| http://purl.uniprot.org/unirules/MF_04047#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:911508 up:source unirule:MF_04047 .
_:911509 up:source unirule:MF_04047 .
_:911510 up:source unirule:MF_04047 .
_:911511 up:source unirule:MF_04047 .
_:911512 up:fullName 'Hexon-linking protein IIIa' ;
rdf:type up:Structured_Name .
_:911513 up:source unirule:MF_04047 .
_:911514 up:source unirule:MF_04047 .
_:911515 up:source unirule:MF_04047 .
_:911516 up:source unirule:MF_04047 .
_:911517 up:source unirule:MF_04047 .
_:911518 up:source unirule:MF_04047 .
_:911519 up:source unirule:MF_04047 .
_:911520 up:source unirule:MF_04047 .
_:911521 up:source unirule:MF_04047 .
_:911522 up:source unirule:MF_04047 .
_:911523 up:source unirule:MF_04047 .
_:911524 up:source unirule:MF_04047 .
_:911525 up:source unirule:MF_04047 .
_:911526 up:source unirule:MF_04047 .
_:911527 up:source unirule:MF_04047 .
_:911528 up:source unirule:MF_04047 .
_:911529 up:source unirule:MF_04047 .
_:911530 up:source unirule:MF_04047 .
_:911531 up:source unirule:MF_04047 .
_:911532 up:source unirule:MF_04047 .
_:911533 up:source unirule:MF_04047 .
_:911534 up:source unirule:MF_04047 .
_:911535 up:source unirule:MF_04047 .
_:911536 up:source unirule:MF_04047 .
_:911537 up:source unirule:MF_04047 .
_:911538 up:source unirule:MF_04047 .
_:911539 up:source unirule:MF_04047 .
_:911540 up:source unirule:MF_04047 .
_:911541 up:source unirule:MF_04047 .
_:911542 up:source unirule:MF_04047 .
_:911543 up:source unirule:MF_04047 .
_:911544 up:source unirule:MF_04047 .
_:911545 up:source unirule:MF_04047 .
_:911546 up:source unirule:MF_04047 .
_:911547 up:source unirule:MF_04047 .
_:911548 up:source unirule:MF_04047 .
_:911549 up:source unirule:MF_04047 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation10 ,
?annotation11 ,
?annotation12 ,
?annotation13 ;
up:classifiedWith GO:0019028 ,
GO:0042025 ,
GO:0098021 ,
keyword:1048 ,
keyword:1188 ,
keyword:1232 ,
keyword:167 ,
keyword:231 ,
keyword:426 ,
keyword:597 ,
keyword:946 ;
up:component ?namedpart4 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Pre-hexon-linking protein IIIa' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Capsid vertex-specific component IIIa' ;
up:shortName 'CVSC' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Protein IIIa' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'pIIIa' ;
rdf:type up:Structured_Name .
?namedpart4 up:recommendedName _:911512 .
?annotation5 a up:Function_Annotation ;
rdfs:comment '[Hexon-linking protein IIIa]: Structural component of the virion that acts as a cement protein on the capsid interior and which mediates the interactions between the hexons, including the peripentonal hexons, and reaches all the way to the penton vertices. Two hexon linking proteins IIIa, one from each facet, stabilize the unique edge interface between a pair of facets. As the virus enters the host cell, hexon linking proteins IIIa are shed concomitant with virion acidification in the endosome. During virus assembly, seems to play a role in the serotype specificity of the packaging of viral DNA via its interaction with packaging protein 3.' .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment '[Hexon-linking protein IIIa]: Interacts with hexon proteins; this interaction tethers the peripentonal hexons to hexons situated in the facet. Interacts with the penton protein (via N-terminus). Interacts with packaging protein 3; this interaction is required to promote correct genome packaging. Interacts with hexon-linking protein VIII.' .
?annotation7 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Located on the inner side of the capsid shell. 5 copies cement the gaps between the penton base and peripenton hexons around each 5-fold axis. Present in 60 copies per virion' .
?annotation7li8 up:cellularComponent .
?annotation7li9 up:cellularComponent .
?annotation10 a up:Induction_Annotation ;
rdfs:comment 'Expressed in the late phase of the viral replicative cycle.' .
?annotation11 a up:PTM_Annotation ;
rdfs:comment 'Cleaved near the C-terminus by the viral protease during virion maturation to form the mature protein.' .
?annotation12 a up:Annotation ;
rdfs:comment 'All late proteins expressed from the major late promoter are produced by alternative splicing and alternative polyadenylation of the same gene giving rise to non-overlapping ORFs. A leader sequence is present in the N-terminus of all these mRNAs and is recognized by the viral shutoff protein to provide expression although conventional translation via ribosome scanning from the cap has been shut off in the host cell.' .
?annotation13 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the adenoviridae hexon-linking protein IIIa family.' .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Pre-hexon-linking protein IIIa' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Hexon-linking protein IIIa' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
rdf:type up:Propeptide_Annotation .
