| http://purl.uniprot.org/unirules/MF_00497#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:198849 up:source unirule:MF_00497 .
_:198850 up:source unirule:MF_00497 .
_:198851 up:source unirule:MF_00497 .
_:198852 up:source unirule:MF_00497 .
_:198853 up:source unirule:MF_00497 .
_:198854 up:source unirule:MF_00497 .
_:198855 up:source unirule:MF_00497 .
_:198856 up:source unirule:MF_00497 .
_:198857 up:source unirule:MF_00497 .
_:198858 up:source unirule:MF_00497 .
_:198859 up:source unirule:MF_00497 .
_:198860 up:source unirule:MF_00497 .
_:198861 up:source unirule:MF_00497 .
_:198862 up:source unirule:MF_00497 .
_:198863 up:source unirule:MF_00497 .
_:198864 up:source unirule:MF_00497 .
_:198865 up:source unirule:MF_00497 .
_:198866 up:source unirule:MF_00497 .
_:198867 up:source unirule:MF_00497 .
_:198868 up:source unirule:MF_00497 .
_:198869 up:source unirule:MF_00497 .
_:198870 up:source unirule:MF_00497 .
_:198871 up:source unirule:MF_00497 .
_:198872 up:source unirule:MF_00497 .
_:198873 up:source unirule:MF_00497 .
_:198874 up:source unirule:MF_00497 .
_:198875 up:source unirule:MF_00497 .
_:198876 up:source unirule:MF_00497 .
_:198877 up:source unirule:MF_00497 .
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_:198880 up:source unirule:MF_00497 .
_:198881 up:source unirule:MF_00497 .
_:198882 up:source unirule:MF_00497 .
_:198883 up:source unirule:MF_00497 .
_:198884 up:source unirule:MF_00497 .
_:198885 up:source unirule:MF_00497 .
_:198886 up:source unirule:MF_00497 .
_:198887 up:source unirule:MF_00497 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0005737 ,
GO:0006650 ,
GO:0050492 ,
keyword:1208 ,
keyword:443 ,
keyword:444 ,
keyword:479 ,
keyword:520 ,
keyword:521 ,
keyword:560 ,
keyword:594 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.1.1.261' ;
up:fullName 'Glycerol-1-phosphate dehydrogenase [NAD(P)+]' ;
up:shortName 'G1P dehydrogenase' ,
'G1PDH' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Enantiomeric glycerophosphate synthase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'sn-glycerol-1-phosphate dehydrogenase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'egsA' .
?annotation4 a up:Subcellular_Location_Annotation .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the glycerol-1-phosphate dehydrogenase family.' .
?case7 up:classifiedWith keyword:862 .
?case8 up:classifiedWith keyword:533 .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:57540 .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:57540 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:29105 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:29105 .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:29105 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf ?molecule51 .
?molecule51 rdfs:label 'substrate' .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:57540 .
?pfs61 up:annotation ?annotation62 .
?annotation62 faldo:begin ?pfsb63 ;
faldo:end ?pfse64 ;
up:ligand ?ligand65 ;
rdf:type up:Binding_Site_Annotation .
?pfsb63 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse64 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
?ligand65 rdfs:subClassOf ?molecule66 .
?molecule66 rdfs:label 'substrate' .
?pfs69 up:annotation ?annotation70 .
?annotation70 faldo:begin ?pfsb71 ;
faldo:end ?pfse72 ;
up:ligand ?ligand73 ;
rdf:type up:Binding_Site_Annotation .
?pfsb71 faldo:position ?thisPositionOn75 ;
rdf:type faldo:ExactPosition .
?pfse72 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?ligand73 rdfs:subClassOf ?molecule74 .
?molecule74 rdfs:label 'substrate' .
?pfs77 up:annotation ?annotation78 .
?annotation78 faldo:begin ?pfsb79 ;
faldo:end ?pfse80 ;
up:ligand ?ligand81 ;
rdf:type up:Binding_Site_Annotation .
?pfsb79 faldo:position ?thisPositionOn82 ;
rdf:type faldo:ExactPosition .
?pfse80 faldo:position ?thisPositionOn83 ;
rdf:type faldo:ExactPosition .
?ligand81 rdfs:subClassOf chebi:57540 .
?pfs84 up:annotation ?annotation85 .
?annotation85 faldo:begin ?pfsb86 ;
faldo:end ?pfse87 ;
up:ligand ?ligand88 ;
rdf:type up:Binding_Site_Annotation .
?pfsb86 faldo:position ?thisPositionOn89 ;
rdf:type faldo:ExactPosition .
?pfse87 faldo:position ?thisPositionOn90 ;
rdf:type faldo:ExactPosition .
?ligand88 rdfs:subClassOf chebi:57540 .
?pfs91 up:annotation ?annotation92 .
?annotation92 faldo:begin ?pfsb93 ;
faldo:end ?pfse94 ;
up:ligand ?ligand95 ;
rdf:type up:Binding_Site_Annotation .
?pfsb93 faldo:position ?thisPositionOn96 ;
rdf:type faldo:ExactPosition .
?pfse94 faldo:position ?thisPositionOn97 ;
rdf:type faldo:ExactPosition .
?ligand95 rdfs:subClassOf chebi:49786 .
?pfs98 up:annotation ?annotation99 .
?annotation99 faldo:begin ?pfsb100 ;
faldo:end ?pfse101 ;
up:ligand ?ligand102 ;
rdf:type up:Binding_Site_Annotation .
?pfsb100 faldo:position ?thisPositionOn103 ;
rdf:type faldo:ExactPosition .
?pfse101 faldo:position ?thisPositionOn104 ;
rdf:type faldo:ExactPosition .
?ligand102 rdfs:subClassOf chebi:49786 .
?pfs105 up:annotation ?annotation106 .
?annotation106 faldo:begin ?pfsb107 ;
faldo:end ?pfse108 ;
up:ligand ?ligand109 ;
rdf:type up:Binding_Site_Annotation .
?pfsb107 faldo:position ?thisPositionOn110 ;
rdf:type faldo:ExactPosition .
?pfse108 faldo:position ?thisPositionOn111 ;
rdf:type faldo:ExactPosition .
?ligand109 rdfs:subClassOf chebi:49786 .
?pfs112 up:annotation ?annotation113 .
?annotation113 faldo:begin ?pfsb114 ;
faldo:end ?pfse115 ;
up:ligand ?ligand116 ;
rdf:type up:Binding_Site_Annotation .
?pfsb114 faldo:position ?thisPositionOn117 ;
rdf:type faldo:ExactPosition .
?pfse115 faldo:position ?thisPositionOn118 ;
rdf:type faldo:ExactPosition .
?ligand116 rdfs:subClassOf chebi:57540 .
?pfs119 up:annotation ?annotation120 .
?annotation120 faldo:begin ?pfsb121 ;
faldo:end ?pfse122 ;
up:ligand ?ligand123 ;
rdf:type up:Binding_Site_Annotation .
?pfsb121 faldo:position ?thisPositionOn125 ;
rdf:type faldo:ExactPosition .
?pfse122 faldo:position ?thisPositionOn126 ;
rdf:type faldo:ExactPosition .
