| http://purl.uniprot.org/unirules/MF_04131#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:964857 up:source unirule:MF_04131 .
_:964858 up:source unirule:MF_04131 .
_:964859 up:source unirule:MF_04131 .
_:964860 up:source unirule:MF_04131 .
_:964861 up:source unirule:MF_04131 .
_:964862 up:source unirule:MF_04131 .
_:964863 up:source unirule:MF_04131 .
_:964864 up:source unirule:MF_04131 .
_:964865 up:source unirule:MF_04131 .
_:964866 up:source unirule:MF_04131 .
_:964867 up:source unirule:MF_04131 .
_:964868 up:source unirule:MF_04131 .
_:964869 up:source unirule:MF_04131 .
_:964870 up:source unirule:MF_04131 .
_:964871 up:source unirule:MF_04131 .
_:964872 up:source unirule:MF_04131 .
_:964873 up:source unirule:MF_04131 .
_:964874 up:source unirule:MF_04131 .
_:964875 up:source unirule:MF_04131 .
_:964876 up:source unirule:MF_04131 .
_:964877 up:source unirule:MF_04131 .
_:964878 up:source unirule:MF_04131 .
_:964879 up:source unirule:MF_04131 .
_:964880 up:source unirule:MF_04131 .
_:964881 up:source unirule:MF_04131 .
_:964882 up:source unirule:MF_04131 .
_:964883 up:source unirule:MF_04131 .
_:964884 up:source unirule:MF_04131 .
_:964885 up:source unirule:MF_04131 .
_:964886 up:source unirule:MF_04131 .
_:964887 up:source unirule:MF_04131 .
_:964888 up:source unirule:MF_04131 .
_:964889 up:source unirule:MF_04131 .
_:964890 up:source unirule:MF_04131 .
_:964891 up:source unirule:MF_04131 .
_:964892 up:source unirule:MF_04131 .
_:964893 up:source unirule:MF_04131 .
_:964894 up:source unirule:MF_04131 .
_:964895 up:source unirule:MF_04131 .
_:964896 up:source unirule:MF_04131 .
_:964897 up:source unirule:MF_04131 .
_:964898 up:source unirule:MF_04131 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation3 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0039621 ,
GO:0039624 ,
GO:0044166 ,
keyword:1015 ,
keyword:1038 ,
keyword:106 ,
keyword:1146 ,
keyword:1152 ,
keyword:167 ,
keyword:325 ,
keyword:479 ,
keyword:732 ,
keyword:945 ,
keyword:946 ;
up:precursor "true"^^xsd:boolean ;
up:recommendedName ?name0 .
?name0 up:fullName 'Outer capsid glycoprotein VP7' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Calcium-binding protein that interacts with rotavirus cell receptors once the initial attachment by VP4 has been achieved. Rotavirus attachment and entry into the host cell probably involves multiple sequential contacts between the outer capsid proteins VP4 and VP7, and the cell receptors. Following entry into the host cell, low intracellular or intravesicular Ca(2+) concentration probably causes the calcium-stabilized VP7 trimers to dissociate from the virion. This step is probably necessary for the membrane-disrupting entry step and the release of VP4, which is locked onto the virion by VP7.' .
?annotation2 a up:Subunit_Annotation ;
rdfs:comment 'Homotrimer; disulfide-linked. 2 Ca(2+) ions bound at each subunit interface in the trimer hold the trimer together. Interacts with the intermediate capsid protein VP6. Interacts with the outer capsid protein VP5*.' .
?annotation3 a up:Subcellular_Location_Annotation ;
rdfs:comment 'The outer layer contains 780 copies of VP7, grouped as 260 trimers. Immature double-layered particles assembled in the cytoplasm bud across the membrane of the endoplasmic reticulum, acquiring during this process a transient lipid membrane that is modified with the ER resident viral glycoproteins NSP4 and VP7; these enveloped particles also contain VP4. As the particles move towards the interior of the ER cisternae, the transient lipid membrane and the non-structural protein NSP4 are lost, while the virus surface proteins VP4 and VP7 rearrange to form the outermost virus protein layer, yielding mature infectious triple-layered particles' .
?annotation3li4 up:cellularComponent .
?annotation3li5 up:cellularComponent .
?annotation6 a up:PTM_Annotation ;
rdfs:comment 'N-glycosylated.' .
?annotation7 a up:PTM_Annotation ;
rdfs:comment 'The N-terminus is blocked possibly by pyroglutamic acid.' .
?annotation8 a up:Annotation ;
rdfs:comment 'Some rotavirus strains are neuraminidase-sensitive and require sialic acid to attach to the cell surface. Some rotavirus strains are integrin-dependent. Some rotavirus strains depend on ganglioside for their entry into the host cell. Hsp70 also seems to be involved in the entry of some strains.' .
?annotation9 a up:Annotation ;
rdfs:comment 'In group A rotaviruses, VP7 defines the G serotype.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the rotavirus VP7 family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
rdf:type up:Signal_Peptide_Annotation .