?pfsb28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Peripentonal hexon-tethering domain' .
?pfsb34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Binding to hexon-linking protein' .
?pfsb40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage; by viral protease' .
?pfsb46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb52 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphothreonine; by host' .
?pfsb58 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb64 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb70 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb76 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfs80 up:annotation ?annotation81 .
?annotation81 faldo:begin ?pfsb82 ;
faldo:end ?pfse83 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb82 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse83 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb88 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfs92 up:annotation ?annotation93 .
?annotation93 faldo:begin ?pfsb94 ;
faldo:end ?pfse95 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb94 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?pfse95 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?pfs98 up:annotation ?annotation99 .
?annotation99 faldo:begin ?pfsb100 ;
faldo:end ?pfse101 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb100 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?pfse101 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfs104 up:annotation ?annotation105 .
?annotation105 faldo:begin ?pfsb106 ;
faldo:end ?pfse107 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphotyrosine; by host' .
?pfsb106 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?pfse107 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?pfs110 up:annotation ?annotation111 .
?annotation111 faldo:begin ?pfsb112 ;
faldo:end ?pfse113 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb112 faldo:position ?thisPositionOn114 ;
rdf:type faldo:ExactPosition .
?pfse113 faldo:position ?thisPositionOn115 ;
rdf:type faldo:ExactPosition .
?pfs116 up:annotation ?annotation117 .
?annotation117 faldo:begin ?pfsb118 ;
faldo:end ?pfse119 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb118 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?pfse119 faldo:position ?thisPositionOn121 ;
rdf:type faldo:ExactPosition .
_:911550 a rdf:Statement ;
up:attribution _:911508 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:911551 a rdf:Statement ;
up:attribution _:911509 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:911552 a rdf:Statement ;
up:attribution _:911510 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:911553 a rdf:Statement ;
up:attribution _:911511 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:911554 a rdf:Statement ;
up:attribution _:911513 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart4 .
_:911555 a rdf:Statement ;
up:attribution _:911514 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:911556 a rdf:Statement ;
up:attribution _:911515 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:911557 a rdf:Statement ;
up:attribution _:911516 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:911558 a rdf:Statement ;
up:attribution _:911517 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:911559 a rdf:Statement ;
up:attribution _:911518 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:911560 a rdf:Statement ;
up:attribution _:911519 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:911561 a rdf:Statement ;
up:attribution _:911520 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:911562 a rdf:Statement ;
up:attribution _:911521 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1232 .
_:911563 a rdf:Statement ;
up:attribution _:911522 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:167 .
_:911564 a rdf:Statement ;
up:attribution _:911523 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1048 .
_:911565 a rdf:Statement ;
up:attribution _:911524 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:426 .
_:911566 a rdf:Statement ;
up:attribution _:911525 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:911567 a rdf:Statement ;
up:attribution _:911526 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:231 .
_:911568 a rdf:Statement ;
up:attribution _:911527 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:911569 a rdf:Statement ;
up:attribution _:911528 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1188 .
_:911570 a rdf:Statement ;
up:attribution _:911529 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042025 .
_:911571 a rdf:Statement ;
up:attribution _:911530 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019028 .
_:911572 a rdf:Statement ;
up:attribution _:911531 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0098021 .
_:911573 a rdf:Statement ;
up:source unirule:MF_04047 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:911574 a rdf:Statement ;
up:attribution _:911532 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:911575 a rdf:Statement ;
up:source unirule:MF_04047 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:911576 a rdf:Statement ;
up:attribution _:911533 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:911577 a rdf:Statement ;
up:source unirule:MF_04047 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:911578 a rdf:Statement ;
up:attribution _:911534 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:911579 a rdf:Statement ;
up:source unirule:MF_04047 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:911580 a rdf:Statement ;
up:attribution _:911535 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:911581 a rdf:Statement ;
up:source unirule:MF_04047 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:911582 a rdf:Statement ;
up:attribution _:911536 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:911583 a rdf:Statement ;
up:source unirule:MF_04047 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:911584 a rdf:Statement ;
up:attribution _:911537 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:911585 a rdf:Statement ;
up:source unirule:MF_04047 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:911586 a rdf:Statement ;
up:attribution _:911538 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:911587 a rdf:Statement ;
up:source unirule:MF_04047 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:911588 a rdf:Statement ;
up:attribution _:911539 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:911589 a rdf:Statement ;
up:source unirule:MF_04047 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:911590 a rdf:Statement ;
up:attribution _:911540 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:911591 a rdf:Statement ;
up:source unirule:MF_04047 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:911592 a rdf:Statement ;
up:attribution _:911541 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:911593 a rdf:Statement ;
up:source unirule:MF_04047 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:911594 a rdf:Statement ;
up:attribution _:911542 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:911595 a rdf:Statement ;
up:source unirule:MF_04047 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:911596 a rdf:Statement ;
up:attribution _:911543 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:911597 a rdf:Statement ;
up:source unirule:MF_04047 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:911598 a rdf:Statement ;
up:attribution _:911544 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:911599 a rdf:Statement ;
up:source unirule:MF_04047 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:911600 a rdf:Statement ;
up:attribution _:911545 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:911601 a rdf:Statement ;
up:source unirule:MF_04047 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:911602 a rdf:Statement ;
up:attribution _:911546 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:911603 a rdf:Statement ;
up:source unirule:MF_04047 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:911604 a rdf:Statement ;
up:attribution _:911547 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:911605 a rdf:Statement ;
up:source unirule:MF_04047 ;
rdf:subject ?pfs110 ;
rdf:predicate up:annotation ;
rdf:object ?annotation111 .
