| http://purl.uniprot.org/unirules/MF_04098#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:950202 up:source unirule:MF_04098 .
_:950203 up:source unirule:MF_04098 .
_:950204 up:source unirule:MF_04098 .
_:950205 up:source unirule:MF_04098 .
_:950206 up:fullName 'Spike protein S1' ;
rdf:type up:Structured_Name .
_:950207 up:source unirule:MF_04098 .
_:950208 up:fullName 'Spike protein S2' ;
rdf:type up:Structured_Name .
_:950209 up:source unirule:MF_04098 .
_:950210 up:fullName "Spike protein S2'" ;
rdf:type up:Structured_Name .
_:950211 up:source unirule:MF_04098 .
_:950212 up:source unirule:MF_04098 .
_:950213 up:source unirule:MF_04098 .
_:950214 up:source unirule:MF_04098 .
_:950215 up:source unirule:MF_04098 .
_:950216 up:source unirule:MF_04098 .
_:950217 up:source unirule:MF_04098 .
_:950218 up:source unirule:MF_04098 .
_:950219 up:source unirule:MF_04098 .
_:950220 up:source unirule:MF_04098 .
_:950221 up:source unirule:MF_04098 .
_:950222 up:source unirule:MF_04098 .
_:950223 up:source unirule:MF_04098 .
_:950224 up:source unirule:MF_04098 .
_:950225 up:source unirule:MF_04098 .
_:950226 up:source unirule:MF_04098 .
_:950227 up:source unirule:MF_04098 .
_:950228 up:source unirule:MF_04098 .
_:950229 up:source unirule:MF_04098 .
_:950230 up:source unirule:MF_04098 .
_:950231 up:source unirule:MF_04098 .
_:950232 up:source unirule:MF_04098 .
_:950233 up:source unirule:MF_04098 .
_:950234 up:source unirule:MF_04098 .
_:950235 up:source unirule:MF_04098 .
_:950236 up:source unirule:MF_04098 .
_:950237 up:source unirule:MF_04098 .
_:950238 up:source unirule:MF_04098 .
_:950239 up:source unirule:MF_04098 .
_:950240 up:source unirule:MF_04098 .
_:950241 up:source unirule:MF_04098 .
_:950242 up:source unirule:MF_04098 .
_:950243 up:source unirule:MF_04098 .
_:950244 up:source unirule:MF_04098 .
_:950245 up:source unirule:MF_04098 .
_:950246 up:source unirule:MF_04098 .
_:950247 up:source unirule:MF_04098 .
_:950248 up:source unirule:MF_04098 .
_:950249 up:source unirule:MF_04098 .
_:950250 up:source unirule:MF_04098 .
_:950251 up:source unirule:MF_04098 .
_:950252 up:source unirule:MF_04098 .
_:950253 up:source unirule:MF_04098 .
_:950254 up:source unirule:MF_04098 .
_:950255 up:source unirule:MF_04098 .
_:950256 up:source unirule:MF_04098 .
_:950257 up:source unirule:MF_04098 .
_:950258 up:source unirule:MF_04098 .
_:950259 up:source unirule:MF_04098 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation11 ,
?annotation14 ,
?annotation17 ,
?annotation18 ;
up:classifiedWith GO:0016020 ,
GO:0019031 ,
GO:0019064 ,
GO:0039654 ,
GO:0044173 ,
GO:0046813 ,
GO:0055036 ,
GO:0075509 ,
keyword:1043 ,
keyword:1133 ,
keyword:1160 ,
keyword:1161 ,
keyword:1162 ,
keyword:1164 ,
keyword:1168 ,
keyword:1170 ,
keyword:165 ,
keyword:175 ,
keyword:261 ,
keyword:325 ,
keyword:472 ,
keyword:732 ,
keyword:812 ,
keyword:843 ,
keyword:945 ,
keyword:946 ;
up:component ?namedpart3 ,
?namedpart4 ,
?namedpart5 ;
up:precursor "true"^^xsd:boolean ;
up:recommendedName ?name0 .
?name0 up:fullName 'Spike glycoprotein' ;
up:shortName 'S glycoprotein' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'E2' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Peplomer protein' ;
rdf:type up:Structured_Name .
?namedpart3 up:recommendedName _:950206 .
?namedpart4 up:recommendedName _:950208 .
?namedpart5 up:recommendedName _:950210 .
?gene6 skos:prefLabel 'S' .
?annotation7 a up:Function_Annotation ;
rdfs:comment 'Spike protein S1: attaches the virion to the host cell membrane by interacting with sialic acids, initiating the infection.' .
