| http://purl.uniprot.org/unirules/MF_00394#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:155170 up:source unirule:MF_00394 .
_:155171 up:source unirule:MF_00394 .
_:155172 up:source unirule:MF_00394 .
_:155173 up:source unirule:MF_00394 .
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_:155180 up:source unirule:MF_00394 .
_:155181 up:source unirule:MF_00394 .
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_:155185 up:source unirule:MF_00394 .
_:155186 up:source unirule:MF_00394 .
_:155187 up:source unirule:MF_00394 .
_:155188 up:source unirule:MF_00394 .
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_:155190 up:source unirule:MF_00394 .
_:155191 up:source unirule:MF_00394 .
_:155192 up:source unirule:MF_00394 .
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_:155194 up:source unirule:MF_00394 .
_:155195 up:source unirule:MF_00394 .
_:155196 up:source unirule:MF_00394 .
_:155197 up:source unirule:MF_00394 .
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_:155207 up:source unirule:MF_00394 .
_:155208 up:source unirule:MF_00394 .
_:155209 up:source unirule:MF_00394 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation10 ;
up:classifiedWith GO:0005737 ,
GO:0006650 ,
GO:0046167 ,
GO:0047952 ,
keyword:520 ,
keyword:521 ,
keyword:547 ,
keyword:560 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.1.1.94' ;
up:fullName 'Glycerol-3-phosphate dehydrogenase [NAD(P)+]' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'NAD(P)(+)-dependent glycerol-3-phosphate dehydrogenase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'NAD(P)H-dependent dihydroxyacetone-phosphate reductase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'gpsA' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 a up:Subcellular_Location_Annotation .
?annotation8li9 up:cellularComponent .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.' .
?case12 up:classifiedWith keyword:1208 ,
keyword:443 ,
keyword:444 ,
keyword:594 .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:57783 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:57783 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:57783 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf chebi:57783 .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:57783 .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:57783 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn66 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf chebi:57597 .
?pfs68 up:annotation ?annotation69 .
?annotation69 faldo:begin ?pfsb70 ;
faldo:end ?pfse71 ;
up:ligand ?ligand72 ;
rdf:type up:Binding_Site_Annotation .
?pfsb70 faldo:position ?thisPositionOn73 ;
rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?ligand72 rdfs:subClassOf chebi:57597 .
?pfs75 up:annotation ?annotation76 .
?annotation76 faldo:begin ?pfsb77 ;
faldo:end ?pfse78 ;
up:ligand ?ligand79 ;
rdf:type up:Binding_Site_Annotation .
?pfsb77 faldo:position ?thisPositionOn80 ;
rdf:type faldo:ExactPosition .
?pfse78 faldo:position ?thisPositionOn81 ;
rdf:type faldo:ExactPosition .
?ligand79 rdfs:subClassOf chebi:57597 .
?pfs82 up:annotation ?annotation83 .
?annotation83 faldo:begin ?pfsb84 ;
faldo:end ?pfse85 ;
up:ligand ?ligand86 ;
rdf:type up:Binding_Site_Annotation .
?pfsb84 faldo:position ?thisPositionOn87 ;
rdf:type faldo:ExactPosition .
?pfse85 faldo:position ?thisPositionOn88 ;
rdf:type faldo:ExactPosition .
?ligand86 rdfs:subClassOf chebi:57783 .
?pfs89 up:annotation ?annotation90 .
?annotation90 faldo:begin ?pfsb91 ;
faldo:end ?pfse92 ;
up:ligand ?ligand93 ;
rdf:type up:Binding_Site_Annotation .
?pfsb91 faldo:position ?thisPositionOn94 ;
rdf:type faldo:ExactPosition .
?pfse92 faldo:position ?thisPositionOn95 ;
rdf:type faldo:ExactPosition .
?ligand93 rdfs:subClassOf chebi:57597 .
?pfs96 up:annotation ?annotation97 .
?annotation97 faldo:begin ?pfsb98 ;
faldo:end ?pfse99 ;
up:ligand ?ligand100 ;
rdf:type up:Binding_Site_Annotation .
?pfsb98 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?pfse99 faldo:position ?thisPositionOn102 ;
rdf:type faldo:ExactPosition .
?ligand100 rdfs:subClassOf chebi:57597 .
?pfs103 up:annotation ?annotation104 .
?annotation104 faldo:begin ?pfsb105 ;
faldo:end ?pfse106 ;
up:ligand ?ligand107 ;
rdf:type up:Binding_Site_Annotation .
