| http://purl.uniprot.org/unirules/MF_00339#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:137678 up:source unirule:MF_00339 .
_:137679 up:source unirule:MF_00339 .
_:137680 up:source unirule:MF_00339 .
_:137681 up:source unirule:MF_00339 .
_:137682 up:source unirule:MF_00339 .
_:137683 up:source unirule:MF_00339 .
_:137684 up:source unirule:MF_00339 .
_:137685 up:source unirule:MF_00339 .
_:137686 up:source unirule:MF_00339 .
_:137687 up:source unirule:MF_00339 .
_:137688 up:source unirule:MF_00339 .
_:137689 up:source unirule:MF_00339 .
_:137690 up:source unirule:MF_00339 .
_:137691 up:source unirule:MF_00339 .
_:137692 up:source unirule:MF_00339 .
_:137693 up:source unirule:MF_00339 .
_:137694 up:source unirule:MF_00339 .
_:137695 up:source unirule:MF_00339 .
_:137696 up:source unirule:MF_00339 .
_:137697 up:source unirule:MF_00339 .
_:137698 up:source unirule:MF_00339 .
_:137699 up:source unirule:MF_00339 .
_:137700 up:source unirule:MF_00339 .
_:137701 up:source unirule:MF_00339 .
_:137702 up:source unirule:MF_00339 .
_:137703 up:source unirule:MF_00339 .
_:137704 up:source unirule:MF_00339 .
_:137705 up:source unirule:MF_00339 .
_:137706 up:source unirule:MF_00339 .
_:137707 up:source unirule:MF_00339 .
_:137708 up:source unirule:MF_00339 .
_:137709 up:source unirule:MF_00339 .
_:137710 up:source unirule:MF_00339 .
_:137711 up:source unirule:MF_00339 .
_:137712 up:source unirule:MF_00339 .
_:137713 up:source unirule:MF_00339 .
_:137714 up:source unirule:MF_00339 .
_:137715 up:source unirule:MF_00339 .
_:137716 up:source unirule:MF_00339 .
_:137717 up:source unirule:MF_00339 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ,
?annotation12 ;
up:classifiedWith GO:0003872 ,
GO:0005737 ,
GO:0006096 ,
keyword:21 ,
keyword:324 ,
keyword:418 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:67 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.1.11' ;
up:fullName 'ATP-dependent 6-phosphofructokinase' ;
up:shortName 'ATP-PFK' ,
'Phosphofructokinase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Phosphohexokinase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'pfkA' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation7 a up:Activity_Regulation_Annotation ;
rdfs:comment 'Allosterically activated by ADP and other diphosphonucleosides, and allosterically inhibited by phosphoenolpyruvate.' .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 3/4.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation10 a up:Subcellular_Location_Annotation .
?annotation10li11 up:cellularComponent .
?annotation12 a up:Similarity_Annotation ;
rdfs:comment "Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Prokaryotic clade 'B1' sub-subfamily." .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:30616 .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:30616 .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf chebi:456216 .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf chebi:456216 .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb43 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf ?molecule46 .
?molecule46 rdfs:label 'substrate' .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb51 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf ?molecule54 .
?molecule54 rdfs:label 'substrate' .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf chebi:456216 .
?pfs64 up:annotation ?annotation65 .
?annotation65 faldo:begin ?pfsb66 ;
faldo:end ?pfse67 ;
up:ligand ?ligand68 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb66 faldo:position ?thisPositionOn69 ;
rdf:type faldo:ExactPosition .
?pfse67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?ligand68 rdfs:subClassOf chebi:456216 .
?pfs71 up:annotation ?annotation72 .
?annotation72 faldo:begin ?pfsb73 ;
faldo:end ?pfse74 ;
up:ligand ?ligand75 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb73 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse74 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand75 rdfs:subClassOf ?molecule76 .
?molecule76 rdfs:label 'substrate' .
?pfs79 up:annotation ?annotation80 .
?annotation80 faldo:begin ?pfsb81 ;
faldo:end ?pfse82 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb81 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?pfse82 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfs85 up:annotation ?annotation86 .
?annotation86 faldo:begin ?pfsb87 ;
faldo:end ?pfse88 ;
up:ligand ?ligand89 ;
rdf:type up:Binding_Site_Annotation .
?pfsb87 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?pfse88 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?ligand89 rdfs:subClassOf chebi:18420 .
?pfs92 up:annotation ?annotation93 .
?annotation93 faldo:begin ?pfsb94 ;
faldo:end ?pfse95 ;
up:ligand ?ligand96 ;
rdf:type up:Binding_Site_Annotation .
?pfsb94 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?pfse95 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?ligand96 rdfs:subClassOf chebi:30616 .
?pfs99 up:annotation ?annotation100 .
?annotation100 faldo:begin ?pfsb101 ;
faldo:end ?pfse102 ;
up:ligand ?ligand103 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb101 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
?pfse102 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?ligand103 rdfs:subClassOf chebi:456216 .
?pfs106 up:annotation ?annotation107 .
?annotation107 faldo:begin ?pfsb108 ;
faldo:end ?pfse109 ;
up:ligand ?ligand110 ;
rdf:type up:Binding_Site_Annotation .
?pfsb108 faldo:position ?thisPositionOn112 ;
rdf:type faldo:ExactPosition .
