| http://purl.uniprot.org/unirules/MF_01263#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:447600 up:source unirule:MF_01263 .
_:447601 up:source unirule:MF_01263 .
_:447602 up:source unirule:MF_01263 .
_:447603 up:source unirule:MF_01263 .
_:447604 up:source unirule:MF_01263 .
_:447605 up:source unirule:MF_01263 .
_:447606 up:source unirule:MF_01263 .
_:447607 up:source unirule:MF_01263 .
_:447608 up:source unirule:MF_01263 .
_:447609 up:source unirule:MF_01263 .
_:447610 up:source unirule:MF_01263 .
_:447611 up:source unirule:MF_01263 .
_:447612 up:source unirule:MF_01263 .
_:447613 up:source unirule:MF_01263 .
_:447614 up:source unirule:MF_01263 .
_:447615 up:source unirule:MF_01263 .
_:447616 up:source unirule:MF_01263 .
_:447617 up:source unirule:MF_01263 .
_:447618 up:source unirule:MF_01263 .
_:447619 up:source unirule:MF_01263 .
_:447620 up:source unirule:MF_01263 .
_:447621 up:source unirule:MF_01263 .
_:447622 up:source unirule:MF_01263 .
_:447623 up:source unirule:MF_01263 .
_:447624 up:source unirule:MF_01263 .
_:447625 up:source unirule:MF_01263 .
_:447626 up:source unirule:MF_01263 .
_:447627 up:source unirule:MF_01263 .
_:447628 up:source unirule:MF_01263 .
_:447629 up:source unirule:MF_01263 .
_:447630 up:source unirule:MF_01263 .
_:447631 up:source unirule:MF_01263 .
_:447632 up:source unirule:MF_01263 .
_:447633 up:source unirule:MF_01263 .
_:447634 up:source unirule:MF_01263 .
_:447635 up:source unirule:MF_01263 .
_:447636 up:source unirule:MF_01263 .
_:447637 up:source unirule:MF_01263 .
_:447638 up:source unirule:MF_01263 .
_:447639 up:source unirule:MF_01263 .
_:447640 up:source unirule:MF_01263 .
_:447641 up:source unirule:MF_01263 .
_:447642 up:source unirule:MF_01263 .
_:447643 up:source unirule:MF_01263 .
_:447644 up:source unirule:MF_01263 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ,
?name4 ,
?name5 ;
up:annotation ?annotation7 ,
?annotation8 ,
?annotation10 ,
?annotation12 ,
?annotation13 ,
?annotation14 ,
?annotation15 ;
up:classifiedWith GO:0000049 ,
GO:0000166 ,
GO:0000287 ,
GO:0001680 ,
GO:0004810 ,
GO:0005524 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:548 ,
keyword:67 ,
keyword:692 ,
keyword:694 ,
keyword:808 ,
keyword:819 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.7.72' ;
up:fullName 'CCA-adding enzyme' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'CCA tRNA nucleotidyltransferase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'tRNA CCA-pyrophosphorylase' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'tRNA adenylyl-/cytidylyl- transferase' ;
rdf:type up:Structured_Name .
?name4 up:fullName 'tRNA nucleotidyltransferase' ;
rdf:type up:Structured_Name .
?name5 up:fullName 'tRNA-NT' ;
rdf:type up:Structured_Name .
?gene6 skos:prefLabel 'cca' .
?annotation7 a up:Function_Annotation ;
rdfs:comment "Catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. tRNA 3'-terminal CCA addition is required both for tRNA processing and repair. Also involved in tRNA surveillance by mediating tandem CCA addition to generate a CCACCA at the 3' terminus of unstable tRNAs. While stable tRNAs receive only 3'-terminal CCA, unstable tRNAs are marked with CCACCA and rapidly degraded." .
?annotation8 up:activity ?activity9 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity9 up:catalyticActivity ;
up:enzymeClass .
?annotation10 up:activity ?activity11 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity11 up:catalyticActivity .
?annotation12 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation13 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation14 a up:Annotation ;
rdfs:comment 'A single active site specifically recognizes both ATP and CTP and is responsible for their addition.' .