?ligand123 rdfs:subClassOf ?molecule124 .
?molecule124 rdfs:label 'substrate' .
?pfs127 up:annotation ?annotation128 .
?annotation128 faldo:begin ?pfsb129 ;
faldo:end ?pfse130 ;
up:ligand ?ligand131 ;
rdf:type up:Binding_Site_Annotation .
?pfsb129 faldo:position ?thisPositionOn132 ;
rdf:type faldo:ExactPosition .
?pfse130 faldo:position ?thisPositionOn133 ;
rdf:type faldo:ExactPosition .
?ligand131 rdfs:subClassOf chebi:57540 .
?pfs134 up:annotation ?annotation135 .
?annotation135 faldo:begin ?pfsb136 ;
faldo:end ?pfse137 ;
up:ligand ?ligand138 ;
rdf:type up:Binding_Site_Annotation .
?pfsb136 faldo:position ?thisPositionOn140 ;
rdf:type faldo:ExactPosition .
?pfse137 faldo:position ?thisPositionOn141 ;
rdf:type faldo:ExactPosition .
?ligand138 rdfs:subClassOf ?molecule139 .
?molecule139 rdfs:label 'substrate' .
?pfs142 up:annotation ?annotation143 .
?annotation143 faldo:begin ?pfsb144 ;
faldo:end ?pfse145 ;
up:ligand ?ligand146 ;
rdf:type up:Binding_Site_Annotation .
?pfsb144 faldo:position ?thisPositionOn148 ;
rdf:type faldo:ExactPosition .
?pfse145 faldo:position ?thisPositionOn149 ;
rdf:type faldo:ExactPosition .
?ligand146 rdfs:subClassOf ?molecule147 .
?molecule147 rdfs:label 'substrate' .
_:198888 a rdf:Statement ;
up:attribution _:198849 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:198889 a rdf:Statement ;
up:attribution _:198850 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:198890 a rdf:Statement ;
up:attribution _:198851 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:198891 a rdf:Statement ;
up:attribution _:198852 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:198892 a rdf:Statement ;
up:attribution _:198853 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:198893 a rdf:Statement ;
up:attribution _:198854 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:198894 a rdf:Statement ;
up:attribution _:198855 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:198895 a rdf:Statement ;
up:attribution _:198856 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:444 .
_:198896 a rdf:Statement ;
up:attribution _:198857 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:443 .
_:198897 a rdf:Statement ;
up:attribution _:198858 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:198899 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
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up:attribution _:198861 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:198901 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:594 .
_:198902 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1208 .
_:198903 a rdf:Statement ;
up:attribution _:198864 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050492 .
_:198904 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006650 .
_:198905 a rdf:Statement ;
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rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:198906 a rdf:Statement ;
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rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:198907 a rdf:Statement ;
up:attribution _:198868 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:533 .
_:198908 a rdf:Statement ;
up:source unirule:MF_00497 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:198909 a rdf:Statement ;
up:attribution _:198869 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:198910 a rdf:Statement ;
up:source unirule:MF_00497 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:198911 a rdf:Statement ;
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rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:198912 a rdf:Statement ;
up:source unirule:MF_00497 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:198913 a rdf:Statement ;
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rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:198914 a rdf:Statement ;
up:source unirule:MF_00497 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:198915 a rdf:Statement ;
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rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:198916 a rdf:Statement ;
up:source unirule:MF_00497 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:198917 a rdf:Statement ;
up:attribution _:198873 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:198918 a rdf:Statement ;
up:source unirule:MF_00497 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:198919 a rdf:Statement ;
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rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:198920 a rdf:Statement ;
up:source unirule:MF_00497 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:198921 a rdf:Statement ;
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rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:198922 a rdf:Statement ;
up:source unirule:MF_00497 ;
rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:198923 a rdf:Statement ;
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rdf:subject ?pfs61 ;
rdf:predicate up:annotation ;
rdf:object ?annotation62 .
_:198924 a rdf:Statement ;
up:source unirule:MF_00497 ;
rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
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rdf:subject ?pfs69 ;
rdf:predicate up:annotation ;
rdf:object ?annotation70 .
_:198926 a rdf:Statement ;
up:source unirule:MF_00497 ;
rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:198927 a rdf:Statement ;
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rdf:subject ?pfs77 ;
rdf:predicate up:annotation ;
rdf:object ?annotation78 .
_:198928 a rdf:Statement ;
up:source unirule:MF_00497 ;
rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:198929 a rdf:Statement ;
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rdf:subject ?pfs84 ;
rdf:predicate up:annotation ;
rdf:object ?annotation85 .
_:198930 a rdf:Statement ;
up:source unirule:MF_00497 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
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up:attribution _:198880 ;
rdf:subject ?pfs91 ;
rdf:predicate up:annotation ;
rdf:object ?annotation92 .
_:198932 a rdf:Statement ;
up:source unirule:MF_00497 ;
rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:198933 a rdf:Statement ;
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rdf:subject ?pfs98 ;
rdf:predicate up:annotation ;
rdf:object ?annotation99 .
_:198934 a rdf:Statement ;
up:source unirule:MF_00497 ;
rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
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rdf:subject ?pfs105 ;
rdf:predicate up:annotation ;
rdf:object ?annotation106 .
_:198936 a rdf:Statement ;
up:source unirule:MF_00497 ;
rdf:subject ?pfs112 ;
rdf:predicate up:annotation ;
rdf:object ?annotation113 .
_:198937 a rdf:Statement ;
up:attribution _:198883 ;
rdf:subject ?pfs112 ;
rdf:predicate up:annotation ;
rdf:object ?annotation113 .
_:198938 a rdf:Statement ;
up:source unirule:MF_00497 ;
rdf:subject ?pfs119 ;
rdf:predicate up:annotation ;
rdf:object ?annotation120 .
_:198939 a rdf:Statement ;
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rdf:subject ?pfs119 ;
rdf:predicate up:annotation ;
rdf:object ?annotation120 .
_:198940 a rdf:Statement ;
up:source unirule:MF_00497 ;
rdf:subject ?pfs127 ;
rdf:predicate up:annotation ;
rdf:object ?annotation128 .
_:198941 a rdf:Statement ;
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rdf:subject ?pfs127 ;
rdf:predicate up:annotation ;
rdf:object ?annotation128 .
_:198942 a rdf:Statement ;
up:source unirule:MF_00497 ;
rdf:subject ?pfs134 ;
rdf:predicate up:annotation ;
rdf:object ?annotation135 .
_:198943 a rdf:Statement ;
up:attribution _:198886 ;
rdf:subject ?pfs134 ;
rdf:predicate up:annotation ;
rdf:object ?annotation135 .
_:198944 a rdf:Statement ;
up:source unirule:MF_00497 ;
rdf:subject ?pfs142 ;
rdf:predicate up:annotation ;
rdf:object ?annotation143 .
_:198945 a rdf:Statement ;
up:attribution _:198887 ;
rdf:subject ?pfs142 ;
rdf:predicate up:annotation ;
rdf:object ?annotation143 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00497
#Rule MF_00497 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00497_B .