?pfsb105 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?pfse106 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?ligand107 rdfs:subClassOf chebi:57597 .
?pfs110 up:annotation ?annotation111 .
?annotation111 faldo:begin ?pfsb112 ;
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up:ligand ?ligand114 ;
rdf:type up:Binding_Site_Annotation .
?pfsb112 faldo:position ?thisPositionOn115 ;
rdf:type faldo:ExactPosition .
?pfse113 faldo:position ?thisPositionOn116 ;
rdf:type faldo:ExactPosition .
?ligand114 rdfs:subClassOf chebi:57783 .
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up:ligand ?ligand121 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
?pfse120 faldo:position ?thisPositionOn123 ;
rdf:type faldo:ExactPosition .
?ligand121 rdfs:subClassOf chebi:57597 .
?pfs124 up:annotation ?annotation125 .
?annotation125 faldo:begin ?pfsb126 ;
faldo:end ?pfse127 ;
up:ligand ?ligand128 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
?pfse127 faldo:position ?thisPositionOn130 ;
rdf:type faldo:ExactPosition .
?ligand128 rdfs:subClassOf chebi:57597 .
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faldo:end ?pfse134 ;
up:ligand ?ligand135 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
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rdf:type faldo:ExactPosition .
?ligand135 rdfs:subClassOf chebi:57783 .
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?annotation139 faldo:begin ?pfsb140 ;
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up:ligand ?ligand142 ;
rdf:type up:Binding_Site_Annotation .
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rdf:type faldo:ExactPosition .
?pfse141 faldo:position ?thisPositionOn144 ;
rdf:type faldo:ExactPosition .
?ligand142 rdfs:subClassOf chebi:57783 .
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rdf:subject ?gene3 ;
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rdf:subject ?this ;
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rdf:subject ?this ;
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rdf:subject ?this ;
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rdf:object GO:0047952 .
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rdf:subject ?this ;
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rdf:subject ?this ;
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rdf:subject ?this ;
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rdf:subject ?pfs89 ;
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rdf:predicate up:annotation ;
rdf:object ?annotation111 .
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rdf:subject ?pfs110 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs117 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs131 ;
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rdf:subject ?pfs138 ;
rdf:predicate up:annotation ;
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rdf:subject ?pfs138 ;
rdf:predicate up:annotation ;
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}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00394
#Rule MF_00394 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon145 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00394 .
?thisOrganism rdfs:subClassOf+ ?supertaxon145 .
BIND(URI(CONCAT(STR(?this), '#MF_00394a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch150 faldo:location ?templateMotifSequenceMatchRegionA0A0F6AK91151 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91153 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0F6AK91MF_00394146 .
?templateMotifSequenceMatchRegionA0A0F6AK91151 faldo:begin ?templateMotifSequenceMatchBeginA0A0F6AK91152 .
?templateMotifSequenceMatchBeginA0A0F6AK91152 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0F6AK91147 ;
faldo:reference isoform:A0A0F6AK91-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91153 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
?targetMotifMatch154 faldo:location ?targetMotifMatchRegionMatch155 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00394157 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0F6AK91MF_00394148 .
?targetMotifMatchRegionMatch155 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00394156 .
?targetMotifMatchRegionMatchBeginMF_00394156 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00394149 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00394157 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0F6AK91MF_00394146, 1, (STRLEN(?templateMotifCigarA0A0F6AK91MF_00394146) - STRLEN(REPLACE(?templateMotifCigarA0A0F6AK91MF_00394146, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionA0A0F6AK91147) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394148, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394148) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394148, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394148) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) .
BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_00394149) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t160) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch165 faldo:location ?templateMotifSequenceMatchRegionA0A0F6AK91166 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91168 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0F6AK91MF_00394161 .
?templateMotifSequenceMatchRegionA0A0F6AK91166 faldo:begin ?templateMotifSequenceMatchBeginA0A0F6AK91167 .
?templateMotifSequenceMatchBeginA0A0F6AK91167 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0F6AK91162 ;
faldo:reference isoform:A0A0F6AK91-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91168 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
?targetMotifMatch169 faldo:location ?targetMotifMatchRegionMatch170 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00394172 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0F6AK91MF_00394163 .
?targetMotifMatchRegionMatch170 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00394171 .
?targetMotifMatchRegionMatchBeginMF_00394171 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00394164 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00394172 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0F6AK91MF_00394161, 1, (STRLEN(?templateMotifCigarA0A0F6AK91MF_00394161) - STRLEN(REPLACE(?templateMotifCigarA0A0F6AK91MF_00394161, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionA0A0F6AK91162) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394163, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394163) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394163, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394163) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394163, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1173), '}'), '')))), '[^-]', ''))) AS ?step2174) .