?pfse109 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?ligand110 rdfs:subClassOf ?molecule111 .
?molecule111 rdfs:label 'substrate' .
?pfs114 up:annotation ?annotation115 .
?annotation115 faldo:begin ?pfsb116 ;
faldo:end ?pfse117 ;
up:ligand ?ligand118 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb116 faldo:position ?thisPositionOn119 ;
rdf:type faldo:ExactPosition .
?pfse117 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?ligand118 rdfs:subClassOf chebi:456216 .
?pfs121 up:annotation ?annotation122 .
?annotation122 faldo:begin ?pfsb123 ;
faldo:end ?pfse124 ;
up:ligand ?ligand125 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in other chain' .
?pfsb123 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
?pfse124 faldo:position ?thisPositionOn128 ;
rdf:type faldo:ExactPosition .
?ligand125 rdfs:subClassOf ?molecule126 .
?molecule126 rdfs:label 'substrate' .
?pfs129 up:annotation ?annotation130 .
?annotation130 faldo:begin ?pfsb131 ;
faldo:end ?pfse132 ;
up:ligand ?ligand133 ;
rdf:type up:Binding_Site_Annotation .
?pfsb131 faldo:position ?thisPositionOn135 ;
rdf:type faldo:ExactPosition .
?pfse132 faldo:position ?thisPositionOn136 ;
rdf:type faldo:ExactPosition .
?ligand133 rdfs:subClassOf ?molecule134 .
?molecule134 rdfs:label 'substrate' .
_:137718 a rdf:Statement ;
up:attribution _:137678 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:137719 a rdf:Statement ;
up:attribution _:137679 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:137720 a rdf:Statement ;
up:attribution _:137680 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:137721 a rdf:Statement ;
up:attribution _:137681 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:137722 a rdf:Statement ;
up:attribution _:137682 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:137723 a rdf:Statement ;
up:attribution _:137683 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:137724 a rdf:Statement ;
up:attribution _:137684 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:137725 a rdf:Statement ;
up:attribution _:137685 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:137726 a rdf:Statement ;
up:attribution _:137686 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:137727 a rdf:Statement ;
up:attribution _:137687 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:137728 a rdf:Statement ;
up:attribution _:137688 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:137729 a rdf:Statement ;
up:attribution _:137689 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:21 .
_:137730 a rdf:Statement ;
up:attribution _:137690 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:137731 a rdf:Statement ;
up:attribution _:137691 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:418 .
_:137732 a rdf:Statement ;
up:attribution _:137692 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:137733 a rdf:Statement ;
up:attribution _:137693 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:324 .
_:137734 a rdf:Statement ;
up:attribution _:137694 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:137735 a rdf:Statement ;
up:attribution _:137695 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:137736 a rdf:Statement ;
up:attribution _:137696 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:137737 a rdf:Statement ;
up:attribution _:137697 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:137738 a rdf:Statement ;
up:attribution _:137698 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003872 .
_:137739 a rdf:Statement ;
up:attribution _:137699 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006096 .
_:137740 a rdf:Statement ;
up:attribution _:137700 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:137741 a rdf:Statement ;
up:source unirule:MF_00339 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:137742 a rdf:Statement ;
up:attribution _:137701 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:137743 a rdf:Statement ;
up:source unirule:MF_00339 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:137744 a rdf:Statement ;
up:attribution _:137702 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:137745 a rdf:Statement ;
up:source unirule:MF_00339 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:137746 a rdf:Statement ;
up:attribution _:137703 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:137747 a rdf:Statement ;
up:source unirule:MF_00339 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:137748 a rdf:Statement ;
up:attribution _:137704 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:137749 a rdf:Statement ;
up:source unirule:MF_00339 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:137750 a rdf:Statement ;
up:attribution _:137705 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:137751 a rdf:Statement ;
up:source unirule:MF_00339 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:137752 a rdf:Statement ;
up:attribution _:137706 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:137753 a rdf:Statement ;
up:source unirule:MF_00339 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:137754 a rdf:Statement ;
up:attribution _:137707 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:137755 a rdf:Statement ;
up:source unirule:MF_00339 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:137756 a rdf:Statement ;
up:attribution _:137708 ;
rdf:subject ?pfs64 ;
rdf:predicate up:annotation ;
rdf:object ?annotation65 .
_:137757 a rdf:Statement ;
up:source unirule:MF_00339 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:137758 a rdf:Statement ;
up:attribution _:137709 ;
rdf:subject ?pfs71 ;
rdf:predicate up:annotation ;
rdf:object ?annotation72 .
_:137759 a rdf:Statement ;
up:source unirule:MF_00339 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:137760 a rdf:Statement ;
up:attribution _:137710 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:137761 a rdf:Statement ;
up:source unirule:MF_00339 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
_:137762 a rdf:Statement ;
up:attribution _:137711 ;
rdf:subject ?pfs85 ;
rdf:predicate up:annotation ;
rdf:object ?annotation86 .
_:137763 a rdf:Statement ;
up:source unirule:MF_00339 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:137764 a rdf:Statement ;
up:attribution _:137712 ;
rdf:subject ?pfs92 ;
rdf:predicate up:annotation ;
rdf:object ?annotation93 .