?thisOrganism rdfs:subClassOf+ taxon:1385 .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00497_A .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
}
BIND(URI(CONCAT(STR(?this), '#MF_00497a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00497a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00497a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00497a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00497a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch154 faldo:location ?templateMotifSequenceMatchRegionP72010155 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP72010157 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP72010MF_00497_A150 .
?templateMotifSequenceMatchRegionP72010155 faldo:begin ?templateMotifSequenceMatchBeginP72010156 .
?templateMotifSequenceMatchBeginP72010156 faldo:position ?templateMotifSequenceMatchBeginPositionP72010151 ;
faldo:reference isoform:P72010-1 .
?templateMotifSequenceProfileAlignmentOperationP72010157 edam:has_input signature:MF_00497_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch158 faldo:location ?targetMotifMatchRegionMatch159 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00497_A161 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP72010MF_00497_A152 .
?targetMotifMatchRegionMatch159 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00497_A160 .
?targetMotifMatchRegionMatchBeginMF_00497_A160 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00497_A153 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00497_A161 edam:has_input signature:MF_00497_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP72010MF_00497_A150, 1, (STRLEN(?templateMotifCigarP72010MF_00497_A150) - STRLEN(REPLACE(?templateMotifCigarP72010MF_00497_A150, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionP72010151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1162) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP72010MF_00497_A152, 1, (STRLEN(?targetMotifMatchCigarP72010MF_00497_A152) - STRLEN(REPLACE(?targetMotifMatchCigarP72010MF_00497_A152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP72010MF_00497_A152, 1, (STRLEN(?targetMotifMatchCigarP72010MF_00497_A152) - STRLEN(REPLACE(?targetMotifMatchCigarP72010MF_00497_A152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1162), '}'), '')))), '[^-]', ''))) AS ?step2163) .
BIND(((?step2163 + ?targetMotifMatchRegionMatchBeginPositionMF_00497_A153) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP72010MF_00497_A150, 1, (STRLEN(?templateMotifCigarP72010MF_00497_A150) - STRLEN(REPLACE(?templateMotifCigarP72010MF_00497_A150, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionP72010151) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP72010MF_00497_A152, 1, (STRLEN(?targetMotifMatchCigarP72010MF_00497_A152) - STRLEN(REPLACE(?targetMotifMatchCigarP72010MF_00497_A152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP72010MF_00497_A152, 1, (STRLEN(?targetMotifMatchCigarP72010MF_00497_A152) - STRLEN(REPLACE(?targetMotifMatchCigarP72010MF_00497_A152, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1164), '}'), '')))), '[^-]', ''))) AS ?step2165) .
BIND(((?step2165 + ?targetMotifMatchRegionMatchBeginPositionMF_00497_A153) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t166) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]D', SUBSTR(?thisSequenceValue, ?thisPositionOn16, (?thisPositionOn17 - ?thisPositionOn16)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00497a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch171 faldo:location ?templateMotifSequenceMatchRegionP72010172 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP72010174 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP72010MF_00497_A167 .
?templateMotifSequenceMatchRegionP72010172 faldo:begin ?templateMotifSequenceMatchBeginP72010173 .
?templateMotifSequenceMatchBeginP72010173 faldo:position ?templateMotifSequenceMatchBeginPositionP72010168 ;
faldo:reference isoform:P72010-1 .
?templateMotifSequenceProfileAlignmentOperationP72010174 edam:has_input signature:MF_00497_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch175 faldo:location ?targetMotifMatchRegionMatch176 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00497_A178 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP72010MF_00497_A169 .
?targetMotifMatchRegionMatch176 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00497_A177 .
?targetMotifMatchRegionMatchBeginMF_00497_A177 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00497_A170 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00497_A178 edam:has_input signature:MF_00497_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP72010MF_00497_A167, 1, (STRLEN(?templateMotifCigarP72010MF_00497_A167) - STRLEN(REPLACE(?templateMotifCigarP72010MF_00497_A167, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionP72010168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP72010MF_00497_A169, 1, (STRLEN(?targetMotifMatchCigarP72010MF_00497_A169) - STRLEN(REPLACE(?targetMotifMatchCigarP72010MF_00497_A169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP72010MF_00497_A169, 1, (STRLEN(?targetMotifMatchCigarP72010MF_00497_A169) - STRLEN(REPLACE(?targetMotifMatchCigarP72010MF_00497_A169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1179), '}'), '')))), '[^-]', ''))) AS ?step2180) .
BIND(((?step2180 + ?targetMotifMatchRegionMatchBeginPositionMF_00497_A170) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP72010MF_00497_A167, 1, (STRLEN(?templateMotifCigarP72010MF_00497_A167) - STRLEN(REPLACE(?templateMotifCigarP72010MF_00497_A167, CONCAT('^(?:-*[^-]){', STR(((119 - ?templateMotifSequenceMatchBeginPositionP72010168) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP72010MF_00497_A169, 1, (STRLEN(?targetMotifMatchCigarP72010MF_00497_A169) - STRLEN(REPLACE(?targetMotifMatchCigarP72010MF_00497_A169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP72010MF_00497_A169, 1, (STRLEN(?targetMotifMatchCigarP72010MF_00497_A169) - STRLEN(REPLACE(?targetMotifMatchCigarP72010MF_00497_A169, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1181), '}'), '')))), '[^-]', ''))) AS ?step2182) .
BIND(((?step2182 + ?targetMotifMatchRegionMatchBeginPositionMF_00497_A170) - 1) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t183) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER (REGEX('T[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]S', SUBSTR(?thisSequenceValue, ?thisPositionOn23, (?thisPositionOn24 - ?thisPositionOn23)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00497a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch188 faldo:location ?templateMotifSequenceMatchRegionP72010189 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP72010191 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP72010MF_00497_A184 .
?templateMotifSequenceMatchRegionP72010189 faldo:begin ?templateMotifSequenceMatchBeginP72010190 .
?templateMotifSequenceMatchBeginP72010190 faldo:position ?templateMotifSequenceMatchBeginPositionP72010185 ;
faldo:reference isoform:P72010-1 .
?templateMotifSequenceProfileAlignmentOperationP72010191 edam:has_input signature:MF_00497_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch192 faldo:location ?targetMotifMatchRegionMatch193 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00497_A195 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP72010MF_00497_A186 .
?targetMotifMatchRegionMatch193 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00497_A194 .
?targetMotifMatchRegionMatchBeginMF_00497_A194 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00497_A187 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00497_A195 edam:has_input signature:MF_00497_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP72010MF_00497_A184, 1, (STRLEN(?templateMotifCigarP72010MF_00497_A184) - STRLEN(REPLACE(?templateMotifCigarP72010MF_00497_A184, CONCAT('^(?:-*[^-]){', STR(((168 - ?templateMotifSequenceMatchBeginPositionP72010185) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP72010MF_00497_A186, 1, (STRLEN(?targetMotifMatchCigarP72010MF_00497_A186) - STRLEN(REPLACE(?targetMotifMatchCigarP72010MF_00497_A186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP72010MF_00497_A186, 1, (STRLEN(?targetMotifMatchCigarP72010MF_00497_A186) - STRLEN(REPLACE(?targetMotifMatchCigarP72010MF_00497_A186, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1196), '}'), '')))), '[^-]', ''))) AS ?step2197) .