BIND(((?step2174 + ?targetMotifMatchRegionMatchBeginPositionMF_00394164) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t175) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch180 faldo:location ?templateMotifSequenceMatchRegionA0A0F6AK91181 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91183 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0F6AK91MF_00394176 .
?templateMotifSequenceMatchRegionA0A0F6AK91181 faldo:begin ?templateMotifSequenceMatchBeginA0A0F6AK91182 .
?templateMotifSequenceMatchBeginA0A0F6AK91182 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0F6AK91177 ;
faldo:reference isoform:A0A0F6AK91-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91183 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
?targetMotifMatch184 faldo:location ?targetMotifMatchRegionMatch185 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00394187 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0F6AK91MF_00394178 .
?targetMotifMatchRegionMatch185 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00394186 .
?targetMotifMatchRegionMatchBeginMF_00394186 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00394179 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00394187 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0F6AK91MF_00394176, 1, (STRLEN(?templateMotifCigarA0A0F6AK91MF_00394176) - STRLEN(REPLACE(?templateMotifCigarA0A0F6AK91MF_00394176, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionA0A0F6AK91177) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394178, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394178) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394178, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394178) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394178, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1188), '}'), '')))), '[^-]', ''))) AS ?step2189) .
BIND(((?step2189 + ?targetMotifMatchRegionMatchBeginPositionMF_00394179) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t190) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER (REGEX('[WYF]', SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch195 faldo:location ?templateMotifSequenceMatchRegionA0A0F6AK91196 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91198 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0F6AK91MF_00394191 .
?templateMotifSequenceMatchRegionA0A0F6AK91196 faldo:begin ?templateMotifSequenceMatchBeginA0A0F6AK91197 .
?templateMotifSequenceMatchBeginA0A0F6AK91197 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0F6AK91192 ;
faldo:reference isoform:A0A0F6AK91-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91198 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
?targetMotifMatch199 faldo:location ?targetMotifMatchRegionMatch200 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00394202 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0F6AK91MF_00394193 .
?targetMotifMatchRegionMatch200 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00394201 .
?targetMotifMatchRegionMatchBeginMF_00394201 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00394194 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00394202 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0F6AK91MF_00394191, 1, (STRLEN(?templateMotifCigarA0A0F6AK91MF_00394191) - STRLEN(REPLACE(?templateMotifCigarA0A0F6AK91MF_00394191, CONCAT('^(?:-*[^-]){', STR(((31 - ?templateMotifSequenceMatchBeginPositionA0A0F6AK91192) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1203) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394193, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394193) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394193, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394193) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394193, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1203), '}'), '')))), '[^-]', ''))) AS ?step2204) .
BIND(((?step2204 + ?targetMotifMatchRegionMatchBeginPositionMF_00394194) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t205) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER (REGEX('[RHK]', SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch210 faldo:location ?templateMotifSequenceMatchRegionA0A0F6AK91211 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91213 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0F6AK91MF_00394206 .
?templateMotifSequenceMatchRegionA0A0F6AK91211 faldo:begin ?templateMotifSequenceMatchBeginA0A0F6AK91212 .
?templateMotifSequenceMatchBeginA0A0F6AK91212 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0F6AK91207 ;
faldo:reference isoform:A0A0F6AK91-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91213 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
?targetMotifMatch214 faldo:location ?targetMotifMatchRegionMatch215 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00394217 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0F6AK91MF_00394208 .
?targetMotifMatchRegionMatch215 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00394216 .
?targetMotifMatchRegionMatchBeginMF_00394216 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00394209 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00394217 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0F6AK91MF_00394206, 1, (STRLEN(?templateMotifCigarA0A0F6AK91MF_00394206) - STRLEN(REPLACE(?templateMotifCigarA0A0F6AK91MF_00394206, CONCAT('^(?:-*[^-]){', STR(((32 - ?templateMotifSequenceMatchBeginPositionA0A0F6AK91207) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1218) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394208, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394208) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394208, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394208) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394208, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1218), '}'), '')))), '[^-]', ''))) AS ?step2219) .
BIND(((?step2219 + ?targetMotifMatchRegionMatchBeginPositionMF_00394209) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t220) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) .
FILTER (REGEX('[RHK]', SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch225 faldo:location ?templateMotifSequenceMatchRegionA0A0F6AK91226 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91228 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0F6AK91MF_00394221 .