_:137765 a rdf:Statement ;
up:source unirule:MF_00339 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
_:137766 a rdf:Statement ;
up:attribution _:137713 ;
rdf:subject ?pfs99 ;
rdf:predicate up:annotation ;
rdf:object ?annotation100 .
_:137767 a rdf:Statement ;
up:source unirule:MF_00339 ;
rdf:subject ?pfs106 ;
rdf:predicate up:annotation ;
rdf:object ?annotation107 .
_:137768 a rdf:Statement ;
up:attribution _:137714 ;
rdf:subject ?pfs106 ;
rdf:predicate up:annotation ;
rdf:object ?annotation107 .
_:137769 a rdf:Statement ;
up:source unirule:MF_00339 ;
rdf:subject ?pfs114 ;
rdf:predicate up:annotation ;
rdf:object ?annotation115 .
_:137770 a rdf:Statement ;
up:attribution _:137715 ;
rdf:subject ?pfs114 ;
rdf:predicate up:annotation ;
rdf:object ?annotation115 .
_:137771 a rdf:Statement ;
up:source unirule:MF_00339 ;
rdf:subject ?pfs121 ;
rdf:predicate up:annotation ;
rdf:object ?annotation122 .
_:137772 a rdf:Statement ;
up:attribution _:137716 ;
rdf:subject ?pfs121 ;
rdf:predicate up:annotation ;
rdf:object ?annotation122 .
_:137773 a rdf:Statement ;
up:source unirule:MF_00339 ;
rdf:subject ?pfs129 ;
rdf:predicate up:annotation ;
rdf:object ?annotation130 .
_:137774 a rdf:Statement ;
up:attribution _:137717 ;
rdf:subject ?pfs129 ;
rdf:predicate up:annotation ;
rdf:object ?annotation130 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00339
#Rule MF_00339 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00339 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00339a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a12')) AS ?annotation12) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch141 faldo:location ?templateMotifSequenceMatchRegionP0A796142 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A796144 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A796MF_00339137 .
?templateMotifSequenceMatchRegionP0A796142 faldo:begin ?templateMotifSequenceMatchBeginP0A796143 .
?templateMotifSequenceMatchBeginP0A796143 faldo:position ?templateMotifSequenceMatchBeginPositionP0A796138 ;
faldo:reference isoform:P0A796-1 .
?templateMotifSequenceProfileAlignmentOperationP0A796144 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
?targetMotifMatch145 faldo:location ?targetMotifMatchRegionMatch146 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00339148 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A796MF_00339139 .
?targetMotifMatchRegionMatch146 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00339147 .
?targetMotifMatchRegionMatchBeginMF_00339147 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00339140 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00339148 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339137, 1, (STRLEN(?templateMotifCigarP0A796MF_00339137) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339137, CONCAT('^(?:-*[^-]){', STR(((73 - ?templateMotifSequenceMatchBeginPositionP0A796138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339139, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339139) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339139, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339139) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1149), '}'), '')))), '[^-]', ''))) AS ?step2150) .
BIND(((?step2150 + ?targetMotifMatchRegionMatchBeginPositionMF_00339140) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339137, 1, (STRLEN(?templateMotifCigarP0A796MF_00339137) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339137, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionP0A796138) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339139, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339139) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339139, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339139) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339139, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) .
BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_00339140) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t153) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER (REGEX('R[ARNDCQEGHILKMFPSTWYVBZJUOX]', SUBSTR(?thisSequenceValue, ?thisPositionOn18, (?thisPositionOn19 - ?thisPositionOn18)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionP0A796159 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A796161 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A796MF_00339154 .
?templateMotifSequenceMatchRegionP0A796159 faldo:begin ?templateMotifSequenceMatchBeginP0A796160 .
?templateMotifSequenceMatchBeginP0A796160 faldo:position ?templateMotifSequenceMatchBeginPositionP0A796155 ;
faldo:reference isoform:P0A796-1 .
?templateMotifSequenceProfileAlignmentOperationP0A796161 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00339165 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A796MF_00339156 .
?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00339164 .
?targetMotifMatchRegionMatchBeginMF_00339164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00339157 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00339165 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339154, 1, (STRLEN(?templateMotifCigarP0A796MF_00339154) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339154, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionP0A796155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339156, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339156) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339156, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339156) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) .
BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_00339157) - 1) AS ?thisPositionOn25) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339154, 1, (STRLEN(?templateMotifCigarP0A796MF_00339154) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339154, CONCAT('^(?:-*[^-]){', STR(((106 - ?templateMotifSequenceMatchBeginPositionP0A796155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339156, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339156) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339156, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339156) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) .
BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_00339157) - 1) AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t170) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER (REGEX('G[DEN]G[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn25, (?thisPositionOn26 - ?thisPositionOn25)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch175 faldo:location ?templateMotifSequenceMatchRegionP0A796176 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A796178 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A796MF_00339171 .
?templateMotifSequenceMatchRegionP0A796176 faldo:begin ?templateMotifSequenceMatchBeginP0A796177 .
?templateMotifSequenceMatchBeginP0A796177 faldo:position ?templateMotifSequenceMatchBeginPositionP0A796172 ;
faldo:reference isoform:P0A796-1 .