BIND(((?step2197 + ?targetMotifMatchRegionMatchBeginPositionMF_00497_A187) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t198) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00497a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch203 faldo:location ?templateMotifSequenceMatchRegionP72010204 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP72010206 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP72010MF_00497_A199 .
?templateMotifSequenceMatchRegionP72010204 faldo:begin ?templateMotifSequenceMatchBeginP72010205 .
?templateMotifSequenceMatchBeginP72010205 faldo:position ?templateMotifSequenceMatchBeginPositionP72010200 ;
faldo:reference isoform:P72010-1 .
?templateMotifSequenceProfileAlignmentOperationP72010206 edam:has_input signature:MF_00497_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch207 faldo:location ?targetMotifMatchRegionMatch208 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00497_A210 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP72010MF_00497_A201 .
?targetMotifMatchRegionMatch208 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00497_A209 .
?targetMotifMatchRegionMatchBeginMF_00497_A209 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00497_A202 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00497_A210 edam:has_input signature:MF_00497_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP72010MF_00497_A199, 1, (STRLEN(?templateMotifCigarP72010MF_00497_A199) - STRLEN(REPLACE(?templateMotifCigarP72010MF_00497_A199, CONCAT('^(?:-*[^-]){', STR(((248 - ?templateMotifSequenceMatchBeginPositionP72010200) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1211) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP72010MF_00497_A201, 1, (STRLEN(?targetMotifMatchCigarP72010MF_00497_A201) - STRLEN(REPLACE(?targetMotifMatchCigarP72010MF_00497_A201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP72010MF_00497_A201, 1, (STRLEN(?targetMotifMatchCigarP72010MF_00497_A201) - STRLEN(REPLACE(?targetMotifMatchCigarP72010MF_00497_A201, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1211), '}'), '')))), '[^-]', ''))) AS ?step2212) .
BIND(((?step2212 + ?targetMotifMatchRegionMatchBeginPositionMF_00497_A202) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t213) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00497a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch218 faldo:location ?templateMotifSequenceMatchRegionP72010219 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP72010221 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP72010MF_00497_A214 .
?templateMotifSequenceMatchRegionP72010219 faldo:begin ?templateMotifSequenceMatchBeginP72010220 .
?templateMotifSequenceMatchBeginP72010220 faldo:position ?templateMotifSequenceMatchBeginPositionP72010215 ;
faldo:reference isoform:P72010-1 .
?templateMotifSequenceProfileAlignmentOperationP72010221 edam:has_input signature:MF_00497_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch222 faldo:location ?targetMotifMatchRegionMatch223 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00497_A225 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP72010MF_00497_A216 .
?targetMotifMatchRegionMatch223 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00497_A224 .
?targetMotifMatchRegionMatchBeginMF_00497_A224 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00497_A217 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00497_A225 edam:has_input signature:MF_00497_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP72010MF_00497_A214, 1, (STRLEN(?templateMotifCigarP72010MF_00497_A214) - STRLEN(REPLACE(?templateMotifCigarP72010MF_00497_A214, CONCAT('^(?:-*[^-]){', STR(((264 - ?templateMotifSequenceMatchBeginPositionP72010215) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1226) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP72010MF_00497_A216, 1, (STRLEN(?targetMotifMatchCigarP72010MF_00497_A216) - STRLEN(REPLACE(?targetMotifMatchCigarP72010MF_00497_A216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP72010MF_00497_A216, 1, (STRLEN(?targetMotifMatchCigarP72010MF_00497_A216) - STRLEN(REPLACE(?targetMotifMatchCigarP72010MF_00497_A216, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1226), '}'), '')))), '[^-]', ''))) AS ?step2227) .
BIND(((?step2227 + ?targetMotifMatchRegionMatchBeginPositionMF_00497_A217) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t228) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00497a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch233 faldo:location ?templateMotifSequenceMatchRegionP72010234 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP72010236 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP72010MF_00497_A229 .
?templateMotifSequenceMatchRegionP72010234 faldo:begin ?templateMotifSequenceMatchBeginP72010235 .
?templateMotifSequenceMatchBeginP72010235 faldo:position ?templateMotifSequenceMatchBeginPositionP72010230 ;
faldo:reference isoform:P72010-1 .
?templateMotifSequenceProfileAlignmentOperationP72010236 edam:has_input signature:MF_00497_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch237 faldo:location ?targetMotifMatchRegionMatch238 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00497_A240 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP72010MF_00497_A231 .
?targetMotifMatchRegionMatch238 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00497_A239 .
?targetMotifMatchRegionMatchBeginMF_00497_A239 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00497_A232 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00497_A240 edam:has_input signature:MF_00497_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP72010MF_00497_A229, 1, (STRLEN(?templateMotifCigarP72010MF_00497_A229) - STRLEN(REPLACE(?templateMotifCigarP72010MF_00497_A229, CONCAT('^(?:-*[^-]){', STR(((121 - ?templateMotifSequenceMatchBeginPositionP72010230) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1241) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP72010MF_00497_A231, 1, (STRLEN(?targetMotifMatchCigarP72010MF_00497_A231) - STRLEN(REPLACE(?targetMotifMatchCigarP72010MF_00497_A231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP72010MF_00497_A231, 1, (STRLEN(?targetMotifMatchCigarP72010MF_00497_A231) - STRLEN(REPLACE(?targetMotifMatchCigarP72010MF_00497_A231, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1241), '}'), '')))), '[^-]', ''))) AS ?step2242) .
BIND(((?step2242 + ?targetMotifMatchRegionMatchBeginPositionMF_00497_A232) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t243) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00497a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch248 faldo:location ?templateMotifSequenceMatchRegionP72010249 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP72010251 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP72010MF_00497_A244 .
?templateMotifSequenceMatchRegionP72010249 faldo:begin ?templateMotifSequenceMatchBeginP72010250 .
?templateMotifSequenceMatchBeginP72010250 faldo:position ?templateMotifSequenceMatchBeginPositionP72010245 ;
faldo:reference isoform:P72010-1 .
?templateMotifSequenceProfileAlignmentOperationP72010251 edam:has_input signature:MF_00497_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch252 faldo:location ?targetMotifMatchRegionMatch253 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00497_A255 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP72010MF_00497_A246 .
?targetMotifMatchRegionMatch253 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00497_A254 .
?targetMotifMatchRegionMatchBeginMF_00497_A254 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00497_A247 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00497_A255 edam:has_input signature:MF_00497_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP72010MF_00497_A244, 1, (STRLEN(?templateMotifCigarP72010MF_00497_A244) - STRLEN(REPLACE(?templateMotifCigarP72010MF_00497_A244, CONCAT('^(?:-*[^-]){', STR(((125 - ?templateMotifSequenceMatchBeginPositionP72010245) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1256) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP72010MF_00497_A246, 1, (STRLEN(?targetMotifMatchCigarP72010MF_00497_A246) - STRLEN(REPLACE(?targetMotifMatchCigarP72010MF_00497_A246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP72010MF_00497_A246, 1, (STRLEN(?targetMotifMatchCigarP72010MF_00497_A246) - STRLEN(REPLACE(?targetMotifMatchCigarP72010MF_00497_A246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1256), '}'), '')))), '[^-]', ''))) AS ?step2257) .