?annotation8 a up:Function_Annotation ;
rdfs:comment 'Spike protein S2: mediates fusion of the virion and cellular membranes by acting as a class I viral fusion protein. Under the current model, the protein has at least 3 conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and target cell membrane fusion, the coiled coil regions (heptad repeats) assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes.' .
?annotation9 a up:Function_Annotation ;
rdfs:comment "Spike protein S2': Acts as a viral fusion peptide after S2 cleavage occurring upon virus endocytosis." .
?annotation10 a up:Subunit_Annotation ;
rdfs:comment 'Homotrimer; each monomer consists of a S1 and a S2 subunit. The resulting peplomers protrude from the virus surface as spikes.' .
?annotation11 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Accumulates in the endoplasmic reticulum-Golgi intermediate compartment, where it participates in virus particle assembly. Some S oligomers may be transported to the plasma membrane, where they may mediate cell-cell fusion' .
?annotation11li12 up:cellularComponent .
?annotation11li13 up:cellularComponent .
?annotation14 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Accumulates in the endoplasmic reticulum-Golgi intermediate compartment, where it participates in virus particle assembly. Some S oligomers may be transported to the plasma membrane, where they may mediate cell-cell fusion. S1 is not anchored to the viral envelope, but associates with the extravirion surface through its binding to S2' .
?annotation14li15 up:cellularComponent .
?annotation14li16 up:cellularComponent .
?annotation17 a up:PTM_Annotation ;
rdfs:comment 'Specific enzymatic cleavages in vivo yield mature proteins. The precursor is processed into S1 and S2 by host cell furin or furin-like protease to yield the mature S1 and S2 proteins. The cleavage site between S1 and S2 requires the optimal sequence [KR]-X-[KR]-R. Additionally, a second cleavage leads to the release of a fusion peptide after viral attachment to host cell receptor.' .
?annotation18 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the gammacoronaviruses spike protein family.' .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Di-lysine motif' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
rdf:type up:Signal_Peptide_Annotation .
?pfsb28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Spike protein S1' .
?pfsb34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Spike protein S2' .
?pfsb40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
rdf:type up:Chain_Annotation ;
rdfs:comment "Spike protein S2'" .
?pfsb46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Extracellular' .
?pfsb52 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfs56 up:annotation ?annotation57 .
?annotation57 faldo:begin ?pfsb58 ;
faldo:end ?pfse59 ;
rdf:type up:Transmembrane_Annotation ;
rdfs:comment 'Helical' .
?pfsb58 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?pfse59 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfs62 up:annotation ?annotation63 .
?annotation63 faldo:begin ?pfsb64 ;
faldo:end ?pfse65 ;
rdf:type up:Topological_Domain_Annotation ;
rdfs:comment 'Cytoplasmic' .
?pfsb64 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse65 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
rdf:type up:Coiled_Coil_Annotation .
?pfsb70 faldo:position ?thisPositionOn72 ;
rdf:type faldo:ExactPosition .
?pfse71 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
?pfs74 up:annotation ?annotation75 .
?annotation75 faldo:begin ?pfsb76 ;
faldo:end ?pfse77 ;
rdf:type up:Coiled_Coil_Annotation .
?pfsb76 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?pfse77 faldo:position ?thisPositionOn79 ;
rdf:type faldo:ExactPosition .
?pfs80 up:annotation ?annotation81 .
?annotation81 faldo:begin ?pfsb82 ;
faldo:end ?pfse83 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage; by host furin' .
?pfsb82 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse83 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage; by host furin' .
?pfsb88 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?sam92 up:classifiedWith keyword:175 .
?coiledCoil93 faldo:begin ?coiledCoilb94 ;
faldo:end ?coiledCoile95 .
?coiledCoilb94 faldo:position ?coiledCoilbp96 .
?coiledCoile95 faldo:position ?coiledCoilep97 .
?keyword98 up:range ?coiledCoil93 .
_:950260 a rdf:Statement ;
up:attribution _:950202 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:950261 a rdf:Statement ;
up:attribution _:950203 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:950262 a rdf:Statement ;
up:attribution _:950204 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:950263 a rdf:Statement ;
up:attribution _:950205 ;
rdf:subject ?this ;
rdf:predicate up:precursor ;
rdf:object "true"^^xsd:boolean .
_:950264 a rdf:Statement ;
up:attribution _:950207 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart3 .
_:950265 a rdf:Statement ;
up:attribution _:950209 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart4 .
_:950266 a rdf:Statement ;
up:attribution _:950211 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart5 .
_:950267 a rdf:Statement ;
up:attribution _:950212 ;
rdf:subject ?gene6 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene6 .