?pfsb13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Outer capsid glycoprotein VP7' .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:29108 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:29108 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:29108 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:29108 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:29108 .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf chebi:29108 .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
up:ligand ?ligand69 ;
rdf:type up:Binding_Site_Annotation .
?pfsb67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?ligand69 rdfs:subClassOf chebi:29108 .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
up:ligand ?ligand76 ;
rdf:type up:Binding_Site_Annotation .
?pfsb74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand76 rdfs:subClassOf chebi:29108 .
?pfs79 up:annotation ?annotation80 .
?annotation80 faldo:begin ?pfsb81 ;
faldo:end ?pfse82 ;
up:ligand ?ligand83 ;
rdf:type up:Binding_Site_Annotation .
?pfsb81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?ligand83 rdfs:subClassOf chebi:29108 .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb88 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfs92 up:annotation ?annotation93 .
?annotation93 faldo:begin ?pfsb94 ;
faldo:end ?pfse95 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb94 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?pfse95 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?pfs98 up:annotation ?annotation99 .
?annotation99 faldo:begin ?pfsb100 ;
faldo:end ?pfse101 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb100 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?pfse101 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfs104 up:annotation ?annotation105 .
?annotation105 faldo:begin ?pfsb106 ;
faldo:end ?pfse107 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb106 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?pfse107 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?pfs110 up:annotation ?annotation111 .
?annotation111 faldo:begin ?pfsb112 ;
faldo:end ?pfse113 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'LVD motif; interaction with ITGA4/ITGB1 heterodimer' .
?pfsb112 faldo:position ?thisPositionOn114 ;
rdf:type faldo:ExactPosition .
?pfse113 faldo:position ?thisPositionOn115 ;
rdf:type faldo:ExactPosition .
?pfs116 up:annotation ?annotation117 .
?annotation117 faldo:begin ?pfsb118 ;
faldo:end ?pfse119 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'GPR motif; interaction with ITGAX/ITGB2' .
?pfsb118 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?pfse119 faldo:position ?thisPositionOn121 ;
rdf:type faldo:ExactPosition .
?pfs122 up:annotation ?annotation123 .
?annotation123 faldo:begin ?pfsb124 ;
faldo:end ?pfse125 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'CNP motif; interaction with ITGAV/ITGB3' .
?pfsb124 faldo:position ?thisPositionOn126 ;
rdf:type faldo:ExactPosition .
?pfse125 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
_:964899 a rdf:Statement ;
up:attribution _:964857 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:964900 a rdf:Statement ;
up:attribution _:964858 ;
rdf:subject ?this ;
rdf:predicate up:precursor ;
rdf:object "true"^^xsd:boolean .
_:964901 a rdf:Statement ;
up:attribution _:964859 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:964902 a rdf:Statement ;
up:attribution _:964860 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:964903 a rdf:Statement ;
up:attribution _:964861 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:964904 a rdf:Statement ;
up:attribution _:964862 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:964905 a rdf:Statement ;
up:attribution _:964863 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:964906 a rdf:Statement ;
up:attribution _:964864 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:964907 a rdf:Statement ;
up:attribution _:964865 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:964908 a rdf:Statement ;
up:attribution _:964866 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:964909 a rdf:Statement ;
up:attribution _:964867 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:106 .
_:964910 a rdf:Statement ;
up:attribution _:964868 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:167 .
_:964911 a rdf:Statement ;
up:attribution _:964869 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:964912 a rdf:Statement ;
up:attribution _:964870 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:325 .
_:964913 a rdf:Statement ;
up:attribution _:964871 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1038 .
_:964914 a rdf:Statement ;
up:attribution _:964872 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:945 .
_:964915 a rdf:Statement ;
up:attribution _:964873 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:964916 a rdf:Statement ;
up:attribution _:964874 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1152 .
_:964917 a rdf:Statement ;
up:attribution _:964875 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
_:964918 a rdf:Statement ;
up:attribution _:964876 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1146 .
_:964919 a rdf:Statement ;
up:attribution _:964877 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:964920 a rdf:Statement ;
up:attribution _:964878 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044166 .
_:964921 a rdf:Statement ;
up:attribution _:964879 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039621 .
_:964922 a rdf:Statement ;
up:attribution _:964880 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039624 .
