| http://purl.uniprot.org/unirules/MF_01338#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:480415 up:source unirule:MF_01338 .
_:480416 up:source unirule:MF_01338 .
_:480417 up:source unirule:MF_01338 .
_:480418 up:source unirule:MF_01338 .
_:480419 up:source unirule:MF_01338 .
_:480420 up:source unirule:MF_01338 .
_:480421 up:source unirule:MF_01338 .
_:480422 up:source unirule:MF_01338 .
_:480423 up:source unirule:MF_01338 .
_:480424 up:source unirule:MF_01338 .
_:480425 up:source unirule:MF_01338 .
_:480426 up:source unirule:MF_01338 .
_:480427 up:source unirule:MF_01338 .
_:480428 up:source unirule:MF_01338 .
_:480429 up:source unirule:MF_01338 .
_:480430 up:source unirule:MF_01338 .
_:480431 up:source unirule:MF_01338 .
_:480432 up:source unirule:MF_01338 .
_:480433 up:source unirule:MF_01338 .
_:480434 up:source unirule:MF_01338 .
_:480435 up:source unirule:MF_01338 .
_:480436 up:source unirule:MF_01338 .
_:480437 up:source unirule:MF_01338 .
_:480438 up:source unirule:MF_01338 .
_:480439 up:source unirule:MF_01338 .
_:480440 up:source unirule:MF_01338 .
_:480441 up:source unirule:MF_01338 .
_:480442 up:source unirule:MF_01338 .
_:480443 up:source unirule:MF_01338 .
_:480444 up:source unirule:MF_01338 .
_:480445 up:source unirule:MF_01338 .
_:480446 up:source unirule:MF_01338 .
_:480447 up:source unirule:MF_01338 .
_:480448 up:source unirule:MF_01338 .
_:480449 up:source unirule:MF_01338 .
_:480450 up:source unirule:MF_01338 .
_:480451 up:source unirule:MF_01338 .
_:480452 up:source unirule:MF_01338 .
_:480453 up:source unirule:MF_01338 .
_:480454 up:source unirule:MF_01338 .
_:480455 up:source unirule:MF_01338 .
_:480456 up:source unirule:MF_01338 .
_:480457 up:source unirule:MF_01338 .
_:480458 up:source unirule:MF_01338 .
_:480459 up:source unirule:MF_01338 .
_:480460 up:source unirule:MF_01338 .
?this up:annotation ?annotation0 ,
?annotation2 ,
?annotation4 ,
?annotation5 ;
up:classifiedWith GO:0015977 ,
GO:0016984 ,
GO:0019253 ,
keyword:113 ,
keyword:120 ,
keyword:456 ,
keyword:503 ,
keyword:560 .
?annotation0 up:activity ?activity1 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity1 up:catalyticActivity ;
up:enzymeClass .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity .
?annotation4 a up:Annotation ;
rdfs:comment "The basic functional RuBisCO is composed of a large chain homodimer in a 'head-to-tail' conformation. In form I RuBisCO this homodimer is arranged in a barrel-like tetramer with the small subunits forming a tetrameric 'cap' on each end of the 'barrel'." .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the RuBisCO large chain family. Type I subfamily.' .
?case6 up:classifiedWith GO:0000287 ,
keyword:460 ,
keyword:479 .
?case7 up:classifiedWith keyword:1015 .
?case8 up:classifiedWith keyword:488 .
?case9 up:classifiedWith GO:0009507 .
?case10 up:classifiedWith keyword:7 .
?case12 up:classifiedWith GO:0031470 ,
keyword:1282 .
?case13 up:classifiedWith keyword:602 .
?case14 up:precursor "true"^^xsd:boolean ;
up:recommendedName ?name15 .
?name15 up:ecName '4.1.1.39' ;
up:fullName 'Ribulose bisphosphate carboxylase large chain' ;
up:shortName 'RuBisCO large subunit' ;
rdf:type up:Structured_Name .
?case16 up:classifiedWith keyword:601 .
?case17 up:recommendedName ?name18 .
?name18 up:ecName '4.1.1.39' ;
up:fullName 'Ribulose bisphosphate carboxylase large chain' ;
up:shortName 'RuBisCO large subunit' ;
rdf:type up:Structured_Name .
?case19 up:recommendedName ?name20 .
?name20 up:ecName '4.1.1.39' ;
up:fullName 'Ribulose bisphosphate carboxylase large chain' ;
up:shortName 'RuBisCO large subunit' ;
rdf:type up:Structured_Name .
?case21 up:recommendedName ?name22 .
?name22 up:ecName '4.1.1.39' ;
up:fullName 'Ribulose bisphosphate carboxylase large chain' ;
up:shortName 'RuBisCO large subunit' ;
rdf:type up:Structured_Name .
?pfs23 up:annotation ?annotation24 ,
?annotation30 ,
?annotation36 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'via carbamate group' .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:18420 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:18420 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:18420 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
rdf:type up:Disulfide_Bond_Annotation ;
rdfs:comment 'Interchain; in linked form' .
?pfsb44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N-acetylproline' .
?pfsb50 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6,N6,N6-trimethyllysine' .
?pfsb56 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb62 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
?pfs66 up:annotation ?annotation67 .
?annotation67 faldo:begin ?pfsb68 ;
faldo:end ?pfse69 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb68 faldo:position ?thisPositionOn70 ;
rdf:type faldo:ExactPosition .
?pfse69 faldo:position ?thisPositionOn71 ;
rdf:type faldo:ExactPosition .
?pfs72 up:annotation ?annotation73 .
?annotation73 faldo:begin ?pfsb74 ;
faldo:end ?pfse75 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb74 faldo:position ?thisPositionOn76 ;
rdf:type faldo:ExactPosition .
?pfse75 faldo:position ?thisPositionOn77 ;
rdf:type faldo:ExactPosition .
?pfs78 up:annotation ?annotation79 .