BIND(((?step2257 + ?targetMotifMatchRegionMatchBeginPositionMF_00497_A247) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t258) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00497a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch263 faldo:location ?templateMotifSequenceMatchRegionP72010264 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP72010266 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP72010MF_00497_A259 .
?templateMotifSequenceMatchRegionP72010264 faldo:begin ?templateMotifSequenceMatchBeginP72010265 .
?templateMotifSequenceMatchBeginP72010265 faldo:position ?templateMotifSequenceMatchBeginPositionP72010260 ;
faldo:reference isoform:P72010-1 .
?templateMotifSequenceProfileAlignmentOperationP72010266 edam:has_input signature:MF_00497_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch267 faldo:location ?targetMotifMatchRegionMatch268 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00497_A270 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP72010MF_00497_A261 .
?targetMotifMatchRegionMatch268 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00497_A269 .
?targetMotifMatchRegionMatchBeginMF_00497_A269 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00497_A262 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00497_A270 edam:has_input signature:MF_00497_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP72010MF_00497_A259, 1, (STRLEN(?templateMotifCigarP72010MF_00497_A259) - STRLEN(REPLACE(?templateMotifCigarP72010MF_00497_A259, CONCAT('^(?:-*[^-]){', STR(((168 - ?templateMotifSequenceMatchBeginPositionP72010260) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1271) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP72010MF_00497_A261, 1, (STRLEN(?targetMotifMatchCigarP72010MF_00497_A261) - STRLEN(REPLACE(?targetMotifMatchCigarP72010MF_00497_A261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP72010MF_00497_A261, 1, (STRLEN(?targetMotifMatchCigarP72010MF_00497_A261) - STRLEN(REPLACE(?targetMotifMatchCigarP72010MF_00497_A261, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1271), '}'), '')))), '[^-]', ''))) AS ?step2272) .
BIND(((?step2272 + ?targetMotifMatchRegionMatchBeginPositionMF_00497_A262) - 1) AS ?thisPositionOn67) .
BIND(?thisPositionOn67 AS ?thisPositionOn68) .
BIND(?this AS ?pfs1t273) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse64) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00497a62')) AS ?annotation62) .
BIND(?this AS ?pfs61) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch278 faldo:location ?templateMotifSequenceMatchRegionP72010279 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP72010281 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP72010MF_00497_A274 .
?templateMotifSequenceMatchRegionP72010279 faldo:begin ?templateMotifSequenceMatchBeginP72010280 .
?templateMotifSequenceMatchBeginP72010280 faldo:position ?templateMotifSequenceMatchBeginPositionP72010275 ;
faldo:reference isoform:P72010-1 .
?templateMotifSequenceProfileAlignmentOperationP72010281 edam:has_input signature:MF_00497_A ;
rdf:type edam:operation_0300 .
?targetMotifMatch282 faldo:location ?targetMotifMatchRegionMatch283 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00497_A285 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP72010MF_00497_A276 .
?targetMotifMatchRegionMatch283 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00497_A284 .
?targetMotifMatchRegionMatchBeginMF_00497_A284 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00497_A277 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00497_A285 edam:has_input signature:MF_00497_A ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP72010MF_00497_A274, 1, (STRLEN(?templateMotifCigarP72010MF_00497_A274) - STRLEN(REPLACE(?templateMotifCigarP72010MF_00497_A274, CONCAT('^(?:-*[^-]){', STR(((252 - ?templateMotifSequenceMatchBeginPositionP72010275) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1286) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP72010MF_00497_A276, 1, (STRLEN(?targetMotifMatchCigarP72010MF_00497_A276) - STRLEN(REPLACE(?targetMotifMatchCigarP72010MF_00497_A276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1286), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP72010MF_00497_A276, 1, (STRLEN(?targetMotifMatchCigarP72010MF_00497_A276) - STRLEN(REPLACE(?targetMotifMatchCigarP72010MF_00497_A276, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1286), '}'), '')))), '[^-]', ''))) AS ?step2287) .
BIND(((?step2287 + ?targetMotifMatchRegionMatchBeginPositionMF_00497_A277) - 1) AS ?thisPositionOn75) .
BIND(?thisPositionOn75 AS ?thisPositionOn76) .
BIND(?this AS ?pfs1t288) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn75))) AS ?pfsb71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfse72) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn75, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00497a70')) AS ?annotation70) .
BIND(?this AS ?pfs69) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch293 faldo:location ?templateMotifSequenceMatchRegionP94527294 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP94527296 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP94527MF_00497_B289 .
?templateMotifSequenceMatchRegionP94527294 faldo:begin ?templateMotifSequenceMatchBeginP94527295 .
?templateMotifSequenceMatchBeginP94527295 faldo:position ?templateMotifSequenceMatchBeginPositionP94527290 ;
faldo:reference isoform:P94527-1 .
?templateMotifSequenceProfileAlignmentOperationP94527296 edam:has_input signature:MF_00497_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch297 faldo:location ?targetMotifMatchRegionMatch298 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00497_B300 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP94527MF_00497_B291 .
?targetMotifMatchRegionMatch298 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00497_B299 .
?targetMotifMatchRegionMatchBeginMF_00497_B299 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00497_B292 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00497_B300 edam:has_input signature:MF_00497_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1385 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP94527MF_00497_B289, 1, (STRLEN(?templateMotifCigarP94527MF_00497_B289) - STRLEN(REPLACE(?templateMotifCigarP94527MF_00497_B289, CONCAT('^(?:-*[^-]){', STR(((116 - ?templateMotifSequenceMatchBeginPositionP94527290) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1301) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP94527MF_00497_B291, 1, (STRLEN(?targetMotifMatchCigarP94527MF_00497_B291) - STRLEN(REPLACE(?targetMotifMatchCigarP94527MF_00497_B291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1301), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP94527MF_00497_B291, 1, (STRLEN(?targetMotifMatchCigarP94527MF_00497_B291) - STRLEN(REPLACE(?targetMotifMatchCigarP94527MF_00497_B291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1301), '}'), '')))), '[^-]', ''))) AS ?step2302) .
BIND(((?step2302 + ?targetMotifMatchRegionMatchBeginPositionMF_00497_B292) - 1) AS ?thisPositionOn82) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP94527MF_00497_B289, 1, (STRLEN(?templateMotifCigarP94527MF_00497_B289) - STRLEN(REPLACE(?templateMotifCigarP94527MF_00497_B289, CONCAT('^(?:-*[^-]){', STR(((120 - ?templateMotifSequenceMatchBeginPositionP94527290) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1303) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP94527MF_00497_B291, 1, (STRLEN(?targetMotifMatchCigarP94527MF_00497_B291) - STRLEN(REPLACE(?targetMotifMatchCigarP94527MF_00497_B291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1303), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP94527MF_00497_B291, 1, (STRLEN(?targetMotifMatchCigarP94527MF_00497_B291) - STRLEN(REPLACE(?targetMotifMatchCigarP94527MF_00497_B291, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1303), '}'), '')))), '[^-]', ''))) AS ?step2304) .