_:964923 a rdf:Statement ;
up:source unirule:MF_04131 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:964924 a rdf:Statement ;
up:attribution _:964881 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:964925 a rdf:Statement ;
up:source unirule:MF_04131 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:964926 a rdf:Statement ;
up:attribution _:964882 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:964927 a rdf:Statement ;
up:source unirule:MF_04131 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:964928 a rdf:Statement ;
up:attribution _:964883 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:964929 a rdf:Statement ;
up:source unirule:MF_04131 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:964930 a rdf:Statement ;
up:attribution _:964884 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:964931 a rdf:Statement ;
up:source unirule:MF_04131 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:964932 a rdf:Statement ;
up:attribution _:964885 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:964933 a rdf:Statement ;
up:source unirule:MF_04131 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:964934 a rdf:Statement ;
up:attribution _:964886 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:964935 a rdf:Statement ;
up:source unirule:MF_04131 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:964936 a rdf:Statement ;
up:attribution _:964887 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:964937 a rdf:Statement ;
up:source unirule:MF_04131 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:964938 a rdf:Statement ;
up:attribution _:964888 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:964939 a rdf:Statement ;
up:source unirule:MF_04131 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:964940 a rdf:Statement ;
up:attribution _:964889 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:964941 a rdf:Statement ;
up:source unirule:MF_04131 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:964942 a rdf:Statement ;
up:attribution _:964890 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:964943 a rdf:Statement ;
up:source unirule:MF_04131 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:964944 a rdf:Statement ;
up:attribution _:964891 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:964945 a rdf:Statement ;
up:source unirule:MF_04131 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:964946 a rdf:Statement ;
up:attribution _:964892 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:964947 a rdf:Statement ;
up:source unirule:MF_04131 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:964948 a rdf:Statement ;
up:attribution _:964893 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:964949 a rdf:Statement ;
up:source unirule:MF_04131 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:964950 a rdf:Statement ;
up:attribution _:964894 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:964951 a rdf:Statement ;
up:source unirule:MF_04131 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:964952 a rdf:Statement ;
up:attribution _:964895 ;
rdf:subject ?pfs104 ;
rdf:predicate up:annotation ;
rdf:object ?annotation105 .
_:964953 a rdf:Statement ;
up:source unirule:MF_04131 ;
rdf:subject ?pfs110 ;
rdf:predicate up:annotation ;
rdf:object ?annotation111 .
_:964954 a rdf:Statement ;
up:attribution _:964896 ;
rdf:subject ?pfs110 ;
rdf:predicate up:annotation ;
rdf:object ?annotation111 .
_:964955 a rdf:Statement ;
up:source unirule:MF_04131 ;
rdf:subject ?pfs116 ;
rdf:predicate up:annotation ;
rdf:object ?annotation117 .
_:964956 a rdf:Statement ;
up:attribution _:964897 ;
rdf:subject ?pfs116 ;
rdf:predicate up:annotation ;
rdf:object ?annotation117 .
_:964957 a rdf:Statement ;
up:source unirule:MF_04131 ;
rdf:subject ?pfs122 ;
rdf:predicate up:annotation ;
rdf:object ?annotation123 .
_:964958 a rdf:Statement ;
up:attribution _:964898 ;
rdf:subject ?pfs122 ;
rdf:predicate up:annotation ;
rdf:object ?annotation123 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04131
#Rule MF_04131 Created by:? on:2018-03-28 Modified by:Edouard de Castro on:2022-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04131 .
?thisOrganism rdfs:subClassOf+ taxon:10912 .
BIND(URI(CONCAT(STR(?this), '#MF_04131a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionA2T3P5133 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2T3P5135 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2T3P5MF_04131128 .
?templateMotifSequenceMatchRegionA2T3P5133 faldo:begin ?templateMotifSequenceMatchBeginA2T3P5134 .
?templateMotifSequenceMatchBeginA2T3P5134 faldo:position ?templateMotifSequenceMatchBeginPositionA2T3P5129 ;
faldo:reference isoform:A2T3P5-1 .
?templateMotifSequenceProfileAlignmentOperationA2T3P5135 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04131139 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2T3P5MF_04131130 .
?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04131138 .
?targetMotifMatchRegionMatchBeginMF_04131138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04131131 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04131139 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131128, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131128) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131128, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionA2T3P5129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131130, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131130) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131130, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131130) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_04131131) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse14) .
FILTER ((BOUND(?thisPositionOn15) && BOUND(?thisPositionOn16))) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch147 faldo:location ?templateMotifSequenceMatchRegionA2T3P5148 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2T3P5150 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2T3P5MF_04131143 .
?templateMotifSequenceMatchRegionA2T3P5148 faldo:begin ?templateMotifSequenceMatchBeginA2T3P5149 .
?templateMotifSequenceMatchBeginA2T3P5149 faldo:position ?templateMotifSequenceMatchBeginPositionA2T3P5144 ;
faldo:reference isoform:A2T3P5-1 .
?templateMotifSequenceProfileAlignmentOperationA2T3P5150 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
?targetMotifMatch151 faldo:location ?targetMotifMatchRegionMatch152 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04131154 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2T3P5MF_04131145 .
?targetMotifMatchRegionMatch152 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04131153 .
?targetMotifMatchRegionMatchBeginMF_04131153 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04131146 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04131154 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131143, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131143) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131143, CONCAT('^(?:-*[^-]){', STR(((51 - ?templateMotifSequenceMatchBeginPositionA2T3P5144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131145, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131145) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131145, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131145) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) .
BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_04131146) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t157) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER ((BOUND(?thisPositionOn21) && BOUND(?thisPositionOn22))) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch162 faldo:location ?templateMotifSequenceMatchRegionA2T3P5163 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2T3P5165 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2T3P5MF_04131158 .