?annotation15 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. Bacterial CCA-adding enzyme type 3 subfamily.' .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:18420 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:18420 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:30616 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:37563 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:30616 .
?pfs51 up:annotation ?annotation52 .
?annotation52 faldo:begin ?pfsb53 ;
faldo:end ?pfse54 ;
up:ligand ?ligand55 ;
rdf:type up:Binding_Site_Annotation .
?pfsb53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand55 rdfs:subClassOf chebi:37563 .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
up:ligand ?ligand62 ;
rdf:type up:Binding_Site_Annotation .
?pfsb60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?ligand62 rdfs:subClassOf chebi:30616 .
?pfs65 up:annotation ?annotation66 .
?annotation66 faldo:begin ?pfsb67 ;
faldo:end ?pfse68 ;
up:ligand ?ligand69 ;
rdf:type up:Binding_Site_Annotation .
?pfsb67 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse68 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?ligand69 rdfs:subClassOf chebi:37563 .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
up:ligand ?ligand76 ;
rdf:type up:Binding_Site_Annotation .
?pfsb74 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn78 ;
rdf:type faldo:ExactPosition .
?ligand76 rdfs:subClassOf chebi:30616 .
?pfs79 up:annotation ?annotation80 .
?annotation80 faldo:begin ?pfsb81 ;
faldo:end ?pfse82 ;
up:ligand ?ligand83 ;
rdf:type up:Binding_Site_Annotation .
?pfsb81 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse82 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?ligand83 rdfs:subClassOf chebi:37563 .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
up:ligand ?ligand90 ;
rdf:type up:Binding_Site_Annotation .
?pfsb88 faldo:position ?thisPositionOn91 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?ligand90 rdfs:subClassOf chebi:30616 .
?pfs93 up:annotation ?annotation94 .
?annotation94 faldo:begin ?pfsb95 ;
faldo:end ?pfse96 ;
up:ligand ?ligand97 ;
rdf:type up:Binding_Site_Annotation .
?pfsb95 faldo:position ?thisPositionOn98 ;
rdf:type faldo:ExactPosition .
?pfse96 faldo:position ?thisPositionOn99 ;
rdf:type faldo:ExactPosition .
?ligand97 rdfs:subClassOf chebi:37563 .
?pfs100 up:annotation ?annotation101 .
?annotation101 faldo:begin ?pfsb102 ;
faldo:end ?pfse103 ;
up:ligand ?ligand104 ;
rdf:type up:Binding_Site_Annotation .
?pfsb102 faldo:position ?thisPositionOn105 ;
rdf:type faldo:ExactPosition .
?pfse103 faldo:position ?thisPositionOn106 ;
rdf:type faldo:ExactPosition .
?ligand104 rdfs:subClassOf chebi:30616 .
?pfs107 up:annotation ?annotation108 .
?annotation108 faldo:begin ?pfsb109 ;
faldo:end ?pfse110 ;
up:ligand ?ligand111 ;
rdf:type up:Binding_Site_Annotation .
?pfsb109 faldo:position ?thisPositionOn112 ;
rdf:type faldo:ExactPosition .
?pfse110 faldo:position ?thisPositionOn113 ;
rdf:type faldo:ExactPosition .
?ligand111 rdfs:subClassOf chebi:37563 .
?pfs114 up:annotation ?annotation115 .
?annotation115 faldo:begin ?pfsb116 ;
faldo:end ?pfse117 ;
up:ligand ?ligand118 ;
rdf:type up:Binding_Site_Annotation .
?pfsb116 faldo:position ?thisPositionOn119 ;
rdf:type faldo:ExactPosition .
?pfse117 faldo:position ?thisPositionOn120 ;
rdf:type faldo:ExactPosition .
?ligand118 rdfs:subClassOf chebi:30616 .
?pfs121 up:annotation ?annotation122 .
?annotation122 faldo:begin ?pfsb123 ;
faldo:end ?pfse124 ;
up:ligand ?ligand125 ;
rdf:type up:Binding_Site_Annotation .