_:911606 a rdf:Statement ;
up:attribution _:911548 ;
rdf:subject ?pfs110 ;
rdf:predicate up:annotation ;
rdf:object ?annotation111 .
_:911607 a rdf:Statement ;
up:source unirule:MF_04047 ;
rdf:subject ?pfs116 ;
rdf:predicate up:annotation ;
rdf:object ?annotation117 .
_:911608 a rdf:Statement ;
up:attribution _:911549 ;
rdf:subject ?pfs116 ;
rdf:predicate up:annotation ;
rdf:object ?annotation117 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04047
#Rule MF_04047 Created by:? on:2017-02-13 Modified by:Chantal Hulo on:2025-07-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04047 .
?thisOrganism rdfs:subClassOf+ taxon:10508 .
BIND(URI(CONCAT(STR(?this), '#MF_04047a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a4')) AS ?namedpart4) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a13')) AS ?annotation13) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch126 faldo:location ?templateMotifSequenceMatchRegionP12537127 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12537129 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12537MF_04047122 .
?templateMotifSequenceMatchRegionP12537127 faldo:begin ?templateMotifSequenceMatchBeginP12537128 .
?templateMotifSequenceMatchBeginP12537128 faldo:position ?templateMotifSequenceMatchBeginPositionP12537123 ;
faldo:reference isoform:P12537-1 .
?templateMotifSequenceProfileAlignmentOperationP12537129 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
?targetMotifMatch130 faldo:location ?targetMotifMatchRegionMatch131 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04047133 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12537MF_04047124 .
?targetMotifMatchRegionMatch131 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04047132 .
?targetMotifMatchRegionMatchBeginMF_04047132 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04047125 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04047133 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn18) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((BOUND(?thisPositionOn18) && BOUND(?thisPositionOn19))) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch139 faldo:location ?templateMotifSequenceMatchRegionP12537140 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12537142 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12537MF_04047135 .
?templateMotifSequenceMatchRegionP12537140 faldo:begin ?templateMotifSequenceMatchBeginP12537141 .
?templateMotifSequenceMatchBeginP12537141 faldo:position ?templateMotifSequenceMatchBeginPositionP12537136 ;
faldo:reference isoform:P12537-1 .
?templateMotifSequenceProfileAlignmentOperationP12537142 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
?targetMotifMatch143 faldo:location ?targetMotifMatchRegionMatch144 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04047146 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12537MF_04047137 .
?targetMotifMatchRegionMatch144 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04047145 .
?targetMotifMatchRegionMatchBeginMF_04047145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04047138 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04047146 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12537MF_04047135, 1, (STRLEN(?templateMotifCigarP12537MF_04047135) - STRLEN(REPLACE(?templateMotifCigarP12537MF_04047135, CONCAT('^(?:-*[^-]){', STR(((570 - ?templateMotifSequenceMatchBeginPositionP12537136) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12537MF_04047137, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047137) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12537MF_04047137, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047137) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047137, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1147), '}'), '')))), '[^-]', ''))) AS ?step2148) .
BIND(((?step2148 + ?targetMotifMatchRegionMatchBeginPositionMF_04047138) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t149) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((BOUND(?thisPositionOn24) && BOUND(?thisPositionOn25))) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionP12537155 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12537157 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12537MF_04047150 .
?templateMotifSequenceMatchRegionP12537155 faldo:begin ?templateMotifSequenceMatchBeginP12537156 .
?templateMotifSequenceMatchBeginP12537156 faldo:position ?templateMotifSequenceMatchBeginPositionP12537151 ;
faldo:reference isoform:P12537-1 .
?templateMotifSequenceProfileAlignmentOperationP12537157 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04047161 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12537MF_04047152 .
?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04047160 .
?targetMotifMatchRegionMatchBeginMF_04047160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04047153 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04047161 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12537MF_04047150, 1, (STRLEN(?templateMotifCigarP12537MF_04047150) - STRLEN(REPLACE(?templateMotifCigarP12537MF_04047150, CONCAT('^(?:-*[^-]){', STR(((571 - ?templateMotifSequenceMatchBeginPositionP12537151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12537MF_04047152, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047152) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12537MF_04047152, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047152) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) .
BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_04047153) - 1) AS ?thisPositionOn30) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t164) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) .
FILTER ((BOUND(?thisPositionOn30) && BOUND(?thisPositionOn31))) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch169 faldo:location ?templateMotifSequenceMatchRegionP12537170 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12537172 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12537MF_04047165 .
?templateMotifSequenceMatchRegionP12537170 faldo:begin ?templateMotifSequenceMatchBeginP12537171 .
?templateMotifSequenceMatchBeginP12537171 faldo:position ?templateMotifSequenceMatchBeginPositionP12537166 ;
faldo:reference isoform:P12537-1 .
?templateMotifSequenceProfileAlignmentOperationP12537172 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
?targetMotifMatch173 faldo:location ?targetMotifMatchRegionMatch174 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04047176 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12537MF_04047167 .
?targetMotifMatchRegionMatch174 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04047175 .
?targetMotifMatchRegionMatchBeginMF_04047175 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04047168 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04047176 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn36) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12537MF_04047165, 1, (STRLEN(?templateMotifCigarP12537MF_04047165) - STRLEN(REPLACE(?templateMotifCigarP12537MF_04047165, CONCAT('^(?:-*[^-]){', STR(((106 - ?templateMotifSequenceMatchBeginPositionP12537166) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12537MF_04047167, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047167) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12537MF_04047167, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047167) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047167, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1177), '}'), '')))), '[^-]', ''))) AS ?step2178) .
BIND(((?step2178 + ?targetMotifMatchRegionMatchBeginPositionMF_04047168) - 1) AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t179) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) .
FILTER ((BOUND(?thisPositionOn36) && BOUND(?thisPositionOn37))) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch184 faldo:location ?templateMotifSequenceMatchRegionP12537185 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12537187 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12537MF_04047180 .
?templateMotifSequenceMatchRegionP12537185 faldo:begin ?templateMotifSequenceMatchBeginP12537186 .
?templateMotifSequenceMatchBeginP12537186 faldo:position ?templateMotifSequenceMatchBeginPositionP12537181 ;
faldo:reference isoform:P12537-1 .
?templateMotifSequenceProfileAlignmentOperationP12537187 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
?targetMotifMatch188 faldo:location ?targetMotifMatchRegionMatch189 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04047191 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12537MF_04047182 .
?targetMotifMatchRegionMatch189 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04047190 .
?targetMotifMatchRegionMatchBeginMF_04047190 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04047183 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04047191 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12537MF_04047180, 1, (STRLEN(?templateMotifCigarP12537MF_04047180) - STRLEN(REPLACE(?templateMotifCigarP12537MF_04047180, CONCAT('^(?:-*[^-]){', STR(((138 - ?templateMotifSequenceMatchBeginPositionP12537181) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12537MF_04047182, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047182) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12537MF_04047182, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047182) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) .
BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_04047183) - 1) AS ?thisPositionOn42) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12537MF_04047180, 1, (STRLEN(?templateMotifCigarP12537MF_04047180) - STRLEN(REPLACE(?templateMotifCigarP12537MF_04047180, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionP12537181) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12537MF_04047182, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047182) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12537MF_04047182, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047182) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047182, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1194), '}'), '')))), '[^-]', ''))) AS ?step2195) .
BIND(((?step2195 + ?targetMotifMatchRegionMatchBeginPositionMF_04047183) - 1) AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t196) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) .
FILTER ((BOUND(?thisPositionOn42) && BOUND(?thisPositionOn43))) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch201 faldo:location ?templateMotifSequenceMatchRegionP12537202 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12537204 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12537MF_04047197 .
?templateMotifSequenceMatchRegionP12537202 faldo:begin ?templateMotifSequenceMatchBeginP12537203 .
?templateMotifSequenceMatchBeginP12537203 faldo:position ?templateMotifSequenceMatchBeginPositionP12537198 ;
faldo:reference isoform:P12537-1 .
?templateMotifSequenceProfileAlignmentOperationP12537204 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
?targetMotifMatch205 faldo:location ?targetMotifMatchRegionMatch206 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04047208 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12537MF_04047199 .
?targetMotifMatchRegionMatch206 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04047207 .
?targetMotifMatchRegionMatchBeginMF_04047207 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04047200 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04047208 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12537MF_04047197, 1, (STRLEN(?templateMotifCigarP12537MF_04047197) - STRLEN(REPLACE(?templateMotifCigarP12537MF_04047197, CONCAT('^(?:-*[^-]){', STR(((570 - ?templateMotifSequenceMatchBeginPositionP12537198) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1209) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12537MF_04047199, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047199) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12537MF_04047199, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047199) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), '')))), '[^-]', ''))) AS ?step2210) .