?templateMotifSequenceMatchRegionA2T3P5163 faldo:begin ?templateMotifSequenceMatchBeginA2T3P5164 .
?templateMotifSequenceMatchBeginA2T3P5164 faldo:position ?templateMotifSequenceMatchBeginPositionA2T3P5159 ;
faldo:reference isoform:A2T3P5-1 .
?templateMotifSequenceProfileAlignmentOperationA2T3P5165 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
?targetMotifMatch166 faldo:location ?targetMotifMatchRegionMatch167 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04131169 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2T3P5MF_04131160 .
?targetMotifMatchRegionMatch167 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04131168 .
?targetMotifMatchRegionMatchBeginMF_04131168 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04131161 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04131169 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131158, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131158) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131158, CONCAT('^(?:-*[^-]){', STR(((95 - ?templateMotifSequenceMatchBeginPositionA2T3P5159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131160, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131160) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131160, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131160) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) .
BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_04131161) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t172) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch177 faldo:location ?templateMotifSequenceMatchRegionA2T3P5178 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2T3P5180 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2T3P5MF_04131173 .
?templateMotifSequenceMatchRegionA2T3P5178 faldo:begin ?templateMotifSequenceMatchBeginA2T3P5179 .
?templateMotifSequenceMatchBeginA2T3P5179 faldo:position ?templateMotifSequenceMatchBeginPositionA2T3P5174 ;
faldo:reference isoform:A2T3P5-1 .
?templateMotifSequenceProfileAlignmentOperationA2T3P5180 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
?targetMotifMatch181 faldo:location ?targetMotifMatchRegionMatch182 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04131184 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2T3P5MF_04131175 .
?targetMotifMatchRegionMatch182 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04131183 .
?targetMotifMatchRegionMatchBeginMF_04131183 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04131176 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04131184 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131173, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131173) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131173, CONCAT('^(?:-*[^-]){', STR(((206 - ?templateMotifSequenceMatchBeginPositionA2T3P5174) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131175, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131175) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131175, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131175) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) .
BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_04131176) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t187) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch192 faldo:location ?templateMotifSequenceMatchRegionA2T3P5193 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2T3P5195 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2T3P5MF_04131188 .
?templateMotifSequenceMatchRegionA2T3P5193 faldo:begin ?templateMotifSequenceMatchBeginA2T3P5194 .
?templateMotifSequenceMatchBeginA2T3P5194 faldo:position ?templateMotifSequenceMatchBeginPositionA2T3P5189 ;
faldo:reference isoform:A2T3P5-1 .
?templateMotifSequenceProfileAlignmentOperationA2T3P5195 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
?targetMotifMatch196 faldo:location ?targetMotifMatchRegionMatch197 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04131199 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2T3P5MF_04131190 .
?targetMotifMatchRegionMatch197 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04131198 .
?targetMotifMatchRegionMatchBeginMF_04131198 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04131191 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04131199 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131188, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131188) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131188, CONCAT('^(?:-*[^-]){', STR(((214 - ?templateMotifSequenceMatchBeginPositionA2T3P5189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1200) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131190, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131190) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131190, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131190) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), '')))), '[^-]', ''))) AS ?step2201) .
BIND(((?step2201 + ?targetMotifMatchRegionMatchBeginPositionMF_04131191) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t202) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch207 faldo:location ?templateMotifSequenceMatchRegionA2T3P5208 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2T3P5210 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2T3P5MF_04131203 .
?templateMotifSequenceMatchRegionA2T3P5208 faldo:begin ?templateMotifSequenceMatchBeginA2T3P5209 .
?templateMotifSequenceMatchBeginA2T3P5209 faldo:position ?templateMotifSequenceMatchBeginPositionA2T3P5204 ;
faldo:reference isoform:A2T3P5-1 .
?templateMotifSequenceProfileAlignmentOperationA2T3P5210 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
?targetMotifMatch211 faldo:location ?targetMotifMatchRegionMatch212 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04131214 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2T3P5MF_04131205 .
?targetMotifMatchRegionMatch212 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04131213 .
?targetMotifMatchRegionMatchBeginMF_04131213 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04131206 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04131214 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131203, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131203) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131203, CONCAT('^(?:-*[^-]){', STR(((216 - ?templateMotifSequenceMatchBeginPositionA2T3P5204) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1215) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131205, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131205) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131205, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131205) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), '')))), '[^-]', ''))) AS ?step2216) .
BIND(((?step2216 + ?targetMotifMatchRegionMatchBeginPositionMF_04131206) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t217) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch222 faldo:location ?templateMotifSequenceMatchRegionA2T3P5223 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2T3P5225 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2T3P5MF_04131218 .
?templateMotifSequenceMatchRegionA2T3P5223 faldo:begin ?templateMotifSequenceMatchBeginA2T3P5224 .
?templateMotifSequenceMatchBeginA2T3P5224 faldo:position ?templateMotifSequenceMatchBeginPositionA2T3P5219 ;
faldo:reference isoform:A2T3P5-1 .