?pfsb123 faldo:position ?thisPositionOn126 ;
rdf:type faldo:ExactPosition .
?pfse124 faldo:position ?thisPositionOn127 ;
rdf:type faldo:ExactPosition .
?ligand125 rdfs:subClassOf chebi:37563 .
_:447645 a rdf:Statement ;
up:attribution _:447600 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:447646 a rdf:Statement ;
up:attribution _:447601 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:447647 a rdf:Statement ;
up:attribution _:447602 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:447648 a rdf:Statement ;
up:attribution _:447603 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:447649 a rdf:Statement ;
up:attribution _:447604 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name4 .
_:447650 a rdf:Statement ;
up:attribution _:447605 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name5 .
_:447651 a rdf:Statement ;
up:attribution _:447606 ;
rdf:subject ?gene6 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene6 .
_:447652 a rdf:Statement ;
up:attribution _:447607 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:447653 a rdf:Statement ;
up:attribution _:447608 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:447654 a rdf:Statement ;
up:attribution _:447609 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:447655 a rdf:Statement ;
up:attribution _:447610 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:447656 a rdf:Statement ;
up:attribution _:447611 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:447657 a rdf:Statement ;
up:attribution _:447612 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:447658 a rdf:Statement ;
up:attribution _:447613 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:447659 a rdf:Statement ;
up:attribution _:447614 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:447660 a rdf:Statement ;
up:attribution _:447615 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:447661 a rdf:Statement ;
up:attribution _:447616 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:447662 a rdf:Statement ;
up:attribution _:447617 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:447663 a rdf:Statement ;
up:attribution _:447618 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:447664 a rdf:Statement ;
up:attribution _:447619 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:692 .
_:447665 a rdf:Statement ;
up:attribution _:447620 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:447666 a rdf:Statement ;
up:attribution _:447621 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:447667 a rdf:Statement ;
up:attribution _:447622 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:447668 a rdf:Statement ;
up:attribution _:447623 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000049 .
_:447669 a rdf:Statement ;
up:attribution _:447624 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000166 .
_:447670 a rdf:Statement ;
up:attribution _:447625 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:447671 a rdf:Statement ;
up:attribution _:447626 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004810 .
_:447672 a rdf:Statement ;
up:attribution _:447627 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:447673 a rdf:Statement ;
up:attribution _:447628 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0001680 .
_:447674 a rdf:Statement ;
up:source unirule:MF_01263 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:447675 a rdf:Statement ;
up:attribution _:447629 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:447676 a rdf:Statement ;
up:source unirule:MF_01263 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:447677 a rdf:Statement ;
up:attribution _:447630 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:447678 a rdf:Statement ;
up:source unirule:MF_01263 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:447679 a rdf:Statement ;
up:attribution _:447631 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:447680 a rdf:Statement ;
up:source unirule:MF_01263 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:447681 a rdf:Statement ;
up:attribution _:447632 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:447682 a rdf:Statement ;
up:source unirule:MF_01263 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:447683 a rdf:Statement ;
up:attribution _:447633 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:447684 a rdf:Statement ;
up:source unirule:MF_01263 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:447685 a rdf:Statement ;
up:attribution _:447634 ;
rdf:subject ?pfs51 ;
rdf:predicate up:annotation ;
rdf:object ?annotation52 .
_:447686 a rdf:Statement ;
up:source unirule:MF_01263 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:447687 a rdf:Statement ;
up:attribution _:447635 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:447688 a rdf:Statement ;
up:source unirule:MF_01263 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:447689 a rdf:Statement ;
up:attribution _:447636 ;
rdf:subject ?pfs65 ;
rdf:predicate up:annotation ;
rdf:object ?annotation66 .
_:447690 a rdf:Statement ;
up:source unirule:MF_01263 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:447691 a rdf:Statement ;
up:attribution _:447637 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:447692 a rdf:Statement ;
up:source unirule:MF_01263 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:447693 a rdf:Statement ;
up:attribution _:447638 ;
rdf:subject ?pfs79 ;
rdf:predicate up:annotation ;
rdf:object ?annotation80 .