?templateMotifSequenceProfileAlignmentOperationP0A796178 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
?targetMotifMatch179 faldo:location ?targetMotifMatchRegionMatch180 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00339182 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A796MF_00339173 .
?targetMotifMatchRegionMatch180 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00339181 .
?targetMotifMatchRegionMatchBeginMF_00339181 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00339174 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00339182 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339171, 1, (STRLEN(?templateMotifCigarP0A796MF_00339171) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339171, CONCAT('^(?:-*[^-]){', STR(((22 - ?templateMotifSequenceMatchBeginPositionP0A796172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339173, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339173) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339173, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339173) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1183), '}'), '')))), '[^-]', ''))) AS ?step2184) .
BIND(((?step2184 + ?targetMotifMatchRegionMatchBeginPositionMF_00339174) - 1) AS ?thisPositionOn32) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339171, 1, (STRLEN(?templateMotifCigarP0A796MF_00339171) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339171, CONCAT('^(?:-*[^-]){', STR(((26 - ?templateMotifSequenceMatchBeginPositionP0A796172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339173, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339173) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339173, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339173) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339173, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) .
BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_00339174) - 1) AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t187) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) .
FILTER (REGEX('R[ARNDCQEGHILKMFPSTWYVBZJUOX]{3)[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn32, (?thisPositionOn33 - ?thisPositionOn32)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch192 faldo:location ?templateMotifSequenceMatchRegionP0A796193 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A796195 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A796MF_00339188 .
?templateMotifSequenceMatchRegionP0A796193 faldo:begin ?templateMotifSequenceMatchBeginP0A796194 .
?templateMotifSequenceMatchBeginP0A796194 faldo:position ?templateMotifSequenceMatchBeginPositionP0A796189 ;
faldo:reference isoform:P0A796-1 .
?templateMotifSequenceProfileAlignmentOperationP0A796195 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
?targetMotifMatch196 faldo:location ?targetMotifMatchRegionMatch197 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00339199 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A796MF_00339190 .
?targetMotifMatchRegionMatch197 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00339198 .
?targetMotifMatchRegionMatchBeginMF_00339198 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00339191 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00339199 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339188, 1, (STRLEN(?templateMotifCigarP0A796MF_00339188) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339188, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionP0A796189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1200) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339190, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339190) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339190, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339190) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), '')))), '[^-]', ''))) AS ?step2201) .
BIND(((?step2201 + ?targetMotifMatchRegionMatchBeginPositionMF_00339191) - 1) AS ?thisPositionOn39) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339188, 1, (STRLEN(?templateMotifCigarP0A796MF_00339188) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339188, CONCAT('^(?:-*[^-]){', STR(((60 - ?templateMotifSequenceMatchBeginPositionP0A796189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1202) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339190, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339190) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339190, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339190) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1202), '}'), '')))), '[^-]', ''))) AS ?step2203) .
BIND(((?step2203 + ?targetMotifMatchRegionMatchBeginPositionMF_00339191) - 1) AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t204) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) .
FILTER (REGEX('RY[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)S[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn39, (?thisPositionOn40 - ?thisPositionOn39)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch209 faldo:location ?templateMotifSequenceMatchRegionP0A796210 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A796212 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A796MF_00339205 .
?templateMotifSequenceMatchRegionP0A796210 faldo:begin ?templateMotifSequenceMatchBeginP0A796211 .
?templateMotifSequenceMatchBeginP0A796211 faldo:position ?templateMotifSequenceMatchBeginPositionP0A796206 ;
faldo:reference isoform:P0A796-1 .
?templateMotifSequenceProfileAlignmentOperationP0A796212 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
?targetMotifMatch213 faldo:location ?targetMotifMatchRegionMatch214 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00339216 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A796MF_00339207 .
?targetMotifMatchRegionMatch214 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00339215 .
?targetMotifMatchRegionMatchBeginMF_00339215 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00339208 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00339216 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339205, 1, (STRLEN(?templateMotifCigarP0A796MF_00339205) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339205, CONCAT('^(?:-*[^-]){', STR(((126 - ?templateMotifSequenceMatchBeginPositionP0A796206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1217) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339207, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339207) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339207, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339207) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1217), '}'), '')))), '[^-]', ''))) AS ?step2218) .
BIND(((?step2218 + ?targetMotifMatchRegionMatchBeginPositionMF_00339208) - 1) AS ?thisPositionOn47) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339205, 1, (STRLEN(?templateMotifCigarP0A796MF_00339205) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339205, CONCAT('^(?:-*[^-]){', STR(((128 - ?templateMotifSequenceMatchBeginPositionP0A796206) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1219) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339207, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339207) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339207, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339207) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339207, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1219), '}'), '')))), '[^-]', ''))) AS ?step2220) .
BIND(((?step2220 + ?targetMotifMatchRegionMatchBeginPositionMF_00339208) - 1) AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t221) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse44) .
FILTER (REGEX('[TS][ARNDCQEGHILKMFPSTWYVBZJUOX]D', SUBSTR(?thisSequenceValue, ?thisPositionOn47, (?thisPositionOn48 - ?thisPositionOn47)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch226 faldo:location ?templateMotifSequenceMatchRegionP0A796227 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A796229 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A796MF_00339222 .