?templateMotifSequenceMatchRegionA0A0F6AK91226 faldo:begin ?templateMotifSequenceMatchBeginA0A0F6AK91227 .
?templateMotifSequenceMatchBeginA0A0F6AK91227 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0F6AK91222 ;
faldo:reference isoform:A0A0F6AK91-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91228 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
?targetMotifMatch229 faldo:location ?targetMotifMatchRegionMatch230 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00394232 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0F6AK91MF_00394223 .
?targetMotifMatchRegionMatch230 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00394231 .
?targetMotifMatchRegionMatchBeginMF_00394231 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00394224 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00394232 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0F6AK91MF_00394221, 1, (STRLEN(?templateMotifCigarA0A0F6AK91MF_00394221) - STRLEN(REPLACE(?templateMotifCigarA0A0F6AK91MF_00394221, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionA0A0F6AK91222) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1233) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394223, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394223) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394223, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394223) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394223, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1233), '}'), '')))), '[^-]', ''))) AS ?step2234) .
BIND(((?step2234 + ?targetMotifMatchRegionMatchBeginPositionMF_00394224) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t235) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch240 faldo:location ?templateMotifSequenceMatchRegionA0A0F6AK91241 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91243 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0F6AK91MF_00394236 .
?templateMotifSequenceMatchRegionA0A0F6AK91241 faldo:begin ?templateMotifSequenceMatchBeginA0A0F6AK91242 .
?templateMotifSequenceMatchBeginA0A0F6AK91242 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0F6AK91237 ;
faldo:reference isoform:A0A0F6AK91-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91243 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
?targetMotifMatch244 faldo:location ?targetMotifMatchRegionMatch245 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00394247 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0F6AK91MF_00394238 .
?targetMotifMatchRegionMatch245 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00394246 .
?targetMotifMatchRegionMatchBeginMF_00394246 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00394239 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00394247 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0F6AK91MF_00394236, 1, (STRLEN(?templateMotifCigarA0A0F6AK91MF_00394236) - STRLEN(REPLACE(?templateMotifCigarA0A0F6AK91MF_00394236, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionA0A0F6AK91237) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1248) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394238, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394238) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394238, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394238) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394238, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1248), '}'), '')))), '[^-]', ''))) AS ?step2249) .
BIND(((?step2249 + ?targetMotifMatchRegionMatchBeginPositionMF_00394239) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t250) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch255 faldo:location ?templateMotifSequenceMatchRegionA0A0F6AK91256 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91258 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0F6AK91MF_00394251 .
?templateMotifSequenceMatchRegionA0A0F6AK91256 faldo:begin ?templateMotifSequenceMatchBeginA0A0F6AK91257 .
?templateMotifSequenceMatchBeginA0A0F6AK91257 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0F6AK91252 ;
faldo:reference isoform:A0A0F6AK91-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91258 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
?targetMotifMatch259 faldo:location ?targetMotifMatchRegionMatch260 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00394262 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0F6AK91MF_00394253 .
?targetMotifMatchRegionMatch260 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00394261 .
?targetMotifMatchRegionMatchBeginMF_00394261 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00394254 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00394262 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0F6AK91MF_00394251, 1, (STRLEN(?templateMotifCigarA0A0F6AK91MF_00394251) - STRLEN(REPLACE(?templateMotifCigarA0A0F6AK91MF_00394251, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionA0A0F6AK91252) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1263) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394253, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394253) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394253, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394253) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1263), '}'), '')))), '[^-]', ''))) AS ?step2264) .
BIND(((?step2264 + ?targetMotifMatchRegionMatchBeginPositionMF_00394254) - 1) AS ?thisPositionOn66) .
BIND(?thisPositionOn66 AS ?thisPositionOn67) .
BIND(?this AS ?pfs1t265) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn66))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfse64) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn66, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch270 faldo:location ?templateMotifSequenceMatchRegionA0A0F6AK91271 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91273 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0F6AK91MF_00394266 .
?templateMotifSequenceMatchRegionA0A0F6AK91271 faldo:begin ?templateMotifSequenceMatchBeginA0A0F6AK91272 .
?templateMotifSequenceMatchBeginA0A0F6AK91272 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0F6AK91267 ;
faldo:reference isoform:A0A0F6AK91-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91273 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
?targetMotifMatch274 faldo:location ?targetMotifMatchRegionMatch275 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00394277 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0F6AK91MF_00394268 .
?targetMotifMatchRegionMatch275 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00394276 .