_:447694 a rdf:Statement ;
up:source unirule:MF_01263 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:447695 a rdf:Statement ;
up:attribution _:447639 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:447696 a rdf:Statement ;
up:source unirule:MF_01263 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:447697 a rdf:Statement ;
up:attribution _:447640 ;
rdf:subject ?pfs93 ;
rdf:predicate up:annotation ;
rdf:object ?annotation94 .
_:447698 a rdf:Statement ;
up:source unirule:MF_01263 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:447699 a rdf:Statement ;
up:attribution _:447641 ;
rdf:subject ?pfs100 ;
rdf:predicate up:annotation ;
rdf:object ?annotation101 .
_:447700 a rdf:Statement ;
up:source unirule:MF_01263 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:447701 a rdf:Statement ;
up:attribution _:447642 ;
rdf:subject ?pfs107 ;
rdf:predicate up:annotation ;
rdf:object ?annotation108 .
_:447702 a rdf:Statement ;
up:source unirule:MF_01263 ;
rdf:subject ?pfs114 ;
rdf:predicate up:annotation ;
rdf:object ?annotation115 .
_:447703 a rdf:Statement ;
up:attribution _:447643 ;
rdf:subject ?pfs114 ;
rdf:predicate up:annotation ;
rdf:object ?annotation115 .
_:447704 a rdf:Statement ;
up:source unirule:MF_01263 ;
rdf:subject ?pfs121 ;
rdf:predicate up:annotation ;
rdf:object ?annotation122 .
_:447705 a rdf:Statement ;
up:attribution _:447644 ;
rdf:subject ?pfs121 ;
rdf:predicate up:annotation ;
rdf:object ?annotation122 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01263
#Rule MF_01263 Created by:? on:2005-07-29 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01263 .
?thisOrganism rdfs:subClassOf+ taxon:1239 .
BIND(URI(CONCAT(STR(?this), '#MF_01263a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a4')) AS ?name4) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a5')) AS ?name5) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a12')) AS ?annotation12) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a13')) AS ?annotation13) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a14')) AS ?annotation14) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a15')) AS ?annotation15) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1133 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1135 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7SIB1MF_01263128 .
?templateMotifSequenceMatchRegionQ7SIB1133 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1134 .
?templateMotifSequenceMatchBeginQ7SIB1134 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1129 ;
faldo:reference isoform:Q7SIB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ7SIB1135 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263139 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263130 .
?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263138 .
?targetMotifMatchRegionMatchBeginMF_01263138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263131 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01263139 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263128, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263128) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263128, CONCAT('^(?:-*[^-]){', STR(((40 - ?templateMotifSequenceMatchBeginPositionQ7SIB1129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263130, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263130) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263130, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263130) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_01263131) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch147 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1148 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1150 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7SIB1MF_01263143 .
?templateMotifSequenceMatchRegionQ7SIB1148 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1149 .
?templateMotifSequenceMatchBeginQ7SIB1149 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1144 ;
faldo:reference isoform:Q7SIB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ7SIB1150 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
?targetMotifMatch151 faldo:location ?targetMotifMatchRegionMatch152 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263154 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263145 .
?targetMotifMatchRegionMatch152 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263153 .
?targetMotifMatchRegionMatchBeginMF_01263153 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263146 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01263154 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263143, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263143) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263143, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionQ7SIB1144) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263145, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263145) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263145, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263145) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263145, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1155), '}'), '')))), '[^-]', ''))) AS ?step2156) .
BIND(((?step2156 + ?targetMotifMatchRegionMatchBeginPositionMF_01263146) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t157) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch162 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1163 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1165 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7SIB1MF_01263158 .
?templateMotifSequenceMatchRegionQ7SIB1163 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1164 .
?templateMotifSequenceMatchBeginQ7SIB1164 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1159 ;
faldo:reference isoform:Q7SIB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ7SIB1165 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
?targetMotifMatch166 faldo:location ?targetMotifMatchRegionMatch167 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263169 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263160 .