?templateMotifSequenceProfileAlignmentOperationA2T3P5225 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
?targetMotifMatch226 faldo:location ?targetMotifMatchRegionMatch227 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04131229 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2T3P5MF_04131220 .
?targetMotifMatchRegionMatch227 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04131228 .
?targetMotifMatchRegionMatchBeginMF_04131228 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04131221 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04131229 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131218, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131218) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131218, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionA2T3P5219) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1230) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131220, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131220) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131220, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131220) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), '')))), '[^-]', ''))) AS ?step2231) .
BIND(((?step2231 + ?targetMotifMatchRegionMatchBeginPositionMF_04131221) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t232) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch237 faldo:location ?templateMotifSequenceMatchRegionA2T3P5238 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2T3P5240 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2T3P5MF_04131233 .
?templateMotifSequenceMatchRegionA2T3P5238 faldo:begin ?templateMotifSequenceMatchBeginA2T3P5239 .
?templateMotifSequenceMatchBeginA2T3P5239 faldo:position ?templateMotifSequenceMatchBeginPositionA2T3P5234 ;
faldo:reference isoform:A2T3P5-1 .
?templateMotifSequenceProfileAlignmentOperationA2T3P5240 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
?targetMotifMatch241 faldo:location ?targetMotifMatchRegionMatch242 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04131244 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2T3P5MF_04131235 .
?targetMotifMatchRegionMatch242 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04131243 .
?targetMotifMatchRegionMatchBeginMF_04131243 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04131236 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04131244 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131233, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131233) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131233, CONCAT('^(?:-*[^-]){', STR(((228 - ?templateMotifSequenceMatchBeginPositionA2T3P5234) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1245) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131235, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131235) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1245), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131235, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131235) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1245), '}'), '')))), '[^-]', ''))) AS ?step2246) .
BIND(((?step2246 + ?targetMotifMatchRegionMatchBeginPositionMF_04131236) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs1t247) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch252 faldo:location ?templateMotifSequenceMatchRegionA2T3P5253 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2T3P5255 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2T3P5MF_04131248 .
?templateMotifSequenceMatchRegionA2T3P5253 faldo:begin ?templateMotifSequenceMatchBeginA2T3P5254 .
?templateMotifSequenceMatchBeginA2T3P5254 faldo:position ?templateMotifSequenceMatchBeginPositionA2T3P5249 ;
faldo:reference isoform:A2T3P5-1 .
?templateMotifSequenceProfileAlignmentOperationA2T3P5255 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
?targetMotifMatch256 faldo:location ?targetMotifMatchRegionMatch257 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04131259 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2T3P5MF_04131250 .
?targetMotifMatchRegionMatch257 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04131258 .
?targetMotifMatchRegionMatchBeginMF_04131258 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04131251 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04131259 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131248, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131248) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131248, CONCAT('^(?:-*[^-]){', STR(((229 - ?templateMotifSequenceMatchBeginPositionA2T3P5249) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1260) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131250, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131250) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131250, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131250, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131250) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131250, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), '')))), '[^-]', ''))) AS ?step2261) .
BIND(((?step2261 + ?targetMotifMatchRegionMatchBeginPositionMF_04131251) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs1t262) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'V')) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch267 faldo:location ?templateMotifSequenceMatchRegionA2T3P5268 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2T3P5270 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2T3P5MF_04131263 .
?templateMotifSequenceMatchRegionA2T3P5268 faldo:begin ?templateMotifSequenceMatchBeginA2T3P5269 .
?templateMotifSequenceMatchBeginA2T3P5269 faldo:position ?templateMotifSequenceMatchBeginPositionA2T3P5264 ;
faldo:reference isoform:A2T3P5-1 .
?templateMotifSequenceProfileAlignmentOperationA2T3P5270 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
?targetMotifMatch271 faldo:location ?targetMotifMatchRegionMatch272 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04131274 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2T3P5MF_04131265 .
?targetMotifMatchRegionMatch272 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04131273 .
?targetMotifMatchRegionMatchBeginMF_04131273 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04131266 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04131274 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131263, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131263) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131263, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionA2T3P5264) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1275) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131265, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131265) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131265, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131265) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), '')))), '[^-]', ''))) AS ?step2276) .
BIND(((?step2276 + ?targetMotifMatchRegionMatchBeginPositionMF_04131266) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs1t277) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch282 faldo:location ?templateMotifSequenceMatchRegionA2T3P5283 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2T3P5285 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2T3P5MF_04131278 .
?templateMotifSequenceMatchRegionA2T3P5283 faldo:begin ?templateMotifSequenceMatchBeginA2T3P5284 .
?templateMotifSequenceMatchBeginA2T3P5284 faldo:position ?templateMotifSequenceMatchBeginPositionA2T3P5279 ;
faldo:reference isoform:A2T3P5-1 .
?templateMotifSequenceProfileAlignmentOperationA2T3P5285 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
?targetMotifMatch286 faldo:location ?targetMotifMatchRegionMatch287 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04131289 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2T3P5MF_04131280 .