?templateMotifSequenceMatchRegionP0A796227 faldo:begin ?templateMotifSequenceMatchBeginP0A796228 .
?templateMotifSequenceMatchBeginP0A796228 faldo:position ?templateMotifSequenceMatchBeginPositionP0A796223 ;
faldo:reference isoform:P0A796-1 .
?templateMotifSequenceProfileAlignmentOperationP0A796229 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
?targetMotifMatch230 faldo:location ?targetMotifMatchRegionMatch231 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00339233 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A796MF_00339224 .
?targetMotifMatchRegionMatch231 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00339232 .
?targetMotifMatchRegionMatchBeginMF_00339232 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00339225 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00339233 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339222, 1, (STRLEN(?templateMotifCigarP0A796MF_00339222) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339222, CONCAT('^(?:-*[^-]){', STR(((170 - ?templateMotifSequenceMatchBeginPositionP0A796223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1234) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339224, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339224) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339224, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339224) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1234), '}'), '')))), '[^-]', ''))) AS ?step2235) .
BIND(((?step2235 + ?targetMotifMatchRegionMatchBeginPositionMF_00339225) - 1) AS ?thisPositionOn55) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339222, 1, (STRLEN(?templateMotifCigarP0A796MF_00339222) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339222, CONCAT('^(?:-*[^-]){', STR(((172 - ?templateMotifSequenceMatchBeginPositionP0A796223) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1236) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339224, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339224) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339224, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339224) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339224, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1236), '}'), '')))), '[^-]', ''))) AS ?step2237) .
BIND(((?step2237 + ?targetMotifMatchRegionMatchBeginPositionMF_00339225) - 1) AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t238) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse52) .
FILTER (REGEX('MG[RHN]', SUBSTR(?thisSequenceValue, ?thisPositionOn55, (?thisPositionOn56 - ?thisPositionOn55)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch243 faldo:location ?templateMotifSequenceMatchRegionP0A796244 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A796246 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A796MF_00339239 .
?templateMotifSequenceMatchRegionP0A796244 faldo:begin ?templateMotifSequenceMatchBeginP0A796245 .
?templateMotifSequenceMatchBeginP0A796245 faldo:position ?templateMotifSequenceMatchBeginPositionP0A796240 ;
faldo:reference isoform:P0A796-1 .
?templateMotifSequenceProfileAlignmentOperationP0A796246 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
?targetMotifMatch247 faldo:location ?targetMotifMatchRegionMatch248 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00339250 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A796MF_00339241 .
?targetMotifMatchRegionMatch248 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00339249 .
?targetMotifMatchRegionMatchBeginMF_00339249 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00339242 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00339250 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339239, 1, (STRLEN(?templateMotifCigarP0A796MF_00339239) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339239, CONCAT('^(?:-*[^-]){', STR(((186 - ?templateMotifSequenceMatchBeginPositionP0A796240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1251) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339241, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339241) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339241, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339241) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1251), '}'), '')))), '[^-]', ''))) AS ?step2252) .
BIND(((?step2252 + ?targetMotifMatchRegionMatchBeginPositionMF_00339242) - 1) AS ?thisPositionOn62) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339239, 1, (STRLEN(?templateMotifCigarP0A796MF_00339239) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339239, CONCAT('^(?:-*[^-]){', STR(((188 - ?templateMotifSequenceMatchBeginPositionP0A796240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1253) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339241, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339241) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339241, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339241) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), '')))), '[^-]', ''))) AS ?step2254) .
BIND(((?step2254 + ?targetMotifMatchRegionMatchBeginPositionMF_00339242) - 1) AS ?thisPositionOn63) .
BIND(?this AS ?pfs1t255) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX][ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn62, (?thisPositionOn63 - ?thisPositionOn62)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch260 faldo:location ?templateMotifSequenceMatchRegionP0A796261 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A796263 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A796MF_00339256 .
?templateMotifSequenceMatchRegionP0A796261 faldo:begin ?templateMotifSequenceMatchBeginP0A796262 .
?templateMotifSequenceMatchBeginP0A796262 faldo:position ?templateMotifSequenceMatchBeginPositionP0A796257 ;
faldo:reference isoform:P0A796-1 .
?templateMotifSequenceProfileAlignmentOperationP0A796263 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
?targetMotifMatch264 faldo:location ?targetMotifMatchRegionMatch265 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00339267 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A796MF_00339258 .
?targetMotifMatchRegionMatch265 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00339266 .
?targetMotifMatchRegionMatchBeginMF_00339266 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00339259 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00339267 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339256, 1, (STRLEN(?templateMotifCigarP0A796MF_00339256) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339256, CONCAT('^(?:-*[^-]){', STR(((214 - ?templateMotifSequenceMatchBeginPositionP0A796257) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1268) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339258, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339258) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339258, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339258) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), '')))), '[^-]', ''))) AS ?step2269) .
BIND(((?step2269 + ?targetMotifMatchRegionMatchBeginPositionMF_00339259) - 1) AS ?thisPositionOn69) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339256, 1, (STRLEN(?templateMotifCigarP0A796MF_00339256) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339256, CONCAT('^(?:-*[^-]){', STR(((216 - ?templateMotifSequenceMatchBeginPositionP0A796257) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1270) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339258, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339258) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339258, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339258) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1270), '}'), '')))), '[^-]', ''))) AS ?step2271) .