?targetMotifMatchRegionMatch167 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263168 .
?targetMotifMatchRegionMatchBeginMF_01263168 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263161 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01263169 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263158, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263158) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263158, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionQ7SIB1159) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263160, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263160) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263160, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263160) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263160, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1170), '}'), '')))), '[^-]', ''))) AS ?step2171) .
BIND(((?step2171 + ?targetMotifMatchRegionMatchBeginPositionMF_01263161) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t172) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch177 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1178 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1180 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7SIB1MF_01263173 .
?templateMotifSequenceMatchRegionQ7SIB1178 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1179 .
?templateMotifSequenceMatchBeginQ7SIB1179 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1174 ;
faldo:reference isoform:Q7SIB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ7SIB1180 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
?targetMotifMatch181 faldo:location ?targetMotifMatchRegionMatch182 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263184 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263175 .
?targetMotifMatchRegionMatch182 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263183 .
?targetMotifMatchRegionMatchBeginMF_01263183 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263176 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01263184 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263173, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263173) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263173, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionQ7SIB1174) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263175, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263175) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263175, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263175) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263175, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1185), '}'), '')))), '[^-]', ''))) AS ?step2186) .
BIND(((?step2186 + ?targetMotifMatchRegionMatchBeginPositionMF_01263176) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t187) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch192 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1193 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1195 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7SIB1MF_01263188 .
?templateMotifSequenceMatchRegionQ7SIB1193 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1194 .
?templateMotifSequenceMatchBeginQ7SIB1194 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1189 ;
faldo:reference isoform:Q7SIB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ7SIB1195 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
?targetMotifMatch196 faldo:location ?targetMotifMatchRegionMatch197 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263199 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263190 .
?targetMotifMatchRegionMatch197 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263198 .
?targetMotifMatchRegionMatchBeginMF_01263198 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263191 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01263199 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263188, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263188) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263188, CONCAT('^(?:-*[^-]){', STR(((30 - ?templateMotifSequenceMatchBeginPositionQ7SIB1189) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1200) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263190, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263190) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263190, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263190) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263190, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1200), '}'), '')))), '[^-]', ''))) AS ?step2201) .
BIND(((?step2201 + ?targetMotifMatchRegionMatchBeginPositionMF_01263191) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t202) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch207 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1208 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1210 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7SIB1MF_01263203 .
?templateMotifSequenceMatchRegionQ7SIB1208 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1209 .
?templateMotifSequenceMatchBeginQ7SIB1209 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1204 ;
faldo:reference isoform:Q7SIB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ7SIB1210 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
?targetMotifMatch211 faldo:location ?targetMotifMatchRegionMatch212 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263214 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263205 .
?targetMotifMatchRegionMatch212 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263213 .
?targetMotifMatchRegionMatchBeginMF_01263213 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263206 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01263214 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263203, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263203) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263203, CONCAT('^(?:-*[^-]){', STR(((30 - ?templateMotifSequenceMatchBeginPositionQ7SIB1204) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1215) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263205, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263205) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263205, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263205) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263205, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1215), '}'), '')))), '[^-]', ''))) AS ?step2216) .
BIND(((?step2216 + ?targetMotifMatchRegionMatchBeginPositionMF_01263206) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t217) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse54) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a52')) AS ?annotation52) .
BIND(?this AS ?pfs51) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch222 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1223 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1225 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7SIB1MF_01263218 .
?templateMotifSequenceMatchRegionQ7SIB1223 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1224 .
?templateMotifSequenceMatchBeginQ7SIB1224 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1219 ;
faldo:reference isoform:Q7SIB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ7SIB1225 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
?targetMotifMatch226 faldo:location ?targetMotifMatchRegionMatch227 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263229 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263220 .
?targetMotifMatchRegionMatch227 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263228 .
?targetMotifMatchRegionMatchBeginMF_01263228 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263221 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01263229 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263218, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263218) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263218, CONCAT('^(?:-*[^-]){', STR(((111 - ?templateMotifSequenceMatchBeginPositionQ7SIB1219) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1230) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263220, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263220) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263220, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263220) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263220, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1230), '}'), '')))), '[^-]', ''))) AS ?step2231) .