?annotation79 faldo:begin ?pfsb80 ;
faldo:end ?pfse81 ;
up:ligand ?ligand82 ;
rdf:type up:Binding_Site_Annotation ;
rdfs:comment 'in homodimeric partner' .
?pfsb80 faldo:position ?thisPositionOn84 ;
rdf:type faldo:ExactPosition .
?pfse81 faldo:position ?thisPositionOn85 ;
rdf:type faldo:ExactPosition .
?ligand82 rdfs:subClassOf ?molecule83 .
?molecule83 rdfs:label 'substrate' .
?pfs86 up:annotation ?annotation87 .
?annotation87 faldo:begin ?pfsb88 ;
faldo:end ?pfse89 ;
up:ligand ?ligand90 ;
rdf:type up:Binding_Site_Annotation .
?pfsb88 faldo:position ?thisPositionOn92 ;
rdf:type faldo:ExactPosition .
?pfse89 faldo:position ?thisPositionOn93 ;
rdf:type faldo:ExactPosition .
?ligand90 rdfs:subClassOf ?molecule91 .
?molecule91 rdfs:label 'substrate' .
?pfs94 up:annotation ?annotation95 .
?annotation95 faldo:begin ?pfsb96 ;
faldo:end ?pfse97 ;
up:ligand ?ligand98 ;
rdf:type up:Binding_Site_Annotation .
?pfsb96 faldo:position ?thisPositionOn100 ;
rdf:type faldo:ExactPosition .
?pfse97 faldo:position ?thisPositionOn101 ;
rdf:type faldo:ExactPosition .
?ligand98 rdfs:subClassOf ?molecule99 .
?molecule99 rdfs:label 'substrate' .
?pfs102 up:annotation ?annotation103 .
?annotation103 faldo:begin ?pfsb104 ;
faldo:end ?pfse105 ;
up:ligand ?ligand106 ;
rdf:type up:Binding_Site_Annotation .
?pfsb104 faldo:position ?thisPositionOn108 ;
rdf:type faldo:ExactPosition .
?pfse105 faldo:position ?thisPositionOn109 ;
rdf:type faldo:ExactPosition .
?ligand106 rdfs:subClassOf ?molecule107 .
?molecule107 rdfs:label 'substrate' .
?pfs110 up:annotation ?annotation111 .
?annotation111 faldo:begin ?pfsb112 ;
faldo:end ?pfse113 ;
up:ligand ?ligand114 ;
rdf:type up:Binding_Site_Annotation .
?pfsb112 faldo:position ?thisPositionOn116 ;
rdf:type faldo:ExactPosition .
?pfse113 faldo:position ?thisPositionOn117 ;
rdf:type faldo:ExactPosition .
?ligand114 rdfs:subClassOf ?molecule115 .
?molecule115 rdfs:label 'substrate' .
?pfs118 up:annotation ?annotation119 .
?annotation119 faldo:begin ?pfsb120 ;
faldo:end ?pfse121 ;
up:ligand ?ligand122 ;
rdf:type up:Binding_Site_Annotation .
?pfsb120 faldo:position ?thisPositionOn124 ;
rdf:type faldo:ExactPosition .
?pfse121 faldo:position ?thisPositionOn125 ;
rdf:type faldo:ExactPosition .
?ligand122 rdfs:subClassOf ?molecule123 .
?molecule123 rdfs:label 'substrate' .
?pfs126 up:annotation ?annotation127 .
?annotation127 faldo:begin ?pfsb128 ;
faldo:end ?pfse129 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-carboxylysine' .
?pfsb128 faldo:position ?thisPositionOn130 ;
rdf:type faldo:ExactPosition .
?pfse129 faldo:position ?thisPositionOn131 ;
rdf:type faldo:ExactPosition .
?pfs132 up:annotation ?annotation133 .
?annotation133 faldo:begin ?pfsb134 ;
faldo:end ?pfse135 ;
rdf:type up:Propeptide_Annotation .
?pfsb134 faldo:position ?thisPositionOn136 ;
rdf:type faldo:ExactPosition .
?pfse135 faldo:position ?thisPositionOn137 ;
rdf:type faldo:ExactPosition .
?pfs138 up:annotation ?annotation139 .
?annotation139 faldo:begin ?pfsb140 ;
faldo:end ?pfse141 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Ribulose bisphosphate carboxylase large chain' .
?pfsb140 faldo:position ?thisPositionOn142 ;
rdf:type faldo:ExactPosition .
?pfse141 faldo:position ?thisPositionOn143 ;
rdf:type faldo:ExactPosition .
_:480461 a rdf:Statement ;
up:attribution _:480415 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:480462 a rdf:Statement ;
up:attribution _:480416 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:480463 a rdf:Statement ;
up:attribution _:480417 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:480464 a rdf:Statement ;
up:attribution _:480418 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:480465 a rdf:Statement ;
up:attribution _:480419 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:113 .
_:480466 a rdf:Statement ;
up:attribution _:480420 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:120 .
_:480467 a rdf:Statement ;
up:attribution _:480421 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:480468 a rdf:Statement ;
up:attribution _:480422 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:503 .
_:480469 a rdf:Statement ;
up:attribution _:480423 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:480470 a rdf:Statement ;
up:attribution _:480424 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015977 .
_:480471 a rdf:Statement ;
up:attribution _:480425 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016984 .
_:480472 a rdf:Statement ;
up:attribution _:480426 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019253 .
_:480473 a rdf:Statement ;
up:attribution _:480427 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:480474 a rdf:Statement ;
up:attribution _:480428 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:480475 a rdf:Statement ;
up:attribution _:480429 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:480476 a rdf:Statement ;
up:attribution _:480430 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:480477 a rdf:Statement ;
up:attribution _:480431 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:488 .
_:480478 a rdf:Statement ;
up:attribution _:480432 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009507 .