BIND(((?step2210 + ?targetMotifMatchRegionMatchBeginPositionMF_04047200) - 1) AS ?thisPositionOn48) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12537MF_04047197, 1, (STRLEN(?templateMotifCigarP12537MF_04047197) - STRLEN(REPLACE(?templateMotifCigarP12537MF_04047197, CONCAT('^(?:-*[^-]){', STR(((571 - ?templateMotifSequenceMatchBeginPositionP12537198) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1211) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12537MF_04047199, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047199) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12537MF_04047199, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047199) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047199, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), '')))), '[^-]', ''))) AS ?step2212) .
BIND(((?step2212 + ?targetMotifMatchRegionMatchBeginPositionMF_04047200) - 1) AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t213) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse47) .
FILTER ((BOUND(?thisPositionOn48) && BOUND(?thisPositionOn49))) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch218 faldo:location ?templateMotifSequenceMatchRegionP12537219 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12537221 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12537MF_04047214 .
?templateMotifSequenceMatchRegionP12537219 faldo:begin ?templateMotifSequenceMatchBeginP12537220 .
?templateMotifSequenceMatchBeginP12537220 faldo:position ?templateMotifSequenceMatchBeginPositionP12537215 ;
faldo:reference isoform:P12537-1 .
?templateMotifSequenceProfileAlignmentOperationP12537221 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
?targetMotifMatch222 faldo:location ?targetMotifMatchRegionMatch223 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04047225 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12537MF_04047216 .
?targetMotifMatchRegionMatch223 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04047224 .
?targetMotifMatchRegionMatchBeginMF_04047224 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04047217 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04047225 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12537MF_04047214, 1, (STRLEN(?templateMotifCigarP12537MF_04047214) - STRLEN(REPLACE(?templateMotifCigarP12537MF_04047214, CONCAT('^(?:-*[^-]){', STR(((225 - ?templateMotifSequenceMatchBeginPositionP12537215) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1226) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12537MF_04047216, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047216) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12537MF_04047216, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047216) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), '')))), '[^-]', ''))) AS ?step2227) .
BIND(((?step2227 + ?targetMotifMatchRegionMatchBeginPositionMF_04047217) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs1t228) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch233 faldo:location ?templateMotifSequenceMatchRegionP12537234 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12537236 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12537MF_04047229 .
?templateMotifSequenceMatchRegionP12537234 faldo:begin ?templateMotifSequenceMatchBeginP12537235 .
?templateMotifSequenceMatchBeginP12537235 faldo:position ?templateMotifSequenceMatchBeginPositionP12537230 ;
faldo:reference isoform:P12537-1 .
?templateMotifSequenceProfileAlignmentOperationP12537236 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
?targetMotifMatch237 faldo:location ?targetMotifMatchRegionMatch238 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04047240 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12537MF_04047231 .
?targetMotifMatchRegionMatch238 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04047239 .
?targetMotifMatchRegionMatchBeginMF_04047239 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04047232 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04047240 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12537MF_04047229, 1, (STRLEN(?templateMotifCigarP12537MF_04047229) - STRLEN(REPLACE(?templateMotifCigarP12537MF_04047229, CONCAT('^(?:-*[^-]){', STR(((274 - ?templateMotifSequenceMatchBeginPositionP12537230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1241) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12537MF_04047231, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047231) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12537MF_04047231, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047231) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), '')))), '[^-]', ''))) AS ?step2242) .
BIND(((?step2242 + ?targetMotifMatchRegionMatchBeginPositionMF_04047232) - 1) AS ?thisPositionOn60) .
BIND(?thisPositionOn60 AS ?thisPositionOn61) .
BIND(?this AS ?pfs1t243) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse59) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn60, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch248 faldo:location ?templateMotifSequenceMatchRegionP12537249 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12537251 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12537MF_04047244 .
?templateMotifSequenceMatchRegionP12537249 faldo:begin ?templateMotifSequenceMatchBeginP12537250 .
?templateMotifSequenceMatchBeginP12537250 faldo:position ?templateMotifSequenceMatchBeginPositionP12537245 ;
faldo:reference isoform:P12537-1 .
?templateMotifSequenceProfileAlignmentOperationP12537251 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
?targetMotifMatch252 faldo:location ?targetMotifMatchRegionMatch253 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04047255 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12537MF_04047246 .
?targetMotifMatchRegionMatch253 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04047254 .
?targetMotifMatchRegionMatchBeginMF_04047254 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04047247 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04047255 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12537MF_04047244, 1, (STRLEN(?templateMotifCigarP12537MF_04047244) - STRLEN(REPLACE(?templateMotifCigarP12537MF_04047244, CONCAT('^(?:-*[^-]){', STR(((310 - ?templateMotifSequenceMatchBeginPositionP12537245) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1256) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12537MF_04047246, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047246) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12537MF_04047246, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047246) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), '')))), '[^-]', ''))) AS ?step2257) .
