:annotation ;
rdf:object ?annotation114 .
_:864291 a rdf:Statement ;
up:source unirule:MF_03179 ;
rdf:subject ?pfs119 ;
rdf:predicate up:annotation ;
rdf:object ?annotation120 .
_:864292 a rdf:Statement ;
up:attribution _:864239 ;
rdf:subject ?pfs119 ;
rdf:predicate up:annotation ;
rdf:object ?annotation120 .
_:864293 a rdf:Statement ;
up:source unirule:MF_03179 ;
rdf:subject ?pfs125 ;
rdf:predicate up:annotation ;
rdf:object ?annotation126 .
_:864294 a rdf:Statement ;
up:attribution _:864240 ;
rdf:subject ?pfs125 ;
rdf:predicate up:annotation ;
rdf:object ?annotation126 .
_:864295 a rdf:Statement ;
up:source unirule:MF_03179 ;
rdf:subject ?pfs131 ;
rdf:predicate up:annotation ;
rdf:object ?annotation132 .
_:864296 a rdf:Statement ;
up:attribution _:864241 ;
rdf:subject ?pfs131 ;
rdf:predicate up:annotation ;
rdf:object ?annotation132 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03179
#Rule MF_03179 Created by:? on:2013-10-17 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01445 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03179a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch141 faldo:location ?templateMotifSequenceMatchRegionP43122142 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP43122144 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP43122MF_01445137 .
?templateMotifSequenceMatchRegionP43122142 faldo:begin ?templateMotifSequenceMatchBeginP43122143 .
?templateMotifSequenceMatchBeginP43122143 faldo:position ?templateMotifSequenceMatchBeginPositionP43122138 ;
faldo:reference isoform:P43122-1 .
?templateMotifSequenceProfileAlignmentOperationP43122144 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
?targetMotifMatch145 faldo:location ?targetMotifMatchRegionMatch146 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445148 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP43122MF_01445139 .
?targetMotifMatchRegionMatch146 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445147 .
?targetMotifMatchRegionMatchBeginMF_01445147 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445140 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01445148 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43122MF_01445137, 1, (STRLEN(?templateMotifCigarP43122MF_01445137) - STRLEN(REPLACE(?templateMotifCigarP43122MF_01445137, CONCAT('^(?:-*[^-]){', STR(((170 - ?templateMotifSequenceMatchBeginPositionP43122138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43122MF_01445139, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445139) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43122MF_01445139, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445139) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) .
BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_01445140) - 1) AS ?thisPositionOn38) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43122MF_01445137, 1, (STRLEN(?templateMotifCigarP43122MF_01445137) - STRLEN(REPLACE(?templateMotifCigarP43122MF_01445137, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionP43122138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43122MF_01445139, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445139) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43122MF_01445139, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445139) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) .
BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_01445140) - 1) AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t153) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse35) .
FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]SG[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn38, (?thisPositionOn39 - ?thisPositionOn38)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionP43122159 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP43122161 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP43122MF_01445154 .
?templateMotifSequenceMatchRegionP43122159 faldo:begin ?templateMotifSequenceMatchBeginP43122160 .
?templateMotifSequenceMatchBeginP43122160 faldo:position ?templateMotifSequenceMatchBeginPositionP43122155 ;
faldo:reference isoform:P43122-1 .
?templateMotifSequenceProfileAlignmentOperationP43122161 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445165 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP43122MF_01445156 .
?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445164 .
?targetMotifMatchRegionMatchBeginMF_01445164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445157 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01445165 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43122MF_01445154, 1, (STRLEN(?templateMotifCigarP43122MF_01445154) - STRLEN(REPLACE(?templateMotifCigarP43122MF_01445154, CONCAT('^(?:-*[^-]){', STR(((328 - ?templateMotifSequenceMatchBeginPositionP43122155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43122MF_01445156, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445156) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43122MF_01445156, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445156) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) .
BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_01445157) - 1) AS ?thisPositionOn46) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43122MF_01445154, 1, (STRLEN(?templateMotifCigarP43122MF_01445154) - STRLEN(REPLACE(?templateMotifCigarP43122MF_01445154, CONCAT('^(?:-*[^-]){', STR(((329 - ?templateMotifSequenceMatchBeginPositionP43122155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43122MF_01445156, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445156) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43122MF_01445156, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445156) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) .
BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_01445157) - 1) AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t170) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse43) .