?targetMotifMatchRegionMatchBeginMF_00394276 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00394269 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00394277 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0F6AK91MF_00394266, 1, (STRLEN(?templateMotifCigarA0A0F6AK91MF_00394266) - STRLEN(REPLACE(?templateMotifCigarA0A0F6AK91MF_00394266, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionA0A0F6AK91267) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1278) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394268, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394268) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394268, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394268) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394268, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1278), '}'), '')))), '[^-]', ''))) AS ?step2279) .
BIND(((?step2279 + ?targetMotifMatchRegionMatchBeginPositionMF_00394269) - 1) AS ?thisPositionOn73) .
BIND(?thisPositionOn73 AS ?thisPositionOn74) .
BIND(?this AS ?pfs1t280) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn73))) AS ?pfsb70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn74))) AS ?pfse71) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn73, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a69')) AS ?annotation69) .
BIND(?this AS ?pfs68) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch285 faldo:location ?templateMotifSequenceMatchRegionA0A0F6AK91286 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91288 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0F6AK91MF_00394281 .
?templateMotifSequenceMatchRegionA0A0F6AK91286 faldo:begin ?templateMotifSequenceMatchBeginA0A0F6AK91287 .
?templateMotifSequenceMatchBeginA0A0F6AK91287 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0F6AK91282 ;
faldo:reference isoform:A0A0F6AK91-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91288 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
?targetMotifMatch289 faldo:location ?targetMotifMatchRegionMatch290 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00394292 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0F6AK91MF_00394283 .
?targetMotifMatchRegionMatch290 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00394291 .
?targetMotifMatchRegionMatchBeginMF_00394291 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00394284 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00394292 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0F6AK91MF_00394281, 1, (STRLEN(?templateMotifCigarA0A0F6AK91MF_00394281) - STRLEN(REPLACE(?templateMotifCigarA0A0F6AK91MF_00394281, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionA0A0F6AK91282) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1293) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394283, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394283) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1293), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394283, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394283) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394283, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1293), '}'), '')))), '[^-]', ''))) AS ?step2294) .
BIND(((?step2294 + ?targetMotifMatchRegionMatchBeginPositionMF_00394284) - 1) AS ?thisPositionOn80) .
BIND(?thisPositionOn80 AS ?thisPositionOn81) .
BIND(?this AS ?pfs1t295) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn80))) AS ?pfsb77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn81))) AS ?pfse78) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn80, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a76')) AS ?annotation76) .
BIND(?this AS ?pfs75) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch300 faldo:location ?templateMotifSequenceMatchRegionA0A0F6AK91301 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91303 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0F6AK91MF_00394296 .
?templateMotifSequenceMatchRegionA0A0F6AK91301 faldo:begin ?templateMotifSequenceMatchBeginA0A0F6AK91302 .
?templateMotifSequenceMatchBeginA0A0F6AK91302 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0F6AK91297 ;
faldo:reference isoform:A0A0F6AK91-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91303 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
?targetMotifMatch304 faldo:location ?targetMotifMatchRegionMatch305 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00394307 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0F6AK91MF_00394298 .
?targetMotifMatchRegionMatch305 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00394306 .
?targetMotifMatchRegionMatchBeginMF_00394306 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00394299 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00394307 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0F6AK91MF_00394296, 1, (STRLEN(?templateMotifCigarA0A0F6AK91MF_00394296) - STRLEN(REPLACE(?templateMotifCigarA0A0F6AK91MF_00394296, CONCAT('^(?:-*[^-]){', STR(((129 - ?templateMotifSequenceMatchBeginPositionA0A0F6AK91297) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1308) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394298, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394298) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1308), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394298, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394298) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394298, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1308), '}'), '')))), '[^-]', ''))) AS ?step2309) .
BIND(((?step2309 + ?targetMotifMatchRegionMatchBeginPositionMF_00394299) - 1) AS ?thisPositionOn87) .
BIND(?thisPositionOn87 AS ?thisPositionOn88) .
BIND(?this AS ?pfs1t310) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn87))) AS ?pfsb84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn88))) AS ?pfse85) .
FILTER (REGEX('[AGS]', SUBSTR(?thisSequenceValue, ?thisPositionOn87, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a83')) AS ?annotation83) .
BIND(?this AS ?pfs82) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch315 faldo:location ?templateMotifSequenceMatchRegionA0A0F6AK91316 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91318 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0F6AK91MF_00394311 .