_:480479 a rdf:Statement ;
up:attribution _:480433 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
_:480480 a rdf:Statement ;
up:attribution _:480434 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1282 .
_:480481 a rdf:Statement ;
up:attribution _:480435 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0031470 .
_:480482 a rdf:Statement ;
up:attribution _:480436 ;
rdf:subject ?case13 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:602 .
_:480483 a rdf:Statement ;
up:attribution _:480437 ;
rdf:subject ?case14 ;
rdf:predicate up:recommendedName ;
rdf:object ?name15 .
_:480484 a rdf:Statement ;
up:attribution _:480438 ;
rdf:subject ?case14 ;
rdf:predicate up:precursor ;
rdf:object "true"^^xsd:boolean .
_:480485 a rdf:Statement ;
up:attribution _:480439 ;
rdf:subject ?case16 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:601 .
_:480486 a rdf:Statement ;
up:attribution _:480440 ;
rdf:subject ?case17 ;
rdf:predicate up:recommendedName ;
rdf:object ?name18 .
_:480487 a rdf:Statement ;
up:attribution _:480441 ;
rdf:subject ?case19 ;
rdf:predicate up:recommendedName ;
rdf:object ?name20 .
_:480488 a rdf:Statement ;
up:attribution _:480442 ;
rdf:subject ?case21 ;
rdf:predicate up:recommendedName ;
rdf:object ?name22 .
_:480489 a rdf:Statement ;
up:source unirule:MF_01338 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:480490 a rdf:Statement ;
up:attribution _:480443 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:480491 a rdf:Statement ;
up:source unirule:MF_01338 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:480492 a rdf:Statement ;
up:attribution _:480444 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:480493 a rdf:Statement ;
up:source unirule:MF_01338 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:480494 a rdf:Statement ;
up:attribution _:480445 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:480495 a rdf:Statement ;
up:source unirule:MF_01338 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:480496 a rdf:Statement ;
up:attribution _:480446 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:480497 a rdf:Statement ;
up:source unirule:MF_01338 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:480498 a rdf:Statement ;
up:attribution _:480447 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:480499 a rdf:Statement ;
up:source unirule:MF_01338 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:480500 a rdf:Statement ;
up:attribution _:480448 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:480501 a rdf:Statement ;
up:source unirule:MF_01338 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:480502 a rdf:Statement ;
up:attribution _:480449 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:480503 a rdf:Statement ;
up:source unirule:MF_01338 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:480504 a rdf:Statement ;
up:attribution _:480450 ;
rdf:subject ?pfs66 ;
rdf:predicate up:annotation ;
rdf:object ?annotation67 .
_:480505 a rdf:Statement ;
up:source unirule:MF_01338 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:480506 a rdf:Statement ;
up:attribution _:480451 ;
rdf:subject ?pfs72 ;
rdf:predicate up:annotation ;
rdf:object ?annotation73 .
_:480507 a rdf:Statement ;
up:source unirule:MF_01338 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:480508 a rdf:Statement ;
up:attribution _:480452 ;
rdf:subject ?pfs78 ;
rdf:predicate up:annotation ;
rdf:object ?annotation79 .
_:480509 a rdf:Statement ;
up:source unirule:MF_01338 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:480510 a rdf:Statement ;
up:attribution _:480453 ;
rdf:subject ?pfs86 ;
rdf:predicate up:annotation ;
rdf:object ?annotation87 .
_:480511 a rdf:Statement ;
up:source unirule:MF_01338 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:480512 a rdf:Statement ;
up:attribution _:480454 ;
rdf:subject ?pfs94 ;
rdf:predicate up:annotation ;
rdf:object ?annotation95 .
_:480513 a rdf:Statement ;
up:source unirule:MF_01338 ;
rdf:subject ?pfs102 ;
rdf:predicate up:annotation ;
rdf:object ?annotation103 .
_:480514 a rdf:Statement ;
up:attribution _:480455 ;
rdf:subject ?pfs102 ;
rdf:predicate up:annotation ;
rdf:object ?annotation103 .
_:480515 a rdf:Statement ;
up:source unirule:MF_01338 ;
rdf:subject ?pfs110 ;
rdf:predicate up:annotation ;
rdf:object ?annotation111 .
_:480516 a rdf:Statement ;
up:attribution _:480456 ;
rdf:subject ?pfs110 ;
rdf:predicate up:annotation ;
rdf:object ?annotation111 .
_:480517 a rdf:Statement ;
up:source unirule:MF_01338 ;
rdf:subject ?pfs118 ;
rdf:predicate up:annotation ;
rdf:object ?annotation119 .
_:480518 a rdf:Statement ;
up:attribution _:480457 ;
rdf:subject ?pfs118 ;
rdf:predicate up:annotation ;
rdf:object ?annotation119 .
_:480519 a rdf:Statement ;
up:source unirule:MF_01338 ;
rdf:subject ?pfs126 ;
rdf:predicate up:annotation ;
rdf:object ?annotation127 .
_:480520 a rdf:Statement ;
up:attribution _:480458 ;
rdf:subject ?pfs126 ;
rdf:predicate up:annotation ;
rdf:object ?annotation127 .
_:480521 a rdf:Statement ;
up:source unirule:MF_01338 ;
rdf:subject ?pfs132 ;
rdf:predicate up:annotation ;
rdf:object ?annotation133 .
_:480522 a rdf:Statement ;
up:attribution _:480459 ;
rdf:subject ?pfs132 ;
rdf:predicate up:annotation ;
rdf:object ?annotation133 .
_:480523 a rdf:Statement ;
up:source unirule:MF_01338 ;
rdf:subject ?pfs138 ;
rdf:predicate up:annotation ;
rdf:object ?annotation139 .