FILTER (REGEX('[ARNDCQEGHILKMFPSTWYVBZJUOX]N', SUBSTR(?thisSequenceValue, ?thisPositionOn46, (?thisPositionOn47 - ?thisPositionOn46)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch175 faldo:location ?templateMotifSequenceMatchRegionP43122176 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP43122178 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP43122MF_01445171 .
?templateMotifSequenceMatchRegionP43122176 faldo:begin ?templateMotifSequenceMatchBeginP43122177 .
?templateMotifSequenceMatchBeginP43122177 faldo:position ?templateMotifSequenceMatchBeginPositionP43122172 ;
faldo:reference isoform:P43122-1 .
?templateMotifSequenceProfileAlignmentOperationP43122178 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
?targetMotifMatch179 faldo:location ?targetMotifMatchRegionMatch180 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445182 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP43122MF_01445173 .
?targetMotifMatchRegionMatch180 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445181 .
?targetMotifMatchRegionMatchBeginMF_01445181 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445174 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01445182 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43122MF_01445171, 1, (STRLEN(?templateMotifCigarP43122MF_01445171) - STRLEN(REPLACE(?templateMotifCigarP43122MF_01445171, CONCAT('^(?:-*[^-]){', STR(((145 - ?templateMotifSequenceMatchBeginPositionP43122172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43122MF_01445173, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445173) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43122MF_01445173, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445173) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), '')))), '[^-]', ''))) AS ?step2184) .
BIND(((?step2184 + ?targetMotifMatchRegionMatchBeginPositionMF_01445174) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs1t185) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch190 faldo:location ?templateMotifSequenceMatchRegionP43122191 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP43122193 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP43122MF_01445186 .
?templateMotifSequenceMatchRegionP43122191 faldo:begin ?templateMotifSequenceMatchBeginP43122192 .
?templateMotifSequenceMatchBeginP43122192 faldo:position ?templateMotifSequenceMatchBeginPositionP43122187 ;
faldo:reference isoform:P43122-1 .
?templateMotifSequenceProfileAlignmentOperationP43122193 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
?targetMotifMatch194 faldo:location ?targetMotifMatchRegionMatch195 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445197 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP43122MF_01445188 .
?targetMotifMatchRegionMatch195 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445196 .
?targetMotifMatchRegionMatchBeginMF_01445196 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445189 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01445197 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43122MF_01445186, 1, (STRLEN(?templateMotifCigarP43122MF_01445186) - STRLEN(REPLACE(?templateMotifCigarP43122MF_01445186, CONCAT('^(?:-*[^-]){', STR(((149 - ?templateMotifSequenceMatchBeginPositionP43122187) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43122MF_01445188, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445188) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43122MF_01445188, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445188) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445188, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1198), '}'), '')))), '[^-]', ''))) AS ?step2199) .
BIND(((?step2199 + ?targetMotifMatchRegionMatchBeginPositionMF_01445189) - 1) AS ?thisPositionOn60) .
BIND(?thisPositionOn60 AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t200) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch205 faldo:location ?templateMotifSequenceMatchRegionP43122206 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP43122208 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP43122MF_01445201 .
?templateMotifSequenceMatchRegionP43122206 faldo:begin ?templateMotifSequenceMatchBeginP43122207 .
?templateMotifSequenceMatchBeginP43122207 faldo:position ?templateMotifSequenceMatchBeginPositionP43122202 ;
faldo:reference isoform:P43122-1 .
?templateMotifSequenceProfileAlignmentOperationP43122208 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
?targetMotifMatch209 faldo:location ?targetMotifMatchRegionMatch210 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445212 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP43122MF_01445203 .
?targetMotifMatchRegionMatch210 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445211 .
?targetMotifMatchRegionMatchBeginMF_01445211 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445204 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01445212 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43122MF_01445201, 1, (STRLEN(?templateMotifCigarP43122MF_01445201) - STRLEN(REPLACE(?templateMotifCigarP43122MF_01445201, CONCAT('^(?:-*[^-]){', STR(((361 - ?templateMotifSequenceMatchBeginPositionP43122202) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1213) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43122MF_01445203, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445203) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43122MF_01445203, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445203) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445203, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1213), '}'), '')))), '[^-]', ''))) AS ?step2214) .
BIND(((?step2214 + ?targetMotifMatchRegionMatchBeginPositionMF_01445204) - 1) AS ?thisPositionOn67) .