BIND(((?step2231 + ?targetMotifMatchRegionMatchBeginPositionMF_01263221) - 1) AS ?thisPositionOn63) .
BIND(?thisPositionOn63 AS ?thisPositionOn64) .
BIND(?this AS ?pfs1t232) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn63, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch237 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1238 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1240 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7SIB1MF_01263233 .
?templateMotifSequenceMatchRegionQ7SIB1238 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1239 .
?templateMotifSequenceMatchBeginQ7SIB1239 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1234 ;
faldo:reference isoform:Q7SIB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ7SIB1240 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
?targetMotifMatch241 faldo:location ?targetMotifMatchRegionMatch242 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263244 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263235 .
?targetMotifMatchRegionMatch242 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263243 .
?targetMotifMatchRegionMatchBeginMF_01263243 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263236 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01263244 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263233, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263233) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263233, CONCAT('^(?:-*[^-]){', STR(((111 - ?templateMotifSequenceMatchBeginPositionQ7SIB1234) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1245) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263235, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263235) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1245), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263235, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263235) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263235, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1245), '}'), '')))), '[^-]', ''))) AS ?step2246) .
BIND(((?step2246 + ?targetMotifMatchRegionMatchBeginPositionMF_01263236) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs1t247) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse68) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a66')) AS ?annotation66) .
BIND(?this AS ?pfs65) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch252 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1253 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1255 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7SIB1MF_01263248 .
?templateMotifSequenceMatchRegionQ7SIB1253 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1254 .
?templateMotifSequenceMatchBeginQ7SIB1254 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1249 ;
faldo:reference isoform:Q7SIB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ7SIB1255 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
?targetMotifMatch256 faldo:location ?targetMotifMatchRegionMatch257 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263259 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263250 .
?targetMotifMatchRegionMatch257 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263258 .
?targetMotifMatchRegionMatchBeginMF_01263258 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263251 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01263259 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263248, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263248) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263248, CONCAT('^(?:-*[^-]){', STR(((154 - ?templateMotifSequenceMatchBeginPositionQ7SIB1249) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1260) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263250, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263250) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263250, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263250, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263250) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263250, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1260), '}'), '')))), '[^-]', ''))) AS ?step2261) .
BIND(((?step2261 + ?targetMotifMatchRegionMatchBeginPositionMF_01263251) - 1) AS ?thisPositionOn77) .
BIND(?thisPositionOn77 AS ?thisPositionOn78) .
BIND(?this AS ?pfs1t262) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn78))) AS ?pfse75) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn77, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch267 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1268 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1270 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7SIB1MF_01263263 .
?templateMotifSequenceMatchRegionQ7SIB1268 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1269 .
?templateMotifSequenceMatchBeginQ7SIB1269 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1264 ;
faldo:reference isoform:Q7SIB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ7SIB1270 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
?targetMotifMatch271 faldo:location ?targetMotifMatchRegionMatch272 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263274 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263265 .
?targetMotifMatchRegionMatch272 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263273 .
?targetMotifMatchRegionMatchBeginMF_01263273 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263266 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01263274 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263263, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263263) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263263, CONCAT('^(?:-*[^-]){', STR(((154 - ?templateMotifSequenceMatchBeginPositionQ7SIB1264) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1275) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263265, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263265) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263265, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263265) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263265, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1275), '}'), '')))), '[^-]', ''))) AS ?step2276) .
BIND(((?step2276 + ?targetMotifMatchRegionMatchBeginPositionMF_01263266) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs1t277) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse82) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a80')) AS ?annotation80) .
BIND(?this AS ?pfs79) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch282 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1283 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1285 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7SIB1MF_01263278 .
?templateMotifSequenceMatchRegionQ7SIB1283 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1284 .
?templateMotifSequenceMatchBeginQ7SIB1284 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1279 ;
faldo:reference isoform:Q7SIB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ7SIB1285 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
?targetMotifMatch286 faldo:location ?targetMotifMatchRegionMatch287 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263289 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263280 .