BIND(((?step2257 + ?targetMotifMatchRegionMatchBeginPositionMF_04047247) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t258) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse65) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch263 faldo:location ?templateMotifSequenceMatchRegionP12537264 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12537266 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12537MF_04047259 .
?templateMotifSequenceMatchRegionP12537264 faldo:begin ?templateMotifSequenceMatchBeginP12537265 .
?templateMotifSequenceMatchBeginP12537265 faldo:position ?templateMotifSequenceMatchBeginPositionP12537260 ;
faldo:reference isoform:P12537-1 .
?templateMotifSequenceProfileAlignmentOperationP12537266 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
?targetMotifMatch267 faldo:location ?targetMotifMatchRegionMatch268 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04047270 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12537MF_04047261 .
?targetMotifMatchRegionMatch268 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04047269 .
?targetMotifMatchRegionMatchBeginMF_04047269 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04047262 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04047270 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12537MF_04047259, 1, (STRLEN(?templateMotifCigarP12537MF_04047259) - STRLEN(REPLACE(?templateMotifCigarP12537MF_04047259, CONCAT('^(?:-*[^-]){', STR(((444 - ?templateMotifSequenceMatchBeginPositionP12537260) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1271) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12537MF_04047261, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047261) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12537MF_04047261, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047261) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), '')))), '[^-]', ''))) AS ?step2272) .
BIND(((?step2272 + ?targetMotifMatchRegionMatchBeginPositionMF_04047262) - 1) AS ?thisPositionOn72) .
BIND(?thisPositionOn72 AS ?thisPositionOn73) .
BIND(?this AS ?pfs1t273) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn72, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch278 faldo:location ?templateMotifSequenceMatchRegionP12537279 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12537281 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12537MF_04047274 .
?templateMotifSequenceMatchRegionP12537279 faldo:begin ?templateMotifSequenceMatchBeginP12537280 .
?templateMotifSequenceMatchBeginP12537280 faldo:position ?templateMotifSequenceMatchBeginPositionP12537275 ;
faldo:reference isoform:P12537-1 .
?templateMotifSequenceProfileAlignmentOperationP12537281 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
?targetMotifMatch282 faldo:location ?targetMotifMatchRegionMatch283 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04047285 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12537MF_04047276 .
?targetMotifMatchRegionMatch283 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04047284 .
?targetMotifMatchRegionMatchBeginMF_04047284 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04047277 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04047285 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12537MF_04047274, 1, (STRLEN(?templateMotifCigarP12537MF_04047274) - STRLEN(REPLACE(?templateMotifCigarP12537MF_04047274, CONCAT('^(?:-*[^-]){', STR(((449 - ?templateMotifSequenceMatchBeginPositionP12537275) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1286) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12537MF_04047276, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047276) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1286), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12537MF_04047276, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047276) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1286), '}'), '')))), '[^-]', ''))) AS ?step2287) .
BIND(((?step2287 + ?targetMotifMatchRegionMatchBeginPositionMF_04047277) - 1) AS ?thisPositionOn78) .
BIND(?thisPositionOn78 AS ?thisPositionOn79) .
BIND(?this AS ?pfs1t288) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse77) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn78, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch293 faldo:location ?templateMotifSequenceMatchRegionP12537294 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12537296 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12537MF_04047289 .
?templateMotifSequenceMatchRegionP12537294 faldo:begin ?templateMotifSequenceMatchBeginP12537295 .
?templateMotifSequenceMatchBeginP12537295 faldo:position ?templateMotifSequenceMatchBeginPositionP12537290 ;
faldo:reference isoform:P12537-1 .
?templateMotifSequenceProfileAlignmentOperationP12537296 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
?targetMotifMatch297 faldo:location ?targetMotifMatchRegionMatch298 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04047300 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12537MF_04047291 .
?targetMotifMatchRegionMatch298 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04047299 .
?targetMotifMatchRegionMatchBeginMF_04047299 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04047292 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04047300 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12537MF_04047289, 1, (STRLEN(?templateMotifCigarP12537MF_04047289) - STRLEN(REPLACE(?templateMotifCigarP12537MF_04047289, CONCAT('^(?:-*[^-]){', STR(((450 - ?templateMotifSequenceMatchBeginPositionP12537290) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1301) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12537MF_04047291, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047291) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1301), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12537MF_04047291, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047291) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1301), '}'), '')))), '[^-]', ''))) AS ?step2302) .
BIND(((?step2302 + ?targetMotifMatchRegionMatchBeginPositionMF_04047292) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs1t303) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse83) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a81')) AS ?annotation81) .
BIND(?this AS ?pfs80) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch308 faldo:location ?templateMotifSequenceMatchRegionP12537309 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12537311 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12537MF_04047304 .
?templateMotifSequenceMatchRegionP12537309 faldo:begin ?templateMotifSequenceMatchBeginP12537310 .