BIND(?thisPositionOn67 AS ?thisPositionOn68) .
BIND(?this AS ?pfs1t215) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch220 faldo:location ?templateMotifSequenceMatchRegionP43122221 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP43122223 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP43122MF_01445216 .
?templateMotifSequenceMatchRegionP43122221 faldo:begin ?templateMotifSequenceMatchBeginP43122222 .
?templateMotifSequenceMatchBeginP43122222 faldo:position ?templateMotifSequenceMatchBeginPositionP43122217 ;
faldo:reference isoform:P43122-1 .
?templateMotifSequenceProfileAlignmentOperationP43122223 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
?targetMotifMatch224 faldo:location ?targetMotifMatchRegionMatch225 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445227 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP43122MF_01445218 .
?targetMotifMatchRegionMatch225 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445226 .
?targetMotifMatchRegionMatchBeginMF_01445226 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445219 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01445227 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43122MF_01445216, 1, (STRLEN(?templateMotifCigarP43122MF_01445216) - STRLEN(REPLACE(?templateMotifCigarP43122MF_01445216, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionP43122217) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1228) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43122MF_01445218, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445218) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1228), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43122MF_01445218, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445218) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445218, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1228), '}'), '')))), '[^-]', ''))) AS ?step2229) .
BIND(((?step2229 + ?targetMotifMatchRegionMatchBeginPositionMF_01445219) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs1t230) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse72) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch235 faldo:location ?templateMotifSequenceMatchRegionP43122236 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP43122238 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP43122MF_01445231 .
?templateMotifSequenceMatchRegionP43122236 faldo:begin ?templateMotifSequenceMatchBeginP43122237 .
?templateMotifSequenceMatchBeginP43122237 faldo:position ?templateMotifSequenceMatchBeginPositionP43122232 ;
faldo:reference isoform:P43122-1 .
?templateMotifSequenceProfileAlignmentOperationP43122238 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
?targetMotifMatch239 faldo:location ?targetMotifMatchRegionMatch240 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445242 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP43122MF_01445233 .
?targetMotifMatchRegionMatch240 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445241 .
?targetMotifMatchRegionMatchBeginMF_01445241 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445234 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01445242 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43122MF_01445231, 1, (STRLEN(?templateMotifCigarP43122MF_01445231) - STRLEN(REPLACE(?templateMotifCigarP43122MF_01445231, CONCAT('^(?:-*[^-]){', STR(((217 - ?templateMotifSequenceMatchBeginPositionP43122232) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1243) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43122MF_01445233, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445233) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445233, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43122MF_01445233, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445233) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445233, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1243), '}'), '')))), '[^-]', ''))) AS ?step2244) .
BIND(((?step2244 + ?targetMotifMatchRegionMatchBeginPositionMF_01445234) - 1) AS ?thisPositionOn83) .
BIND(?thisPositionOn83 AS ?thisPositionOn84) .
BIND(?this AS ?pfs1t245) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse80) .
FILTER (REGEX('[GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn83, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a78')) AS ?annotation78) .
BIND(?this AS ?pfs77) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch250 faldo:location ?templateMotifSequenceMatchRegionP43122251 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP43122253 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP43122MF_01445246 .
?templateMotifSequenceMatchRegionP43122251 faldo:begin ?templateMotifSequenceMatchBeginP43122252 .
?templateMotifSequenceMatchBeginP43122252 faldo:position ?templateMotifSequenceMatchBeginPositionP43122247 ;
faldo:reference isoform:P43122-1 .
?templateMotifSequenceProfileAlignmentOperationP43122253 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
?targetMotifMatch254 faldo:location ?targetMotifMatchRegionMatch255 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445257 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP43122MF_01445248 .
?targetMotifMatchRegionMatch255 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445256 .
?targetMotifMatchRegionMatchBeginMF_01445256 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445249 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01445257 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43122MF_01445246, 1, (STRLEN(?templateMotifCigarP43122MF_01445246) - STRLEN(REPLACE(?templateMotifCigarP43122MF_01445246, CONCAT('^(?:-*[^-]){', STR(((221 - ?templateMotifSequenceMatchBeginPositionP43122247) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1258) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43122MF_01445248, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445248) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43122MF_01445248, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445248) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), '')))), '[^-]', ''))) AS ?step2259) .