_:480524 a rdf:Statement ;
up:attribution _:480460 ;
rdf:subject ?pfs138 ;
rdf:predicate up:annotation ;
rdf:object ?annotation139 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_01338
#Rule MF_01338 Created by:? on:2005-08-05 Modified by:Edouard de Castro on:2024-09-02
{
VALUES ?supertaxon144 {taxon:1117 taxon:1224 taxon:201174 taxon:74201}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01338 .
?thisOrganism rdfs:subClassOf+ ?supertaxon144 .
} UNION {
?this rdfs:seeAlso signature:MF_01338 .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
} UNION {
?this up:encodedIn up:Cyanelle .
} UNION {
?this up:encodedIn up:Apicoplast .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
} UNION {
?this up:encodedIn up:Non-photosynthetic_plastid .
}
}
BIND(URI(CONCAT(STR(?this), '#MF_01338a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_01338a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_01338a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_01338a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch149 faldo:location ?templateMotifSequenceMatchRegionP00876150 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00876152 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00876MF_01338145 .
?templateMotifSequenceMatchRegionP00876150 faldo:begin ?templateMotifSequenceMatchBeginP00876151 .
?templateMotifSequenceMatchBeginP00876151 faldo:position ?templateMotifSequenceMatchBeginPositionP00876146 ;
faldo:reference isoform:P00876-1 .
?templateMotifSequenceProfileAlignmentOperationP00876152 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
?targetMotifMatch153 faldo:location ?targetMotifMatchRegionMatch154 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01338156 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00876MF_01338147 .
?targetMotifMatchRegionMatch154 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01338155 .
?targetMotifMatchRegionMatchBeginMF_01338155 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01338148 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01338156 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00876MF_01338145, 1, (STRLEN(?templateMotifCigarP00876MF_01338145) - STRLEN(REPLACE(?templateMotifCigarP00876MF_01338145, CONCAT('^(?:-*[^-]){', STR(((201 - ?templateMotifSequenceMatchBeginPositionP00876146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00876MF_01338147, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338147) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00876MF_01338147, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338147) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) .
BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_01338148) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t159) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'K')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00876MF_01338145, 1, (STRLEN(?templateMotifCigarP00876MF_01338145) - STRLEN(REPLACE(?templateMotifCigarP00876MF_01338145, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionP00876146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00876MF_01338147, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338147) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00876MF_01338147, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338147) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), '')))), '[^-]', ''))) AS ?step2161) .
BIND(((?step2161 + ?targetMotifMatchRegionMatchBeginPositionMF_01338148) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t162) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00876MF_01338145, 1, (STRLEN(?templateMotifCigarP00876MF_01338145) - STRLEN(REPLACE(?templateMotifCigarP00876MF_01338145, CONCAT('^(?:-*[^-]){', STR(((204 - ?templateMotifSequenceMatchBeginPositionP00876146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00876MF_01338147, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338147) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00876MF_01338147, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338147) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), '')))), '[^-]', ''))) AS ?step2164) .
BIND(((?step2164 + ?targetMotifMatchRegionMatchBeginPositionMF_01338148) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t165) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'E')) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch170 faldo:location ?templateMotifSequenceMatchRegionP00876171 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00876173 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00876MF_01338166 .
?templateMotifSequenceMatchRegionP00876171 faldo:begin ?templateMotifSequenceMatchBeginP00876172 .
?templateMotifSequenceMatchBeginP00876172 faldo:position ?templateMotifSequenceMatchBeginPositionP00876167 ;
faldo:reference isoform:P00876-1 .
?templateMotifSequenceProfileAlignmentOperationP00876173 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
?targetMotifMatch174 faldo:location ?targetMotifMatchRegionMatch175 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01338177 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00876MF_01338168 .
?targetMotifMatchRegionMatch175 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01338176 .
?targetMotifMatchRegionMatchBeginMF_01338176 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01338169 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01338177 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00876MF_01338166, 1, (STRLEN(?templateMotifCigarP00876MF_01338166) - STRLEN(REPLACE(?templateMotifCigarP00876MF_01338166, CONCAT('^(?:-*[^-]){', STR(((247 - ?templateMotifSequenceMatchBeginPositionP00876167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00876MF_01338168, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338168) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00876MF_01338168, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338168) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) .
BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_01338169) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs2t180) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_01338a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch185 faldo:location ?templateMotifSequenceMatchRegionP00876186 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00876188 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00876MF_01338181 .
?templateMotifSequenceMatchRegionP00876186 faldo:begin ?templateMotifSequenceMatchBeginP00876187 .
?templateMotifSequenceMatchBeginP00876187 faldo:position ?templateMotifSequenceMatchBeginPositionP00876182 ;
faldo:reference isoform:P00876-1 .
?templateMotifSequenceProfileAlignmentOperationP00876188 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
?targetMotifMatch189 faldo:location ?targetMotifMatchRegionMatch190 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01338192 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00876MF_01338183 .
?targetMotifMatchRegionMatch190 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01338191 .
?targetMotifMatchRegionMatchBeginMF_01338191 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01338184 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01338192 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_15) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00876MF_01338181, 1, (STRLEN(?templateMotifCigarP00876MF_01338181) - STRLEN(REPLACE(?templateMotifCigarP00876MF_01338181, CONCAT('^(?:-*[^-]){', STR(((3 - ?templateMotifSequenceMatchBeginPositionP00876182) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00876MF_01338183, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338183) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00876MF_01338183, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338183) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338183, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1193), '}'), '')))), '[^-]', ''))) AS ?step2194) .
BIND(((?step2194 + ?targetMotifMatchRegionMatchBeginPositionMF_01338184) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs3t195) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'P')) .
BIND(URI(CONCAT(STR(?this), '#MF_01338a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch200 faldo:location ?templateMotifSequenceMatchRegionP00876201 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00876203 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00876MF_01338196 .
?templateMotifSequenceMatchRegionP00876201 faldo:begin ?templateMotifSequenceMatchBeginP00876202 .