?templateMotifSequenceMatchRegionA0A0F6AK91316 faldo:begin ?templateMotifSequenceMatchBeginA0A0F6AK91317 .
?templateMotifSequenceMatchBeginA0A0F6AK91317 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0F6AK91312 ;
faldo:reference isoform:A0A0F6AK91-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91318 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
?targetMotifMatch319 faldo:location ?targetMotifMatchRegionMatch320 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00394322 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0F6AK91MF_00394313 .
?targetMotifMatchRegionMatch320 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00394321 .
?targetMotifMatchRegionMatchBeginMF_00394321 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00394314 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00394322 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0F6AK91MF_00394311, 1, (STRLEN(?templateMotifCigarA0A0F6AK91MF_00394311) - STRLEN(REPLACE(?templateMotifCigarA0A0F6AK91MF_00394311, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionA0A0F6AK91312) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1323) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394313, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394313) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394313, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1323), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394313, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394313) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394313, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1323), '}'), '')))), '[^-]', ''))) AS ?step2324) .
BIND(((?step2324 + ?targetMotifMatchRegionMatchBeginPositionMF_00394314) - 1) AS ?thisPositionOn94) .
BIND(?thisPositionOn94 AS ?thisPositionOn95) .
BIND(?this AS ?pfs1t325) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn94))) AS ?pfsb91) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn95))) AS ?pfse92) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn94, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a90')) AS ?annotation90) .
BIND(?this AS ?pfs89) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch330 faldo:location ?templateMotifSequenceMatchRegionA0A0F6AK91331 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91333 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0F6AK91MF_00394326 .
?templateMotifSequenceMatchRegionA0A0F6AK91331 faldo:begin ?templateMotifSequenceMatchBeginA0A0F6AK91332 .
?templateMotifSequenceMatchBeginA0A0F6AK91332 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0F6AK91327 ;
faldo:reference isoform:A0A0F6AK91-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91333 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
?targetMotifMatch334 faldo:location ?targetMotifMatchRegionMatch335 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00394337 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0F6AK91MF_00394328 .
?targetMotifMatchRegionMatch335 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00394336 .
?targetMotifMatchRegionMatchBeginMF_00394336 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00394329 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00394337 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0F6AK91MF_00394326, 1, (STRLEN(?templateMotifCigarA0A0F6AK91MF_00394326) - STRLEN(REPLACE(?templateMotifCigarA0A0F6AK91MF_00394326, CONCAT('^(?:-*[^-]){', STR(((230 - ?templateMotifSequenceMatchBeginPositionA0A0F6AK91327) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1338) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394328, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394328) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394328, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1338), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394328, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394328) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394328, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1338), '}'), '')))), '[^-]', ''))) AS ?step2339) .
BIND(((?step2339 + ?targetMotifMatchRegionMatchBeginPositionMF_00394329) - 1) AS ?thisPositionOn101) .
BIND(?thisPositionOn101 AS ?thisPositionOn102) .
BIND(?this AS ?pfs1t340) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfsb98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn102))) AS ?pfse99) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn101, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a97')) AS ?annotation97) .
BIND(?this AS ?pfs96) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch345 faldo:location ?templateMotifSequenceMatchRegionA0A0F6AK91346 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91348 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0F6AK91MF_00394341 .
?templateMotifSequenceMatchRegionA0A0F6AK91346 faldo:begin ?templateMotifSequenceMatchBeginA0A0F6AK91347 .
?templateMotifSequenceMatchBeginA0A0F6AK91347 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0F6AK91342 ;
faldo:reference isoform:A0A0F6AK91-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91348 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
?targetMotifMatch349 faldo:location ?targetMotifMatchRegionMatch350 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00394352 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0F6AK91MF_00394343 .
?targetMotifMatchRegionMatch350 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00394351 .
?targetMotifMatchRegionMatchBeginMF_00394351 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00394344 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00394352 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0F6AK91MF_00394341, 1, (STRLEN(?templateMotifCigarA0A0F6AK91MF_00394341) - STRLEN(REPLACE(?templateMotifCigarA0A0F6AK91MF_00394341, CONCAT('^(?:-*[^-]){', STR(((240 - ?templateMotifSequenceMatchBeginPositionA0A0F6AK91342) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1353) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394343, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394343) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394343, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1353), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394343, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394343) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394343, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1353), '}'), '')))), '[^-]', ''))) AS ?step2354) .
BIND(((?step2354 + ?targetMotifMatchRegionMatchBeginPositionMF_00394344) - 1) AS ?thisPositionOn108) .