BIND(((?step2304 + ?targetMotifMatchRegionMatchBeginPositionMF_00497_B292) - 1) AS ?thisPositionOn83) .
BIND(?this AS ?pfs2t305) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn82))) AS ?pfsb79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn83))) AS ?pfse80) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]D', SUBSTR(?thisSequenceValue, ?thisPositionOn82, (?thisPositionOn83 - ?thisPositionOn82)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00497a78')) AS ?annotation78) .
BIND(?this AS ?pfs77) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch310 faldo:location ?templateMotifSequenceMatchRegionP94527311 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP94527313 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP94527MF_00497_B306 .
?templateMotifSequenceMatchRegionP94527311 faldo:begin ?templateMotifSequenceMatchBeginP94527312 .
?templateMotifSequenceMatchBeginP94527312 faldo:position ?templateMotifSequenceMatchBeginPositionP94527307 ;
faldo:reference isoform:P94527-1 .
?templateMotifSequenceProfileAlignmentOperationP94527313 edam:has_input signature:MF_00497_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch314 faldo:location ?targetMotifMatchRegionMatch315 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00497_B317 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP94527MF_00497_B308 .
?targetMotifMatchRegionMatch315 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00497_B316 .
?targetMotifMatchRegionMatchBeginMF_00497_B316 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00497_B309 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00497_B317 edam:has_input signature:MF_00497_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1385 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP94527MF_00497_B306, 1, (STRLEN(?templateMotifCigarP94527MF_00497_B306) - STRLEN(REPLACE(?templateMotifCigarP94527MF_00497_B306, CONCAT('^(?:-*[^-]){', STR(((138 - ?templateMotifSequenceMatchBeginPositionP94527307) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1318) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP94527MF_00497_B308, 1, (STRLEN(?targetMotifMatchCigarP94527MF_00497_B308) - STRLEN(REPLACE(?targetMotifMatchCigarP94527MF_00497_B308, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1318), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP94527MF_00497_B308, 1, (STRLEN(?targetMotifMatchCigarP94527MF_00497_B308) - STRLEN(REPLACE(?targetMotifMatchCigarP94527MF_00497_B308, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1318), '}'), '')))), '[^-]', ''))) AS ?step2319) .
BIND(((?step2319 + ?targetMotifMatchRegionMatchBeginPositionMF_00497_B309) - 1) AS ?thisPositionOn89) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP94527MF_00497_B306, 1, (STRLEN(?templateMotifCigarP94527MF_00497_B306) - STRLEN(REPLACE(?templateMotifCigarP94527MF_00497_B306, CONCAT('^(?:-*[^-]){', STR(((141 - ?templateMotifSequenceMatchBeginPositionP94527307) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1320) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP94527MF_00497_B308, 1, (STRLEN(?targetMotifMatchCigarP94527MF_00497_B308) - STRLEN(REPLACE(?targetMotifMatchCigarP94527MF_00497_B308, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1320), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP94527MF_00497_B308, 1, (STRLEN(?targetMotifMatchCigarP94527MF_00497_B308) - STRLEN(REPLACE(?targetMotifMatchCigarP94527MF_00497_B308, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1320), '}'), '')))), '[^-]', ''))) AS ?step2321) .
BIND(((?step2321 + ?targetMotifMatchRegionMatchBeginPositionMF_00497_B309) - 1) AS ?thisPositionOn90) .
BIND(?this AS ?pfs2t322) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn89))) AS ?pfsb86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn90))) AS ?pfse87) .
FILTER (REGEX('T[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]S', SUBSTR(?thisSequenceValue, ?thisPositionOn89, (?thisPositionOn90 - ?thisPositionOn89)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00497a85')) AS ?annotation85) .
BIND(?this AS ?pfs84) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch327 faldo:location ?templateMotifSequenceMatchRegionP94527328 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP94527330 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP94527MF_00497_B323 .
?templateMotifSequenceMatchRegionP94527328 faldo:begin ?templateMotifSequenceMatchBeginP94527329 .
?templateMotifSequenceMatchBeginP94527329 faldo:position ?templateMotifSequenceMatchBeginPositionP94527324 ;
faldo:reference isoform:P94527-1 .
?templateMotifSequenceProfileAlignmentOperationP94527330 edam:has_input signature:MF_00497_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch331 faldo:location ?targetMotifMatchRegionMatch332 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00497_B334 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP94527MF_00497_B325 .
?targetMotifMatchRegionMatch332 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00497_B333 .
?targetMotifMatchRegionMatchBeginMF_00497_B333 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00497_B326 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00497_B334 edam:has_input signature:MF_00497_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1385 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP94527MF_00497_B323, 1, (STRLEN(?templateMotifCigarP94527MF_00497_B323) - STRLEN(REPLACE(?templateMotifCigarP94527MF_00497_B323, CONCAT('^(?:-*[^-]){', STR(((190 - ?templateMotifSequenceMatchBeginPositionP94527324) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1335) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP94527MF_00497_B325, 1, (STRLEN(?targetMotifMatchCigarP94527MF_00497_B325) - STRLEN(REPLACE(?targetMotifMatchCigarP94527MF_00497_B325, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1335), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP94527MF_00497_B325, 1, (STRLEN(?targetMotifMatchCigarP94527MF_00497_B325) - STRLEN(REPLACE(?targetMotifMatchCigarP94527MF_00497_B325, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1335), '}'), '')))), '[^-]', ''))) AS ?step2336) .
BIND(((?step2336 + ?targetMotifMatchRegionMatchBeginPositionMF_00497_B326) - 1) AS ?thisPositionOn96) .
BIND(?thisPositionOn96 AS ?thisPositionOn97) .
BIND(?this AS ?pfs2t337) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn96))) AS ?pfsb93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn97))) AS ?pfse94) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn96, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00497a92')) AS ?annotation92) .
BIND(?this AS ?pfs91) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch342 faldo:location ?templateMotifSequenceMatchRegionP94527343 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP94527345 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP94527MF_00497_B338 .
?templateMotifSequenceMatchRegionP94527343 faldo:begin ?templateMotifSequenceMatchBeginP94527344 .
?templateMotifSequenceMatchBeginP94527344 faldo:position ?templateMotifSequenceMatchBeginPositionP94527339 ;
faldo:reference isoform:P94527-1 .
?templateMotifSequenceProfileAlignmentOperationP94527345 edam:has_input signature:MF_00497_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch346 faldo:location ?targetMotifMatchRegionMatch347 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00497_B349 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP94527MF_00497_B340 .
?targetMotifMatchRegionMatch347 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00497_B348 .