BIND(((?step2271 + ?targetMotifMatchRegionMatchBeginPositionMF_00339259) - 1) AS ?thisPositionOn70) .
BIND(?this AS ?pfs1t272) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn69))) AS ?pfsb66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfse67) .
FILTER (REGEX('K[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)', SUBSTR(?thisSequenceValue, ?thisPositionOn69, (?thisPositionOn70 - ?thisPositionOn69)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a65')) AS ?annotation65) .
BIND(?this AS ?pfs64) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch277 faldo:location ?templateMotifSequenceMatchRegionP0A796278 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A796280 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A796MF_00339273 .
?templateMotifSequenceMatchRegionP0A796278 faldo:begin ?templateMotifSequenceMatchBeginP0A796279 .
?templateMotifSequenceMatchBeginP0A796279 faldo:position ?templateMotifSequenceMatchBeginPositionP0A796274 ;
faldo:reference isoform:P0A796-1 .
?templateMotifSequenceProfileAlignmentOperationP0A796280 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
?targetMotifMatch281 faldo:location ?targetMotifMatchRegionMatch282 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00339284 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A796MF_00339275 .
?targetMotifMatchRegionMatch282 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00339283 .
?targetMotifMatchRegionMatchBeginMF_00339283 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00339276 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00339284 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339273, 1, (STRLEN(?templateMotifCigarP0A796MF_00339273) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339273, CONCAT('^(?:-*[^-]){', STR(((250 - ?templateMotifSequenceMatchBeginPositionP0A796274) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1285) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339275, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339275) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1285), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339275, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339275) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1285), '}'), '')))), '[^-]', ''))) AS ?step2286) .
BIND(((?step2286 + ?targetMotifMatchRegionMatchBeginPositionMF_00339276) - 1) AS ?thisPositionOn77) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339273, 1, (STRLEN(?templateMotifCigarP0A796MF_00339273) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339273, CONCAT('^(?:-*[^-]){', STR(((253 - ?templateMotifSequenceMatchBeginPositionP0A796274) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1287) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339275, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339275) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1287), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339275, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339275) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339275, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1287), '}'), '')))), '[^-]', ''))) AS ?step2288) .
BIND(((?step2288 + ?targetMotifMatchRegionMatchBeginPositionMF_00339276) - 1) AS ?thisPositionOn78) .
BIND(?this AS ?pfs1t289) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse74) .
FILTER (REGEX('[HY][ARNDCQEGHILKMFPSTWYVBZJUOX]{2)R', SUBSTR(?thisSequenceValue, ?thisPositionOn77, (?thisPositionOn78 - ?thisPositionOn77)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a72')) AS ?annotation72) .
BIND(?this AS ?pfs71) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch294 faldo:location ?templateMotifSequenceMatchRegionP0A796295 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A796297 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A796MF_00339290 .
?templateMotifSequenceMatchRegionP0A796295 faldo:begin ?templateMotifSequenceMatchBeginP0A796296 .
?templateMotifSequenceMatchBeginP0A796296 faldo:position ?templateMotifSequenceMatchBeginPositionP0A796291 ;
faldo:reference isoform:P0A796-1 .
?templateMotifSequenceProfileAlignmentOperationP0A796297 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
?targetMotifMatch298 faldo:location ?targetMotifMatchRegionMatch299 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00339301 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A796MF_00339292 .
?targetMotifMatchRegionMatch299 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00339300 .
?targetMotifMatchRegionMatchBeginMF_00339300 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00339293 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00339301 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339290, 1, (STRLEN(?templateMotifCigarP0A796MF_00339290) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339290, CONCAT('^(?:-*[^-]){', STR(((128 - ?templateMotifSequenceMatchBeginPositionP0A796291) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1302) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339292, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339292) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1302), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339292, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339292) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339292, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1302), '}'), '')))), '[^-]', ''))) AS ?step2303) .
BIND(((?step2303 + ?targetMotifMatchRegionMatchBeginPositionMF_00339293) - 1) AS ?thisPositionOn83) .
BIND(?thisPositionOn83 AS ?thisPositionOn84) .
BIND(?this AS ?pfs1t304) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfsb81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfse82) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn83, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a80')) AS ?annotation80) .
BIND(?this AS ?pfs79) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch309 faldo:location ?templateMotifSequenceMatchRegionP0A796310 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A796312 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A796MF_00339305 .
?templateMotifSequenceMatchRegionP0A796310 faldo:begin ?templateMotifSequenceMatchBeginP0A796311 .
?templateMotifSequenceMatchBeginP0A796311 faldo:position ?templateMotifSequenceMatchBeginPositionP0A796306 ;
faldo:reference isoform:P0A796-1 .
?templateMotifSequenceProfileAlignmentOperationP0A796312 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
?targetMotifMatch313 faldo:location ?targetMotifMatchRegionMatch314 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00339316 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A796MF_00339307 .
?targetMotifMatchRegionMatch314 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00339315 .