BIND(?thisPositionOn108 AS ?thisPositionOn109) .
BIND(?this AS ?pfs1t355) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfsb105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfse106) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn108, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a104')) AS ?annotation104) .
BIND(?this AS ?pfs103) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch360 faldo:location ?templateMotifSequenceMatchRegionA0A0F6AK91361 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91363 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0F6AK91MF_00394356 .
?templateMotifSequenceMatchRegionA0A0F6AK91361 faldo:begin ?templateMotifSequenceMatchBeginA0A0F6AK91362 .
?templateMotifSequenceMatchBeginA0A0F6AK91362 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0F6AK91357 ;
faldo:reference isoform:A0A0F6AK91-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91363 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
?targetMotifMatch364 faldo:location ?targetMotifMatchRegionMatch365 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00394367 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0F6AK91MF_00394358 .
?targetMotifMatchRegionMatch365 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00394366 .
?targetMotifMatchRegionMatchBeginMF_00394366 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00394359 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00394367 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0F6AK91MF_00394356, 1, (STRLEN(?templateMotifCigarA0A0F6AK91MF_00394356) - STRLEN(REPLACE(?templateMotifCigarA0A0F6AK91MF_00394356, CONCAT('^(?:-*[^-]){', STR(((241 - ?templateMotifSequenceMatchBeginPositionA0A0F6AK91357) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1368) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394358, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394358) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394358, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1368), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394358, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394358) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394358, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1368), '}'), '')))), '[^-]', ''))) AS ?step2369) .
BIND(((?step2369 + ?targetMotifMatchRegionMatchBeginPositionMF_00394359) - 1) AS ?thisPositionOn115) .
BIND(?thisPositionOn115 AS ?thisPositionOn116) .
BIND(?this AS ?pfs1t370) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn115))) AS ?pfsb112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfse113) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn115, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a111')) AS ?annotation111) .
BIND(?this AS ?pfs110) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch375 faldo:location ?templateMotifSequenceMatchRegionA0A0F6AK91376 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91378 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0F6AK91MF_00394371 .
?templateMotifSequenceMatchRegionA0A0F6AK91376 faldo:begin ?templateMotifSequenceMatchBeginA0A0F6AK91377 .
?templateMotifSequenceMatchBeginA0A0F6AK91377 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0F6AK91372 ;
faldo:reference isoform:A0A0F6AK91-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91378 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
?targetMotifMatch379 faldo:location ?targetMotifMatchRegionMatch380 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00394382 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0F6AK91MF_00394373 .
?targetMotifMatchRegionMatch380 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00394381 .
?targetMotifMatchRegionMatchBeginMF_00394381 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00394374 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00394382 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0F6AK91MF_00394371, 1, (STRLEN(?templateMotifCigarA0A0F6AK91MF_00394371) - STRLEN(REPLACE(?templateMotifCigarA0A0F6AK91MF_00394371, CONCAT('^(?:-*[^-]){', STR(((241 - ?templateMotifSequenceMatchBeginPositionA0A0F6AK91372) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1383) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394373, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394373) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394373, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1383), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394373, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394373) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394373, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1383), '}'), '')))), '[^-]', ''))) AS ?step2384) .
BIND(((?step2384 + ?targetMotifMatchRegionMatchBeginPositionMF_00394374) - 1) AS ?thisPositionOn122) .
BIND(?thisPositionOn122 AS ?thisPositionOn123) .
BIND(?this AS ?pfs1t385) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn122))) AS ?pfsb119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn123))) AS ?pfse120) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn122, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a118')) AS ?annotation118) .
BIND(?this AS ?pfs117) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch390 faldo:location ?templateMotifSequenceMatchRegionA0A0F6AK91391 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91393 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0F6AK91MF_00394386 .
?templateMotifSequenceMatchRegionA0A0F6AK91391 faldo:begin ?templateMotifSequenceMatchBeginA0A0F6AK91392 .
?templateMotifSequenceMatchBeginA0A0F6AK91392 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0F6AK91387 ;
faldo:reference isoform:A0A0F6AK91-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91393 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
?targetMotifMatch394 faldo:location ?targetMotifMatchRegionMatch395 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00394397 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0F6AK91MF_00394388 .
?targetMotifMatchRegionMatch395 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00394396 .