?targetMotifMatchRegionMatchBeginMF_00497_B348 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00497_B341 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00497_B349 edam:has_input signature:MF_00497_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1385 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP94527MF_00497_B338, 1, (STRLEN(?templateMotifCigarP94527MF_00497_B338) - STRLEN(REPLACE(?templateMotifCigarP94527MF_00497_B338, CONCAT('^(?:-*[^-]){', STR(((270 - ?templateMotifSequenceMatchBeginPositionP94527339) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1350) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP94527MF_00497_B340, 1, (STRLEN(?targetMotifMatchCigarP94527MF_00497_B340) - STRLEN(REPLACE(?targetMotifMatchCigarP94527MF_00497_B340, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1350), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP94527MF_00497_B340, 1, (STRLEN(?targetMotifMatchCigarP94527MF_00497_B340) - STRLEN(REPLACE(?targetMotifMatchCigarP94527MF_00497_B340, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1350), '}'), '')))), '[^-]', ''))) AS ?step2351) .
BIND(((?step2351 + ?targetMotifMatchRegionMatchBeginPositionMF_00497_B341) - 1) AS ?thisPositionOn103) .
BIND(?thisPositionOn103 AS ?thisPositionOn104) .
BIND(?this AS ?pfs2t352) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn103))) AS ?pfsb100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn104))) AS ?pfse101) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn103, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00497a99')) AS ?annotation99) .
BIND(?this AS ?pfs98) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch357 faldo:location ?templateMotifSequenceMatchRegionP94527358 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP94527360 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP94527MF_00497_B353 .
?templateMotifSequenceMatchRegionP94527358 faldo:begin ?templateMotifSequenceMatchBeginP94527359 .
?templateMotifSequenceMatchBeginP94527359 faldo:position ?templateMotifSequenceMatchBeginPositionP94527354 ;
faldo:reference isoform:P94527-1 .
?templateMotifSequenceProfileAlignmentOperationP94527360 edam:has_input signature:MF_00497_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch361 faldo:location ?targetMotifMatchRegionMatch362 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00497_B364 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP94527MF_00497_B355 .
?targetMotifMatchRegionMatch362 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00497_B363 .
?targetMotifMatchRegionMatchBeginMF_00497_B363 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00497_B356 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00497_B364 edam:has_input signature:MF_00497_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1385 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP94527MF_00497_B353, 1, (STRLEN(?templateMotifCigarP94527MF_00497_B353) - STRLEN(REPLACE(?templateMotifCigarP94527MF_00497_B353, CONCAT('^(?:-*[^-]){', STR(((290 - ?templateMotifSequenceMatchBeginPositionP94527354) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1365) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP94527MF_00497_B355, 1, (STRLEN(?targetMotifMatchCigarP94527MF_00497_B355) - STRLEN(REPLACE(?targetMotifMatchCigarP94527MF_00497_B355, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1365), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP94527MF_00497_B355, 1, (STRLEN(?targetMotifMatchCigarP94527MF_00497_B355) - STRLEN(REPLACE(?targetMotifMatchCigarP94527MF_00497_B355, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1365), '}'), '')))), '[^-]', ''))) AS ?step2366) .
BIND(((?step2366 + ?targetMotifMatchRegionMatchBeginPositionMF_00497_B356) - 1) AS ?thisPositionOn110) .
BIND(?thisPositionOn110 AS ?thisPositionOn111) .
BIND(?this AS ?pfs2t367) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn110))) AS ?pfsb107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn111))) AS ?pfse108) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn110, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00497a106')) AS ?annotation106) .
BIND(?this AS ?pfs105) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch372 faldo:location ?templateMotifSequenceMatchRegionP94527373 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP94527375 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP94527MF_00497_B368 .
?templateMotifSequenceMatchRegionP94527373 faldo:begin ?templateMotifSequenceMatchBeginP94527374 .
?templateMotifSequenceMatchBeginP94527374 faldo:position ?templateMotifSequenceMatchBeginPositionP94527369 ;
faldo:reference isoform:P94527-1 .
?templateMotifSequenceProfileAlignmentOperationP94527375 edam:has_input signature:MF_00497_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch376 faldo:location ?targetMotifMatchRegionMatch377 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00497_B379 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP94527MF_00497_B370 .
?targetMotifMatchRegionMatch377 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00497_B378 .
?targetMotifMatchRegionMatchBeginMF_00497_B378 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00497_B371 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00497_B379 edam:has_input signature:MF_00497_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1385 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP94527MF_00497_B368, 1, (STRLEN(?templateMotifCigarP94527MF_00497_B368) - STRLEN(REPLACE(?templateMotifCigarP94527MF_00497_B368, CONCAT('^(?:-*[^-]){', STR(((54 - ?templateMotifSequenceMatchBeginPositionP94527369) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1380) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP94527MF_00497_B370, 1, (STRLEN(?targetMotifMatchCigarP94527MF_00497_B370) - STRLEN(REPLACE(?targetMotifMatchCigarP94527MF_00497_B370, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1380), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP94527MF_00497_B370, 1, (STRLEN(?targetMotifMatchCigarP94527MF_00497_B370) - STRLEN(REPLACE(?targetMotifMatchCigarP94527MF_00497_B370, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1380), '}'), '')))), '[^-]', ''))) AS ?step2381) .
BIND(((?step2381 + ?targetMotifMatchRegionMatchBeginPositionMF_00497_B371) - 1) AS ?thisPositionOn117) .
BIND(?thisPositionOn117 AS ?thisPositionOn118) .
BIND(?this AS ?pfs2t382) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfsb114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn118))) AS ?pfse115) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn117, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00497a113')) AS ?annotation113) .
BIND(?this AS ?pfs112) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch387 faldo:location ?templateMotifSequenceMatchRegionP94527388 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP94527390 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP94527MF_00497_B383 .
?templateMotifSequenceMatchRegionP94527388 faldo:begin ?templateMotifSequenceMatchBeginP94527389 .
?templateMotifSequenceMatchBeginP94527389 faldo:position ?templateMotifSequenceMatchBeginPositionP94527384 ;
faldo:reference isoform:P94527-1 .
?templateMotifSequenceProfileAlignmentOperationP94527390 edam:has_input signature:MF_00497_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch391 faldo:location ?targetMotifMatchRegionMatch392 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00497_B394 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP94527MF_00497_B385 .
?targetMotifMatchRegionMatch392 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00497_B393 .
?targetMotifMatchRegionMatchBeginMF_00497_B393 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00497_B386 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00497_B394 edam:has_input signature:MF_00497_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1385 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP94527MF_00497_B383, 1, (STRLEN(?templateMotifCigarP94527MF_00497_B383) - STRLEN(REPLACE(?templateMotifCigarP94527MF_00497_B383, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionP94527384) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1395) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP94527MF_00497_B385, 1, (STRLEN(?targetMotifMatchCigarP94527MF_00497_B385) - STRLEN(REPLACE(?targetMotifMatchCigarP94527MF_00497_B385, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1395), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP94527MF_00497_B385, 1, (STRLEN(?targetMotifMatchCigarP94527MF_00497_B385) - STRLEN(REPLACE(?targetMotifMatchCigarP94527MF_00497_B385, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1395), '}'), '')))), '[^-]', ''))) AS ?step2396) .