?targetMotifMatchRegionMatchBeginMF_00339315 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00339308 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00339316 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339305, 1, (STRLEN(?templateMotifCigarP0A796MF_00339305) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339305, CONCAT('^(?:-*[^-]){', STR(((104 - ?templateMotifSequenceMatchBeginPositionP0A796306) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1317) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339307, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339307) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339307, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1317), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339307, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339307) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339307, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1317), '}'), '')))), '[^-]', ''))) AS ?step2318) .
BIND(((?step2318 + ?targetMotifMatchRegionMatchBeginPositionMF_00339308) - 1) AS ?thisPositionOn90) .
BIND(?thisPositionOn90 AS ?thisPositionOn91) .
BIND(?this AS ?pfs1t319) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfsb87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfse88) .
FILTER (REGEX('[DEN]', SUBSTR(?thisSequenceValue, ?thisPositionOn90, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a86')) AS ?annotation86) .
BIND(?this AS ?pfs85) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch324 faldo:location ?templateMotifSequenceMatchRegionP0A796325 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A796327 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A796MF_00339320 .
?templateMotifSequenceMatchRegionP0A796325 faldo:begin ?templateMotifSequenceMatchBeginP0A796326 .
?templateMotifSequenceMatchBeginP0A796326 faldo:position ?templateMotifSequenceMatchBeginPositionP0A796321 ;
faldo:reference isoform:P0A796-1 .
?templateMotifSequenceProfileAlignmentOperationP0A796327 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
?targetMotifMatch328 faldo:location ?targetMotifMatchRegionMatch329 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00339331 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A796MF_00339322 .
?targetMotifMatchRegionMatch329 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00339330 .
?targetMotifMatchRegionMatchBeginMF_00339330 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00339323 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00339331 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339320, 1, (STRLEN(?templateMotifCigarP0A796MF_00339320) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339320, CONCAT('^(?:-*[^-]){', STR(((12 - ?templateMotifSequenceMatchBeginPositionP0A796321) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1332) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339322, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339322) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339322, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1332), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339322, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339322) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339322, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1332), '}'), '')))), '[^-]', ''))) AS ?step2333) .
BIND(((?step2333 + ?targetMotifMatchRegionMatchBeginPositionMF_00339323) - 1) AS ?thisPositionOn97) .
BIND(?thisPositionOn97 AS ?thisPositionOn98) .
BIND(?this AS ?pfs1t334) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfsb94) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfse95) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn97, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a93')) AS ?annotation93) .
BIND(?this AS ?pfs92) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch339 faldo:location ?templateMotifSequenceMatchRegionP0A796340 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A796342 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A796MF_00339335 .
?templateMotifSequenceMatchRegionP0A796340 faldo:begin ?templateMotifSequenceMatchBeginP0A796341 .
?templateMotifSequenceMatchBeginP0A796341 faldo:position ?templateMotifSequenceMatchBeginPositionP0A796336 ;
faldo:reference isoform:P0A796-1 .
?templateMotifSequenceProfileAlignmentOperationP0A796342 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
?targetMotifMatch343 faldo:location ?targetMotifMatchRegionMatch344 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00339346 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A796MF_00339337 .
?targetMotifMatchRegionMatch344 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00339345 .
?targetMotifMatchRegionMatchBeginMF_00339345 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00339338 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00339346 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339335, 1, (STRLEN(?templateMotifCigarP0A796MF_00339335) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339335, CONCAT('^(?:-*[^-]){', STR(((155 - ?templateMotifSequenceMatchBeginPositionP0A796336) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1347) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339337, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339337) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339337, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1347), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339337, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339337) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339337, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1347), '}'), '')))), '[^-]', ''))) AS ?step2348) .
BIND(((?step2348 + ?targetMotifMatchRegionMatchBeginPositionMF_00339338) - 1) AS ?thisPositionOn104) .
BIND(?thisPositionOn104 AS ?thisPositionOn105) .
BIND(?this AS ?pfs1t349) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfsb101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfse102) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn104, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a100')) AS ?annotation100) .
BIND(?this AS ?pfs99) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch354 faldo:location ?templateMotifSequenceMatchRegionP0A796355 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A796357 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A796MF_00339350 .
?templateMotifSequenceMatchRegionP0A796355 faldo:begin ?templateMotifSequenceMatchBeginP0A796356 .
?templateMotifSequenceMatchBeginP0A796356 faldo:position ?templateMotifSequenceMatchBeginPositionP0A796351 ;
faldo:reference isoform:P0A796-1 .
?templateMotifSequenceProfileAlignmentOperationP0A796357 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
?targetMotifMatch358 faldo:location ?targetMotifMatchRegionMatch359 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00339361 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A796MF_00339352 .
?targetMotifMatchRegionMatch359 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00339360 .
?targetMotifMatchRegionMatchBeginMF_00339360 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00339353 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00339361 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339350, 1, (STRLEN(?templateMotifCigarP0A796MF_00339350) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339350, CONCAT('^(?:-*[^-]){', STR(((163 - ?templateMotifSequenceMatchBeginPositionP0A796351) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1362) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339352, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339352) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339352, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1362), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339352, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339352) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339352, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1362), '}'), '')))), '[^-]', ''))) AS ?step2363) .
BIND(((?step2363 + ?targetMotifMatchRegionMatchBeginPositionMF_00339353) - 1) AS ?thisPositionOn112) .
BIND(?thisPositionOn112 AS ?thisPositionOn113) .