?targetMotifMatchRegionMatch287 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263288 .
?targetMotifMatchRegionMatchBeginMF_01263288 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263281 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01263289 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263278, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263278) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263278, CONCAT('^(?:-*[^-]){', STR(((157 - ?templateMotifSequenceMatchBeginPositionQ7SIB1279) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1290) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263280, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263280) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1290), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263280, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263280) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1290), '}'), '')))), '[^-]', ''))) AS ?step2291) .
BIND(((?step2291 + ?targetMotifMatchRegionMatchBeginPositionMF_01263281) - 1) AS ?thisPositionOn91) .
BIND(?thisPositionOn91 AS ?thisPositionOn92) .
BIND(?this AS ?pfs1t292) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn91))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfse89) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn91, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch297 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1298 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1300 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7SIB1MF_01263293 .
?templateMotifSequenceMatchRegionQ7SIB1298 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1299 .
?templateMotifSequenceMatchBeginQ7SIB1299 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1294 ;
faldo:reference isoform:Q7SIB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ7SIB1300 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
?targetMotifMatch301 faldo:location ?targetMotifMatchRegionMatch302 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263304 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263295 .
?targetMotifMatchRegionMatch302 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263303 .
?targetMotifMatchRegionMatchBeginMF_01263303 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263296 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01263304 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263293, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263293) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263293, CONCAT('^(?:-*[^-]){', STR(((157 - ?templateMotifSequenceMatchBeginPositionQ7SIB1294) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1305) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263295, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263295) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1305), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263295, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263295) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1305), '}'), '')))), '[^-]', ''))) AS ?step2306) .
BIND(((?step2306 + ?targetMotifMatchRegionMatchBeginPositionMF_01263296) - 1) AS ?thisPositionOn98) .
BIND(?thisPositionOn98 AS ?thisPositionOn99) .
BIND(?this AS ?pfs1t307) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn98))) AS ?pfsb95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn99))) AS ?pfse96) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn98, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a94')) AS ?annotation94) .
BIND(?this AS ?pfs93) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch312 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1313 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1315 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7SIB1MF_01263308 .
?templateMotifSequenceMatchRegionQ7SIB1313 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1314 .
?templateMotifSequenceMatchBeginQ7SIB1314 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1309 ;
faldo:reference isoform:Q7SIB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ7SIB1315 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
?targetMotifMatch316 faldo:location ?targetMotifMatchRegionMatch317 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263319 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263310 .
?targetMotifMatchRegionMatch317 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263318 .
?targetMotifMatchRegionMatchBeginMF_01263318 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263311 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01263319 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263308, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263308) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263308, CONCAT('^(?:-*[^-]){', STR(((160 - ?templateMotifSequenceMatchBeginPositionQ7SIB1309) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1320) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263310, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263310) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263310, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1320), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263310, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263310) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263310, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1320), '}'), '')))), '[^-]', ''))) AS ?step2321) .
BIND(((?step2321 + ?targetMotifMatchRegionMatchBeginPositionMF_01263311) - 1) AS ?thisPositionOn105) .
BIND(?thisPositionOn105 AS ?thisPositionOn106) .
BIND(?this AS ?pfs1t322) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn105))) AS ?pfsb102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn106))) AS ?pfse103) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn105, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a101')) AS ?annotation101) .
BIND(?this AS ?pfs100) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch327 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1328 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1330 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7SIB1MF_01263323 .
?templateMotifSequenceMatchRegionQ7SIB1328 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1329 .
?templateMotifSequenceMatchBeginQ7SIB1329 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1324 ;
faldo:reference isoform:Q7SIB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ7SIB1330 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
?targetMotifMatch331 faldo:location ?targetMotifMatchRegionMatch332 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263334 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263325 .
?targetMotifMatchRegionMatch332 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263333 .