?templateMotifSequenceMatchBeginP12537310 faldo:position ?templateMotifSequenceMatchBeginPositionP12537305 ;
faldo:reference isoform:P12537-1 .
?templateMotifSequenceProfileAlignmentOperationP12537311 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
?targetMotifMatch312 faldo:location ?targetMotifMatchRegionMatch313 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04047315 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12537MF_04047306 .
?targetMotifMatchRegionMatch313 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04047314 .
?targetMotifMatchRegionMatchBeginMF_04047314 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04047307 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04047315 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12537MF_04047304, 1, (STRLEN(?templateMotifCigarP12537MF_04047304) - STRLEN(REPLACE(?templateMotifCigarP12537MF_04047304, CONCAT('^(?:-*[^-]){', STR(((452 - ?templateMotifSequenceMatchBeginPositionP12537305) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1316) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12537MF_04047306, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047306) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047306, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1316), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12537MF_04047306, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047306) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047306, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1316), '}'), '')))), '[^-]', ''))) AS ?step2317) .
BIND(((?step2317 + ?targetMotifMatchRegionMatchBeginPositionMF_04047307) - 1) AS ?thisPositionOn90) .
BIND(?thisPositionOn90 AS ?thisPositionOn91) .
BIND(?this AS ?pfs1t318) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfse89) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn90, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch323 faldo:location ?templateMotifSequenceMatchRegionP12537324 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12537326 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12537MF_04047319 .
?templateMotifSequenceMatchRegionP12537324 faldo:begin ?templateMotifSequenceMatchBeginP12537325 .
?templateMotifSequenceMatchBeginP12537325 faldo:position ?templateMotifSequenceMatchBeginPositionP12537320 ;
faldo:reference isoform:P12537-1 .
?templateMotifSequenceProfileAlignmentOperationP12537326 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
?targetMotifMatch327 faldo:location ?targetMotifMatchRegionMatch328 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04047330 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12537MF_04047321 .
?targetMotifMatchRegionMatch328 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04047329 .
?targetMotifMatchRegionMatchBeginMF_04047329 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04047322 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04047330 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12537MF_04047319, 1, (STRLEN(?templateMotifCigarP12537MF_04047319) - STRLEN(REPLACE(?templateMotifCigarP12537MF_04047319, CONCAT('^(?:-*[^-]){', STR(((469 - ?templateMotifSequenceMatchBeginPositionP12537320) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1331) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12537MF_04047321, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047321) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1331), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12537MF_04047321, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047321) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047321, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1331), '}'), '')))), '[^-]', ''))) AS ?step2332) .
BIND(((?step2332 + ?targetMotifMatchRegionMatchBeginPositionMF_04047322) - 1) AS ?thisPositionOn96) .
BIND(?thisPositionOn96 AS ?thisPositionOn97) .
BIND(?this AS ?pfs1t333) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse95) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn96, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a93')) AS ?annotation93) .
BIND(?this AS ?pfs92) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch338 faldo:location ?templateMotifSequenceMatchRegionP12537339 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12537341 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12537MF_04047334 .
?templateMotifSequenceMatchRegionP12537339 faldo:begin ?templateMotifSequenceMatchBeginP12537340 .
?templateMotifSequenceMatchBeginP12537340 faldo:position ?templateMotifSequenceMatchBeginPositionP12537335 ;
faldo:reference isoform:P12537-1 .
?templateMotifSequenceProfileAlignmentOperationP12537341 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
?targetMotifMatch342 faldo:location ?targetMotifMatchRegionMatch343 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04047345 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12537MF_04047336 .
?targetMotifMatchRegionMatch343 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04047344 .
?targetMotifMatchRegionMatchBeginMF_04047344 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04047337 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04047345 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12537MF_04047334, 1, (STRLEN(?templateMotifCigarP12537MF_04047334) - STRLEN(REPLACE(?templateMotifCigarP12537MF_04047334, CONCAT('^(?:-*[^-]){', STR(((473 - ?templateMotifSequenceMatchBeginPositionP12537335) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1346) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12537MF_04047336, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047336) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047336, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1346), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12537MF_04047336, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047336) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047336, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1346), '}'), '')))), '[^-]', ''))) AS ?step2347) .
BIND(((?step2347 + ?targetMotifMatchRegionMatchBeginPositionMF_04047337) - 1) AS ?thisPositionOn102) .
BIND(?thisPositionOn102 AS ?thisPositionOn103) .
BIND(?this AS ?pfs1t348) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse101) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn102, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a99')) AS ?annotation99) .
BIND(?this AS ?pfs98) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch353 faldo:location ?templateMotifSequenceMatchRegionP12537354 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12537356 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12537MF_04047349 .
?templateMotifSequenceMatchRegionP12537354 faldo:begin ?templateMotifSequenceMatchBeginP12537355 .