_:950268 a rdf:Statement ;
up:attribution _:950213 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:950269 a rdf:Statement ;
up:attribution _:950214 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:950270 a rdf:Statement ;
up:attribution _:950215 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:950271 a rdf:Statement ;
up:attribution _:950216 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:950272 a rdf:Statement ;
up:attribution _:950217 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:950273 a rdf:Statement ;
up:attribution _:950218 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:950274 a rdf:Statement ;
up:attribution _:950219 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:950275 a rdf:Statement ;
up:attribution _:950220 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:950276 a rdf:Statement ;
up:attribution _:950221 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:165 .
_:950277 a rdf:Statement ;
up:attribution _:950222 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:175 .
_:950278 a rdf:Statement ;
up:attribution _:950223 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1170 .
_:950279 a rdf:Statement ;
up:attribution _:950224 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1168 .
_:950280 a rdf:Statement ;
up:attribution _:950225 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:325 .
_:950281 a rdf:Statement ;
up:attribution _:950226 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1043 .
_:950282 a rdf:Statement ;
up:attribution _:950227 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:945 .
_:950283 a rdf:Statement ;
up:attribution _:950228 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:950284 a rdf:Statement ;
up:attribution _:950229 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
_:950285 a rdf:Statement ;
up:attribution _:950230 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:950286 a rdf:Statement ;
up:attribution _:950231 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:950287 a rdf:Statement ;
up:attribution _:950232 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1161 .
_:950288 a rdf:Statement ;
up:attribution _:950233 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:261 .
_:950289 a rdf:Statement ;
up:attribution _:950234 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1162 .
_:950290 a rdf:Statement ;
up:attribution _:950235 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:950291 a rdf:Statement ;
up:attribution _:950236 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:843 .
_:950292 a rdf:Statement ;
up:attribution _:950237 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1164 .
_:950293 a rdf:Statement ;
up:attribution _:950238 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1160 .
_:950294 a rdf:Statement ;
up:attribution _:950239 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044173 .
_:950295 a rdf:Statement ;
up:attribution _:950240 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016020 .
_:950296 a rdf:Statement ;
up:attribution _:950241 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019031 .
_:950297 a rdf:Statement ;
up:attribution _:950242 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0055036 .
_:950298 a rdf:Statement ;
up:attribution _:950243 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0075509 .
_:950299 a rdf:Statement ;
up:attribution _:950244 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039654 .
_:950300 a rdf:Statement ;
up:attribution _:950245 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019064 .
_:950301 a rdf:Statement ;
up:attribution _:950246 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046813 .
_:950302 a rdf:Statement ;
up:source unirule:MF_04098 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:950303 a rdf:Statement ;
up:attribution _:950247 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:950304 a rdf:Statement ;
up:source unirule:MF_04098 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:950305 a rdf:Statement ;
up:attribution _:950248 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:950306 a rdf:Statement ;
up:source unirule:MF_04098 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:950307 a rdf:Statement ;
up:attribution _:950249 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:950308 a rdf:Statement ;
up:source unirule:MF_04098 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:950309 a rdf:Statement ;
up:attribution _:950250 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:950310 a rdf:Statement ;
up:source unirule:MF_04098 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:950311 a rdf:Statement ;
up:attribution _:950251 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:950312 a rdf:Statement ;
up:source unirule:MF_04098 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:950313 a rdf:Statement ;
up:attribution _:950252 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:950314 a rdf:Statement ;
up:source unirule:MF_04098 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:950315 a rdf:Statement ;
up:attribution _:950253 ;
rdf:subject ?pfs56 ;
rdf:predicate up:annotation ;
rdf:object ?annotation57 .
_:950316 a rdf:Statement ;
up:source unirule:MF_04098 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:950317 a rdf:Statement ;
up:attribution _:950254 ;
rdf:subject ?pfs62 ;
rdf:predicate up:annotation ;
rdf:object ?annotation63 .
_:950318 a rdf:Statement ;
up:source unirule:MF_04098 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:950319 a rdf:Statement ;
up:attribution _:950255 ;
rdf:subject ?pfs68 ;
rdf:predicate up:annotation ;
rdf:object ?annotation69 .
_:950320 a rdf:Statement ;
up:source unirule:MF_04098 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:950321 a rdf:Statement ;
up:attribution _:950256 ;
rdf:subject ?pfs74 ;
rdf:predicate up:annotation ;
rdf:object ?annotation75 .
_:950322 a rdf:Statement ;
up:source unirule:MF_04098 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:950323 a rdf:Statement ;
up:attribution _:950257 ;
rdf:subject ?pfs80 ;
rdf:predicate up:annotation ;
rdf:object ?annotation81 .