?templateMotifSequenceMatchBeginP00876202 faldo:position ?templateMotifSequenceMatchBeginPositionP00876197 ;
faldo:reference isoform:P00876-1 .
?templateMotifSequenceProfileAlignmentOperationP00876203 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
?targetMotifMatch204 faldo:location ?targetMotifMatchRegionMatch205 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01338207 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00876MF_01338198 .
?targetMotifMatchRegionMatch205 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01338206 .
?targetMotifMatchRegionMatchBeginMF_01338206 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01338199 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01338207 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_16) .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00876MF_01338196, 1, (STRLEN(?templateMotifCigarP00876MF_01338196) - STRLEN(REPLACE(?templateMotifCigarP00876MF_01338196, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionP00876197) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1208) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00876MF_01338198, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338198) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1208), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00876MF_01338198, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338198) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338198, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1208), '}'), '')))), '[^-]', ''))) AS ?step2209) .
BIND(((?step2209 + ?targetMotifMatchRegionMatchBeginPositionMF_01338199) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs4t210) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01338a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch215 faldo:location ?templateMotifSequenceMatchRegionP00876216 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00876218 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00876MF_01338211 .
?templateMotifSequenceMatchRegionP00876216 faldo:begin ?templateMotifSequenceMatchBeginP00876217 .
?templateMotifSequenceMatchBeginP00876217 faldo:position ?templateMotifSequenceMatchBeginPositionP00876212 ;
faldo:reference isoform:P00876-1 .
?templateMotifSequenceProfileAlignmentOperationP00876218 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
?targetMotifMatch219 faldo:location ?targetMotifMatchRegionMatch220 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01338222 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00876MF_01338213 .
?targetMotifMatchRegionMatch220 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01338221 .
?targetMotifMatchRegionMatchBeginMF_01338221 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01338214 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01338222 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00876MF_01338211, 1, (STRLEN(?templateMotifCigarP00876MF_01338211) - STRLEN(REPLACE(?templateMotifCigarP00876MF_01338211, CONCAT('^(?:-*[^-]){', STR(((334 - ?templateMotifSequenceMatchBeginPositionP00876212) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1223) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00876MF_01338213, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338213) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338213, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1223), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00876MF_01338213, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338213) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338213, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1223), '}'), '')))), '[^-]', ''))) AS ?step2224) .
BIND(((?step2224 + ?targetMotifMatchRegionMatchBeginPositionMF_01338214) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs5t225) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse63) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01338a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch230 faldo:location ?templateMotifSequenceMatchRegionP00876231 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00876233 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00876MF_01338226 .
?templateMotifSequenceMatchRegionP00876231 faldo:begin ?templateMotifSequenceMatchBeginP00876232 .
?templateMotifSequenceMatchBeginP00876232 faldo:position ?templateMotifSequenceMatchBeginPositionP00876227 ;
faldo:reference isoform:P00876-1 .
?templateMotifSequenceProfileAlignmentOperationP00876233 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
?targetMotifMatch234 faldo:location ?targetMotifMatchRegionMatch235 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01338237 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00876MF_01338228 .
?targetMotifMatchRegionMatch235 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01338236 .
?targetMotifMatchRegionMatchBeginMF_01338236 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01338229 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01338237 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00876MF_01338226, 1, (STRLEN(?templateMotifCigarP00876MF_01338226) - STRLEN(REPLACE(?templateMotifCigarP00876MF_01338226, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionP00876227) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1238) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00876MF_01338228, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338228) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338228, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1238), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00876MF_01338228, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338228) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338228, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1238), '}'), '')))), '[^-]', ''))) AS ?step2239) .
BIND(((?step2239 + ?targetMotifMatchRegionMatchBeginPositionMF_01338229) - 1) AS ?thisPositionOn70) .
BIND(?thisPositionOn70 AS ?thisPositionOn71) .
BIND(?this AS ?pfs5t240) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn70))) AS ?pfsb68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn71))) AS ?pfse69) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn70, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01338a67')) AS ?annotation67) .
BIND(?this AS ?pfs66) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch245 faldo:location ?templateMotifSequenceMatchRegionP00876246 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00876248 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00876MF_01338241 .
?templateMotifSequenceMatchRegionP00876246 faldo:begin ?templateMotifSequenceMatchBeginP00876247 .
?templateMotifSequenceMatchBeginP00876247 faldo:position ?templateMotifSequenceMatchBeginPositionP00876242 ;
faldo:reference isoform:P00876-1 .
?templateMotifSequenceProfileAlignmentOperationP00876248 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
?targetMotifMatch249 faldo:location ?targetMotifMatchRegionMatch250 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01338252 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00876MF_01338243 .
?targetMotifMatchRegionMatch250 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01338251 .
?targetMotifMatchRegionMatchBeginMF_01338251 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01338244 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01338252 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00876MF_01338241, 1, (STRLEN(?templateMotifCigarP00876MF_01338241) - STRLEN(REPLACE(?templateMotifCigarP00876MF_01338241, CONCAT('^(?:-*[^-]){', STR(((294 - ?templateMotifSequenceMatchBeginPositionP00876242) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1253) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00876MF_01338243, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338243) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00876MF_01338243, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338243) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338243, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1253), '}'), '')))), '[^-]', ''))) AS ?step2254) .
BIND(((?step2254 + ?targetMotifMatchRegionMatchBeginPositionMF_01338244) - 1) AS ?thisPositionOn76) .
BIND(?thisPositionOn76 AS ?thisPositionOn77) .
BIND(?this AS ?pfs5t255) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn76))) AS ?pfsb74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn77))) AS ?pfse75) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn76, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01338a73')) AS ?annotation73) .
BIND(?this AS ?pfs72) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch260 faldo:location ?templateMotifSequenceMatchRegionP00876261 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00876263 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00876MF_01338256 .
?templateMotifSequenceMatchRegionP00876261 faldo:begin ?templateMotifSequenceMatchBeginP00876262 .