BIND(((?step2259 + ?targetMotifMatchRegionMatchBeginPositionMF_01445249) - 1) AS ?thisPositionOn91) .
BIND(?thisPositionOn91 AS ?thisPositionOn92) .
BIND(?this AS ?pfs1t260) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse88) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a86')) AS ?annotation86) .
BIND(?this AS ?pfs85) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch265 faldo:location ?templateMotifSequenceMatchRegionP43122266 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP43122268 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP43122MF_01445261 .
?templateMotifSequenceMatchRegionP43122266 faldo:begin ?templateMotifSequenceMatchBeginP43122267 .
?templateMotifSequenceMatchBeginP43122267 faldo:position ?templateMotifSequenceMatchBeginPositionP43122262 ;
faldo:reference isoform:P43122-1 .
?templateMotifSequenceProfileAlignmentOperationP43122268 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
?targetMotifMatch269 faldo:location ?targetMotifMatchRegionMatch270 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445272 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP43122MF_01445263 .
?targetMotifMatchRegionMatch270 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445271 .
?targetMotifMatchRegionMatchBeginMF_01445271 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445264 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01445272 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP43122MF_01445261, 1, (STRLEN(?templateMotifCigarP43122MF_01445261) - STRLEN(REPLACE(?templateMotifCigarP43122MF_01445261, CONCAT('^(?:-*[^-]){', STR(((360 - ?templateMotifSequenceMatchBeginPositionP43122262) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1273) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP43122MF_01445263, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445263) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1273), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP43122MF_01445263, 1, (STRLEN(?targetMotifMatchCigarP43122MF_01445263) - STRLEN(REPLACE(?targetMotifMatchCigarP43122MF_01445263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1273), '}'), '')))), '[^-]', ''))) AS ?step2274) .
BIND(((?step2274 + ?targetMotifMatchRegionMatchBeginPositionMF_01445264) - 1) AS ?thisPositionOn99) .
BIND(?thisPositionOn99 AS ?thisPositionOn100) .
BIND(?this AS ?pfs1t275) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfsb95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfse96) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn99, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a94')) AS ?annotation94) .
BIND(?this AS ?pfs93) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch280 faldo:location ?templateMotifSequenceMatchRegionQ9H4B0281 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9H4B0283 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9H4B0MF_01445276 .
?templateMotifSequenceMatchRegionQ9H4B0281 faldo:begin ?templateMotifSequenceMatchBeginQ9H4B0282 .
?templateMotifSequenceMatchBeginQ9H4B0282 faldo:position ?templateMotifSequenceMatchBeginPositionQ9H4B0277 ;
faldo:reference isoform:Q9H4B0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9H4B0283 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
?targetMotifMatch284 faldo:location ?targetMotifMatchRegionMatch285 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445287 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9H4B0MF_01445278 .
?targetMotifMatchRegionMatch285 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445286 .
?targetMotifMatchRegionMatchBeginMF_01445286 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445279 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01445287 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9H4B0MF_01445276, 1, (STRLEN(?templateMotifCigarQ9H4B0MF_01445276) - STRLEN(REPLACE(?templateMotifCigarQ9H4B0MF_01445276, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionQ9H4B0277) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1288) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9H4B0MF_01445278, 1, (STRLEN(?targetMotifMatchCigarQ9H4B0MF_01445278) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H4B0MF_01445278, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1288), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9H4B0MF_01445278, 1, (STRLEN(?targetMotifMatchCigarQ9H4B0MF_01445278) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H4B0MF_01445278, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1288), '}'), '')))), '[^-]', ''))) AS ?step2289) .
BIND(((?step2289 + ?targetMotifMatchRegionMatchBeginPositionMF_01445279) - 1) AS ?thisPositionOn105) .
BIND(?thisPositionOn105 AS ?thisPositionOn106) .
BIND(?this AS ?pfs2t290) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse104) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a102')) AS ?annotation102) .
BIND(?this AS ?pfs101) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch295 faldo:location ?templateMotifSequenceMatchRegionQ9H4B0296 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9H4B0298 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9H4B0MF_01445291 .
?templateMotifSequenceMatchRegionQ9H4B0296 faldo:begin ?templateMotifSequenceMatchBeginQ9H4B0297 .