_:950324 a rdf:Statement ;
up:source unirule:MF_04098 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:950325 a rdf:Statement ;
up:attribution _:950258 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:950326 a rdf:Statement ;
up:attribution _:950259 ;
rdf:subject ?sam92 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:175 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04098
#Rule MF_04098 Created by:? on:2018-03-26 Modified by:Edouard de Castro on:2022-09-29
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04098 .
?thisOrganism rdfs:subClassOf+ taxon:694013 .
BIND(URI(CONCAT(STR(?this), '#MF_04098a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a3')) AS ?namedpart3) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a4')) AS ?namedpart4) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a5')) AS ?namedpart5) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a14')) AS ?annotation14) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a17')) AS ?annotation17) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a18')) AS ?annotation18) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch103 faldo:location ?templateMotifSequenceMatchRegionP11223104 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11223106 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11223MF_0409899 .
?templateMotifSequenceMatchRegionP11223104 faldo:begin ?templateMotifSequenceMatchBeginP11223105 .
?templateMotifSequenceMatchBeginP11223105 faldo:position ?templateMotifSequenceMatchBeginPositionP11223100 ;
faldo:reference isoform:P11223-1 .
?templateMotifSequenceProfileAlignmentOperationP11223106 edam:has_input signature:MF_04098 ;
rdf:type edam:operation_0300 .
?targetMotifMatch107 faldo:location ?targetMotifMatchRegionMatch108 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04098110 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11223MF_04098101 .
?targetMotifMatchRegionMatch108 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04098109 .
?targetMotifMatchRegionMatchBeginMF_04098109 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04098102 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04098110 edam:has_input signature:MF_04098 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagMotif) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_0409899, 1, (STRLEN(?templateMotifCigarP11223MF_0409899) - STRLEN(REPLACE(?templateMotifCigarP11223MF_0409899, CONCAT('^(?:-*[^-]){', STR(((1159 - ?templateMotifSequenceMatchBeginPositionP11223100) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098101, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098101) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098101, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098101) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) .
BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_04098102) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_0409899, 1, (STRLEN(?templateMotifCigarP11223MF_0409899) - STRLEN(REPLACE(?templateMotifCigarP11223MF_0409899, CONCAT('^(?:-*[^-]){', STR(((1162 - ?templateMotifSequenceMatchBeginPositionP11223100) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098101, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098101) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098101, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098101) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) .
BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_04098102) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t115) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER (REGEX('KK[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn24, (?thisPositionOn25 - ?thisPositionOn24)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch120 faldo:location ?templateMotifSequenceMatchRegionP11223121 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11223123 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11223MF_04098116 .
?templateMotifSequenceMatchRegionP11223121 faldo:begin ?templateMotifSequenceMatchBeginP11223122 .
?templateMotifSequenceMatchBeginP11223122 faldo:position ?templateMotifSequenceMatchBeginPositionP11223117 ;
faldo:reference isoform:P11223-1 .
?templateMotifSequenceProfileAlignmentOperationP11223123 edam:has_input signature:MF_04098 ;
rdf:type edam:operation_0300 .
?targetMotifMatch124 faldo:location ?targetMotifMatchRegionMatch125 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04098127 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11223MF_04098118 .
?targetMotifMatchRegionMatch125 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04098126 .
?targetMotifMatchRegionMatchBeginMF_04098126 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04098119 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04098127 edam:has_input signature:MF_04098 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn30) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098116, 1, (STRLEN(?templateMotifCigarP11223MF_04098116) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098116, CONCAT('^(?:-*[^-]){', STR(((18 - ?templateMotifSequenceMatchBeginPositionP11223117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098118, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098118) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098118, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098118) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) .
BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_04098119) - 1) AS ?thisPositionOn31) .
BIND(?this AS ?pfs2t130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) .
FILTER ((BOUND(?thisPositionOn30) && BOUND(?thisPositionOn31))) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch135 faldo:location ?templateMotifSequenceMatchRegionP11223136 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11223138 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11223MF_04098131 .
?templateMotifSequenceMatchRegionP11223136 faldo:begin ?templateMotifSequenceMatchBeginP11223137 .
?templateMotifSequenceMatchBeginP11223137 faldo:position ?templateMotifSequenceMatchBeginPositionP11223132 ;
faldo:reference isoform:P11223-1 .
?templateMotifSequenceProfileAlignmentOperationP11223138 edam:has_input signature:MF_04098 ;
rdf:type edam:operation_0300 .
?targetMotifMatch139 faldo:location ?targetMotifMatchRegionMatch140 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04098142 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11223MF_04098133 .
?targetMotifMatchRegionMatch140 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04098141 .