?targetMotifMatchRegionMatchBeginMF_01263333 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263326 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01263334 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263323, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263323) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263323, CONCAT('^(?:-*[^-]){', STR(((160 - ?templateMotifSequenceMatchBeginPositionQ7SIB1324) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1335) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263325, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263325) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263325, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1335), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263325, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263325) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263325, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1335), '}'), '')))), '[^-]', ''))) AS ?step2336) .
BIND(((?step2336 + ?targetMotifMatchRegionMatchBeginPositionMF_01263326) - 1) AS ?thisPositionOn112) .
BIND(?thisPositionOn112 AS ?thisPositionOn113) .
BIND(?this AS ?pfs1t337) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn112))) AS ?pfsb109) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn113))) AS ?pfse110) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn112, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a108')) AS ?annotation108) .
BIND(?this AS ?pfs107) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch342 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1343 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1345 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7SIB1MF_01263338 .
?templateMotifSequenceMatchRegionQ7SIB1343 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1344 .
?templateMotifSequenceMatchBeginQ7SIB1344 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1339 ;
faldo:reference isoform:Q7SIB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ7SIB1345 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
?targetMotifMatch346 faldo:location ?targetMotifMatchRegionMatch347 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263349 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263340 .
?targetMotifMatchRegionMatch347 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263348 .
?targetMotifMatchRegionMatchBeginMF_01263348 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263341 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01263349 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263338, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263338) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263338, CONCAT('^(?:-*[^-]){', STR(((163 - ?templateMotifSequenceMatchBeginPositionQ7SIB1339) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1350) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263340, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263340) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263340, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1350), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263340, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263340) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263340, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1350), '}'), '')))), '[^-]', ''))) AS ?step2351) .
BIND(((?step2351 + ?targetMotifMatchRegionMatchBeginPositionMF_01263341) - 1) AS ?thisPositionOn119) .
BIND(?thisPositionOn119 AS ?thisPositionOn120) .
BIND(?this AS ?pfs1t352) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn119))) AS ?pfsb116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn120))) AS ?pfse117) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn119, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a115')) AS ?annotation115) .
BIND(?this AS ?pfs114) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch357 faldo:location ?templateMotifSequenceMatchRegionQ7SIB1358 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ7SIB1360 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ7SIB1MF_01263353 .
?templateMotifSequenceMatchRegionQ7SIB1358 faldo:begin ?templateMotifSequenceMatchBeginQ7SIB1359 .
?templateMotifSequenceMatchBeginQ7SIB1359 faldo:position ?templateMotifSequenceMatchBeginPositionQ7SIB1354 ;
faldo:reference isoform:Q7SIB1-1 .
?templateMotifSequenceProfileAlignmentOperationQ7SIB1360 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
?targetMotifMatch361 faldo:location ?targetMotifMatchRegionMatch362 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01263364 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ7SIB1MF_01263355 .
?targetMotifMatchRegionMatch362 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01263363 .
?targetMotifMatchRegionMatchBeginMF_01263363 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01263356 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01263364 edam:has_input signature:MF_01263 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ7SIB1MF_01263353, 1, (STRLEN(?templateMotifCigarQ7SIB1MF_01263353) - STRLEN(REPLACE(?templateMotifCigarQ7SIB1MF_01263353, CONCAT('^(?:-*[^-]){', STR(((163 - ?templateMotifSequenceMatchBeginPositionQ7SIB1354) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1365) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263355, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263355) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263355, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1365), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ7SIB1MF_01263355, 1, (STRLEN(?targetMotifMatchCigarQ7SIB1MF_01263355) - STRLEN(REPLACE(?targetMotifMatchCigarQ7SIB1MF_01263355, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1365), '}'), '')))), '[^-]', ''))) AS ?step2366) .
BIND(((?step2366 + ?targetMotifMatchRegionMatchBeginPositionMF_01263356) - 1) AS ?thisPositionOn126) .
BIND(?thisPositionOn126 AS ?thisPositionOn127) .
BIND(?this AS ?pfs1t367) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn126))) AS ?pfsb123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn127))) AS ?pfse124) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn126, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01263a122')) AS ?annotation122) .
BIND(?this AS ?pfs121) .
}
}
"xsd:string |