?templateMotifSequenceMatchBeginQ9H4B0297 faldo:position ?templateMotifSequenceMatchBeginPositionQ9H4B0292 ;
faldo:reference isoform:Q9H4B0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9H4B0298 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
?targetMotifMatch299 faldo:location ?targetMotifMatchRegionMatch300 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445302 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9H4B0MF_01445293 .
?targetMotifMatchRegionMatch300 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445301 .
?targetMotifMatchRegionMatchBeginMF_01445301 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445294 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01445302 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9H4B0MF_01445291, 1, (STRLEN(?templateMotifCigarQ9H4B0MF_01445291) - STRLEN(REPLACE(?templateMotifCigarQ9H4B0MF_01445291, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionQ9H4B0292) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1303) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9H4B0MF_01445293, 1, (STRLEN(?targetMotifMatchCigarQ9H4B0MF_01445293) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H4B0MF_01445293, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1303), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9H4B0MF_01445293, 1, (STRLEN(?targetMotifMatchCigarQ9H4B0MF_01445293) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H4B0MF_01445293, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1303), '}'), '')))), '[^-]', ''))) AS ?step2304) .
BIND(((?step2304 + ?targetMotifMatchRegionMatchBeginPositionMF_01445294) - 1) AS ?thisPositionOn111) .
BIND(?thisPositionOn111 AS ?thisPositionOn112) .
BIND(?this AS ?pfs2t305) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfsb109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfse110) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn111, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a108')) AS ?annotation108) .
BIND(?this AS ?pfs107) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch310 faldo:location ?templateMotifSequenceMatchRegionQ9H4B0311 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9H4B0313 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9H4B0MF_01445306 .
?templateMotifSequenceMatchRegionQ9H4B0311 faldo:begin ?templateMotifSequenceMatchBeginQ9H4B0312 .
?templateMotifSequenceMatchBeginQ9H4B0312 faldo:position ?templateMotifSequenceMatchBeginPositionQ9H4B0307 ;
faldo:reference isoform:Q9H4B0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9H4B0313 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
?targetMotifMatch314 faldo:location ?targetMotifMatchRegionMatch315 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445317 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9H4B0MF_01445308 .
?targetMotifMatchRegionMatch315 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445316 .
?targetMotifMatchRegionMatchBeginMF_01445316 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445309 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01445317 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9H4B0MF_01445306, 1, (STRLEN(?templateMotifCigarQ9H4B0MF_01445306) - STRLEN(REPLACE(?templateMotifCigarQ9H4B0MF_01445306, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionQ9H4B0307) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1318) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9H4B0MF_01445308, 1, (STRLEN(?targetMotifMatchCigarQ9H4B0MF_01445308) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H4B0MF_01445308, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1318), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9H4B0MF_01445308, 1, (STRLEN(?targetMotifMatchCigarQ9H4B0MF_01445308) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H4B0MF_01445308, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1318), '}'), '')))), '[^-]', ''))) AS ?step2319) .
BIND(((?step2319 + ?targetMotifMatchRegionMatchBeginPositionMF_01445309) - 1) AS ?thisPositionOn117) .
BIND(?thisPositionOn117 AS ?thisPositionOn118) .
BIND(?this AS ?pfs2t320) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfsb115) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn118))) AS ?pfse116) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn117, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a114')) AS ?annotation114) .
BIND(?this AS ?pfs113) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch325 faldo:location ?templateMotifSequenceMatchRegionQ9H4B0326 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9H4B0328 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9H4B0MF_01445321 .
?templateMotifSequenceMatchRegionQ9H4B0326 faldo:begin ?templateMotifSequenceMatchBeginQ9H4B0327 .
?templateMotifSequenceMatchBeginQ9H4B0327 faldo:position ?templateMotifSequenceMatchBeginPositionQ9H4B0322 ;
faldo:reference isoform:Q9H4B0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9H4B0328 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
?targetMotifMatch329 faldo:location ?targetMotifMatchRegionMatch330 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445332 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9H4B0MF_01445323 .
?targetMotifMatchRegionMatch330 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445331 .
?targetMotifMatchRegionMatchBeginMF_01445331 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445324 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01445332 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9H4B0MF_01445321, 1, (STRLEN(?templateMotifCigarQ9H4B0MF_01445321) - STRLEN(REPLACE(?templateMotifCigarQ9H4B0MF_01445321, CONCAT('^(?:-*[^-]){', STR(((230 - ?templateMotifSequenceMatchBeginPositionQ9H4B0322) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1333) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9H4B0MF_01445323, 1, (STRLEN(?targetMotifMatchCigarQ9H4B0MF_01445323) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H4B0MF_01445323, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1333), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9H4B0MF_01445323, 1, (STRLEN(?targetMotifMatchCigarQ9H4B0MF_01445323) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H4B0MF_01445323, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1333), '}'), '')))), '[^-]', ''))) AS ?step2334) .