?targetMotifMatchRegionMatchBeginMF_04098141 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04098134 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04098142 edam:has_input signature:MF_04098 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098131, 1, (STRLEN(?templateMotifCigarP11223MF_04098131) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098131, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionP11223132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098133, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098133) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098133, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098133) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) .
BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_04098134) - 1) AS ?thisPositionOn36) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098131, 1, (STRLEN(?templateMotifCigarP11223MF_04098131) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098131, CONCAT('^(?:-*[^-]){', STR(((537 - ?templateMotifSequenceMatchBeginPositionP11223132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098133, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098133) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098133, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098133) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), '')))), '[^-]', ''))) AS ?step2146) .
BIND(((?step2146 + ?targetMotifMatchRegionMatchBeginPositionMF_04098134) - 1) AS ?thisPositionOn37) .
BIND(?this AS ?pfs2t147) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) .
FILTER ((BOUND(?thisPositionOn36) && BOUND(?thisPositionOn37))) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch152 faldo:location ?templateMotifSequenceMatchRegionP11223153 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11223155 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11223MF_04098148 .
?templateMotifSequenceMatchRegionP11223153 faldo:begin ?templateMotifSequenceMatchBeginP11223154 .
?templateMotifSequenceMatchBeginP11223154 faldo:position ?templateMotifSequenceMatchBeginPositionP11223149 ;
faldo:reference isoform:P11223-1 .
?templateMotifSequenceProfileAlignmentOperationP11223155 edam:has_input signature:MF_04098 ;
rdf:type edam:operation_0300 .
?targetMotifMatch156 faldo:location ?targetMotifMatchRegionMatch157 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04098159 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11223MF_04098150 .
?targetMotifMatchRegionMatch157 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04098158 .
?targetMotifMatchRegionMatchBeginMF_04098158 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04098151 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04098159 edam:has_input signature:MF_04098 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098148, 1, (STRLEN(?templateMotifCigarP11223MF_04098148) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098148, CONCAT('^(?:-*[^-]){', STR(((538 - ?templateMotifSequenceMatchBeginPositionP11223149) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098150, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098150) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098150, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098150) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), '')))), '[^-]', ''))) AS ?step2161) .
BIND(((?step2161 + ?targetMotifMatchRegionMatchBeginPositionMF_04098151) - 1) AS ?thisPositionOn42) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn43) .
BIND(?this AS ?pfs2t162) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) .
FILTER ((BOUND(?thisPositionOn42) && BOUND(?thisPositionOn43))) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch167 faldo:location ?templateMotifSequenceMatchRegionP11223168 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11223170 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11223MF_04098163 .
?templateMotifSequenceMatchRegionP11223168 faldo:begin ?templateMotifSequenceMatchBeginP11223169 .
?templateMotifSequenceMatchBeginP11223169 faldo:position ?templateMotifSequenceMatchBeginPositionP11223164 ;
faldo:reference isoform:P11223-1 .
?templateMotifSequenceProfileAlignmentOperationP11223170 edam:has_input signature:MF_04098 ;
rdf:type edam:operation_0300 .
?targetMotifMatch171 faldo:location ?targetMotifMatchRegionMatch172 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04098174 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11223MF_04098165 .
?targetMotifMatchRegionMatch172 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04098173 .
?targetMotifMatchRegionMatchBeginMF_04098173 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04098166 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04098174 edam:has_input signature:MF_04098 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098163, 1, (STRLEN(?templateMotifCigarP11223MF_04098163) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098163, CONCAT('^(?:-*[^-]){', STR(((691 - ?templateMotifSequenceMatchBeginPositionP11223164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098165, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098165) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098165, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098165) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) .
BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_04098166) - 1) AS ?thisPositionOn48) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn49) .
BIND(?this AS ?pfs2t177) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse47) .
FILTER ((BOUND(?thisPositionOn48) && BOUND(?thisPositionOn49))) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionP11223183 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11223185 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11223MF_04098178 .
?templateMotifSequenceMatchRegionP11223183 faldo:begin ?templateMotifSequenceMatchBeginP11223184 .
?templateMotifSequenceMatchBeginP11223184 faldo:position ?templateMotifSequenceMatchBeginPositionP11223179 ;
faldo:reference isoform:P11223-1 .
?templateMotifSequenceProfileAlignmentOperationP11223185 edam:has_input signature:MF_04098 ;
rdf:type edam:operation_0300 .
?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04098189 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11223MF_04098180 .
?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04098188 .
?targetMotifMatchRegionMatchBeginMF_04098188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04098181 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04098189 edam:has_input signature:MF_04098 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098178, 1, (STRLEN(?templateMotifCigarP11223MF_04098178) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098178, CONCAT('^(?:-*[^-]){', STR(((19 - ?templateMotifSequenceMatchBeginPositionP11223179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098180, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098180) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098180, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098180) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) .
BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_04098181) - 1) AS ?thisPositionOn54) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098178, 1, (STRLEN(?templateMotifCigarP11223MF_04098178) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098178, CONCAT('^(?:-*[^-]){', STR(((1095 - ?templateMotifSequenceMatchBeginPositionP11223179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098180, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098180) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098180, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098180) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1192), '}'), '')))), '[^-]', ''))) AS ?step2193) .
BIND(((?step2193 + ?targetMotifMatchRegionMatchBeginPositionMF_04098181) - 1) AS ?thisPositionOn55) .
BIND(?this AS ?pfs2t194) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse53) .
FILTER ((BOUND(?thisPositionOn54) && BOUND(?thisPositionOn55))) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch199 faldo:location ?templateMotifSequenceMatchRegionP11223200 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11223202 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11223MF_04098195 .
?templateMotifSequenceMatchRegionP11223200 faldo:begin ?templateMotifSequenceMatchBeginP11223201 .
?templateMotifSequenceMatchBeginP11223201 faldo:position ?templateMotifSequenceMatchBeginPositionP11223196 ;
faldo:reference isoform:P11223-1 .
?templateMotifSequenceProfileAlignmentOperationP11223202 edam:has_input signature:MF_04098 ;
rdf:type edam:operation_0300 .
?targetMotifMatch203 faldo:location ?targetMotifMatchRegionMatch204 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04098206 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11223MF_04098197 .
?targetMotifMatchRegionMatch204 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04098205 .
?targetMotifMatchRegionMatchBeginMF_04098205 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04098198 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04098206 edam:has_input signature:MF_04098 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098195, 1, (STRLEN(?templateMotifCigarP11223MF_04098195) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098195, CONCAT('^(?:-*[^-]){', STR(((1096 - ?templateMotifSequenceMatchBeginPositionP11223196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1207) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098197, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098197) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098197, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098197) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1207), '}'), '')))), '[^-]', ''))) AS ?step2208) .
BIND(((?step2208 + ?targetMotifMatchRegionMatchBeginPositionMF_04098198) - 1) AS ?thisPositionOn60) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098195, 1, (STRLEN(?templateMotifCigarP11223MF_04098195) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098195, CONCAT('^(?:-*[^-]){', STR(((1116 - ?templateMotifSequenceMatchBeginPositionP11223196) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1209) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098197, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098197) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098197, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098197) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098197, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1209), '}'), '')))), '[^-]', ''))) AS ?step2210) .
BIND(((?step2210 + ?targetMotifMatchRegionMatchBeginPositionMF_04098198) - 1) AS ?thisPositionOn61) .
BIND(?this AS ?pfs2t211) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfsb58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfse59) .
FILTER ((BOUND(?thisPositionOn60) && BOUND(?thisPositionOn61))) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a57')) AS ?annotation57) .
BIND(?this AS ?pfs56) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch216 faldo:location ?templateMotifSequenceMatchRegionP11223217 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11223219 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11223MF_04098212 .
?templateMotifSequenceMatchRegionP11223217 faldo:begin ?templateMotifSequenceMatchBeginP11223218 .
?templateMotifSequenceMatchBeginP11223218 faldo:position ?templateMotifSequenceMatchBeginPositionP11223213 ;
faldo:reference isoform:P11223-1 .
?templateMotifSequenceProfileAlignmentOperationP11223219 edam:has_input signature:MF_04098 ;
rdf:type edam:operation_0300 .
?targetMotifMatch220 faldo:location ?targetMotifMatchRegionMatch221 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04098223 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11223MF_04098214 .
?targetMotifMatchRegionMatch221 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04098222 .
?targetMotifMatchRegionMatchBeginMF_04098222 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04098215 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04098223 edam:has_input signature:MF_04098 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098212, 1, (STRLEN(?templateMotifCigarP11223MF_04098212) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098212, CONCAT('^(?:-*[^-]){', STR(((1117 - ?templateMotifSequenceMatchBeginPositionP11223213) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1224) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098214, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098214) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098214, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098214) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098214, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1224), '}'), '')))), '[^-]', ''))) AS ?step2225) .
BIND(((?step2225 + ?targetMotifMatchRegionMatchBeginPositionMF_04098215) - 1) AS ?thisPositionOn66) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn67) .
BIND(?this AS ?pfs2t226) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb64) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse65) .
FILTER ((BOUND(?thisPositionOn66) && BOUND(?thisPositionOn67))) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a63')) AS ?annotation63) .
BIND(?this AS ?pfs62) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch231 faldo:location ?templateMotifSequenceMatchRegionP11223232 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11223234 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11223MF_04098227 .