?templateMotifSequenceMatchBeginP00876262 faldo:position ?templateMotifSequenceMatchBeginPositionP00876257 ;
faldo:reference isoform:P00876-1 .
?templateMotifSequenceProfileAlignmentOperationP00876263 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
?targetMotifMatch264 faldo:location ?targetMotifMatchRegionMatch265 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01338267 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00876MF_01338258 .
?targetMotifMatchRegionMatch265 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01338266 .
?targetMotifMatchRegionMatchBeginMF_01338266 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01338259 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01338267 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00876MF_01338256, 1, (STRLEN(?templateMotifCigarP00876MF_01338256) - STRLEN(REPLACE(?templateMotifCigarP00876MF_01338256, CONCAT('^(?:-*[^-]){', STR(((123 - ?templateMotifSequenceMatchBeginPositionP00876257) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1268) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00876MF_01338258, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338258) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00876MF_01338258, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338258) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338258, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1268), '}'), '')))), '[^-]', ''))) AS ?step2269) .
BIND(((?step2269 + ?targetMotifMatchRegionMatchBeginPositionMF_01338259) - 1) AS ?thisPositionOn84) .
BIND(?thisPositionOn84 AS ?thisPositionOn85) .
BIND(?this AS ?pfs5t270) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn84))) AS ?pfsb80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn85))) AS ?pfse81) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn84, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_01338a79')) AS ?annotation79) .
BIND(?this AS ?pfs78) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch275 faldo:location ?templateMotifSequenceMatchRegionP00876276 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00876278 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00876MF_01338271 .
?templateMotifSequenceMatchRegionP00876276 faldo:begin ?templateMotifSequenceMatchBeginP00876277 .
?templateMotifSequenceMatchBeginP00876277 faldo:position ?templateMotifSequenceMatchBeginPositionP00876272 ;
faldo:reference isoform:P00876-1 .
?templateMotifSequenceProfileAlignmentOperationP00876278 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
?targetMotifMatch279 faldo:location ?targetMotifMatchRegionMatch280 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01338282 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00876MF_01338273 .
?targetMotifMatchRegionMatch280 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01338281 .
?targetMotifMatchRegionMatchBeginMF_01338281 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01338274 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01338282 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00876MF_01338271, 1, (STRLEN(?templateMotifCigarP00876MF_01338271) - STRLEN(REPLACE(?templateMotifCigarP00876MF_01338271, CONCAT('^(?:-*[^-]){', STR(((173 - ?templateMotifSequenceMatchBeginPositionP00876272) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1283) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00876MF_01338273, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338273) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338273, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1283), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00876MF_01338273, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338273) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338273, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1283), '}'), '')))), '[^-]', ''))) AS ?step2284) .
BIND(((?step2284 + ?targetMotifMatchRegionMatchBeginPositionMF_01338274) - 1) AS ?thisPositionOn92) .
BIND(?thisPositionOn92 AS ?thisPositionOn93) .
BIND(?this AS ?pfs5t285) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn92))) AS ?pfsb88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn93))) AS ?pfse89) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn92, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_01338a87')) AS ?annotation87) .
BIND(?this AS ?pfs86) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch290 faldo:location ?templateMotifSequenceMatchRegionP00876291 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00876293 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00876MF_01338286 .
?templateMotifSequenceMatchRegionP00876291 faldo:begin ?templateMotifSequenceMatchBeginP00876292 .
?templateMotifSequenceMatchBeginP00876292 faldo:position ?templateMotifSequenceMatchBeginPositionP00876287 ;
faldo:reference isoform:P00876-1 .
?templateMotifSequenceProfileAlignmentOperationP00876293 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
?targetMotifMatch294 faldo:location ?targetMotifMatchRegionMatch295 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01338297 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00876MF_01338288 .
?targetMotifMatchRegionMatch295 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01338296 .
?targetMotifMatchRegionMatchBeginMF_01338296 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01338289 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01338297 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00876MF_01338286, 1, (STRLEN(?templateMotifCigarP00876MF_01338286) - STRLEN(REPLACE(?templateMotifCigarP00876MF_01338286, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionP00876287) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1298) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00876MF_01338288, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338288) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338288, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1298), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00876MF_01338288, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338288) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338288, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1298), '}'), '')))), '[^-]', ''))) AS ?step2299) .
BIND(((?step2299 + ?targetMotifMatchRegionMatchBeginPositionMF_01338289) - 1) AS ?thisPositionOn100) .
BIND(?thisPositionOn100 AS ?thisPositionOn101) .
BIND(?this AS ?pfs5t300) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn100))) AS ?pfsb96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn101))) AS ?pfse97) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn100, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01338a95')) AS ?annotation95) .
BIND(?this AS ?pfs94) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch305 faldo:location ?templateMotifSequenceMatchRegionP00876306 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00876308 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00876MF_01338301 .
?templateMotifSequenceMatchRegionP00876306 faldo:begin ?templateMotifSequenceMatchBeginP00876307 .
?templateMotifSequenceMatchBeginP00876307 faldo:position ?templateMotifSequenceMatchBeginPositionP00876302 ;
faldo:reference isoform:P00876-1 .
?templateMotifSequenceProfileAlignmentOperationP00876308 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
?targetMotifMatch309 faldo:location ?targetMotifMatchRegionMatch310 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01338312 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00876MF_01338303 .
?targetMotifMatchRegionMatch310 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01338311 .
?targetMotifMatchRegionMatchBeginMF_01338311 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01338304 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01338312 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00876MF_01338301, 1, (STRLEN(?templateMotifCigarP00876MF_01338301) - STRLEN(REPLACE(?templateMotifCigarP00876MF_01338301, CONCAT('^(?:-*[^-]){', STR(((295 - ?templateMotifSequenceMatchBeginPositionP00876302) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1313) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00876MF_01338303, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338303) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338303, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1313), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00876MF_01338303, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338303) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338303, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1313), '}'), '')))), '[^-]', ''))) AS ?step2314) .