BIND(((?step2334 + ?targetMotifMatchRegionMatchBeginPositionMF_01445324) - 1) AS ?thisPositionOn123) .
BIND(?thisPositionOn123 AS ?thisPositionOn124) .
BIND(?this AS ?pfs2t335) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn123))) AS ?pfsb121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn124))) AS ?pfse122) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn123, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a120')) AS ?annotation120) .
BIND(?this AS ?pfs119) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch340 faldo:location ?templateMotifSequenceMatchRegionQ9H4B0341 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9H4B0343 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9H4B0MF_01445336 .
?templateMotifSequenceMatchRegionQ9H4B0341 faldo:begin ?templateMotifSequenceMatchBeginQ9H4B0342 .
?templateMotifSequenceMatchBeginQ9H4B0342 faldo:position ?templateMotifSequenceMatchBeginPositionQ9H4B0337 ;
faldo:reference isoform:Q9H4B0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9H4B0343 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
?targetMotifMatch344 faldo:location ?targetMotifMatchRegionMatch345 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445347 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9H4B0MF_01445338 .
?targetMotifMatchRegionMatch345 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445346 .
?targetMotifMatchRegionMatchBeginMF_01445346 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445339 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01445347 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9H4B0MF_01445336, 1, (STRLEN(?templateMotifCigarQ9H4B0MF_01445336) - STRLEN(REPLACE(?templateMotifCigarQ9H4B0MF_01445336, CONCAT('^(?:-*[^-]){', STR(((240 - ?templateMotifSequenceMatchBeginPositionQ9H4B0337) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1348) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9H4B0MF_01445338, 1, (STRLEN(?targetMotifMatchCigarQ9H4B0MF_01445338) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H4B0MF_01445338, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1348), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9H4B0MF_01445338, 1, (STRLEN(?targetMotifMatchCigarQ9H4B0MF_01445338) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H4B0MF_01445338, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1348), '}'), '')))), '[^-]', ''))) AS ?step2349) .
BIND(((?step2349 + ?targetMotifMatchRegionMatchBeginPositionMF_01445339) - 1) AS ?thisPositionOn129) .
BIND(?thisPositionOn129 AS ?thisPositionOn130) .
BIND(?this AS ?pfs2t350) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn129))) AS ?pfsb127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn130))) AS ?pfse128) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn129, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a126')) AS ?annotation126) .
BIND(?this AS ?pfs125) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch355 faldo:location ?templateMotifSequenceMatchRegionQ9H4B0356 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9H4B0358 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9H4B0MF_01445351 .
?templateMotifSequenceMatchRegionQ9H4B0356 faldo:begin ?templateMotifSequenceMatchBeginQ9H4B0357 .
?templateMotifSequenceMatchBeginQ9H4B0357 faldo:position ?templateMotifSequenceMatchBeginPositionQ9H4B0352 ;
faldo:reference isoform:Q9H4B0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9H4B0358 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
?targetMotifMatch359 faldo:location ?targetMotifMatchRegionMatch360 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01445362 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9H4B0MF_01445353 .
?targetMotifMatchRegionMatch360 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01445361 .
?targetMotifMatchRegionMatchBeginMF_01445361 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01445354 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01445362 edam:has_input signature:MF_01445 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9H4B0MF_01445351, 1, (STRLEN(?templateMotifCigarQ9H4B0MF_01445351) - STRLEN(REPLACE(?templateMotifCigarQ9H4B0MF_01445351, CONCAT('^(?:-*[^-]){', STR(((299 - ?templateMotifSequenceMatchBeginPositionQ9H4B0352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1363) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9H4B0MF_01445353, 1, (STRLEN(?targetMotifMatchCigarQ9H4B0MF_01445353) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H4B0MF_01445353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1363), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9H4B0MF_01445353, 1, (STRLEN(?targetMotifMatchCigarQ9H4B0MF_01445353) - STRLEN(REPLACE(?targetMotifMatchCigarQ9H4B0MF_01445353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1363), '}'), '')))), '[^-]', ''))) AS ?step2364) .