?targetMotifMatchRegionMatch287 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04131288 .
?targetMotifMatchRegionMatchBeginMF_04131288 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04131281 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04131289 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131278, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131278) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131278, CONCAT('^(?:-*[^-]){', STR(((301 - ?templateMotifSequenceMatchBeginPositionA2T3P5279) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1290) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131280, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131280) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1290), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131280, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131280) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1290), '}'), '')))), '[^-]', ''))) AS ?step2291) .
BIND(((?step2291 + ?targetMotifMatchRegionMatchBeginPositionMF_04131281) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs1t292) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse82) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a80')) AS ?annotation80) .
BIND(?this AS ?pfs79) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch297 faldo:location ?templateMotifSequenceMatchRegionA2T3P5298 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2T3P5300 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2T3P5MF_04131293 .
?templateMotifSequenceMatchRegionA2T3P5298 faldo:begin ?templateMotifSequenceMatchBeginA2T3P5299 .
?templateMotifSequenceMatchBeginA2T3P5299 faldo:position ?templateMotifSequenceMatchBeginPositionA2T3P5294 ;
faldo:reference isoform:A2T3P5-1 .
?templateMotifSequenceProfileAlignmentOperationA2T3P5300 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
?targetMotifMatch301 faldo:location ?targetMotifMatchRegionMatch302 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04131304 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2T3P5MF_04131295 .
?targetMotifMatchRegionMatch302 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04131303 .
?targetMotifMatchRegionMatchBeginMF_04131303 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04131296 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04131304 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131293, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131293) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131293, CONCAT('^(?:-*[^-]){', STR(((82 - ?templateMotifSequenceMatchBeginPositionA2T3P5294) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1305) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131295, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131295) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1305), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131295, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131295) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1305), '}'), '')))), '[^-]', ''))) AS ?step2306) .
BIND(((?step2306 + ?targetMotifMatchRegionMatchBeginPositionMF_04131296) - 1) AS ?thisPositionOn90) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131293, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131293) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131293, CONCAT('^(?:-*[^-]){', STR(((135 - ?templateMotifSequenceMatchBeginPositionA2T3P5294) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1307) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131295, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131295) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131295, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131295) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1307), '}'), '')))), '[^-]', ''))) AS ?step2308) .
BIND(((?step2308 + ?targetMotifMatchRegionMatchBeginPositionMF_04131296) - 1) AS ?thisPositionOn91) .
BIND(?this AS ?pfs1t309) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfse89) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn90, (?thisPositionOn91 - ?thisPositionOn90)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch314 faldo:location ?templateMotifSequenceMatchRegionA2T3P5315 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2T3P5317 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2T3P5MF_04131310 .
?templateMotifSequenceMatchRegionA2T3P5315 faldo:begin ?templateMotifSequenceMatchBeginA2T3P5316 .
?templateMotifSequenceMatchBeginA2T3P5316 faldo:position ?templateMotifSequenceMatchBeginPositionA2T3P5311 ;
faldo:reference isoform:A2T3P5-1 .
?templateMotifSequenceProfileAlignmentOperationA2T3P5317 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
?targetMotifMatch318 faldo:location ?targetMotifMatchRegionMatch319 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04131321 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2T3P5MF_04131312 .
?targetMotifMatchRegionMatch319 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04131320 .
?targetMotifMatchRegionMatchBeginMF_04131320 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04131313 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04131321 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131310, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131310) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131310, CONCAT('^(?:-*[^-]){', STR(((165 - ?templateMotifSequenceMatchBeginPositionA2T3P5311) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1322) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131312, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131312) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1322), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131312, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131312) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1322), '}'), '')))), '[^-]', ''))) AS ?step2323) .
BIND(((?step2323 + ?targetMotifMatchRegionMatchBeginPositionMF_04131313) - 1) AS ?thisPositionOn96) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131310, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131310) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131310, CONCAT('^(?:-*[^-]){', STR(((249 - ?templateMotifSequenceMatchBeginPositionA2T3P5311) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1324) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131312, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131312) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131312, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131312) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131312, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1324), '}'), '')))), '[^-]', ''))) AS ?step2325) .
BIND(((?step2325 + ?targetMotifMatchRegionMatchBeginPositionMF_04131313) - 1) AS ?thisPositionOn97) .
BIND(?this AS ?pfs1t326) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse95) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn96, (?thisPositionOn97 - ?thisPositionOn96)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a93')) AS ?annotation93) .
BIND(?this AS ?pfs92) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch331 faldo:location ?templateMotifSequenceMatchRegionA2T3P5332 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2T3P5334 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2T3P5MF_04131327 .
?templateMotifSequenceMatchRegionA2T3P5332 faldo:begin ?templateMotifSequenceMatchBeginA2T3P5333 .
?templateMotifSequenceMatchBeginA2T3P5333 faldo:position ?templateMotifSequenceMatchBeginPositionA2T3P5328 ;
faldo:reference isoform:A2T3P5-1 .