?targetMotifMatchRegionMatchBeginMF_00394396 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00394389 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00394397 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0F6AK91MF_00394386, 1, (STRLEN(?templateMotifCigarA0A0F6AK91MF_00394386) - STRLEN(REPLACE(?templateMotifCigarA0A0F6AK91MF_00394386, CONCAT('^(?:-*[^-]){', STR(((242 - ?templateMotifSequenceMatchBeginPositionA0A0F6AK91387) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1398) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394388, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394388) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394388, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1398), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394388, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394388) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394388, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1398), '}'), '')))), '[^-]', ''))) AS ?step2399) .
BIND(((?step2399 + ?targetMotifMatchRegionMatchBeginPositionMF_00394389) - 1) AS ?thisPositionOn129) .
BIND(?thisPositionOn129 AS ?thisPositionOn130) .
BIND(?this AS ?pfs1t400) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn129))) AS ?pfsb126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn130))) AS ?pfse127) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn129, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a125')) AS ?annotation125) .
BIND(?this AS ?pfs124) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch405 faldo:location ?templateMotifSequenceMatchRegionA0A0F6AK91406 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91408 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0F6AK91MF_00394401 .
?templateMotifSequenceMatchRegionA0A0F6AK91406 faldo:begin ?templateMotifSequenceMatchBeginA0A0F6AK91407 .
?templateMotifSequenceMatchBeginA0A0F6AK91407 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0F6AK91402 ;
faldo:reference isoform:A0A0F6AK91-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91408 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
?targetMotifMatch409 faldo:location ?targetMotifMatchRegionMatch410 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00394412 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0F6AK91MF_00394403 .
?targetMotifMatchRegionMatch410 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00394411 .
?targetMotifMatchRegionMatchBeginMF_00394411 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00394404 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00394412 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0F6AK91MF_00394401, 1, (STRLEN(?templateMotifCigarA0A0F6AK91MF_00394401) - STRLEN(REPLACE(?templateMotifCigarA0A0F6AK91MF_00394401, CONCAT('^(?:-*[^-]){', STR(((265 - ?templateMotifSequenceMatchBeginPositionA0A0F6AK91402) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1413) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394403, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394403) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394403, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1413), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394403, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394403) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394403, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1413), '}'), '')))), '[^-]', ''))) AS ?step2414) .
BIND(((?step2414 + ?targetMotifMatchRegionMatchBeginPositionMF_00394404) - 1) AS ?thisPositionOn136) .
BIND(?thisPositionOn136 AS ?thisPositionOn137) .
BIND(?this AS ?pfs1t415) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn136))) AS ?pfsb133) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn137))) AS ?pfse134) .
FILTER (REGEX('[VLI]', SUBSTR(?thisSequenceValue, ?thisPositionOn136, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a132')) AS ?annotation132) .
BIND(?this AS ?pfs131) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch420 faldo:location ?templateMotifSequenceMatchRegionA0A0F6AK91421 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91423 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0F6AK91MF_00394416 .
?templateMotifSequenceMatchRegionA0A0F6AK91421 faldo:begin ?templateMotifSequenceMatchBeginA0A0F6AK91422 .
?templateMotifSequenceMatchBeginA0A0F6AK91422 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0F6AK91417 ;
faldo:reference isoform:A0A0F6AK91-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0F6AK91423 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
?targetMotifMatch424 faldo:location ?targetMotifMatchRegionMatch425 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00394427 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0F6AK91MF_00394418 .
?targetMotifMatchRegionMatch425 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00394426 .
?targetMotifMatchRegionMatchBeginMF_00394426 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00394419 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00394427 edam:has_input signature:MF_00394 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0F6AK91MF_00394416, 1, (STRLEN(?templateMotifCigarA0A0F6AK91MF_00394416) - STRLEN(REPLACE(?templateMotifCigarA0A0F6AK91MF_00394416, CONCAT('^(?:-*[^-]){', STR(((267 - ?templateMotifSequenceMatchBeginPositionA0A0F6AK91417) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1428) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394418, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394418) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394418, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1428), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0F6AK91MF_00394418, 1, (STRLEN(?targetMotifMatchCigarA0A0F6AK91MF_00394418) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0F6AK91MF_00394418, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1428), '}'), '')))), '[^-]', ''))) AS ?step2429) .
BIND(((?step2429 + ?targetMotifMatchRegionMatchBeginPositionMF_00394419) - 1) AS ?thisPositionOn143) .
BIND(?thisPositionOn143 AS ?thisPositionOn144) .
BIND(?this AS ?pfs1t430) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn143))) AS ?pfsb140) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn144))) AS ?pfse141) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn143, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00394a139')) AS ?annotation139) .
BIND(?this AS ?pfs138) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(?this AS ?case12) .
}
}
"xsd:string |