?templateMotifSequenceMatchRegionP11223232 faldo:begin ?templateMotifSequenceMatchBeginP11223233 .
?templateMotifSequenceMatchBeginP11223233 faldo:position ?templateMotifSequenceMatchBeginPositionP11223228 ;
faldo:reference isoform:P11223-1 .
?templateMotifSequenceProfileAlignmentOperationP11223234 edam:has_input signature:MF_04098 ;
rdf:type edam:operation_0300 .
?targetMotifMatch235 faldo:location ?targetMotifMatchRegionMatch236 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04098238 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11223MF_04098229 .
?targetMotifMatchRegionMatch236 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04098237 .
?targetMotifMatchRegionMatchBeginMF_04098237 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04098230 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04098238 edam:has_input signature:MF_04098 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098227, 1, (STRLEN(?templateMotifCigarP11223MF_04098227) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098227, CONCAT('^(?:-*[^-]){', STR(((822 - ?templateMotifSequenceMatchBeginPositionP11223228) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1239) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098229, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098229) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098229, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098229) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1239), '}'), '')))), '[^-]', ''))) AS ?step2240) .
BIND(((?step2240 + ?targetMotifMatchRegionMatchBeginPositionMF_04098230) - 1) AS ?thisPositionOn72) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098227, 1, (STRLEN(?templateMotifCigarP11223MF_04098227) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098227, CONCAT('^(?:-*[^-]){', STR(((866 - ?templateMotifSequenceMatchBeginPositionP11223228) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1241) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098229, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098229) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098229, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098229) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098229, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), '')))), '[^-]', ''))) AS ?step2242) .
BIND(((?step2242 + ?targetMotifMatchRegionMatchBeginPositionMF_04098230) - 1) AS ?thisPositionOn73) .
BIND(?this AS ?pfs2t243) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn72))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfse71) .
FILTER ((BOUND(?thisPositionOn72) && BOUND(?thisPositionOn73))) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch248 faldo:location ?templateMotifSequenceMatchRegionP11223249 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11223251 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11223MF_04098244 .
?templateMotifSequenceMatchRegionP11223249 faldo:begin ?templateMotifSequenceMatchBeginP11223250 .
?templateMotifSequenceMatchBeginP11223250 faldo:position ?templateMotifSequenceMatchBeginPositionP11223245 ;
faldo:reference isoform:P11223-1 .
?templateMotifSequenceProfileAlignmentOperationP11223251 edam:has_input signature:MF_04098 ;
rdf:type edam:operation_0300 .
?targetMotifMatch252 faldo:location ?targetMotifMatchRegionMatch253 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04098255 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11223MF_04098246 .
?targetMotifMatchRegionMatch253 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04098254 .
?targetMotifMatchRegionMatchBeginMF_04098254 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04098247 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04098255 edam:has_input signature:MF_04098 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098244, 1, (STRLEN(?templateMotifCigarP11223MF_04098244) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098244, CONCAT('^(?:-*[^-]){', STR(((1055 - ?templateMotifSequenceMatchBeginPositionP11223245) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1256) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098246, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098246) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098246, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098246) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), '')))), '[^-]', ''))) AS ?step2257) .
BIND(((?step2257 + ?targetMotifMatchRegionMatchBeginPositionMF_04098247) - 1) AS ?thisPositionOn78) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098244, 1, (STRLEN(?templateMotifCigarP11223MF_04098244) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098244, CONCAT('^(?:-*[^-]){', STR(((1083 - ?templateMotifSequenceMatchBeginPositionP11223245) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1258) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098246, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098246) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098246, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098246) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1258), '}'), '')))), '[^-]', ''))) AS ?step2259) .
BIND(((?step2259 + ?targetMotifMatchRegionMatchBeginPositionMF_04098247) - 1) AS ?thisPositionOn79) .
BIND(?this AS ?pfs2t260) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfsb76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn79))) AS ?pfse77) .
FILTER ((BOUND(?thisPositionOn78) && BOUND(?thisPositionOn79))) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a75')) AS ?annotation75) .
BIND(?this AS ?pfs74) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch265 faldo:location ?templateMotifSequenceMatchRegionP11223266 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11223268 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11223MF_04098261 .
?templateMotifSequenceMatchRegionP11223266 faldo:begin ?templateMotifSequenceMatchBeginP11223267 .
?templateMotifSequenceMatchBeginP11223267 faldo:position ?templateMotifSequenceMatchBeginPositionP11223262 ;
faldo:reference isoform:P11223-1 .
?templateMotifSequenceProfileAlignmentOperationP11223268 edam:has_input signature:MF_04098 ;
rdf:type edam:operation_0300 .