?templateMotifSequenceProfileAlignmentOperationA2T3P5334 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
?targetMotifMatch335 faldo:location ?targetMotifMatchRegionMatch336 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04131338 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2T3P5MF_04131329 .
?targetMotifMatchRegionMatch336 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04131337 .
?targetMotifMatchRegionMatchBeginMF_04131337 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04131330 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04131338 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131327, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131327) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131327, CONCAT('^(?:-*[^-]){', STR(((191 - ?templateMotifSequenceMatchBeginPositionA2T3P5328) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1339) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131329, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131329) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131329, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131329) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1339), '}'), '')))), '[^-]', ''))) AS ?step2340) .
BIND(((?step2340 + ?targetMotifMatchRegionMatchBeginPositionMF_04131330) - 1) AS ?thisPositionOn102) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131327, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131327) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131327, CONCAT('^(?:-*[^-]){', STR(((244 - ?templateMotifSequenceMatchBeginPositionA2T3P5328) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1341) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131329, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131329) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1341), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131329, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131329) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131329, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1341), '}'), '')))), '[^-]', ''))) AS ?step2342) .
BIND(((?step2342 + ?targetMotifMatchRegionMatchBeginPositionMF_04131330) - 1) AS ?thisPositionOn103) .
BIND(?this AS ?pfs1t343) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfsb100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfse101) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn102, (?thisPositionOn103 - ?thisPositionOn102)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a99')) AS ?annotation99) .
BIND(?this AS ?pfs98) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch348 faldo:location ?templateMotifSequenceMatchRegionA2T3P5349 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2T3P5351 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2T3P5MF_04131344 .
?templateMotifSequenceMatchRegionA2T3P5349 faldo:begin ?templateMotifSequenceMatchBeginA2T3P5350 .
?templateMotifSequenceMatchBeginA2T3P5350 faldo:position ?templateMotifSequenceMatchBeginPositionA2T3P5345 ;
faldo:reference isoform:A2T3P5-1 .
?templateMotifSequenceProfileAlignmentOperationA2T3P5351 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
?targetMotifMatch352 faldo:location ?targetMotifMatchRegionMatch353 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04131355 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2T3P5MF_04131346 .
?targetMotifMatchRegionMatch353 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04131354 .
?targetMotifMatchRegionMatchBeginMF_04131354 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04131347 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04131355 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131344, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131344) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131344, CONCAT('^(?:-*[^-]){', STR(((196 - ?templateMotifSequenceMatchBeginPositionA2T3P5345) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1356) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131346, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131346) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131346, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1356), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131346, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131346) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131346, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1356), '}'), '')))), '[^-]', ''))) AS ?step2357) .
BIND(((?step2357 + ?targetMotifMatchRegionMatchBeginPositionMF_04131347) - 1) AS ?thisPositionOn108) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131344, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131344) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131344, CONCAT('^(?:-*[^-]){', STR(((207 - ?templateMotifSequenceMatchBeginPositionA2T3P5345) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1358) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131346, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131346) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131346, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1358), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131346, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131346) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131346, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1358), '}'), '')))), '[^-]', ''))) AS ?step2359) .
BIND(((?step2359 + ?targetMotifMatchRegionMatchBeginPositionMF_04131347) - 1) AS ?thisPositionOn109) .
BIND(?this AS ?pfs1t360) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfsb106) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfse107) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn108, (?thisPositionOn109 - ?thisPositionOn108)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a105')) AS ?annotation105) .
BIND(?this AS ?pfs104) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch365 faldo:location ?templateMotifSequenceMatchRegionA2T3P5366 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2T3P5368 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2T3P5MF_04131361 .
?templateMotifSequenceMatchRegionA2T3P5366 faldo:begin ?templateMotifSequenceMatchBeginA2T3P5367 .
?templateMotifSequenceMatchBeginA2T3P5367 faldo:position ?templateMotifSequenceMatchBeginPositionA2T3P5362 ;
faldo:reference isoform:A2T3P5-1 .
?templateMotifSequenceProfileAlignmentOperationA2T3P5368 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
?targetMotifMatch369 faldo:location ?targetMotifMatchRegionMatch370 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04131372 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2T3P5MF_04131363 .
?targetMotifMatchRegionMatch370 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04131371 .
?targetMotifMatchRegionMatchBeginMF_04131371 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04131364 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04131372 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131361, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131361) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131361, CONCAT('^(?:-*[^-]){', STR(((237 - ?templateMotifSequenceMatchBeginPositionA2T3P5362) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1373) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131363, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131363) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131363, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1373), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131363, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131363) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131363, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1373), '}'), '')))), '[^-]', ''))) AS ?step2374) .
BIND(((?step2374 + ?targetMotifMatchRegionMatchBeginPositionMF_04131364) - 1) AS ?thisPositionOn114) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131361, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131361) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131361, CONCAT('^(?:-*[^-]){', STR(((239 - ?templateMotifSequenceMatchBeginPositionA2T3P5362) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1375) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131363, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131363) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131363, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1375), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131363, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131363) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131363, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1375), '}'), '')))), '[^-]', ''))) AS ?step2376) .