?templateMotifSequenceMatchBeginP12537355 faldo:position ?templateMotifSequenceMatchBeginPositionP12537350 ;
faldo:reference isoform:P12537-1 .
?templateMotifSequenceProfileAlignmentOperationP12537356 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
?targetMotifMatch357 faldo:location ?targetMotifMatchRegionMatch358 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04047360 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12537MF_04047351 .
?targetMotifMatchRegionMatch358 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04047359 .
?targetMotifMatchRegionMatchBeginMF_04047359 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04047352 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04047360 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12537MF_04047349, 1, (STRLEN(?templateMotifCigarP12537MF_04047349) - STRLEN(REPLACE(?templateMotifCigarP12537MF_04047349, CONCAT('^(?:-*[^-]){', STR(((490 - ?templateMotifSequenceMatchBeginPositionP12537350) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1361) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12537MF_04047351, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047351) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047351, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1361), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12537MF_04047351, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047351) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047351, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1361), '}'), '')))), '[^-]', ''))) AS ?step2362) .
BIND(((?step2362 + ?targetMotifMatchRegionMatchBeginPositionMF_04047352) - 1) AS ?thisPositionOn108) .
BIND(?thisPositionOn108 AS ?thisPositionOn109) .
BIND(?this AS ?pfs1t363) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfsb106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfse107) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn108, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a105')) AS ?annotation105) .
BIND(?this AS ?pfs104) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch368 faldo:location ?templateMotifSequenceMatchRegionP12537369 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12537371 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12537MF_04047364 .
?templateMotifSequenceMatchRegionP12537369 faldo:begin ?templateMotifSequenceMatchBeginP12537370 .
?templateMotifSequenceMatchBeginP12537370 faldo:position ?templateMotifSequenceMatchBeginPositionP12537365 ;
faldo:reference isoform:P12537-1 .
?templateMotifSequenceProfileAlignmentOperationP12537371 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
?targetMotifMatch372 faldo:location ?targetMotifMatchRegionMatch373 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04047375 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12537MF_04047366 .
?targetMotifMatchRegionMatch373 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04047374 .
?targetMotifMatchRegionMatchBeginMF_04047374 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04047367 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04047375 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12537MF_04047364, 1, (STRLEN(?templateMotifCigarP12537MF_04047364) - STRLEN(REPLACE(?templateMotifCigarP12537MF_04047364, CONCAT('^(?:-*[^-]){', STR(((494 - ?templateMotifSequenceMatchBeginPositionP12537365) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1376) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12537MF_04047366, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047366) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047366, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1376), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12537MF_04047366, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047366) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047366, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1376), '}'), '')))), '[^-]', ''))) AS ?step2377) .
BIND(((?step2377 + ?targetMotifMatchRegionMatchBeginPositionMF_04047367) - 1) AS ?thisPositionOn114) .
BIND(?thisPositionOn114 AS ?thisPositionOn115) .
BIND(?this AS ?pfs1t378) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfsb112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfse113) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn114, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a111')) AS ?annotation111) .
BIND(?this AS ?pfs110) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch383 faldo:location ?templateMotifSequenceMatchRegionP12537384 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12537386 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12537MF_04047379 .
?templateMotifSequenceMatchRegionP12537384 faldo:begin ?templateMotifSequenceMatchBeginP12537385 .
?templateMotifSequenceMatchBeginP12537385 faldo:position ?templateMotifSequenceMatchBeginPositionP12537380 ;
faldo:reference isoform:P12537-1 .
?templateMotifSequenceProfileAlignmentOperationP12537386 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
?targetMotifMatch387 faldo:location ?targetMotifMatchRegionMatch388 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04047390 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12537MF_04047381 .
?targetMotifMatchRegionMatch388 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04047389 .
?targetMotifMatchRegionMatchBeginMF_04047389 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04047382 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04047390 edam:has_input signature:MF_04047 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12537MF_04047379, 1, (STRLEN(?templateMotifCigarP12537MF_04047379) - STRLEN(REPLACE(?templateMotifCigarP12537MF_04047379, CONCAT('^(?:-*[^-]){', STR(((515 - ?templateMotifSequenceMatchBeginPositionP12537380) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1391) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12537MF_04047381, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047381) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047381, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1391), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12537MF_04047381, 1, (STRLEN(?targetMotifMatchCigarP12537MF_04047381) - STRLEN(REPLACE(?targetMotifMatchCigarP12537MF_04047381, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1391), '}'), '')))), '[^-]', ''))) AS ?step2392) .
BIND(((?step2392 + ?targetMotifMatchRegionMatchBeginPositionMF_04047382) - 1) AS ?thisPositionOn120) .
BIND(?thisPositionOn120 AS ?thisPositionOn121) .
BIND(?this AS ?pfs1t393) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfsb118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfse119) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn120, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_04047a117')) AS ?annotation117) .
BIND(?this AS ?pfs116) .
}
}
"xsd:string |