BIND(((?step2314 + ?targetMotifMatchRegionMatchBeginPositionMF_01338304) - 1) AS ?thisPositionOn108) .
BIND(?thisPositionOn108 AS ?thisPositionOn109) .
BIND(?this AS ?pfs5t315) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn108))) AS ?pfsb104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn109))) AS ?pfse105) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn108, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_01338a103')) AS ?annotation103) .
BIND(?this AS ?pfs102) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch320 faldo:location ?templateMotifSequenceMatchRegionP00876321 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00876323 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00876MF_01338316 .
?templateMotifSequenceMatchRegionP00876321 faldo:begin ?templateMotifSequenceMatchBeginP00876322 .
?templateMotifSequenceMatchBeginP00876322 faldo:position ?templateMotifSequenceMatchBeginPositionP00876317 ;
faldo:reference isoform:P00876-1 .
?templateMotifSequenceProfileAlignmentOperationP00876323 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
?targetMotifMatch324 faldo:location ?targetMotifMatchRegionMatch325 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01338327 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00876MF_01338318 .
?targetMotifMatchRegionMatch325 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01338326 .
?targetMotifMatchRegionMatchBeginMF_01338326 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01338319 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01338327 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00876MF_01338316, 1, (STRLEN(?templateMotifCigarP00876MF_01338316) - STRLEN(REPLACE(?templateMotifCigarP00876MF_01338316, CONCAT('^(?:-*[^-]){', STR(((327 - ?templateMotifSequenceMatchBeginPositionP00876317) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1328) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00876MF_01338318, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338318) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338318, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1328), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00876MF_01338318, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338318) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338318, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1328), '}'), '')))), '[^-]', ''))) AS ?step2329) .
BIND(((?step2329 + ?targetMotifMatchRegionMatchBeginPositionMF_01338319) - 1) AS ?thisPositionOn116) .
BIND(?thisPositionOn116 AS ?thisPositionOn117) .
BIND(?this AS ?pfs5t330) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn116))) AS ?pfsb112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn117))) AS ?pfse113) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn116, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_01338a111')) AS ?annotation111) .
BIND(?this AS ?pfs110) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch335 faldo:location ?templateMotifSequenceMatchRegionP00876336 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00876338 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00876MF_01338331 .
?templateMotifSequenceMatchRegionP00876336 faldo:begin ?templateMotifSequenceMatchBeginP00876337 .
?templateMotifSequenceMatchBeginP00876337 faldo:position ?templateMotifSequenceMatchBeginPositionP00876332 ;
faldo:reference isoform:P00876-1 .
?templateMotifSequenceProfileAlignmentOperationP00876338 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
?targetMotifMatch339 faldo:location ?targetMotifMatchRegionMatch340 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01338342 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00876MF_01338333 .
?targetMotifMatchRegionMatch340 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01338341 .
?targetMotifMatchRegionMatchBeginMF_01338341 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01338334 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01338342 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00876MF_01338331, 1, (STRLEN(?templateMotifCigarP00876MF_01338331) - STRLEN(REPLACE(?templateMotifCigarP00876MF_01338331, CONCAT('^(?:-*[^-]){', STR(((379 - ?templateMotifSequenceMatchBeginPositionP00876332) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1343) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00876MF_01338333, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338333) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1343), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00876MF_01338333, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338333) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338333, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1343), '}'), '')))), '[^-]', ''))) AS ?step2344) .
BIND(((?step2344 + ?targetMotifMatchRegionMatchBeginPositionMF_01338334) - 1) AS ?thisPositionOn124) .
BIND(?thisPositionOn124 AS ?thisPositionOn125) .
BIND(?this AS ?pfs5t345) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn124))) AS ?pfsb120) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn125))) AS ?pfse121) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn124, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_01338a119')) AS ?annotation119) .
BIND(?this AS ?pfs118) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch350 faldo:location ?templateMotifSequenceMatchRegionP00876351 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00876353 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00876MF_01338346 .
?templateMotifSequenceMatchRegionP00876351 faldo:begin ?templateMotifSequenceMatchBeginP00876352 .
?templateMotifSequenceMatchBeginP00876352 faldo:position ?templateMotifSequenceMatchBeginPositionP00876347 ;
faldo:reference isoform:P00876-1 .
?templateMotifSequenceProfileAlignmentOperationP00876353 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
?targetMotifMatch354 faldo:location ?targetMotifMatchRegionMatch355 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01338357 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00876MF_01338348 .
?targetMotifMatchRegionMatch355 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01338356 .
?targetMotifMatchRegionMatchBeginMF_01338356 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01338349 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01338357 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00876MF_01338346, 1, (STRLEN(?templateMotifCigarP00876MF_01338346) - STRLEN(REPLACE(?templateMotifCigarP00876MF_01338346, CONCAT('^(?:-*[^-]){', STR(((201 - ?templateMotifSequenceMatchBeginPositionP00876347) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1358) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00876MF_01338348, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338348) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338348, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1358), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00876MF_01338348, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338348) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338348, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1358), '}'), '')))), '[^-]', ''))) AS ?step2359) .
BIND(((?step2359 + ?targetMotifMatchRegionMatchBeginPositionMF_01338349) - 1) AS ?thisPositionOn130) .
BIND(?thisPositionOn130 AS ?thisPositionOn131) .
BIND(?this AS ?pfs5t360) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn130))) AS ?pfsb128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn131))) AS ?pfse129) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn130, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_01338a127')) AS ?annotation127) .
BIND(?this AS ?pfs126) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch365 faldo:location ?templateMotifSequenceMatchRegionP00876366 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00876368 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00876MF_01338361 .
?templateMotifSequenceMatchRegionP00876366 faldo:begin ?templateMotifSequenceMatchBeginP00876367 .