BIND(?this AS ?pfs1t364) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfsb108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfse109) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn112, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a107')) AS ?annotation107) .
BIND(?this AS ?pfs106) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch369 faldo:location ?templateMotifSequenceMatchRegionP0A796370 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A796372 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A796MF_00339365 .
?templateMotifSequenceMatchRegionP0A796370 faldo:begin ?templateMotifSequenceMatchBeginP0A796371 .
?templateMotifSequenceMatchBeginP0A796371 faldo:position ?templateMotifSequenceMatchBeginPositionP0A796366 ;
faldo:reference isoform:P0A796-1 .
?templateMotifSequenceProfileAlignmentOperationP0A796372 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
?targetMotifMatch373 faldo:location ?targetMotifMatchRegionMatch374 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00339376 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A796MF_00339367 .
?targetMotifMatchRegionMatch374 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00339375 .
?targetMotifMatchRegionMatchBeginMF_00339375 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00339368 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00339376 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339365, 1, (STRLEN(?templateMotifCigarP0A796MF_00339365) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339365, CONCAT('^(?:-*[^-]){', STR(((212 - ?templateMotifSequenceMatchBeginPositionP0A796366) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1377) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339367, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339367) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1377), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339367, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339367) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339367, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1377), '}'), '')))), '[^-]', ''))) AS ?step2378) .
BIND(((?step2378 + ?targetMotifMatchRegionMatchBeginPositionMF_00339368) - 1) AS ?thisPositionOn119) .
BIND(?thisPositionOn119 AS ?thisPositionOn120) .
BIND(?this AS ?pfs1t379) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn119))) AS ?pfsb116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfse117) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn119, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a115')) AS ?annotation115) .
BIND(?this AS ?pfs114) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch384 faldo:location ?templateMotifSequenceMatchRegionP0A796385 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A796387 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A796MF_00339380 .
?templateMotifSequenceMatchRegionP0A796385 faldo:begin ?templateMotifSequenceMatchBeginP0A796386 .
?templateMotifSequenceMatchBeginP0A796386 faldo:position ?templateMotifSequenceMatchBeginPositionP0A796381 ;
faldo:reference isoform:P0A796-1 .
?templateMotifSequenceProfileAlignmentOperationP0A796387 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
?targetMotifMatch388 faldo:location ?targetMotifMatchRegionMatch389 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00339391 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A796MF_00339382 .
?targetMotifMatchRegionMatch389 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00339390 .
?targetMotifMatchRegionMatchBeginMF_00339390 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00339383 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00339391 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339380, 1, (STRLEN(?templateMotifCigarP0A796MF_00339380) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339380, CONCAT('^(?:-*[^-]){', STR(((223 - ?templateMotifSequenceMatchBeginPositionP0A796381) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1392) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339382, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339382) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339382, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1392), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339382, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339382) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339382, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1392), '}'), '')))), '[^-]', ''))) AS ?step2393) .
BIND(((?step2393 + ?targetMotifMatchRegionMatchBeginPositionMF_00339383) - 1) AS ?thisPositionOn127) .
BIND(?thisPositionOn127 AS ?thisPositionOn128) .
BIND(?this AS ?pfs1t394) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfsb123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn128))) AS ?pfse124) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn127, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a122')) AS ?annotation122) .
BIND(?this AS ?pfs121) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch399 faldo:location ?templateMotifSequenceMatchRegionP0A796400 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A796402 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A796MF_00339395 .
?templateMotifSequenceMatchRegionP0A796400 faldo:begin ?templateMotifSequenceMatchBeginP0A796401 .
?templateMotifSequenceMatchBeginP0A796401 faldo:position ?templateMotifSequenceMatchBeginPositionP0A796396 ;
faldo:reference isoform:P0A796-1 .
?templateMotifSequenceProfileAlignmentOperationP0A796402 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
?targetMotifMatch403 faldo:location ?targetMotifMatchRegionMatch404 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00339406 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A796MF_00339397 .
?targetMotifMatchRegionMatch404 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00339405 .
?targetMotifMatchRegionMatchBeginMF_00339405 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00339398 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00339406 edam:has_input signature:MF_00339 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A796MF_00339395, 1, (STRLEN(?templateMotifCigarP0A796MF_00339395) - STRLEN(REPLACE(?templateMotifCigarP0A796MF_00339395, CONCAT('^(?:-*[^-]){', STR(((244 - ?templateMotifSequenceMatchBeginPositionP0A796396) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1407) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A796MF_00339397, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339397) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339397, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1407), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A796MF_00339397, 1, (STRLEN(?targetMotifMatchCigarP0A796MF_00339397) - STRLEN(REPLACE(?targetMotifMatchCigarP0A796MF_00339397, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1407), '}'), '')))), '[^-]', ''))) AS ?step2408) .
BIND(((?step2408 + ?targetMotifMatchRegionMatchBeginPositionMF_00339398) - 1) AS ?thisPositionOn135) .
BIND(?thisPositionOn135 AS ?thisPositionOn136) .
BIND(?this AS ?pfs1t409) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn135))) AS ?pfsb131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn136))) AS ?pfse132) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn135, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00339a130')) AS ?annotation130) .
BIND(?this AS ?pfs129) .
}
}
"xsd:string |