?targetMotifMatch269 faldo:location ?targetMotifMatchRegionMatch270 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04098272 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11223MF_04098263 .
?targetMotifMatchRegionMatch270 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04098271 .
?targetMotifMatchRegionMatchBeginMF_04098271 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04098264 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04098272 edam:has_input signature:MF_04098 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098261, 1, (STRLEN(?templateMotifCigarP11223MF_04098261) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098261, CONCAT('^(?:-*[^-]){', STR(((537 - ?templateMotifSequenceMatchBeginPositionP11223262) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1273) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098263, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098263) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1273), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098263, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098263) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1273), '}'), '')))), '[^-]', ''))) AS ?step2274) .
BIND(((?step2274 + ?targetMotifMatchRegionMatchBeginPositionMF_04098264) - 1) AS ?thisPositionOn84) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098261, 1, (STRLEN(?templateMotifCigarP11223MF_04098261) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098261, CONCAT('^(?:-*[^-]){', STR(((538 - ?templateMotifSequenceMatchBeginPositionP11223262) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1275) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098263, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098263) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098263, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098263) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), '')))), '[^-]', ''))) AS ?step2276) .
BIND(((?step2276 + ?targetMotifMatchRegionMatchBeginPositionMF_04098264) - 1) AS ?thisPositionOn85) .
BIND(?this AS ?pfs2t277) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse83) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, (?thisPositionOn85 - ?thisPositionOn84)) = 'RS')) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a81')) AS ?annotation81) .
BIND(?this AS ?pfs80) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch282 faldo:location ?templateMotifSequenceMatchRegionP11223283 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP11223285 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP11223MF_04098278 .
?templateMotifSequenceMatchRegionP11223283 faldo:begin ?templateMotifSequenceMatchBeginP11223284 .
?templateMotifSequenceMatchBeginP11223284 faldo:position ?templateMotifSequenceMatchBeginPositionP11223279 ;
faldo:reference isoform:P11223-1 .
?templateMotifSequenceProfileAlignmentOperationP11223285 edam:has_input signature:MF_04098 ;
rdf:type edam:operation_0300 .
?targetMotifMatch286 faldo:location ?targetMotifMatchRegionMatch287 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04098289 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP11223MF_04098280 .
?targetMotifMatchRegionMatch287 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04098288 .
?targetMotifMatchRegionMatchBeginMF_04098288 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04098281 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04098289 edam:has_input signature:MF_04098 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098278, 1, (STRLEN(?templateMotifCigarP11223MF_04098278) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098278, CONCAT('^(?:-*[^-]){', STR(((690 - ?templateMotifSequenceMatchBeginPositionP11223279) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1290) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098280, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098280) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1290), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098280, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098280) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1290), '}'), '')))), '[^-]', ''))) AS ?step2291) .
BIND(((?step2291 + ?targetMotifMatchRegionMatchBeginPositionMF_04098281) - 1) AS ?thisPositionOn90) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP11223MF_04098278, 1, (STRLEN(?templateMotifCigarP11223MF_04098278) - STRLEN(REPLACE(?templateMotifCigarP11223MF_04098278, CONCAT('^(?:-*[^-]){', STR(((691 - ?templateMotifSequenceMatchBeginPositionP11223279) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1292) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP11223MF_04098280, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098280) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP11223MF_04098280, 1, (STRLEN(?targetMotifMatchCigarP11223MF_04098280) - STRLEN(REPLACE(?targetMotifMatchCigarP11223MF_04098280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1292), '}'), '')))), '[^-]', ''))) AS ?step2293) .
BIND(((?step2293 + ?targetMotifMatchRegionMatchBeginPositionMF_04098281) - 1) AS ?thisPositionOn91) .
BIND(?this AS ?pfs2t294) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfse89) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn90, (?thisPositionOn91 - ?thisPositionOn90)) = 'RS')) .
BIND(URI(CONCAT(STR(?this), '#MF_04098a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag295) .
}
BIND(IF(BOUND(?tagMotif), ?caseWithTag295, ?UNBOUND_VARIABLE) AS ?case19) .
OPTIONAL {
?this up:annotation ?samcc296 ;
up:sequence ?thisSequence .
?samcc296 up:range ?samccr297 ;
rdf:type up:Coiled_Coil_Annotation .
?samccr297 faldo:begin ?samccb298 ;
faldo:end ?samcce299 .
?samccb298 faldo:position ?samccbp300 ;
faldo:reference ?thisSequence .
?samcce299 faldo:position ?samccep301 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam92) .
}
BIND(URI(CONCAT(STR(?this), '#MF_04098a98')) AS ?keyword98) .
}
"xsd:string |