BIND(((?step2364 + ?targetMotifMatchRegionMatchBeginPositionMF_01445354) - 1) AS ?thisPositionOn135) .
BIND(?thisPositionOn135 AS ?thisPositionOn136) .
BIND(?this AS ?pfs2t365) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn135))) AS ?pfsb133) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn136))) AS ?pfse134) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn135, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a132')) AS ?annotation132) .
BIND(?this AS ?pfs131) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(?this AS ?case7) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a8')) AS ?name8) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a9')) AS ?name9) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a10')) AS ?name10) .
OPTIONAL {
?this up:encodedBy ?gene369 .
?gene369 up:locusName ?geneLocus367 .
}
OPTIONAL {
?this up:encodedBy ?gene369 .
?gene369 up:orfName ?geneOrf368 .
}
BIND(IF(BOUND(?geneLocus367), ?geneLocus367, ?geneOrf368) AS ?part366) .
BIND(CONCAT('t(6)A37 threonylcarbamoyladenosine biosynthesis protein ', ?part366) AS ?nameValue11) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a12')) AS ?name12) .
OPTIONAL {
?this up:encodedBy ?gene373 .
?gene373 up:locusName ?geneLocus371 .
}
OPTIONAL {
?this up:encodedBy ?gene373 .
?gene373 up:orfName ?geneOrf372 .
}
BIND(IF(BOUND(?geneLocus371), ?geneLocus371, ?geneOrf372) AS ?part370) .
BIND(CONCAT('tRNA threonylcarbamoyladenosine biosynthesis protein ', ?part370) AS ?nameValue13) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case14) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a15')) AS ?name15) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a16')) AS ?name16) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a17')) AS ?name17) .
OPTIONAL {
?this up:encodedBy ?gene377 .
?gene377 up:locusName ?geneLocus375 .
}
OPTIONAL {
?this up:encodedBy ?gene377 .
?gene377 up:orfName ?geneOrf376 .
}
BIND(IF(BOUND(?geneLocus375), ?geneLocus375, ?geneOrf376) AS ?part374) .
BIND(CONCAT('t(6)A37 threonylcarbamoyladenosine biosynthesis protein ', ?part374) AS ?nameValue18) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a19')) AS ?name19) .
OPTIONAL {
?this up:encodedBy ?gene381 .
?gene381 up:locusName ?geneLocus379 .
}
OPTIONAL {
?this up:encodedBy ?gene381 .
?gene381 up:orfName ?geneOrf380 .
}
BIND(IF(BOUND(?geneLocus379), ?geneLocus379, ?geneOrf380) AS ?part378) .
BIND(CONCAT('tRNA threonylcarbamoyladenosine biosynthesis protein ', ?part378) AS ?nameValue20) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
BIND(?this AS ?case21) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:6237 .
BIND(?this AS ?case22) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:147537 .
BIND(?this AS ?case23) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:7742 .
})) .
BIND(?this AS ?case24) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon382 {taxon:7742 taxon:4751}
?thisOrganism rdfs:subClassOf+ ?supertaxon382 .
})) .
BIND(?this AS ?case25) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a26')) AS ?name26) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a27')) AS ?name27) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a28')) AS ?name28) .
OPTIONAL {
?this up:encodedBy ?gene386 .
?gene386 up:locusName ?geneLocus384 .
}
OPTIONAL {
?this up:encodedBy ?gene386 .
?gene386 up:orfName ?geneOrf385 .
}
BIND(IF(BOUND(?geneLocus384), ?geneLocus384, ?geneOrf385) AS ?part383) .
BIND(CONCAT('t(6)A37 threonylcarbamoyladenosine biosynthesis protein ', ?part383) AS ?nameValue29) .
BIND(URI(CONCAT(STR(?this), '#MF_03179a30')) AS ?name30) .
OPTIONAL {
?this up:encodedBy ?gene390 .
?gene390 up:locusName ?geneLocus388 .
}
OPTIONAL {
?this up:encodedBy ?gene390 .
?gene390 up:orfName ?geneOrf389 .
}
BIND(IF(BOUND(?geneLocus388), ?geneLocus388, ?geneOrf389) AS ?part387) .
BIND(CONCAT('tRNA threonylcarbamoyladenosine biosynthesis protein ', ?part387) AS ?nameValue31) .
}
}
"xsd:string |