BIND(((?step2396 + ?targetMotifMatchRegionMatchBeginPositionMF_00497_B386) - 1) AS ?thisPositionOn125) .
BIND(?thisPositionOn125 AS ?thisPositionOn126) .
BIND(?this AS ?pfs2t397) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn125))) AS ?pfsb121) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn126))) AS ?pfse122) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn125, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00497a120')) AS ?annotation120) .
BIND(?this AS ?pfs119) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch402 faldo:location ?templateMotifSequenceMatchRegionP94527403 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP94527405 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP94527MF_00497_B398 .
?templateMotifSequenceMatchRegionP94527403 faldo:begin ?templateMotifSequenceMatchBeginP94527404 .
?templateMotifSequenceMatchBeginP94527404 faldo:position ?templateMotifSequenceMatchBeginPositionP94527399 ;
faldo:reference isoform:P94527-1 .
?templateMotifSequenceProfileAlignmentOperationP94527405 edam:has_input signature:MF_00497_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch406 faldo:location ?targetMotifMatchRegionMatch407 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00497_B409 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP94527MF_00497_B400 .
?targetMotifMatchRegionMatch407 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00497_B408 .
?targetMotifMatchRegionMatchBeginMF_00497_B408 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00497_B401 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00497_B409 edam:has_input signature:MF_00497_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1385 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP94527MF_00497_B398, 1, (STRLEN(?templateMotifCigarP94527MF_00497_B398) - STRLEN(REPLACE(?templateMotifCigarP94527MF_00497_B398, CONCAT('^(?:-*[^-]){', STR(((147 - ?templateMotifSequenceMatchBeginPositionP94527399) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1410) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP94527MF_00497_B400, 1, (STRLEN(?targetMotifMatchCigarP94527MF_00497_B400) - STRLEN(REPLACE(?targetMotifMatchCigarP94527MF_00497_B400, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1410), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP94527MF_00497_B400, 1, (STRLEN(?targetMotifMatchCigarP94527MF_00497_B400) - STRLEN(REPLACE(?targetMotifMatchCigarP94527MF_00497_B400, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1410), '}'), '')))), '[^-]', ''))) AS ?step2411) .
BIND(((?step2411 + ?targetMotifMatchRegionMatchBeginPositionMF_00497_B401) - 1) AS ?thisPositionOn132) .
BIND(?thisPositionOn132 AS ?thisPositionOn133) .
BIND(?this AS ?pfs2t412) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn132))) AS ?pfsb129) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn133))) AS ?pfse130) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn132, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00497a128')) AS ?annotation128) .
BIND(?this AS ?pfs127) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch417 faldo:location ?templateMotifSequenceMatchRegionP94527418 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP94527420 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP94527MF_00497_B413 .
?templateMotifSequenceMatchRegionP94527418 faldo:begin ?templateMotifSequenceMatchBeginP94527419 .
?templateMotifSequenceMatchBeginP94527419 faldo:position ?templateMotifSequenceMatchBeginPositionP94527414 ;
faldo:reference isoform:P94527-1 .
?templateMotifSequenceProfileAlignmentOperationP94527420 edam:has_input signature:MF_00497_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch421 faldo:location ?targetMotifMatchRegionMatch422 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00497_B424 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP94527MF_00497_B415 .
?targetMotifMatchRegionMatch422 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00497_B423 .
?targetMotifMatchRegionMatchBeginMF_00497_B423 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00497_B416 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00497_B424 edam:has_input signature:MF_00497_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1385 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP94527MF_00497_B413, 1, (STRLEN(?templateMotifCigarP94527MF_00497_B413) - STRLEN(REPLACE(?templateMotifCigarP94527MF_00497_B413, CONCAT('^(?:-*[^-]){', STR(((190 - ?templateMotifSequenceMatchBeginPositionP94527414) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1425) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP94527MF_00497_B415, 1, (STRLEN(?targetMotifMatchCigarP94527MF_00497_B415) - STRLEN(REPLACE(?targetMotifMatchCigarP94527MF_00497_B415, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1425), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP94527MF_00497_B415, 1, (STRLEN(?targetMotifMatchCigarP94527MF_00497_B415) - STRLEN(REPLACE(?targetMotifMatchCigarP94527MF_00497_B415, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1425), '}'), '')))), '[^-]', ''))) AS ?step2426) .
BIND(((?step2426 + ?targetMotifMatchRegionMatchBeginPositionMF_00497_B416) - 1) AS ?thisPositionOn140) .
BIND(?thisPositionOn140 AS ?thisPositionOn141) .
BIND(?this AS ?pfs2t427) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn140))) AS ?pfsb136) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn141))) AS ?pfse137) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn140, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00497a135')) AS ?annotation135) .
BIND(?this AS ?pfs134) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch432 faldo:location ?templateMotifSequenceMatchRegionP94527433 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP94527435 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP94527MF_00497_B428 .
?templateMotifSequenceMatchRegionP94527433 faldo:begin ?templateMotifSequenceMatchBeginP94527434 .
?templateMotifSequenceMatchBeginP94527434 faldo:position ?templateMotifSequenceMatchBeginPositionP94527429 ;
faldo:reference isoform:P94527-1 .
?templateMotifSequenceProfileAlignmentOperationP94527435 edam:has_input signature:MF_00497_B ;
rdf:type edam:operation_0300 .
?targetMotifMatch436 faldo:location ?targetMotifMatchRegionMatch437 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00497_B439 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP94527MF_00497_B430 .
?targetMotifMatchRegionMatch437 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00497_B438 .
?targetMotifMatchRegionMatchBeginMF_00497_B438 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00497_B431 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00497_B439 edam:has_input signature:MF_00497_B ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1385 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP94527MF_00497_B428, 1, (STRLEN(?templateMotifCigarP94527MF_00497_B428) - STRLEN(REPLACE(?templateMotifCigarP94527MF_00497_B428, CONCAT('^(?:-*[^-]){', STR(((274 - ?templateMotifSequenceMatchBeginPositionP94527429) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1440) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP94527MF_00497_B430, 1, (STRLEN(?targetMotifMatchCigarP94527MF_00497_B430) - STRLEN(REPLACE(?targetMotifMatchCigarP94527MF_00497_B430, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1440), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP94527MF_00497_B430, 1, (STRLEN(?targetMotifMatchCigarP94527MF_00497_B430) - STRLEN(REPLACE(?targetMotifMatchCigarP94527MF_00497_B430, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1440), '}'), '')))), '[^-]', ''))) AS ?step2441) .
BIND(((?step2441 + ?targetMotifMatchRegionMatchBeginPositionMF_00497_B431) - 1) AS ?thisPositionOn148) .
BIND(?thisPositionOn148 AS ?thisPositionOn149) .
BIND(?this AS ?pfs2t442) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn148))) AS ?pfsb144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn149))) AS ?pfse145) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn148, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00497a143')) AS ?annotation143) .
BIND(?this AS ?pfs142) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(?this AS ?case7) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1385 .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:183924 .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:183925 .
BIND(?this AS ?case10) .
}
}
"xsd:string |