?templateMotifSequenceMatchBeginP00876367 faldo:position ?templateMotifSequenceMatchBeginPositionP00876362 ;
faldo:reference isoform:P00876-1 .
?templateMotifSequenceProfileAlignmentOperationP00876368 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
?targetMotifMatch369 faldo:location ?targetMotifMatchRegionMatch370 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01338372 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00876MF_01338363 .
?targetMotifMatchRegionMatch370 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01338371 .
?targetMotifMatchRegionMatchBeginMF_01338371 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01338364 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01338372 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00876MF_01338361, 1, (STRLEN(?templateMotifCigarP00876MF_01338361) - STRLEN(REPLACE(?templateMotifCigarP00876MF_01338361, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionP00876362) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1373) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00876MF_01338363, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338363) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338363, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1373), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00876MF_01338363, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338363) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338363, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1373), '}'), '')))), '[^-]', ''))) AS ?step2374) .
BIND(((?step2374 + ?targetMotifMatchRegionMatchBeginPositionMF_01338364) - 1) AS ?thisPositionOn136) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00876MF_01338361, 1, (STRLEN(?templateMotifCigarP00876MF_01338361) - STRLEN(REPLACE(?templateMotifCigarP00876MF_01338361, CONCAT('^(?:-*[^-]){', STR(((2 - ?templateMotifSequenceMatchBeginPositionP00876362) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1375) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00876MF_01338363, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338363) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338363, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1375), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00876MF_01338363, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338363) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338363, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1375), '}'), '')))), '[^-]', ''))) AS ?step2376) .
BIND(((?step2376 + ?targetMotifMatchRegionMatchBeginPositionMF_01338364) - 1) AS ?thisPositionOn137) .
BIND(?this AS ?pfs6t377) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn136))) AS ?pfsb134) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn137))) AS ?pfse135) .
FILTER ((BOUND(?thisPositionOn136) && BOUND(?thisPositionOn137))) .
BIND(URI(CONCAT(STR(?this), '#MF_01338a133')) AS ?annotation133) .
BIND(?this AS ?pfs132) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch382 faldo:location ?templateMotifSequenceMatchRegionP00876383 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00876385 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00876MF_01338378 .
?templateMotifSequenceMatchRegionP00876383 faldo:begin ?templateMotifSequenceMatchBeginP00876384 .
?templateMotifSequenceMatchBeginP00876384 faldo:position ?templateMotifSequenceMatchBeginPositionP00876379 ;
faldo:reference isoform:P00876-1 .
?templateMotifSequenceProfileAlignmentOperationP00876385 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
?targetMotifMatch386 faldo:location ?targetMotifMatchRegionMatch387 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01338389 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00876MF_01338380 .
?targetMotifMatchRegionMatch387 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01338388 .
?targetMotifMatchRegionMatchBeginMF_01338388 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01338381 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01338389 edam:has_input signature:MF_01338 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00876MF_01338378, 1, (STRLEN(?templateMotifCigarP00876MF_01338378) - STRLEN(REPLACE(?templateMotifCigarP00876MF_01338378, CONCAT('^(?:-*[^-]){', STR(((3 - ?templateMotifSequenceMatchBeginPositionP00876379) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1390) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00876MF_01338380, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338380) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338380, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1390), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00876MF_01338380, 1, (STRLEN(?targetMotifMatchCigarP00876MF_01338380) - STRLEN(REPLACE(?targetMotifMatchCigarP00876MF_01338380, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1390), '}'), '')))), '[^-]', ''))) AS ?step2391) .
BIND(((?step2391 + ?targetMotifMatchRegionMatchBeginPositionMF_01338381) - 1) AS ?thisPositionOn142) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn143) .
BIND(?this AS ?pfs6t392) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn142))) AS ?pfsb140) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn143))) AS ?pfse141) .
FILTER ((BOUND(?thisPositionOn142) && BOUND(?thisPositionOn143))) .
BIND(URI(CONCAT(STR(?this), '#MF_01338a139')) AS ?annotation139) .
BIND(?this AS ?pfs138) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag393) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag393, ?UNBOUND_VARIABLE) AS ?case6) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag394) .
}
BIND(IF(BOUND(?tagFT_18), ?caseWithTag394, ?UNBOUND_VARIABLE) AS ?case7) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag395) .
}
BIND(IF(BOUND(?tagFT_16), ?caseWithTag395, ?UNBOUND_VARIABLE) AS ?case8) .
OPTIONAL {
?this a up:Protein .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag396) .
}
BIND(IF(BOUND(?tagFT_15), ?caseWithTag396, ?UNBOUND_VARIABLE) AS ?case10) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag397) .
}
BIND(IF(BOUND(?tagFT_18), ?caseWithTag397, ?UNBOUND_VARIABLE) AS ?case11) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
BIND(?this AS ?case12) .
}
OPTIONAL {
?this a up:Protein .
{
{
?this up:proteome .
} UNION {
?this up:proteome ?p398 .
?p398 skos:narrower .
}
} UNION {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
}
BIND(?this AS ?case13) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
BIND(?this AS ?case14) .
BIND(URI(CONCAT(STR(?this), '#MF_01338a15')) AS ?name15) .
}
OPTIONAL {
?this a up:Protein .
{
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
} UNION {
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
}
BIND(?this AS ?case16) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33090 .
})) .
BIND(?this AS ?case17) .
BIND(URI(CONCAT(STR(?this), '#MF_01338a18')) AS ?name18) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1117 .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
})) .
BIND(?this AS ?case19) .
BIND(URI(CONCAT(STR(?this), '#MF_01338a20')) AS ?name20) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
})) .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1117 .
})) .
BIND(?this AS ?case21) .
BIND(URI(CONCAT(STR(?this), '#MF_01338a22')) AS ?name22) .
}
}
"xsd:string |