BIND(((?step2376 + ?targetMotifMatchRegionMatchBeginPositionMF_04131364) - 1) AS ?thisPositionOn115) .
BIND(?this AS ?pfs1t377) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn114))) AS ?pfsb112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfse113) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn114, (?thisPositionOn115 - ?thisPositionOn114)) = 'LDV')) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a111')) AS ?annotation111) .
BIND(?this AS ?pfs110) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch382 faldo:location ?templateMotifSequenceMatchRegionA2T3P5383 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2T3P5385 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2T3P5MF_04131378 .
?templateMotifSequenceMatchRegionA2T3P5383 faldo:begin ?templateMotifSequenceMatchBeginA2T3P5384 .
?templateMotifSequenceMatchBeginA2T3P5384 faldo:position ?templateMotifSequenceMatchBeginPositionA2T3P5379 ;
faldo:reference isoform:A2T3P5-1 .
?templateMotifSequenceProfileAlignmentOperationA2T3P5385 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
?targetMotifMatch386 faldo:location ?targetMotifMatchRegionMatch387 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04131389 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2T3P5MF_04131380 .
?targetMotifMatchRegionMatch387 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04131388 .
?targetMotifMatchRegionMatchBeginMF_04131388 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04131381 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04131389 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131378, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131378) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131378, CONCAT('^(?:-*[^-]){', STR(((253 - ?templateMotifSequenceMatchBeginPositionA2T3P5379) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1390) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131380, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131380) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131380, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1390), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131380, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131380) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131380, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1390), '}'), '')))), '[^-]', ''))) AS ?step2391) .
BIND(((?step2391 + ?targetMotifMatchRegionMatchBeginPositionMF_04131381) - 1) AS ?thisPositionOn120) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131378, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131378) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131378, CONCAT('^(?:-*[^-]){', STR(((255 - ?templateMotifSequenceMatchBeginPositionA2T3P5379) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1392) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131380, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131380) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131380, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1392), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131380, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131380) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131380, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1392), '}'), '')))), '[^-]', ''))) AS ?step2393) .
BIND(((?step2393 + ?targetMotifMatchRegionMatchBeginPositionMF_04131381) - 1) AS ?thisPositionOn121) .
BIND(?this AS ?pfs1t394) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfsb118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn121))) AS ?pfse119) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn120, (?thisPositionOn121 - ?thisPositionOn120)) = 'GPR')) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a117')) AS ?annotation117) .
BIND(?this AS ?pfs116) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch399 faldo:location ?templateMotifSequenceMatchRegionA2T3P5400 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2T3P5402 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2T3P5MF_04131395 .
?templateMotifSequenceMatchRegionA2T3P5400 faldo:begin ?templateMotifSequenceMatchBeginA2T3P5401 .
?templateMotifSequenceMatchBeginA2T3P5401 faldo:position ?templateMotifSequenceMatchBeginPositionA2T3P5396 ;
faldo:reference isoform:A2T3P5-1 .
?templateMotifSequenceProfileAlignmentOperationA2T3P5402 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
?targetMotifMatch403 faldo:location ?targetMotifMatchRegionMatch404 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04131406 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2T3P5MF_04131397 .
?targetMotifMatchRegionMatch404 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04131405 .
?targetMotifMatchRegionMatchBeginMF_04131405 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04131398 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04131406 edam:has_input signature:MF_04131 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131395, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131395) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131395, CONCAT('^(?:-*[^-]){', STR(((165 - ?templateMotifSequenceMatchBeginPositionA2T3P5396) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1407) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131397, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131397) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131397, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1407), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131397, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131397) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131397, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1407), '}'), '')))), '[^-]', ''))) AS ?step2408) .
BIND(((?step2408 + ?targetMotifMatchRegionMatchBeginPositionMF_04131398) - 1) AS ?thisPositionOn126) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3P5MF_04131395, 1, (STRLEN(?templateMotifCigarA2T3P5MF_04131395) - STRLEN(REPLACE(?templateMotifCigarA2T3P5MF_04131395, CONCAT('^(?:-*[^-]){', STR(((167 - ?templateMotifSequenceMatchBeginPositionA2T3P5396) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1409) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131397, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131397) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131397, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1409), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3P5MF_04131397, 1, (STRLEN(?targetMotifMatchCigarA2T3P5MF_04131397) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3P5MF_04131397, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1409), '}'), '')))), '[^-]', ''))) AS ?step2410) .
BIND(((?step2410 + ?targetMotifMatchRegionMatchBeginPositionMF_04131398) - 1) AS ?thisPositionOn127) .
BIND(?this AS ?pfs1t411) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn126))) AS ?pfsb124) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfse125) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn126, (?thisPositionOn127 - ?thisPositionOn126)) = 'CNP')) .
BIND(URI(CONCAT(STR(?this), '#MF_04131a123')) AS ?annotation123) .
BIND(?this AS ?pfs122) .
}
}
"xsd:string |
